DeepCOVNet Model for COVID-19 Detection Using Chest X-Ray Images

COVID-19 is an epidemic disease that has threatened all the people at worldwide scale and eventually became a pandemic It is a crucial task to differentiate COVID-19-affected patients from healthy patient populations. The need for technology enabled solutions is pertinent and this paper proposes a deep learning model for detection of COVID-19 using Chest X-Ray (CXR) images. In this research work, we provide insights on how to build robust deep learning based models for COVID-19 CXR image classification from Normal and Pneumonia affected CXR images. We contribute a methodical escort on preparation of data to produce a robust deep learning model. The paper prepared datasets by refactoring, using images from several datasets for ameliorate training of deep model. These recently published datasets enable us to build our own model and compare by using pre-trained models. The proposed experiments show the ability to work effectively to classify COVID-19 patients utilizing CXR. The empirical work, which uses a 3 convolutional layer based Deep Neural Network called "DeepCOVNet" to classify CXR images into 3 classes: COVID-19, Normal and Pneumonia cases, yielded an accuracy of 96.77% and a F1-score of 0.96 on two different combination of datasets.

Water quality assessment and occurrence of seagrass associated pen shell Pinna bicolor (Gmelin, 1791) and Pinna deltodes (Menke, 1843) in Pudupattinam Coastal Area, Palk Bay, South East Coast, India

Pen shell species such as Pinna bicolor and Pinna deltodes are found in the muddy region associated with intertidal seagrass in the coastal area of Pudupattinam. The pen shell is one of the sources of animal protein-rich, thereby encouraging the community of pen shells and their study worldwide. The water samples were collected for a year between January to December 2016 and analysed. Salinity (30.1-31.5‰), pH (8.1-8.2), EC value (39.79 103-46.09103 mho), turbidity 25-54 NTU, TSS value (5.51-108 mg/l), DO (4.45-5.74 ml/l), BOD (0.175 -1.05 mg/l), chemical oxygen demand (9.6-39.1 mg/l), chloride 14,276.8-16,124.9 mg/l), sulphate (1975.3-25 mg/l), ammonia (0.022-0.112 μm/l), inorganic phosphate (0.754 μm/l and maximum 1.568 μm/l), total nitrogen (10.829-29.509 μm/l), total phosphate (1.76-3.174 μm/l) and silicate (42.264-64.121 μm/l). Minimum and maximum water temperature ranges (26.9-30.6 °C) were recorded. A total of 623 Pinna bicolor and 1341 Pinna deltodes were collected during the same time and consisted of 305 males and 318 females and 558 males and 783 females, respectively. The improvements in the parameters of physico-chemical and statistical analysis have been shown to have a minor effect on the distribution of these two species in the present research, as environmental factors were not sufficient to influence their distribution.

Sleep and Exercise among Young Doctors in a Tertiary Care Hospital in India: A Pilot Cross-Sectional Study

Background

Limited information is available on the sleep and propensity for daytime sleepiness in young medical doctors of India.

Methods

The 2-week self-reported data surrounding sleep and exercise habits, and the Epworth sleepiness scale (ESS) score obtained from volunteering doctors of a tertiary care hospital in India, were summarized as median (Q1-Q3). Comparisons with Mann-Whitney U test and correlations with Spearman's rank correlation were done.

Results

Forty-seven doctors (28 [26-33] years, 16 males) reported a total sleep duration (TSD) of 6.3 (6-6.7) hours, sleep latency of 9 (5.1-15.8) minutes, and ESS score of 8 (5-10). The number of days (out of 14) when the subjective feeling of 'refreshed', 'somewhat refreshed', and 'fatigued' was experienced was respectively 6 (2-9), 5 (3-8), and 1 (0-4). Junior-level doctors experienced more days of 'fatigue' than senior-level doctors (3 [0-4.3], 0 [0-0]; p = 0.002). Doctors who did not exercise reported greater days of fatigue than those who exercised (2 [0-4.8], 0 [0-2]; p = 0.047).

Conclusions

The young doctors of our study slept less than the recommended amount of 7 hours by the American Academy of Sleep Medicine. Their short sleep latency and normal propensity for daytime sleepiness, though encouraging, may be an effect of insufficient sleep and mentally alerting daytime schedule respectively. Notably, we found a positive association between exercise habits and subjective restoration following sleep in our study population. The sleep requirements and sleep structure among Indians are yet to be established. Our findings add to the data on sleep in the Indian context.

Variations in extra-hepatic biliary tree morphology and morphometry: a narrative review of literature with focus on cystohepatic triangle

The morphometry and morphology of the components of extrahepatic biliary tree show extensive variations. A beforehand recognition of these variations is very crucial to prevent unintended complications while performing surgeries in this region. This study was conducted to analyse the configuration of the extrahepatic biliary tree and its possible variations, as well as measure the components that limit the cystohepatic triangle. Articles were searched in major online indexed databases (Medline and PubMed, Scopus, Embase, CINAHL Plus, Web of Science and Google Scholar) using relevant key words. A total of 73 articles matched the search criteria of which 55 articles were identified for data extraction. The length of left and right hepatic duct in majority of studies was found to be > 10 mm. A wide range of diameters of hepatic ducts were observed between 5 and 43 mm. The average length of cystic duct is around 20 mm. The length and diameter of the common bile duct are 50-150 mm and 3-9 mm, respectively. The most frequently observed pattern of insertion of cystic duct into common hepatic duct is right lateral, rarely anterior, or posterior spiral insertion can present. The results of this study will provide a standard reference range which instead will help to differentiate the normal and pathological conditions.

BioSimulators: a central registry of simulation engines and services for recommending specific tools

Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, because the numerous formats and methods for simulating various subsystems and scales remain siloed by different software tools. For example, each tool must be executed through a distinct interface. To help investigators find and use simulation tools, we developed BioSimulators (https://biosimulators.org), a central registry of the capabilities of simulation tools and consistent Python, command-line and containerized interfaces to each version of each tool. The foundation of BioSimulators is standards, such as CellML, SBML, SED-ML and the COMBINE archive format, and validation tools for simulation projects and simulation tools that ensure these standards are used consistently. To help modelers find tools for particular projects, we have also used the registry to develop recommendation services. We anticipate that BioSimulators will help modelers exchange, reproduce, and combine simulations.

Variations in the branching pattern of tibial nerve in foot: a review of literature and relevant clinical anatomy

Considerable variations have been reported regarding the branching pattern of tibial nerve (TN) close to its termination in foot. In order to comprehend the clinical anatomy of heel pain awareness of all the possible variations in relation to terminal branching pattern of TN (close to the tarsal tunnel) is essential. The present study was conducted to undertake a comprehensive review of the variations in tibial nerve branches in foot with particular emphasis on the implications for sensory distribution of these branches. Articles were searched in major online indexed databases using relevant key words. The pattern of termination of TN was noted as either trifurcation or bifurcation. Bifurcation pattern was more commonly observed and is associated with the medial calcaneal nerve (MCN) either arising high or low relative to the tarsal tunnel. The most commonly noted type of bifurcation was proximal to malleolar-calcaneal axis but within the tarsal tunnel. Across all five types of bifurcation reported in literature the termination point of TN ranged from 3 cm proximal to 3 cm distal to malleolar-calcaneal axis and therefore the area beyond this region can be considered as safe zone for performing invasive procedures. MCN showed considerable variations in its origin both in trifurcation and bifurcation pattern pertaining to number of branches (one/two/three) at the point of origin. The origin of inferior calcaneal nerve (ICN) was observed to be relatively less variable as it mostly arose as a branch of lateral plantar nerve (LPN) and sometimes as a direct branch from TN before termination. The frequent variation of MCN in the tarsal tunnel should be kept in mind while undertaking decompression measures in medial ankle region.

Morphometry and morphological analysis of carotico-clinoid foramen: an anatomical study with clinical implications

BACKGROUND

The dural fold between anterior and middle clinoid processes on mineralisation leads to the formation of caroticoclinoid foramen (CCF). Different morphology of this foramen presents with different clinical features. The present study reports the frequency of CCF in the population of Bihar, while providing an account of assimilated information from previous literature regarding the association of caroticoclinoid ligament ossification with age and human genetics.

MATERIALS AND METHODS

The study was conducted on 100 adult dry human skulls of unknown age and sex, and 50 lateral view radiographs of the head.

RESULTS

Of the 100 dry skull bones, 9 presented with different forms of CCF. Bilateral complete foramina were noticed in 2 (2%) skull bones, while the incomplete foramina were observed bilaterally in 3 (3%) and unilaterally in 4 (4%) skulls. The lateral view radiograph data (n = 50) presented with a bilateral foramen in one subject and unilateral complete CCF in two different subjects. On measurements of the diameters of the complete CCF the mean values observed were 4.06 mm and 4.51 mm on the right side, while that on the left side were 5.15 mm and 4.14 mm. For the incomplete foramina, the mean values for the vertical diameter were 4.48 mm on the right and 4.19 mm on the left side, respectively.

CONCLUSIONS

The frequency of CCF in the present study population of Bihar was much lesser than that of previously studied populations. However, the variation in frequency of different morphological types of CCF was observed to be the same across populations. The variations in CCF's metric data could help in predicting the morphological changes it causes to the clinoidal segment of the internal carotid artery, as well as in distinguishing its varieties.

Evolution of the fabric of cardiovascular science: Saga of an enduring process of refinement

BACKGROUND

The core elements of cardiovascular science have been established by scholarly pursuits of numerous scientists across centuries. In this article, we have tried to trace the evolutionary journey of cardiovascular science from a rudimentary form in ancient period to a robust scientific discipline in modern times.

METHODS

A literature search of relevant, peer-reviewed, published articles was undertaken from indexed databases (Medline & Pubmed, Scopus, Embase, CINAHL Plus, Web of Science and Google Scholar).

RESULTS

Cardiovascular science has its roots in antiquity, when Greek scholars mostly relied on philosophical thoughts and ancient texts. This was followed by addition of few structural details to the theory of circulation by Galen based on animal dissection. Arab scholar Ibn al-Nafis provided new insights regarding circulation pathway in humans. Nevertheless, an erroneous concept prevailed into the onset of European Renaissance. Even with legalization of human dissection, little headway could be made till sixteenth century due to persistent reliance of anatomists on ancient Galenic principles. During seventeenth century, the circulatory pathway (as we know it today) was established due to significant contributions from scholars like Harvey and Malpighi. Their efforts were based on findings from experiments and logical conclusions. Eighteenth century witnessed the emergence of autopsy based methods which led to valuable contributions from Vieussens, Thebesius, Morgagni and Hunter regarding normal and pathologic anatomy of cardiovascular system. With structural details mostly established, researchers during nineteenth century focussed on innovations in diagnostic methods based on human experiments. Further development of advanced human experiment models during twentieth century led to emergence of contemporary treatment methods for various cardiac conditions. In the twenty-first century, cardiovascular science is undergoing comprehensive progress at an exponential rate due to technological advances.

CONCLUSION

The evolutionary journey of cardiovascular science as a discipline across centuries has been intriguing and eventful.

Photocatalytic and photoelectrochemical studies of visible-light active α-Fe2O3–g-C3N4 nanocomposites

Synergistic enhancement in photocatalytic degradation of α-Fe₂O₃–g-C₃N₄ due to an increase in visible-light absorption efficiency and rapid photoinduced charge separation.