Annual recurrence of prokaryotic climax communities in shallow waters of the North Mediterranean

In temperate coastal environments, wide fluctuations of biotic and abiotic factors drive microbiome dynamics. To link recurrent ecological patterns with planktonic microbial communities, we analysed a monthly-sampled 3-year time series of 16S rRNA amplicon sequencing data, alongside environmental variables, collected at two stations in the northern Adriatic Sea. Time series multivariate analyses allowed us to identify three stable, mature communities (climaxes), whose recurrence was mainly driven by changes in photoperiod and temperature. Mixotrophs (e.g., Ca. Nitrosopumilus, SUP05 clade, and Marine Group II) thrived under oligotrophic, low-light conditions, whereas copiotrophs (e.g., NS4 and NS5 clades) bloomed at higher temperatures and substrate availability. The early spring climax was characterised by a more diverse set of amplicon sequence variants, including copiotrophs associated with phytoplankton-derived organic matter degradation, and photo-auto/heterotrophic organisms (e.g., Synechococcus sp., Roseobacter clade), whose rhythmicity was linked to photoperiod lengthening. Through the identification of recurrent climax assemblages, we begin to delineate a typology of ecosystem based on microbiome composition and functionality, allowing for the intercomparison of microbial assemblages among different biomes, a still underachieved goal in the omics era.

Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter

Blooms of gelatinous zooplankton, an important source of protein-rich biomass in coastal waters, often collapse rapidly, releasing large amounts of labile detrital organic matter (OM) into the surrounding water. Although these blooms have the potential to cause major perturbations in the marine ecosystem, their effects on the microbial community and hence on the biogeochemical cycles have yet to be elucidated. We conducted microcosm experiments simulating the scenario experienced by coastal bacterial communities after the decay of a ctenophore (Mnemiopsis leidyi) bloom in the northern Adriatic Sea. Within 24 h, a rapid response of bacterial communities to the M. leidyi OM was observed, characterized by elevated bacterial biomass production and respiration rates. However, compared to our previous microcosm study of jellyfish (Aurelia aurita s.l.), M. leidyi OM degradation was characterized by significantly lower bacterial growth efficiency, meaning that the carbon stored in the OM was mostly respired. Combined metagenomic and metaproteomic analysis indicated that the degradation activity was mainly performed by Pseudoalteromonas, producing a large amount of proteolytic extracellular enzymes and exhibiting high metabolic activity. Interestingly, the reconstructed metagenome-assembled genome (MAG) of Pseudoalteromonas phenolica was almost identical (average nucleotide identity >99%) to the MAG previously reconstructed in our A. aurita microcosm study, despite the fundamental genetic and biochemical differences of the two gelatinous zooplankton species. Taken together, our data suggest that blooms of different gelatinous zooplankton are likely triggering a consistent response from natural bacterial communities, with specific bacterial lineages driving the remineralization of the gelatinous OM.IMPORTANCEJellyfish blooms are increasingly becoming a recurring seasonal event in marine ecosystems, characterized by a rapid build-up of gelatinous biomass that collapses rapidly. Although these blooms have the potential to cause major perturbations, their impact on marine microbial communities is largely unknown. We conducted an incubation experiment simulating a bloom of the ctenophore Mnemiopsis leidyi in the Northern Adriatic, where we investigated the bacterial response to the gelatinous biomass. We found that the bacterial communities actively degraded the gelatinous organic matter, and overall showed a striking similarity to the dynamics previously observed after a simulated bloom of the jellyfish Aurelia aurita s.l. In both cases, we found that a single bacterial species, Pseudoalteromonas phenolica, was responsible for most of the degradation activity. This suggests that blooms of different jellyfish are likely to trigger a consistent response from natural bacterial communities, with specific bacterial species driving the remineralization of gelatinous biomass.

Dissolved gaseous mercury production and sea-air gaseous exchange in impacted coastal environments of the northern Adriatic Sea

The northern Adriatic Sea is well known for mercury (Hg) contamination mainly due to historical Hg mining which took place in Idrija (Slovenia). The formation of dissolved gaseous mercury (DGM) and its subsequent volatilisation can reduce the amount of Hg available in the water column. In this work, the diurnal patterns of both DGM production and gaseous Hg fluxes at the water-air interface were seasonally evaluated in two selected environments within this area, a highly Hg-impacted, confined fish farm (VN: Val Noghera, Italy) and an open coastal zone less impacted by Hg inputs (PR: Bay of Piran, Slovenia). A floating flux chamber coupled with real-time Hg⁰ analyser was used for flux estimation in parallel with DGM concentrations determination through in-field incubations. Substantial DGM production was observed at VN (range = 126.0-711.3 pg L^-1) driven by both strong photoreduction and possibly dark biotic reduction, resulting in higher values in spring and summer and comparable concentrations throughout both day and night. Significantly lower DGM was observed at PR (range = 21.8-183.4 pg L^-1). Surprisingly, comparable Hg⁰ fluxes were found at the two sites (range VN = 7.43-41.17 ng m^-2 h^-1, PR = 0-81.49 ng m^-2 h^-1), likely due to enhanced gaseous exchanges at PR thanks to high water turbulence and to the strong limitation of evasion at VN by water stagnation and expected high DGM oxidation in saltwater. Slight differences between the temporal variation of DGM and fluxes indicate that Hg evasion is more controlled by factors such as water temperature and mixing conditions than DGM concentrations alone. The relative low Hg losses through volatilisation at VN (2.4-4.6% of total Hg) further confirm that static conditions in saltwater environments negatively affect the ability of this process in reducing the amount of Hg retained in the water column, therefore potentially leading to a greater availability for methylation and trophic transfer.

Diversity of Molluscan Assemblage in Relation to Biotic and Abiotic Variables in Brown Algal Forests

Canopy-forming macroalgae, mainly those belonging to the order Fucales, form the so-called brown algal forests, which are among the most productive assemblages in shallow coastal zones. Their vertical, branching canopies increase nearshore primary production, provide nursery areas for juvenile fish, and sustain understory assemblages of smaller algae and both sessile and vagile fauna. The majority of benthic invertebrates inhabiting these forests have larval stages that spend some time floating freely or swimming in the plankton. Therefore, canopy-forming macroalgae play an important role as species collectors related to larval supply and hydrodynamic processes. During the past several decades, brown algal forests have significantly reduced their extension and coverage in the Mediterranean basin, due to multiple interacting natural and anthropogenic pressures, with negative consequences also for the related fauna. The aim of this research was to examine how differences in macrophyte abundance and structure, as well as environmental variables, affect the associated molluscan communities in the shallow northern Adriatic Sea. Sampling sites with well-developed vegetation cover dominated by different canopy-forming species were selected in the shallow infralittoral belt of the northern Adriatic Sea in the spring–summer period of the years 2019 and 2020. Our results confirm the importance of algal forests for molluscan assemblage, with a total of 68 taxa of molluscs found associated with macrophytes. Gastropods showed the highest richness and abundance, followed by bivalves. Mollusc richness and diversity (in terms of biotic indices) were not related with the degree of development of canopy-forming species (in terms of total cover and total volume), nor with the ecological status of benthic macroalgae at different depths. On the contrary, the variability in molluscan taxa abundances was explained by some environmental variables, such as temperature, pH, light, and nitrates concentration.

Gaseous Mercury Exchange from Water–Air Interface in Differently Impacted Freshwater Environments

Gaseous exchanges of mercury (Hg) at the water–air interface in contaminated sites strongly influence its fate in the environment. In this study, diurnal gaseous Hg exchanges were seasonally evaluated by means of a floating flux chamber in two freshwater environments impacted by anthropogenic sources of Hg, specifically historical mining activity (Solkan Reservoir, Slovenia) and the chlor-alkali industry (Torviscosa dockyard, Italy), and in a pristine site, Cavazzo Lake (Italy). The highest fluxes (21.88 ± 11.55 ng m⁻² h⁻¹) were observed at Solkan, coupled with high dissolved gaseous mercury (DGM) and dissolved Hg (THg_D) concentrations. Conversely, low vertical mixing and saltwater intrusion at Torviscosa limited Hg mobility through the water column, with higher Hg concentrations in the deep layer near the contaminated sediments. Consequently, both DGM and THg_D in surface water were generally lower at Torviscosa than at Solkan, resulting in lower fluxes (19.01 ± 12.65 ng m⁻² h⁻¹). However, at this site, evasion may also be limited by high atmospheric Hg levels related to dispersion of emissions from the nearby chlor-alkali plant. Surprisingly, comparable fluxes (15.56 ± 12.78 ng m⁻² h⁻¹) and Hg levels in water were observed at Cavazzo, suggesting a previously unidentified Hg input (atmospheric depositions or local geology). Overall, at all sites the fluxes were higher in the summer and correlated to incident UV radiation and water temperature due to enhanced photo production and diffusivity of DGM, the concentrations of which roughly followed the same seasonal trend.

Bacterial Indicators Are Ubiquitous Members of Pelagic Microbiome in Anthropogenically Impacted Coastal Ecosystem

Coastal zones are exposed to various anthropogenic impacts, such as different types of wastewater pollution, e.g., treated wastewater discharges, leakage from sewage systems, and agricultural and urban runoff. These various inputs can introduce allochthonous organic matter and microbes, including pathogens, into the coastal marine environment. The presence of fecal bacterial indicators in the coastal environment is usually monitored using traditional culture-based methods that, however, fail to detect their uncultured representatives. We have conducted a year-around in situ survey of the pelagic microbiome of the dynamic coastal ecosystem, subjected to different anthropogenic pressures to depict the seasonal and spatial dynamics of traditional and alternative fecal bacterial indicators. To provide an insight into the environmental conditions under which bacterial indicators thrive, a suite of environmental factors and bacterial community dynamics were analyzed concurrently. Analyses of 16S rRNA amplicon sequences revealed that the coastal microbiome was primarily structured by seasonal changes regardless of the distance from the wastewater pollution sources. On the other hand, fecal bacterial indicators were not affected by seasons and accounted for up to 34% of the sequence proportion for a given sample. Even more so, traditional fecal indicator bacteria (Enterobacteriaceae) and alternative wastewater-associated bacteria (Lachnospiraceae, Ruminococcaceae, Arcobacteraceae, Pseudomonadaceae and Vibrionaceae) were part of the core coastal microbiome, i.e., present at all sampling stations. Microbial source tracking and Lagrangian particle tracking, which we employed to assess the potential pollution source, revealed the importance of riverine water as a vector for transmission of allochthonous microbes into the marine system. Further phylogenetic analysis showed that the Arcobacteraceae in our data set was affiliated with the pathogenic Arcobacter cryaerophilus, suggesting that a potential exposure risk for bacterial pathogens in anthropogenically impacted coastal zones remains. We emphasize that molecular analyses combined with statistical and oceanographic models may provide new insights for environmental health assessment and reveal the potential source and presence of microbial indicators, which are otherwise overlooked by a cultivation approach.

Plastics in our ocean as transdisciplinary challenge

This conference report summarizes the current challenges of researching microplastics pollution in the ocean as debated by international experts and stakeholders at a workshop held in San Sebastián, Spain, 1-2 October 2019. The transdisciplinary, co-learning approach of this report stressed the need to incorporate multiple perspective in solving the problem of microplastics and resulted in three proposed actions: (i) filtering microplastics from waste waters; (ii) mandatory ecolabels on plastic products packages; and (iii) circular economy of packaging plastics.

Microbial Processing of Jellyfish Detritus in the Ocean

When jellyfish blooms decay, sinking jellyfish detrital organic matter (jelly-OM), rich in proteins and characterized by a low C:N ratio, becomes a significant source of OM for marine microorganisms. Yet, the key players and the process of microbial jelly-OM degradation and the consequences for marine ecosystems remain unclear. We simulated the scenario potentially experienced by the coastal pelagic microbiome after the decay of a bloom of the cosmopolitan Aurelia aurita s.l. We show that about half of the jelly-OM is instantly available as dissolved organic matter and thus, exclusively and readily accessible to microbes. During a typical decay of an A. aurita bloom in the northern Adriatic Sea about 100 mg of jelly-OM L^-1 becomes available, about 44 μmol L^-1 as dissolved organic carbon (DOC), 13 μmol L^-1 as total dissolved nitrogen, 11 μmol L^-1 of total hydrolyzable dissolved amino acids (THDAA) and 0.6 μmol L^-1 PO₄ ^3-. The labile jelly-OM was degraded within 1.5 days (>98% of proteins, ∼70% of THDAA, 97% of dissolved free amino acids and the entire jelly-DOC pool) by a consortium of Pseudoalteromonas, Alteromonas, and Vibrio. These bacteria accounted for >90% of all metabolically active jelly-OM degraders, exhibiting high bacterial growth efficiencies. This implies that a major fraction of the detrital jelly-OM is rapidly incorporated into biomass by opportunistic bacteria. Microbial processing of jelly-OM resulted in the accumulation of tryptophan, dissolved combined amino acids and inorganic nutrients, with possible implications for biogeochemical cycles.

Trace elements in the estuarine systems of the Gulf of Trieste (northern Adriatic Sea): A chemometric approach to depict partitioning and behaviour of particulate, colloidal and truly dissolved fractions

Estuaries are transitional water systems where the hydrodynamic processes governing water circulation actively influence suspended particle transport and deposition. In the estuarine mixing zone, the strong physico-chemical gradients resulting from the interaction between river freshwater and seawater may affect the distribution, mobility and fate of several potentially toxic compounds, among which trace elements are of major concern. Knowledge regarding the partitioning behaviour of trace elements would provide essential scientific support for the environmental management of estuaries. In this study, trace element occurrence and phase partitioning among suspended particulate matter, colloidal material and the truly dissolved fraction were investigated in the main Italian and Slovenian estuarine environments of the Gulf of Trieste (northern Adriatic Sea). Further information about the water quality at the river mouths was provided and, in addition to the traditional evaluation of single chemical parameters, a multi-way principal component analysis was employed in order to depict disparities among sampling sites, water layers and seasonal conditions with the final aim of evaluating trace element phase partitioning. Results indicated that the suspended particulate matter acts as the main effective vehicle for Cu, Cr, Fe, Ni and Pb, and enhanced adsorption processes resulted in elevated partitioning coefficients, especially for Fe and Pb. Although disparities occurred between sampling sites and seasons, trace elements showing affinity for the solid phase appeared to be partially bound to the colloidal material. Conversely, As and Cs prevailed in the truly dissolved fraction, especially in seawater and showed scarce affinity for both the suspended particles and colloids.

Between source and sea: The role of wastewater treatment in reducing marine microplastics

Wastewater treatment plants (WWTPs) are a focal point for the removal of microplastic (MP) particles before they are discharged into aquatic environments. WWTPs are capable of removing substantial quantities of larger MP particles but are inefficient in removing particles with any one dimension of less than 100 μm, with influents and effluents tending to have similar quantities of these smaller particles. As a single WWTP may release >100 billion MP particles annually, collectively WWTPs are significant contributors to the problem of MP pollution of global surface waters. Currently, there are no policies or regulations requiring the removal of MPs during wastewater treatment, but as concern about MP pollution grows, the potential for wastewater technologies to capture particles before they reach surface waters has begun to attract attention. There are promising technologies in various stages of development that may improve the removal of MP particles from wastewater. Better incentivization could speed up the research, development and adoption of innovative practices. This paper describes the current state of knowledge regarding MPs, wastewater and relevant policies that could influence the development and deployment of new technologies within WWTPs. We review existing technologies for capturing very small MP particles and examine new developments that may have the potential to overcome the shortcomings of existing methods. The types of collaborations needed to encourage and incentivize innovation within the wastewater sector are also discussed, specifically strong partnerships among scientific and engineering researchers, industry stakeholders, and policy decision makers.

Oceanographic characteristics of the Adriatic Sea - Support to secondary HAOP spread through natural dispersal

Vessels, specifically ballast water and hull fouling, are a major vector for the introduction of non-indigenous species (NIS) in European seas. The Mediterranean is one of the world's marine regions where their invasion is heaviest. The shallow Adriatic basin is a highly sensitive area that is already experiencing its consequences. The secondary spread of NIS over a wider area through natural dispersion is a complex process that depends on a wide range of oceanographic factors. This work analysed the dataset of the BALMAS project, in whose framework twelve ports in the Adriatic Sea were subjected to a Port Baseline Survey (PBS), to estimate the natural spread of NIS organisms from their port of arrival to the wider Adriatic basin. Its findings indicate that the prevailing water circulation patterns facilitate the natural dispersal of harmful aquatic organisms and pathogens (HAOP).

Mercury speciation in various aquatic systems using passive sampling technique of diffusive gradients in thin-film

Mercury (Hg) is one of the primary health concerns in natural and urbanised environments due to past and present natural and anthropogenic emissions. Its environmental cycle is driven by redox reactions, microbial metabolism and organic matter (OM) interactions, which may all lead to formation of bioaccumulative organic Hg species; methylmercury (MeHg), with damaging consequences for human and ecosystem health. Hence, Hg lability and bioavailability has been the focus of many investigations and assessed with a variety of chemical proxies in order to improve understanding of the conditions that lead to enhanced bioavailability of Hg and its species. We investigated Hg labile species with Diffusive Gradient in Thin-film technique (DGT) in the water column and sediment of Zenne River (Brussels, Belgium) and Gulf of Trieste (North Adriatic). They represent two contemporary important Hg-impacted areas; the former by anthropogenic urban pollution, and the latter by historic pollution from Hg mining. Hg speciation of labile inorganic and methylmercury in these two environments was not yet investigated using DGT technique. The results show labile Hg species changing with season in the water column of Zenne River, while the sediments are the source of bioavailable MeHg to the water column that is transported further creating a halo effect in the region. Values of labile Hg species for water column and sediments in Gulf of Trieste differ from previous research, highlighting the need for more investigation into Hg bioavailability. MeHg/THg ratios were compared to other sampling methods for labile Hg species.

Jellyfish-Associated Microbiome in the Marine Environment: Exploring Its Biotechnological Potential

Despite accumulating evidence of the importance of the jellyfish-associated microbiome to jellyfish, its potential relevance to blue biotechnology has only recently been recognized. In this review, we emphasize the biotechnological potential of host⁻microorganism systems and focus on gelatinous zooplankton as a host for the microbiome with biotechnological potential. The basic characteristics of jellyfish-associated microbial communities, the mechanisms underlying the jellyfish-microbe relationship, and the role/function of the jellyfish-associated microbiome and its biotechnological potential are reviewed. It appears that the jellyfish-associated microbiome is discrete from the microbial community in the ambient seawater, exhibiting a certain degree of specialization with some preferences for specific jellyfish taxa and for specific jellyfish populations, life stages, and body parts. In addition, different sampling approaches and methodologies to study the phylogenetic diversity of the jellyfish-associated microbiome are described and discussed. Finally, some general conclusions are drawn from the existing literature and future research directions are highlighted on the jellyfish-associated microbiome.

Selenium and Mercury Interactions in Apex Predators from the Gulf of Trieste (Northern Adriatic Sea)

Since the environmental levels of selenium (Se) can moderate the bioaccumulation and toxicity of mercury (Hg) in marine organisms, their interactions were studied in seawater, sediments, plankton and the benthic (Bull ray Pteromylaeus bovinus, Eagle ray Myliobatis aquila) and the pelagic (Pelagic stingray Dasyiatis violacea) rays, as apex predators in the Gulf of Trieste (Northern Adriatic Sea). Male and female rays showed no difference in the Se contents in muscle tissue. Pelagic species contained higher Se levels in muscle but slightly lower levels in the livers of both genders. The Hg/Se ratios in seawater dissolved and colloidal fractions, plankton and sediment were <0.5, while those in particulate matter were <1.3. In benthic ray species, a parallel increase in Se and Hg in muscle was observed, so that an increased in Hg (MeHg) bioaccumulation results in Se coaccumulation. The Hg/Se ratios (molar) in muscle and liver of pelagic and benthic rays were <1.4 and <0.7, respectively. The low levels of Hg in muscle and liver in all the ray species corresponded to low Hg/Se ratios and increases in muscle and liver to 1 at 7 µg/g, dry weight (dw) and 5 µg/g dw, respectively, i.e., about 1.6 µg/g wet weight (ww).

Accumulation of 210Po in coastal waters (Gulf of Trieste, northern Adriatic Sea)

The total activity of ²¹⁰Po was determined by alpha-spectrometry in various samples (matrices) collected in the Gulf of Trieste (northern Adriatic Sea) where fresh water inflows, especially from the Isonzo River in the northern part, affect water quality. Observed ²¹⁰Po levels were: 1) 0.56-3.75 mBq/L in the dissolved phase (<0.45 μm) in the seawater column and local rivers, 2) 0.35-3.11 mBq/L (400-2300 Bq/kg, dry weight, dw) in suspended particulate matter (SPM, 0.45-20 μm) in the seawater column and local rivers, 3) 40 (Isonzo River) -158 Bq/kg (in a surface sediment cores collected in a NS transect in the gulf and sectioned to the depth of 20 cm) and 4) 239 (autumn) - 415 to 1800 (spring) Bq/kg (dw) in meso(zoo)plankton (>200 μm). In seawater and tributaries, up to 80% (mean 49%) of total ²¹⁰Po was found in particulate form. In sediments, slightly higher levels were encountered in the Isonzo prodelta and in the central (depocenter) part of the gulf. K_D (L/kg) calculated between seawater and SPM, and seawater and sediment amounted to about 5 × 10⁶ and 6 × 10⁴, respectively. Lower autumn ²¹⁰Po levels can be a consequence of biological dilution by higher mesozooplankton biomass in the autumn compared to spring. Plankton fractionation revealed in general the highest levels in the >200 μm mesoplankton fraction (239-1800 Bq/kg) followed by 50-200 μm (388-996 Bq/kg) and 20-50 μm (318-810 Bq/kg) microplankton fractions. Obtained data show higher ²¹⁰Po levels in all matrices analyzed in the Gulf of Trieste compared to other Adriatic (central Adriatic) and western Mediterranean areas. The ²¹⁰Po/²¹⁰Pb ratios in water, plankton and sediments were mostly below or around 1, while this ratio was much higher at higher trophic levels (up to about 50), reflecting a preferential bioaccumulation of ²¹⁰Po over ²¹⁰Pb. ²¹⁰Po accumulation between seawater and SPM and seawater and mesozooplankton amounted to 3.7 × 10⁴ and 1.1 × 10⁴, respectively, similar to other Adriatic areas. Comparison of the relative importance of pelagic and benthic bioaccumulation pathways, excluding the filter feeder bivalves, suggests greater accumulation in pelagic-feeding species.