In silico prediction of long intergenic non-coding RNAs in sheep

Long non-coding RNAs (lncRNAs) are transcribed RNA molecules >200 nucleotides in length that do not encode proteins and serve as key regulators of diverse biological processes. Recently, thousands of long intergenic non-coding RNAs (lincRNAs), a type of lncRNAs, have been identified in mammalians using massive parallel large sequencing technologies. The availability of the genome sequence of sheep (Ovis aries) has allowed us genomic prediction of non-coding RNAs. This is the first study to identify lincRNAs using RNA-seq data of eight different tissues of sheep, including brain, heart, kidney, liver, lung, ovary, skin, and white adipose. A computational pipeline was employed to characterize 325 putative lincRNAs with high confidence from eight important tissues of sheep using different criteria such as GC content, exon number, gene length, co-expression analysis, stability, and tissue-specific scores. Sixty-four putative lincRNAs displayed tissues-specific expression. The highest number of tissues-specific lincRNAs was found in skin and brain. All novel lincRNAs that aligned to the human and mouse lincRNAs had conserved synteny. These closest protein-coding genes were enriched in 11 significant GO terms such as limb development, appendage development, striated muscle tissue development, and multicellular organismal development. The findings reported here have important implications for the study of sheep genome.

Progesterone secretion by ovine granulosa cells: effects of nitric oxide and plane of nutrition

The aim was to evaluate the effects of nutritional plane on in vitro progesterone (P4) secretion by granulosa (G) cells cultured in the presence or absence of effectors of the nitric oxide (NO) system. Ewes were randomly assigned into three nutritional groups: control (C), overfed (O; 2 × C), or underfed (U; 0.6 × C). Follicular development was induced by FSH injections. On day 15 of the estrous cycle, G cells were isolated and cultured with or without DETA-NONOate (NO donor), L-NAME (NO synthase [S] inhibitor), Arg and (or) LH for 8 h. DETA-NONOate decreased basal and LH-stimulated P4 secretion, and L-NAME increased basal P4 secretion in all groups. In U, Arg decreased LH-stimulated P4 secretion. These data demonstrate that (i) plane of nutrition affects basal P4 secretion by G cells, (ii) the NO donor decreases, NOS inhibitor increases but Arg does not affect basal P4 secretion, and (iii) effects of Arg on LH-stimulated P4 secretion are affected by plane of nutrition in FSH-treated sheep. Thus, plane of nutrition affects G cell function, and the NO system is involved in the regulation of basal and LH-stimulated P4 secretion. The mechanism of the NO system effects on secretory activity of G cells remains to be elucidated.

Dynamics of infestation of tracers lambs by gastrointestinal helminths under a traditional management system in the North of Tunisia

The authors present a survey of gastrointestinal helminths of sheep on permanent pastures in the extreme north region of Tunisia (Mediterranean climate). Dynamic infestation of animals has been monitored by using batches of three tracer lambs introduced each two months during 2004 and 2005. These lambs were kept in the pens of veterinary school of Sidi Thabet (Tunisia) during three months and then necropsied. Faecal and blood samples were took from tracer lambs each two months during the whole period, and from animal flock only during 2004. The main helminth genera encountered were Trichostrongylus spp., Teladorsagia spp., Strongyloides papillosus and Anoplocephalidea; occasionaly were found Nematodirus, Oesophagostomum, Chabertia, Cooperia, Trichuris and Paramphistomum. The egg count of the ewes and lambs in the flock showed two peaks. For both ewes and lambs there is a gradual increase from January with a peak in May-June. This first peak is considered to be due to acquisition of infective larvae during the rainy and cold season, as evident from the worm burdens of tracer lambs. The second peak was exclusively observed in ewes during late autumn-early winter (November-December); it has two origins: infestation by third larvae stage and the periparturient rise. The worm burdens of tracer lambs showed that there was a gradual accumulation of nematodes from September-October, reaching a peak in March-April; a very low or naught infection is reported during the dry period (July-August). Infection by Anoplocephalidea was higher during the dry season. This study is primordial for a comprehensive control programme implementation against gastrointestinal helminths.

Trypanosoma vivax, T. congolense "forest type" and T. simiae: prevalence in domestic animals of sleeping sickness foci of Cameroon

In order to better understand the epidemiology of Human and Animal trypanosomiasis that occur together in sleeping sickness foci, a study of prevalences of animal parasites (Trypanosoma vivax, T. congolense "forest type", and T. simiae) infections was conducted on domestic animals to complete the previous work carried on T. brucei gambiense prevalence using the same animal sample. 875 domestic animals, including 307 pigs, 264 goats, 267 sheep and 37 dogs were sampled in the sleeping sickness foci of Bipindi, Campo, Doumé and Fontem in Cameroon. The polymerase chain reaction (PCR) based method was used to identify these trypanosome species. A total of 237 (27.08%) domestic animals were infected by at least one trypanosome species. The prevalence of T. vivax, T. congolense "forest type" and T. simiae were 20.91%, 11.42% and 0.34% respectively. The prevalences of 7 vivax and T. congolense "forest type" differed significantly between the animal species and between the foci (p < 0.0001); however, these two trypanosomes were found in all animal species as well as in all the foci subjected to the study. The high prevalences of 7 vivax and T congolense "forest type" in Bipindi and Fontem-Center indicate their intense transmission in these foci.