Comparison of Transcriptome Differences between Two Rice Cultivars Differing in Cadmium Translocation from Spike-Neck to Grain

At present, the mechanism of varietal differences in cadmium (Cd) accumulation in rice is not well understood. Two rice cultivars, ZZY (high translocation-high grain Cd) and SJ18 (low translocation-low grain Cd), were used to analyze transcriptome differences in the spike-neck tissue in field trials. The results showed that, compared with ZZY, 22,367 differentially expressed genes (DEGs) were identified in SJ18, including 2941 upregulated and 19,426 downregulated genes. GO analysis enriched 59 downregulated terms, concerning 24 terms enriched for more than 1000 DEGs, including cellular and metabolic processes, biological regulation, localization, catalytic activity, transporter activity, signaling, etc. KEGG enrichment identified 21 significant downregulated pathways, regarding the ribosome, metabolic pathways, biosynthesis of secondary metabolism, signaling transduction, cell membrane and cytoskeleton synthesis, genetic information transfer, amino acid synthesis, etc. Weighted gene co-expression network analysis (WGCNA) revealed that these DEGs could be clustered into five modules. Among them, the yellow module was significantly related to SJ18 with hub genes related to OsHMA and OsActin, whereas the brown module was significantly related to ZZY with hub genes related to mitogen-activated protein kinase (MAPK), CBS, and glutaredoxin. This suggests that different mechanisms are involved in the process of spike-neck-grain Cd translocation among varieties. This study provides new insights into the mechanisms underlying differences in Cd transport among rice varieties.

Exploring the Rice Cultivars in Large-Scale Chinese Local Gazetteers: A Computational Approach

Chinese local gazetteers have long been widely used by scholars to investigate the local products, culture, economy, and much more. Confronted with large-scale digitized resources nowadays, researchers can explore historical texts in a novel way. In this paper, we propose a computational approach in order to perform large-scale quantitative analysis of plant knowledge embedded in Chinese local gazetteers. We select the typical rice cultivars by their occurrences in the records, interpret their common features, and leverage the data clustering algorithm to investigate the inner connections among cultivars. We conduct a case study on a dataset of records of rice cultivars over 8 centuries in Jiangsu Province, China. We find that although planting early-season rice in Jiangsu province was the common practice, the local rice farmers cared more about the color, quality, and uses of cultivars than their sowing time. In addition, not all the rice varieties mentioned frequently in records are local plants. Plants imported from other provinces or countries were also highly recorded because of their good quality and special characteristics. Our study offers a practical guide and reference to history study as well as useful clues for modern agriculture.

Food Security in China: A Brief View of Rice Production in Recent 20 Years

Rice production affects the food security and socioeconomic status of over half the world’s population. Rice-producing countries, however, are facing population growth, reduction in rice planting area, and global change. Understanding the trends of rice production and major determinants is key to regulating rice production. We thus analyzed the trends of rice production and related determinants in China from 2001 to 2021, revealing that the annual rice production (TRP) has risen steadily (r = 0.929, p < 0.0001) in recent 20 years. TRP in 2021 was 19.9% higher than that in 2001, which was primarily achieved by the increment of middle rice production (MRP). MRP increased by 46.2% from 2000 to 2018, and grain yield per unit area (GPA) was the largest in middle rice. The enhancement of GPAs is significantly correlated with the consumption of agricultural resources and the number of released rice cultivars, but variations exist. TRP and GPA vary in different provinces; Hunan (25 ± 2 megatons) and Xinjiang (8364 ± 806 kg/hectare) show the largest values, respectively. TRP could be further increased by 13.8% by improving MRP. The results suggest that rice production in China has a large potential to be further improved through regulations.

Differentiation of the High Night Temperature Response in Leaf Segments of Rice Cultivars with Contrasting Tolerance

High night temperatures (HNT) affect rice yield in the field and induce chlorosis symptoms in leaves in controlled chamber experiments. However, little is known about molecular changes in leaf segments under these conditions. Transcript and metabolite profiling were performed for leaf segments of six rice cultivars with different HNT sensitivity. The metabolite profile of the sheath revealed a lower metabolite abundance compared to segments of the leaf blade. Furthermore, pre-adaptation to stress under control conditions was detected in the sheath, whereas this segment was only slightly affected by HNT. No unique significant transcriptomic changes were observed in the leaf base, including the basal growth zone at HNT conditions. Instead, selected metabolites showed correlations with HNT sensitivity in the base. The middle part and the tip were most highly affected by HNT in sensitive cultivars on the transcriptomic level with higher expression of jasmonic acid signaling related genes, genes encoding enzymes involved in flavonoid metabolism and a gene encoding galactinol synthase. In addition, gene expression of expansins known to improve stress tolerance increased in tolerant and sensitive cultivars. The investigation of the different leaf segments indicated highly segment specific responses to HNT. Molecular key players for HNT sensitivity were identified.

Biofertilizer Activity of Azospirillum sp. B510 on the Rice Productivity in Ghana

Rice production in Ghana has become unsustainable due to the extremely nutrient-poor soils. It is caused by inadequate soil fertility management, including the inefficient application of fertilizers. A practical solution could be the biofertilizers, Azospirillum sp. B510. We performed field trials in Ghana and Japan to compare the effects of B510 colonization on selected Ghanaian rice varieties grown. The B510 inoculation significantly enhanced the rice cultivars’ growth and yield. The phenotypic characteristics observed in rice varieties Exbaika, Ex-Boako, AgraRice, and Amankwatia were mainly short length and high tillering capacity. These features are attributed to the host plant (cv. Nipponbare), from which the strain B510 was isolated. Furthermore, Azospirillum species has been identified as the dominant colonizing bacterium of rice rhizosphere across a diverse range of agroecologies in all major rice-growing regions in Ghana. Our results suggest that the utilization of B510 as a bio-fertilizer presents a promising way to improve rice growth, enhance soil fertility, and sustain rice productivity in Ghana.

Rice Seedling Growth Promotion by Biochar Varies With Genotypes and Application Dosages

While biochar use in agriculture is widely advocated, how the effect of biochar on plant growth varies with biochar forms and crop genotypes is poorly addressed. The role of dissolvable organic matter (DOM) in plant growth has been increasingly addressed for crop production with biochar. In this study, a hydroponic culture of rice seedling growth of two cultivars was treated with bulk mass (DOM-containing), water extract (DOM only), and extracted residue (DOM-free) of maize residue biochar, at a volumetric dosage of 0.01, 0.05, and 0.1%, respectively. On seedling root growth of the two cultivars, bulk biochar exerted a generally negative effect, while the biochar extract had a consistently positive effect across the application dosages. Differently, the extracted biochar showed a contrasting effect between genotypes. In another hydroponic culture with Wuyunjing 7 treated with biochar extract at sequential dosages, seedling growth was promoted by 95% at 0.01% dosage but by 26% at 0.1% dosage, explained with the great promotion of secondary roots rather than of primary roots. Such effects were likely explained by low molecular weight organic acids and nanoparticles contained in the biochar DOM. This study highlights the importance of biochar DOM and crop genotype when evaluating the effect of biochar on plants. The use of low dosage of biochar DOM could help farmers to adopt biochar technology as a solution for agricultural sustainability.

Effect of Rice Grain (Oryza sativa L.) Enrichment with Selenium on Foliar Leaf Gas Exchanges and Accumulation of Nutrients

An agronomic itinerary for Se biofortification of two rice cultivars (Ariete and Ceres) through foliar fertilization with sodium selenate and sodium selenite with different concentrations (25, 50, 75 and 100 g Se.ha^-1), was implemented in experimental fields. The selenium toxicity threshold was not exceeded, as shown by the eco-physiological data obtained through leaf gas exchanges. The highest Se enrichment in paddy grains was obtained with selenite for both cultivars, especially at the highest doses, i.e., 75 and 100 g Se.ha^-1, with approximately a 5.0-fold increase compared with control values. In paddy grains, Zn was the most affected element by the treatments with Se with decreases up to 54%. When comparing the losses between rough and polished grains regardless of the cultivars, Se species and concentrations, it was observed that only Cu, Mg and Zn exhibited losses <50%. The remaining elements generally had losses >70%. The loss of Se is more pronounced in Ceres cultivar than in Ariete but rarely exceeds 50%. The analysis by µ-EDXRF showed that, in Ariete cultivar, Se is mostly homogeneously distributed in the grain regardless of any treatments, while in Ceres cultivar, the Se distribution seems to favor accumulation in the periphery, perhaps in the bran.

Do sulfur addition and rhizoplane iron plaque affect chromium uptake by rice (Oryza sativa L.) seedlings in solution culture?

Heavy metal uptake is confined by other elements, namely iron (Fe) and sulfur (S). There are yet no reports on the contribution of S supply to the attenuation of chromium (Cr) uptake when different species of Cr are employed. The bioaccumulation of Cr in two cultivars of rice seedlings subjected to 1.0 mg L^-1 Cr (III and VI) stress under S deprived or non-deprived conditions were examined in a hydroponic experiment. Sulfur nutrition promoted the root and shoot growth of rice cultivars under Cr stress. For both + S/ - S seedlings, the concentration of both Cr species followed the sequence ACA (ascorbic citrate acetic) extract > root > shoot, with less Cr accumulated in shoots of + S seedlings to that of - S seedlings. The concentrations of Cr and Fe in ACA extracts were found to be significantly correlated. Compared to + S treatment, Cr and Fe contents in iron plaque without S treatment were markedly reduced, especially for Cr (VI). Cr content in roots and shoots was indicated to be at par between cultivars; however, it significantly differed for S and Cr treatments. The Cr translocation between different parts of plaque-harboring seedlings was more pronounced in Cr (VI) treatment relative to Cr (III) treatment. Increased immobilization of Cr in iron plaque of + S seedlings and its subsequent reduction in aerial tissues may likely shed some light on the barrier function of iron plaques in the uptake of both Cr species by rice seedlings.

Mixed-cropping systems of different rice cultivars have grain yield and quality advantages over mono-cropping systems

BACKGROUND

A mixed-cropping system that enhances farmland biodiversity has the potential to improve grain yield and quality; however, the impacts of growing different rice cultivars simultaneously has been rarely investigated. In the present study, five popular rice cultivars were selected and ten mixture combinations were made according to the growth period, plant height, grain yield and quality, and pest and disease resistance. Seedlings of the five cultivars and ten mixture combinations (mixed-sowing of the seeds in an equal ratio, then mixed-transplanting and finally mixed-harvesting) were grown in plastic pots in a glasshouse during the early and late growing seasons in 2016.

RESULTS

Compared with the mono-cropping systems in the early and late growing seasons in 2016 (paired t-test), the mixed-cropping systems increased the rice leaf photosynthetic rate, soil plant analysis development (SPAD) index and total aboveground dry weight. Moreover, mixed-cropping systems improved the number of spikelets per panicle, seed-setting rate, and grain weight per pot and harvest index by 19.52% and 5.77%, 8.53% and 4.41%, 8.31% and 4.61%, and 10.26% and 6.98% in the early and late growing seasons, respectively. In addition, mixed-cropping systems reduced chalky rice rate and chalkiness degree by 33.12% and 43.42% and by 30.11% and 48.13% in the early and late growing seasons, respectively.

CONCLUSION

The SPAD indexes and photosynthetic rates enhanced at physiology maturity in mixed-cropping systems may result in higher grain yield and better grain quality. In general, it was found that mixed-cropping with different rice cultivars has the potential for increasing grain yield and improving grain quality. © 2018 Society of Chemical Industry.

Comparative Rice Bran Metabolomics across Diverse Cultivars and Functional Rice Gene⁻Bran Metabolite Relationships

Rice (Oryza sativa L.) processing yields ~60 million metric tons of bran annually. Rice genes producing bran metabolites of nutritional and human health importance were assessed across 17 diverse cultivars from seven countries using non-targeted metabolomics, and resulted in 378–430 metabolites. Gambiaka cultivar had the highest number and Njavara had the lowest number of metabolites. The 71 rice bran compounds of significant variation by cultivar included 21 amino acids, seven carbohydrates, two metabolites from cofactors and vitamins, 33 lipids, six nucleotides, and two secondary metabolites. Tryptophan, α-ketoglutarate, γ-tocopherol/β-tocopherol, and γ-tocotrienol are examples of bran metabolites with extensive cultivar variation and genetic information. Thirty-four rice bran components that varied between cultivars linked to 535 putative biosynthetic genes using to the OryzaCyc 4.0, Plant Metabolic Network database. Rice genes responsible for bran composition with animal and human health importance is available for rice breeding programs to utilize in crop improvement.

Studies on effect of temperature and time on textural and rheological properties of starch isolated from traditional rice cultivars of Kashmir (India)

In the present study, the effect of storage temperature and time on the textural and rheological properties of starch gels from seven different rice cultivars having higher amylose content than the hybrid rice varieties were evaluated. Water solubility and swelling power increased with every 10C increase in temperature due to granule swelling and solubilization of starch wherein the maximum solubility was found in starch of Koshkari rice cultivar (0.721 to 13.50) and swelling power in starch of Zag rice cultivar (3.688 to 10.806). However, syneresis in the analyzed rice starch gels had shown a fluctuating trend for each individual cultivar at different storage periods in which the cultivars Zag had shown the highest values of syneresis during storage (4.123 to 4.957%). In the texture profile analysis of starch gel of these cultivars, Mushki Budgi had the highest value of hardness (0.723N), gumminess (36.262) and chewiness (31.056). The turbidity values of gelatinized starch suspensions from different rice cultivars increased progressively during the first 4 days of storage followed by a decrease in the 5th day coupled with slight increase in the 6th day. The highest turbidity was found in Zag ranging from 1.47 to 1.67 during refrigerated storage after 6 days. The rheological analysis revealed that Zag indicated the highest value of TG' (76.96C) whereas cultivars Koshkari and Mushki Kandi had shown the lowest value of TG' (74.34C) upon heating cycle.

PRACTICAL APPLICATIONS

Rheological properties of starch are affected by amylose contents, lipid contents, branch chain length distribution of amylopectin. The starch from different varieties depicted variable textural and rheological properties at various time: temperature combinations. No research has been reported to explore the effect of time and temperature on the textural and rheological properties of starch isolated from these traditional rice cultivars. The starches from traditional rice cultivars (native or indigenous rice cultivars of a region) indicated novel characteristic as compared to other cultivars in terms of their higher amylose content, starch yield, purity, clarity, solubility, syneresis, turbidity, and rheology. The novelty of this research was to exploit the desirable properties of starch obtained from traditional rice cultivars that had better characteristics than the hybrid varieties. This in turn led the various agencies to motivate the farmers to encourage their cultivation, provide an essential platform to scientists to inherit their valuable characteristics.

Ammonia emission from rice leaves in relation to photorespiration and genotypic differences in glutamine synthetase activity

BACKGROUND AND AIMS

Rice (Oryza sativa) plants lose significant amounts of volatile NH(3) from their leaves, but it has not been shown that this is a consequence of photorespiration. Involvement of photorespiration in NH(3) emission and the role of glutamine synthetase (GS) on NH(3) recycling were investigated using two rice cultivars with different GS activities.

METHODS

NH(3) emission (AER), and gross photosynthesis (P(G)), transpiration (Tr) and stomatal conductance (g(S)) were measured on leaves of 'Akenohoshi', a cultivar with high GS activity, and 'Kasalath', a cultivar with low GS activity, under different light intensities (200, 500 and 1000 µmol m(-2) s(-1)), leaf temperatures (27·5, 32·5 and 37·5 °C) and atmospheric O(2) concentrations ([O(2)]: 2, 21 and 40 %, corresponding to 20, 210 and 400 mmol mol(-1)).

KEY RESULTS

An increase in [O(2)] increased AER in the two cultivars, accompanied by a decrease in P(G) due to enhanced photorespiration, but did not greatly influence Tr and g(S). There were significant positive correlations between AER and photorespiration in both cultivars. Increasing light intensity increased AER, P(G), Tr and g(S) in both cultivars, whereas increasing leaf temperature increased AER and Tr but slightly decreased P(G) and g(S). 'Kasalath' (low GS activity) showed higher AER than 'Akenohoshi' (high GS activity) at high light intensity, leaf temperature and [O(2)].

CONCLUSIONS

Our results demonstrate that photorespiration is strongly involved in NH(3) emission by rice leaves and suggest that differences in AER between cultivars result from their different GS activities, which would result in different capacities for reassimilation of photorespiratory NH(3). The results also suggest that NH(3) emission in rice leaves is not directly controlled by transpiration and stomatal conductance.