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Mondal H, Chattaraj PK. CO 2 reduction using aluminum hydride: Generation of in-situ frustrated Lewis pairs and small molecule activation therein. J Comput Chem 2024; 45:1098-1111. [PMID: 38261518 DOI: 10.1002/jcc.27285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 11/27/2023] [Accepted: 11/28/2023] [Indexed: 01/25/2024]
Abstract
CO2 reduction is appealing for the long-term production of high-value fuels and chemicals. Herein, using density functional theory (DFT) based calculations, we study the CO2 reduction pathway to formic acid using aluminum hydride and phosphine derivatives. Our primary focus is on aluminum hydride derivatives, aimed at improving the efficiency of the CO2 reduction process. Substituents with σ-donating properties at the aluminum center are discovered to lower the activation barriers. We demonstrate how di-tert-butylphosphine oxide (LB-O)/di-tert-butylphosphine sulfide (LB-S)/di-tert-butylphosphanimine (LB-N) work together with aluminum hydride to facilitate CO2 reduction process and generate in-situ frustrated Lewis pairs (FLPs), such as FLP-O, FLP-S, and FLP-N. The activation strain model (ASM) analysis reveals the significance of strain energy in determining activation barriers. EDA-NOCV and PIO analyses elucidate the orbital interactions at the corresponding transition states. Furthermore, the study delves into the activation of various small molecules, such as dihydrogen, acetylene, ethylene, carbon dioxide, nitrous oxide, and acetonitrile, using those in-situ generated FLPs. The study highlights the low activation barriers and emphasizes the potential for small molecule activation in this context.
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Affiliation(s)
- Himangshu Mondal
- Department of Chemistry, Indian Institute of Technology, Kharagpur, India
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2
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Chakraborty B, Pal R, Pratihar DK, Chattaraj PK. Bonobo Optimizer: A New Tool Toward the Global Optimization of Small Atomic Clusters. J Phys Chem A 2024. [PMID: 38696762 DOI: 10.1021/acs.jpca.4c02024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/04/2024]
Abstract
In the realm of structural and bonding investigations within chemical systems, elucidating global minimum energy configurations stands as a paramount goal. As the systems increase in size and complexity, this pursuit becomes progressively challenging. Herein, we introduce Bonobo optimizer (BO), a metaheuristic algorithm inspired by the social and reproductive behaviors of bonobos, to the domain of chemical problem solving. Focusing on small carbon clusters, this study systematically evaluates BO's performance, showcasing its robustness and efficiency. Parametric studies highlight the algorithm's adaptability, consistently converging to global minimum structures. Rigorous statistical validation supports the results, and a comparative analysis against established global optimization algorithms underlines BO's superior efficiency. This exploration extends the applicability of BO to the optimization of atomic clusters, providing a promising avenue for future advancements in computational chemistry.
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Affiliation(s)
- Bhrigu Chakraborty
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Ranita Pal
- Advanced Technology Development Centre, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Dilip Kumar Pratihar
- Department of Mechanical Engineering, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Birla Institute of Technology, Mesra, Ranchi, Jharkhand 835215, India
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Mondal H, Chattaraj PK. Unraveling Reactivity Pathways: Dihydrogen Activation and Hydrogenation of Multiple Bonds by Pyramidalized Boron-Based Frustrated Lewis Pairs. ChemistryOpen 2024; 13:e202300179. [PMID: 38117941 PMCID: PMC11004477 DOI: 10.1002/open.202300179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 11/24/2023] [Indexed: 12/22/2023] Open
Abstract
The activation of H2 by pyramidalized boron-based frustrated Lewis Pairs (FLPs) (B/E-FLP systems where "E" refers to N, P, As, Sb, and Bi) have been explored using density functional theory (DFT) based computational study. The activation pathway for the entire process is accurately characterized through the utilization of the activation strain model (ASM) of reactivity, shedding light on the underlying physical factors governing the process. The study also explores the hydrogenation process of multiple bonds with the help of B/N-FLP. The research findings demonstrate that the liberation of activated dihydrogen occurs in a synchronized, albeit noticeably asynchronous, fashion. The transformation is extensively elucidated using the activation strain model and the energy decomposition analysis. This approach suggests a co-operative double hydrogen-transfer mechanism, where the B-H hydride triggers a nucleophilic attack on the carbon atom of the multiple bonds, succeeded by the migration of the protic N-H.
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Affiliation(s)
- Himangshu Mondal
- Department of ChemistryIndian Institute of TechnologyKharagpur721302India
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Pal R, Chattaraj PK. Structure, stability, reactivity and bonding in noble gas compounds. Phys Chem Chem Phys 2024; 26:9856-9866. [PMID: 38497096 DOI: 10.1039/d3cp06321f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2024]
Abstract
Noble gases (Ngs) are recognized as the least reactive elements due to their fully filled valence electronic configuration. Their reluctance to engage in chemical bond formation necessitates extreme conditions such as low temperatures, high pressures, and reagents with high reactivity. In this Perspective, we discuss our endeavours in the theoretical prediction of viable Ng complexes, emphasizing the pursuit of synthesizing them under nearly ambient conditions. Our research encompasses various bonding categories of Ng complexes and our primary aim is to comprehend the bonding mechanisms within these complexes, utilizing state-of-the-art theoretical tools such as natural bond orbital, energy decomposition, and electron density analyses. These complex types manifest distinct bonding scenarios. In the non-insertion type, the donor-acceptor interaction strength hinges on the polarizing ability of the binding atom, drawing the electron density of the Ng towards itself. In certain instances, especially with heavier Ng elements, this interaction reaches a magnitude where it can be considered a covalent bond. Conversely, in most insertion cases, the Ng prefers to share electrons to form a covalent bond on one side while interacting electrostatically on the other side. In rare cases, both bonds may be portrayed as electron-shared covalent bonds. Furthermore, a host cage serves as an excellent platform to explore the limits of achieving Ng-Ng bonds (even for helium), under high pressure.
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Affiliation(s)
- Ranita Pal
- Advanced Technology Development Centre, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Birla Institute of Technology Mesra, Ranchi, Jharkhand 835215, India.
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Arepalli N, Mondal S, Chakraborty D, Chattaraj PK. Impact of Static-Oriented Electric Fields on the Kinetics of Some Representative Suzuki-Miyaura and Metal-Cluster Mediated Reactions. Molecules 2023; 28:6169. [PMID: 37630421 PMCID: PMC10459314 DOI: 10.3390/molecules28166169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Revised: 08/13/2023] [Accepted: 08/18/2023] [Indexed: 08/27/2023] Open
Abstract
In order to examine the effect of oriented (static) electric fields (OEF) on the kinetics of some representative Suzuki-Miyaura and metal-cluster mediated reactions at ambient temperatures, density functional theory-based calculations are reported herein. Results indicate that, in general, OEF can facilitate the kinetics of the concerned reactions when applied along the suitable direction (parallel or anti-parallel with respect to the reaction axis). The reverse effect happens if the direction of the OEF is flipped. OEF (when applied along the 'right' direction) helps to polarize the transition states in the desired direction, thereby facilitating favorable bonding interactions. Given the growing need for finding appropriate catalysts among the scientific community, OEF can prove to be a vital route for the same.
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Affiliation(s)
- Navya Arepalli
- Department of Chemistry, Birla Institute of Technology, Mesra, Ranchi 835215, Jharkhand, India
| | - Sukanta Mondal
- Department of Education, A. M. School of Educational Sciences, Assam University, Silchar 788011, Assam, India
| | - Debdutta Chakraborty
- Department of Chemistry, Birla Institute of Technology, Mesra, Ranchi 835215, Jharkhand, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Birla Institute of Technology, Mesra, Ranchi 835215, Jharkhand, India
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Abstract
The outstanding capability of Frustrated Lewis Pair (FLP) catalysts to activate small molecules has gained significant attention in recent times. Reactivity of FLP is further extended toward the hydrogenation of various unsaturated species. Over the past decade, this unique catalysis concept has been successfully expanded to heterogeneous catalysis as well. The present review article gives a brief survey on several studies on this field. A thorough discussion on quantum chemical studies concerning the activation of H2 is provided. The role of aromaticity and boron-ligand cooperation on the reactivity of FLP is discussed in the Review. How FLP can activate other small molecules by cooperative action of its Lewis centers is also discussed. Further, the discussion is shifted to the hydrogenation of various unsaturated species and the mechanism regarding this process. It also discusses the latest theoretical advancements in the application of FLP in heterogeneous catalysis across various domains, such as two-dimensional materials, functionalized surfaces, and metal oxides. A deeper understanding of the catalytic process may assist in devising new heterogeneous FLP catalysts through experimental design.
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Affiliation(s)
- Manas Ghara
- Department of Chemistry, Indian Institute of Technology, Kharagpur 721302, India
| | - Himangshu Mondal
- Department of Chemistry, Indian Institute of Technology, Kharagpur 721302, India
| | - Ranita Pal
- Advanced Technology Development Centre, Indian Institute of Technology, Kharagpur 721302, India
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Pal R, Das P, Chattaraj PK. Global Optimization: A Soft Computing Perspective. J Phys Chem Lett 2023; 14:3468-3482. [PMID: 37011157 DOI: 10.1021/acs.jpclett.3c00246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Tackling the problem of global optimization is one of the most important domains that physicists and chemists are working on. The use of soft computing (SC) techniques has made this easier by reducing nonlinearity and instability and making it technologically rich. This Perspective aims at explaining the basic mathematical models of the most efficient and commonly used SC techniques in computational chemistry for finding the global minimum (GM) energy structures of chemical systems. In this Perspective, we discuss the global optimizations of several chemical systems that our group has worked on using CNN, PSO, FA, ABC, BO, and some hybrid techniques, two of which are interfaced to achieve better-quality results.
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Affiliation(s)
- Ranita Pal
- Advanced Technology Development Centre, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Prasenjit Das
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
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Pal R, Chattaraj PK. On the Nature of the Partial Covalent Bond between Noble Gas Elements and Noble Metal Atoms. Molecules 2023; 28:molecules28073253. [PMID: 37050016 PMCID: PMC10096529 DOI: 10.3390/molecules28073253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Revised: 04/04/2023] [Accepted: 04/04/2023] [Indexed: 04/14/2023] Open
Abstract
This article provides a discussion on the nature of bonding between noble gases (Ng) and noble metals (M) from a quantum chemical perspective by investigating compounds such as NgMY (Y=CN, O, NO3, SO4, CO3), [NgM-(bipy)]+, NgMCCH, and MCCNgH complexes, where M=Cu, Ag, Au and Ng=Kr-Rn, with some complexes containing the lighter noble gas atoms as well. Despite having very low chemical reactivity, noble gases have been observed to form weak bonds with noble metals such as copper, gold, and silver. In this study, we explore the factors that contribute to this unusual bonding behavior, including the electronic structure of the atoms involved and the geometric configuration of the concerned fragments. We also investigate the metastable nature of the resulting complexes by studying the energetics of their possible dissociation and internal isomerization channels. The noble gas-binding ability of the bare metal cyanides are higher than most of their bromide counterparts, with CuCN and AgCN showing higher affinity than their chloride analogues as well. In contrast, the oxides seem to have lower binding power than their corresponding halides. In the oxide and the bipyridyl complexes, the Ng-binding ability follows the order Au > Cu > Ag. The dissociation energies calculated, considering the zero-point energy correction for possible dissociation channels, increase as we move down the noble gas group. The bond between the noble gases and the noble metals in the complexes are found to have comparable weightage of orbital and electrostatic interactions, suggestive of a partial covalent nature. The same is validated from the topological analysis of electron density.
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Affiliation(s)
- Ranita Pal
- Advanced Technology Development Centre, Indian Institute of Technology, Kharagpur 721302, India
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Pal R, Jana G, Chattaraj PK. Structure and stability of a new set of noble gas insertion compounds, XNgOPO(OH)2 (X = F, Cl, Br; Ng = Kr, Xe, Rn): an in silico investigation. Theor Chem Acc 2023. [DOI: 10.1007/s00214-023-02973-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2023]
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Mondal S, Jana G, Srivastava HK, Sastry GN, Chattaraj PK. Structure and stability of the sH binary hydrate cavity and host-guest versus guest-guest interactions therein: A DFT approach. J Comput Chem 2023; 44:1446-1453. [PMID: 36916825 DOI: 10.1002/jcc.27102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Revised: 02/17/2023] [Accepted: 02/22/2023] [Indexed: 03/16/2023]
Abstract
The intrinsic ability of clathrate hydrates to encage gaseous molecules is explored. Encapsulation ability depends on the cavity size and the type of guest gaseous species in addition to the physical parameters, temperature and pressure. Here we have reported the structure, stability and nature of interaction in dissimilar guest occupied sH hydrate cavity. Diatomic gas molecules and small polyatomic hydrocarbons are considered as guests. The irregular icosahedron (512 68 ) cavity of sH hydrate is the host. Different thermodynamic parameters for the guest molecules encapsulation were calculated using three different hybrid DFT functionals, B3LYP, M05-2X, M06, and moreover using dispersion correction (PBE0-D3). With the consideration of large H-bonded systems the 6-31G* and cc-pVTZ basis sets were used for two set of computations. To disclose the nature of interaction between the host-guest systems as well as the interaction between the guest molecules inside the host the non-covalent interaction (NCI) indices and energy decomposition analysis (EDA) were done. Impact of host-guest and guest-guest interactions are discussed.
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Affiliation(s)
- Sukanta Mondal
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, India.,Department of Education, A. M. School of Educational Sciences, Assam University, Silchar, Assam, India
| | - Gourhari Jana
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, India.,Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, Michigan, USA
| | - Hemant K Srivastava
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati, Assam, India.,Department of Medicinal Chemistry, NIPER, Guwahati, Assam, India
| | - Garikapati N Sastry
- Centre for Molecular Modeling, CSIR-Indian Institute of Chemical Technology, Hyderabad, India.,Advanced Computation and Data Sciences Division, CSIR-North East Institute of Science and Technology, Jorhat, Assam, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, India
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Jha R, Kumar Chattaraj P. Effect of confinement on the structure, stability and aromaticity of Be32-. Chem Phys Lett 2023. [DOI: 10.1016/j.cplett.2023.140390] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
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Abstract
This review aims to be a comprehensive, authoritative, critical, and accessible review of general interest to the chemistry community; because the electrophilicity index is a very useful global reactivity descriptor defined within a conceptual density functional theory framework. Our group has also introduced electrophilicity based new global and local reactivity descriptors and also new associated electronic structure principles, which are important indicators of structure, stability, bonding, reactivity, interactions, and dynamics in a wide variety of physico-chemical systems and processes. This index along with its local counterpart augmented by the associated electronic structure principles could properly explain molecular vibrations, internal rotations and various types of chemical reactions. The concept of the electrophilicity index has been extended to dynamical processes, excited states, confined environment, spin-dependent and temperature-dependent situations, biological activity, site selectivity, aromaticity, charge removal and acceptance, presence of external perturbation through solvents, external electric and magnetic fields, and so forth. Although electrophilicity and its local variant can adequately interpret the behavior of a wide variety of systems and different physico-chemical processes involving them, their predictive potential remains to be explored. An exhaustive review on all these aspects will set the tone of the future research in that direction.
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Affiliation(s)
- Ranita Pal
- Advanced Technology Development Centre, Indian Institute of Technology Kharagpur, Kharagpur, India
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13
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Das P, Chattaraj PK. BSinGe4−n+ (n = 0−2): prospective systems containing planar tetracoordinate boron (ptB). J CHEM SCI 2022. [DOI: 10.1007/s12039-022-02121-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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Pal R, Chattaraj PK. Can the Fluxionality in Borospherene Influence the Confinement-Induced Bonding between Two Noble Gas Atoms? Molecules 2022; 27:molecules27248683. [PMID: 36557816 PMCID: PMC9787885 DOI: 10.3390/molecules27248683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2022] [Revised: 11/22/2022] [Accepted: 12/04/2022] [Indexed: 12/13/2022]
Abstract
A density functional theory study is performed to determine the stability and bonding in the neon dimer inside the B30N30 fullerene cage, the fluxional B40 cage, and within non-fluxional cages such as B12N12 and C60. The nature of bonding in the Ne2 encapsulated B40 is compared with the that in other cages in an attempt to determine whether any possible alterations are brought about by the dynamical nature of the host cage apart from the associated confinement effects. The bonding analysis includes the natural bond order (NBO), Bader's Atoms-in-Molecules electron density analysis (AIM), and energy decomposition analysis (EDA), revealing the non-covalent nature of the interactions between the Ne atoms and that between the Ne and the cage atoms. The formation of all the Ne2@cage systems is thermochemically unfavourable, the least being that for the B30N30 cage, which can easily be made favourable at lower temperatures. The Ne-Ne distance is lowest in the smallest cage and increases as the cage size increase due to steric relaxation experienced by the dimer. The dynamical picture of the systems is investigated by performing ab initio molecular dynamics simulations using the atom-centred density matrix propagation (ADMP) technique, which shows the nature of the movement of the dimer inside the cages, and by the fact that since it moves as a single entity, a weak bonding force holds them together, apart from their proven kinetic stability.
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Affiliation(s)
- Ranita Pal
- Advanced Technology Development Centre, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
- Correspondence:
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Teale AM, Helgaker T, Savin A, Adamo C, Aradi B, Arbuznikov AV, Ayers PW, Baerends EJ, Barone V, Calaminici P, Cancès E, Carter EA, Chattaraj PK, Chermette H, Ciofini I, Crawford TD, De Proft F, Dobson JF, Draxl C, Frauenheim T, Fromager E, Fuentealba P, Gagliardi L, Galli G, Gao J, Geerlings P, Gidopoulos N, Gill PMW, Gori-Giorgi P, Görling A, Gould T, Grimme S, Gritsenko O, Jensen HJA, Johnson ER, Jones RO, Kaupp M, Köster AM, Kronik L, Krylov AI, Kvaal S, Laestadius A, Levy M, Lewin M, Liu S, Loos PF, Maitra NT, Neese F, Perdew JP, Pernal K, Pernot P, Piecuch P, Rebolini E, Reining L, Romaniello P, Ruzsinszky A, Salahub DR, Scheffler M, Schwerdtfeger P, Staroverov VN, Sun J, Tellgren E, Tozer DJ, Trickey SB, Ullrich CA, Vela A, Vignale G, Wesolowski TA, Xu X, Yang W. DFT exchange: sharing perspectives on the workhorse of quantum chemistry and materials science. Phys Chem Chem Phys 2022; 24:28700-28781. [PMID: 36269074 PMCID: PMC9728646 DOI: 10.1039/d2cp02827a] [Citation(s) in RCA: 54] [Impact Index Per Article: 27.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Accepted: 08/09/2022] [Indexed: 12/13/2022]
Abstract
In this paper, the history, present status, and future of density-functional theory (DFT) is informally reviewed and discussed by 70 workers in the field, including molecular scientists, materials scientists, method developers and practitioners. The format of the paper is that of a roundtable discussion, in which the participants express and exchange views on DFT in the form of 302 individual contributions, formulated as responses to a preset list of 26 questions. Supported by a bibliography of 777 entries, the paper represents a broad snapshot of DFT, anno 2022.
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Affiliation(s)
- Andrew M. Teale
- School of Chemistry, University of Nottingham, University ParkNottinghamNG7 2RDUK
| | - Trygve Helgaker
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, N-0315 Oslo, Norway.
| | - Andreas Savin
- Laboratoire de Chimie Théorique, CNRS and Sorbonne University, 4 Place Jussieu, CEDEX 05, 75252 Paris, France.
| | - Carlo Adamo
- PSL University, CNRS, ChimieParisTech-PSL, Institute of Chemistry for Health and Life Sciences, i-CLeHS, 11 rue P. et M. Curie, 75005 Paris, France.
| | - Bálint Aradi
- Bremen Center for Computational Materials Science, University of Bremen, P.O. Box 330440, D-28334 Bremen, Germany.
| | - Alexei V. Arbuznikov
- Technische Universität Berlin, Institut für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7Straße des 17. Juni 13510623Berlin
| | | | - Evert Jan Baerends
- Department of Chemistry and Pharmaceutical Sciences, Faculty of Science, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands.
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56125 Pisa, Italy.
| | - Patrizia Calaminici
- Departamento de Química, Centro de Investigación y de Estudios Avanzados (Cinvestav), CDMX, 07360, Mexico.
| | - Eric Cancès
- CERMICS, Ecole des Ponts and Inria Paris, 6 Avenue Blaise Pascal, 77455 Marne-la-Vallée, France.
| | - Emily A. Carter
- Department of Mechanical and Aerospace Engineering and the Andlinger Center for Energy and the Environment, Princeton UniversityPrincetonNJ 08544-5263USA
| | | | - Henry Chermette
- Institut Sciences Analytiques, Université Claude Bernard Lyon1, CNRS UMR 5280, 69622 Villeurbanne, France.
| | - Ilaria Ciofini
- PSL University, CNRS, ChimieParisTech-PSL, Institute of Chemistry for Health and Life Sciences, i-CLeHS, 11 rue P. et M. Curie, 75005 Paris, France.
| | - T. Daniel Crawford
- Department of Chemistry, Virginia TechBlacksburgVA 24061USA,Molecular Sciences Software InstituteBlacksburgVA 24060USA
| | - Frank De Proft
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium.
| | | | - Claudia Draxl
- Institut für Physik and IRIS Adlershof, Humboldt-Universität zu Berlin, 12489 Berlin, Germany. .,Fritz-Haber-Institut der Max-Planck-Gesellschaft, 14195 Berlin, Germany
| | - Thomas Frauenheim
- Bremen Center for Computational Materials Science, University of Bremen, P.O. Box 330440, D-28334 Bremen, Germany. .,Beijing Computational Science Research Center (CSRC), 100193 Beijing, China.,Shenzhen JL Computational Science and Applied Research Institute, 518110 Shenzhen, China
| | - Emmanuel Fromager
- Laboratoire de Chimie Quantique, Institut de Chimie, CNRS/Université de Strasbourg, 4 rue Blaise Pascal, 67000 Strasbourg, France.
| | - Patricio Fuentealba
- Departamento de Física, Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, Chile.
| | - Laura Gagliardi
- Department of Chemistry, Pritzker School of Molecular Engineering, The James Franck Institute, and Chicago Center for Theoretical Chemistry, The University of Chicago, Chicago, Illinois 60637, USA.
| | - Giulia Galli
- Pritzker School of Molecular Engineering and Department of Chemistry, The University of Chicago, Chicago, IL, USA.
| | - Jiali Gao
- Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen 518055, China. .,Department of Chemistry, University of Minnesota, Minneapolis, MN 55455, USA
| | - Paul Geerlings
- Research Group of General Chemistry (ALGC), Vrije Universiteit Brussel (VUB), Pleinlaan 2, B-1050 Brussels, Belgium.
| | - Nikitas Gidopoulos
- Department of Physics, Durham University, South Road, Durham DH1 3LE, UK.
| | - Peter M. W. Gill
- School of Chemistry, University of SydneyCamperdown NSW 2006Australia
| | - Paola Gori-Giorgi
- Department of Chemistry and Pharmaceutical Sciences, Amsterdam Institute of Molecular and Life Sciences (AIMMS), Faculty of Science, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands.
| | - Andreas Görling
- Chair of Theoretical Chemistry, University of Erlangen-Nuremberg, Egerlandstrasse 3, 91058 Erlangen, Germany.
| | - Tim Gould
- Qld Micro- and Nanotechnology Centre, Griffith University, Gold Coast, Qld 4222, Australia.
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, University of Bonn, Beringstrasse 4, 53115 Bonn, Germany.
| | - Oleg Gritsenko
- Department of Chemistry and Pharmaceutical Sciences, Amsterdam Institute of Molecular and Life Sciences (AIMMS), Faculty of Science, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands.
| | - Hans Jørgen Aagaard Jensen
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, DK-5230 Odense M, Denmark.
| | - Erin R. Johnson
- Department of Chemistry, Dalhousie UniversityHalifaxNova ScotiaB3H 4R2Canada
| | - Robert O. Jones
- Peter Grünberg Institut PGI-1, Forschungszentrum Jülich52425 JülichGermany
| | - Martin Kaupp
- Technische Universität Berlin, Institut für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7, Straße des 17. Juni 135, 10623, Berlin.
| | - Andreas M. Köster
- Departamento de Química, Centro de Investigación y de Estudios Avanzados (Cinvestav)CDMX07360Mexico
| | - Leeor Kronik
- Department of Molecular Chemistry and Materials Science, Weizmann Institute of Science, Rehovoth, 76100, Israel.
| | - Anna I. Krylov
- Department of Chemistry, University of Southern CaliforniaLos AngelesCalifornia 90089USA
| | - Simen Kvaal
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, N-0315 Oslo, Norway.
| | - Andre Laestadius
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, N-0315 Oslo, Norway.
| | - Mel Levy
- Department of Chemistry, Tulane University, New Orleans, Louisiana, 70118, USA.
| | - Mathieu Lewin
- CNRS & CEREMADE, Université Paris-Dauphine, PSL Research University, Place de Lattre de Tassigny, 75016 Paris, France.
| | - Shubin Liu
- Research Computing Center, University of North Carolina, Chapel Hill, NC 27599-3420, USA. .,Department of Chemistry, University of North Carolina, Chapel Hill, NC 27599-3290, USA
| | - Pierre-François Loos
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, France.
| | - Neepa T. Maitra
- Department of Physics, Rutgers University at Newark101 Warren StreetNewarkNJ 07102USA
| | - Frank Neese
- Max Planck Institut für Kohlenforschung, Kaiser Wilhelm Platz 1, D-45470 Mülheim an der Ruhr, Germany.
| | - John P. Perdew
- Departments of Physics and Chemistry, Temple UniversityPhiladelphiaPA 19122USA
| | - Katarzyna Pernal
- Institute of Physics, Lodz University of Technology, ul. Wolczanska 219, 90-924 Lodz, Poland.
| | - Pascal Pernot
- Institut de Chimie Physique, UMR8000, CNRS and Université Paris-Saclay, Bât. 349, Campus d'Orsay, 91405 Orsay, France.
| | - Piotr Piecuch
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, USA. .,Department of Physics and Astronomy, Michigan State University, East Lansing, Michigan 48824, USA
| | - Elisa Rebolini
- Institut Laue Langevin, 71 avenue des Martyrs, 38000 Grenoble, France.
| | - Lucia Reining
- Laboratoire des Solides Irradiés, CNRS, CEA/DRF/IRAMIS, École Polytechnique, Institut Polytechnique de Paris, F-91120 Palaiseau, France. .,European Theoretical Spectroscopy Facility
| | - Pina Romaniello
- Laboratoire de Physique Théorique (UMR 5152), Université de Toulouse, CNRS, UPS, France.
| | - Adrienn Ruzsinszky
- Department of Physics, Temple University, Philadelphia, Pennsylvania 19122, USA.
| | - Dennis R. Salahub
- Department of Chemistry, Department of Physics and Astronomy, CMS – Centre for Molecular Simulation, IQST – Institute for Quantum Science and Technology, Quantum Alberta, University of Calgary2500 University Drive NWCalgaryAlbertaT2N 1N4Canada
| | - Matthias Scheffler
- The NOMAD Laboratory at the FHI of the Max-Planck-Gesellschaft and IRIS-Adlershof of the Humboldt-Universität zu Berlin, Faradayweg 4-6, D-14195, Germany.
| | - Peter Schwerdtfeger
- Centre for Theoretical Chemistry and Physics, The New Zealand Institute for Advanced Study, Massey University Auckland, 0632 Auckland, New Zealand.
| | - Viktor N. Staroverov
- Department of Chemistry, The University of Western OntarioLondonOntario N6A 5B7Canada
| | - Jianwei Sun
- Department of Physics and Engineering Physics, Tulane University, New Orleans, LA 70118, USA.
| | - Erik Tellgren
- Hylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, N-0315 Oslo, Norway.
| | - David J. Tozer
- Department of Chemistry, Durham UniversitySouth RoadDurhamDH1 3LEUK
| | - Samuel B. Trickey
- Quantum Theory Project, Deptartment of Physics, University of FloridaGainesvilleFL 32611USA
| | - Carsten A. Ullrich
- Department of Physics and Astronomy, University of MissouriColumbiaMO 65211USA
| | - Alberto Vela
- Departamento de Química, Centro de Investigación y de Estudios Avanzados (Cinvestav), CDMX, 07360, Mexico.
| | - Giovanni Vignale
- Department of Physics, University of Missouri, Columbia, MO 65203, USA.
| | - Tomasz A. Wesolowski
- Department of Physical Chemistry, Université de Genève30 Quai Ernest-Ansermet1211 GenèveSwitzerland
| | - Xin Xu
- Shanghai Key Laboratory of Molecular Catalysis and Innovation Materials, Collaborative Innovation Centre of Chemistry for Energy Materials, MOE Laboratory for Computational Physical Science, Department of Chemistry, Fudan University, Shanghai 200433, China.
| | - Weitao Yang
- Department of Chemistry and Physics, Duke University, Durham, NC 27516, USA.
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Pal R, Patra SG, Chattaraj PK. Quantitative Structure-Toxicity Relationship in Bioactive Molecules from a Conceptual DFT Perspective. Pharmaceuticals (Basel) 2022; 15:1383. [PMID: 36355555 PMCID: PMC9695291 DOI: 10.3390/ph15111383] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Revised: 11/01/2022] [Accepted: 11/07/2022] [Indexed: 10/29/2023] Open
Abstract
The preclinical drug discovery stage often requires a large amount of costly and time-consuming experiments using huge sets of chemical compounds. In the last few decades, this process has undergone significant improvements by the introduction of quantitative structure-activity relationship (QSAR) modelling that uses a certain percentage of experimental data to predict the biological activity/property of compounds with similar structural skeleton and/or containing a particular functional group(s). The use of machine learning tools along with it has made life even easier for pharmaceutical researchers. Here, we discuss the toxicity of certain sets of bioactive compounds towards Pimephales promelas and Tetrahymena pyriformis in terms of the global conceptual density functional theory (CDFT)-based descriptor, electrophilicity index (ω). We have compared the results with those obtained by using the commonly used hydrophobicity parameter, logP (where P is the n-octanol/water partition coefficient), considering the greater ease of computing the ω descriptor. The Human African trypanosomiasis (HAT) curing activity of 32 pyridyl benzamide derivatives is also studied against Tryphanosoma brucei. In this review article, we summarize these multiple linear regression (MLR)-based QSAR studies in terms of electrophilicity (ω, ω2) and hydrophobicity (logP, (logP)2) parameters.
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Affiliation(s)
- Ranita Pal
- Advanced Technology Development Centre, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Shanti Gopal Patra
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
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Pal R, Patra SG, Chattaraj PK. Can a chemical bond be exclusively covalent or ionic? J CHEM SCI 2022. [DOI: 10.1007/s12039-022-02094-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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18
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Pal R, Poddar A, Chattaraj PK. On the Periodicity of the Information Theory and Conceptual DFT-Based Reactivity Descriptors. J Phys Chem A 2022; 126:6801-6813. [PMID: 36154006 DOI: 10.1021/acs.jpca.2c04106] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The periodic trends in conceptual density functional and information theory-based reactivity descriptors are reported for the atoms H to Ba (Z = 1 to 56). Ionization potential, electron affinity, electronegativity, and hardness show periodic behavior following the Aufbau principle and popular electronic structure principles. They are in agreement with those reported in standard chemistry textbooks. The trend in the electrophilicity index, however, shows an interesting behavior, where it contradicts earlier reports. Our calculation reveals that the noble gas elements correspond to minimum ω values in each period which obey the minimum electrophilicity principle as well as reflect their low reactivity. Periodic trends in electroaccepting and electrodonating powers, along with that of net electrophilicity, are as expected. The behavior of information theory-based Shannon and GBP entropies, along with the Shannon entropy of shape function are also explored across the periodic table.
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Affiliation(s)
- Ranita Pal
- Advanced Technology Development Centre, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Arpita Poddar
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
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Abstract
Herein, we report for the first time the presence of a planar hexacoordinate boron (phB) atom in the global minimum energy structure of a neutral cluster system. The potential energy surface (PES) has been explored for CB6Al0/+/- systems using density functional theory (DFT). The global minima of CB6Al (1a) and CB6Al+ (1b) contain a phB center. However, the global minimum of CB6Al- (1c) does not have a phB atom. The CCSD(T)/aug-cc-pVTZ level of theory has been applied to compute the relative energies of the low-lying isomers with respect to the 1a and 1b structures of CB6Al and CB6Al+ systems, respectively. The exploration of the PES of CB60/+/- systems indicates that the global minima do not contain a phB atom. However, the incorporation of an aluminium (Al) atom into the CB6 moiety produces structures containing a phB center in the CB6Al0/+ systems. Hence, the Al metal has an important role in attaining a planar geometry having a hexacoordinate boron center. The dynamical stability of CB6Al (1a) and CB6Al+ (1b) was confirmed from the atom-centered density matrix propagation (ADMP) simulation over 20 ps of time at temperatures of 300 K and 400 K. The natural charge computations showed that the charges on the phB are almost zero in both systems. The 1a structure has σ/π-dual aromaticity as predicted from the nucleus independent chemical shift (NICS) values and the gauge-including magnetically induced ring current (GIMIC).
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Affiliation(s)
- Prasenjit Das
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
| | - Shanti Gopal Patra
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
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Saha R, Das P, Chattaraj PK. Molecular Electrides: An In Silico Perspective. Chemphyschem 2022; 23:e202200329. [PMID: 35894262 DOI: 10.1002/cphc.202200329] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Revised: 07/27/2022] [Indexed: 11/10/2022]
Abstract
Electrides are defined as the ionic compounds where the electron(s) serves as an anion. These electron(s) is (are) not bound to any atoms, bonds, or molecules rather than they are localized into the space, crystal voids, or interlayer between two molecular slabs. There are three major categories of electrides, known as organic electriades, inorganic electrides, and molecular electrides. The computational techniques have proven as a great tool to provide emphasis on the electride materials. In this review, we have focused on the computational methodologies and criteria that help to characterize molecular electrides. A detailed account of the computational methods and basis sets applicable for molecular electrides have been discussed along with their limitation(s) in this field. The main criterion for the identification of the electrides has also been discussed thoroughly with proper examples. The molecular electrides presented here have been justified with all the required criteria that support and proved their electride characteristics. We have also presented a few systems which have similar properties but are not considered as molecular electrides. Moreover, the applicability of the electrides in catalytic processes has also been presented.
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Affiliation(s)
- Ranajit Saha
- Hokkaido University, Sapporo, Japan, Institute for Chemical Reaction Design & Discovery (ICReDD), JAPAN
| | - Prasenjit Das
- Indian Institute of Technology Kharagpur, Chemistry, INDIA
| | - Pratim Kumar Chattaraj
- Indian Institute of Technology, Kharagpur, Chemistry, Indian Institute of Technology Kharagpur 721302, 721302, Kharagpur, INDIA
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21
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Chakraborty B, Jha R, Kar S, Chattaraj PK. Controlling Tunneling Oscillation and Quantum Localization in an Asymmetric Double-Well Potential: A Bohmian Perspective. J Phys Chem A 2022; 126:4834-4847. [PMID: 35834735 DOI: 10.1021/acs.jpca.2c03049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The roles of spatial symmetry and strength of external time-dependent perturbation on the dynamics of a quantum particle, initially localized in one of the wells of an asymmetric double-well potential are studied using the recently developed techniques incorporating quantum theory of motion and time-dependent Fourier grid Hamiltonian methods. The model used here includes a mimic of the related experimental situations which is considered as a perturbation to the static double-well potential. Analysis of localized and delocalized phase space structures and corresponding time-profile of tunneling probability reveal the recipe toward controlling the tunneling oscillations by modulating the parameters of applied perturbation. A study on a stochastic pulsating potential also reveals the root to the quantum localization, even in moderate field strength.
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Affiliation(s)
- Bhrigu Chakraborty
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Ruchi Jha
- Advanced Technology Development Centre, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Susmita Kar
- Department of Chemistry, Scottish Church College, Kolkata 700006, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
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Das P, Khatun M, Anoop A, Chattaraj PK. CSi nGe 4-n2+ ( n = 1-3): prospective systems containing planar tetracoordinate carbon (ptC). Phys Chem Chem Phys 2022; 24:16701-16711. [PMID: 35770562 DOI: 10.1039/d2cp01494g] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Density functional theory (DFT) based calculations have been carried out to explore the potential energy surface (PES) of CSinGe4-n2+/+/0 (n = 1-3) systems. The global minimum structures in the di-cationic states (1a, 1b, and 1c) contain a planar tetracoordinate carbon (ptC). For the CSi2Ge22+ system, the second stable isomer (2b) also contains a ptC with 0.67 kcal mol-1 higher energy than that of the 1b ptC isomer. The global minima of the neutral and mono-cationic states of the designed systems are not planar. The 1a, 1b, and 1c structures follow the 18 valence electron rule. The relative energies of the low-lying isomers of CSiGe32+, CSi2Ge22+, and CSi3Ge2+ systems with respect to the global minima were calculated using the CCSD(T)/aug-cc-pVTZ method. Ab initio molecular dynamics simulations for 50 ps time indicate that all the global minimum structures (1a, 1b, and 1c) are kinetically stable at 300 K and 500 K temperatures. The natural bond orbital (NBO) analysis suggests strong σ-acceptance of the ptC from the four surrounding atoms and simultaneously π-donation occurs from the ptC center. The nucleus independent chemical shift (NICS) showed σ/π-dual aromaticity. We hope that the designed di-cationic systems may be viable in the gas phase.
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Affiliation(s)
- Prasenjit Das
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
| | - Maya Khatun
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
| | - Anakuthil Anoop
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
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Affiliation(s)
| | - Himangshu Mondal
- Department of Chemistry Indian Institute of Technology Kharagpur India
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24
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Mondal H, Patra SG, Chattaraj PK. Small molecule activation and dehydrogenation of an amine–borane system using frustrated Lewis pairs. Struct Chem 2022. [DOI: 10.1007/s11224-022-01934-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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25
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Das P, Chattaraj PK. CSiGaAl 2 -/0 and CGeGaAl 2 -/0 having planar tetracoordinate carbon atoms in their global minimum energy structures. J Comput Chem 2022; 43:894-905. [PMID: 35322887 DOI: 10.1002/jcc.26845] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Revised: 02/20/2022] [Accepted: 03/09/2022] [Indexed: 11/12/2022]
Abstract
Density functional theory (DFT) is used to explore the structure, stability, and bonding in CSiGaAl2 -/0 and CGeGaAl2 -/0 systems having planar tetracoordinate carbon (ptC). The neutral systems have 17 valence electrons and the mono-anionic systems have 18 valence electrons. The ab initio molecular dynamics simulations for 2000 fs time at two different temperatures (300 and 500 K) supported the kinetic stability of the systems. From the natural bond orbital (NBO) analysis it is shown that there is a strong electron donation from the ligand atoms to the ptC atom. We have used Li+ ion for the neutralization of the mono-anionic systems and more interestingly it does not disrupt the planar structure. The most preferable site for binding of Li+ ion is along the AlAl bond in both of the mono-anionic systems. All the systems in this work have both σ and π aromaticity which is predicted from the computations of nucleus independent chemical shift (NICS). Although the anionic species obey the 18 valence electronic rule, the neutral systems break the rule with 17 valence electrons. However, both sets of systems are stable in the planar form. The bonding analysis of the systems includes molecular orbital, adaptive natural density partitioning (AdNDP), quantum theory of atoms in molecules (QTAIM), electron localization function (ELF) basin, and aromaticity analyses. The energy decomposition analysis (EDA) determines the interaction of Li+ ion with CSiGaAl2 - and CGeGaAl2 - in Li@SiGaAl2 and Li@GeGaAl2 , respectively.
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Affiliation(s)
- Prasenjit Das
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, India
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Patra SG, Jha R, Mondal H, Chattaraj PK. Fischer and Schrock carbene complexes in the light of global and local electrophilicity‐based descriptors. J PHYS ORG CHEM 2022. [DOI: 10.1002/poc.4337] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
| | - Ruchi Jha
- Advanced Technology Development Centre Indian Institute of Technology Kharagpur India
| | - Himangshu Mondal
- Department of Chemistry Indian Institute of Technology Kharagpur India
| | - Pratim Kumar Chattaraj
- Department of Chemistry Indian Institute of Technology Kharagpur India
- Department of Chemistry Indian Institute of Technology Mumbai India
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Das P, Chattaraj PK. Stabilisation of Li(0)-Li(0) bond by normal and mesoionic carbenes and electride characteristics of the complexes. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2026512] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Prasenjit Das
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, India
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai, India
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28
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Jana G, Pal R, Chattaraj PK. XNgNSi (X = HCC, F; Ng = Kr, Xe, Rn): A New Class of Metastable Insertion Compounds Containing Ng-C/F and Ng-N Bonds and Possible Isomerization therein. J Phys Chem A 2021; 125:10514-10523. [PMID: 34747606 DOI: 10.1021/acs.jpca.1c07677] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Recently, astronomically important silaisocyanoacetylene (HCCNSi) possessing a large dipole moment has been detected for the first time with the help of crossed molecular beam experiments. Quantum chemical computations at higher levels of theory have also been performed to characterize the transient species. In this study, we have analyzed the equilibrium geometry, stability, reactivity, and energetics as well as the nature of bonding in the noble gas (Ng) inserted HCCNSi compound. We have also considered its F analogue to understand the influence of the most electronegative atom in the compound. Metastable behavior of the XNgNSi compounds (X = HCC, F; Ng = Kr-Rn) is examined by calculating thermochemical parameters like free energy change (ΔG) and zero-point-energy-corrected dissociation energy (D0) at 298 K for all possible two-body (2B) and three-body (3B) (both neutral as well as ionic) dissociation channels using coupled-cluster theory [CCSD(T)] in addition to density functional theory (DFT) as well as second order Møller-Plesset perturbation theory (MP2). The set of predicted compounds is found to be endergonic in nature, having high positive free energy change suggesting the thermochemical stability of the compounds except for the 2B Ng-release paths. Though thermodynamically feasible, they are kinetically protected with very high activation free energy barriers. Interestingly, the release of Ng from the parent moiety XNgNSi produces the XSiN isomer, by 180° flipping of the NSi moiety. This can also be seen in the dynamical simulation carried out with the help of atom-centered density matrix propagation (ADMP) technique at 2000K for 1 ps. The bonding in Ng-C, Ng-F, and Ng-N bonds of the studied compounds is analyzed and described with the aid of natural bond orbital (NBO), topological parameters computed using atoms-in-molecules theory (AIM), energy decomposition analysis (EDA), and adaptive natural density partitioning (AdNDP) methods. The natural charge distribution on the constituent atoms suggests that the compounds can be partitioned into both ways of representations, viz., neutral radical as well as ionic fragments. Lastly, the reactivity of the compounds is scrutinized using certain reactivity descriptors calculated within the domain of conceptual density functional theory (CDFT).
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Affiliation(s)
- Gourhari Jana
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai-400076, India
| | - Ranita Pal
- Advanced Technology Development Centre, Indian Institute of Technology Kharagpur, Kharagpur-721302, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai-400076, India.,Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur-721302, India
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Abstract
Atomic clusters lie somewhere in between isolated atoms and extended solids with distinctly different reactivity patterns. They are known to be useful as catalysts facilitating several reactions of industrial importance. Various machine learning based techniques have been adopted in generating their global minimum energy structures. Bond-stretch isomerism, aromatic stabilization, Rener-Teller effect, improved superhalogen/superalkali properties, and electride characteristics are some of the hallmarks of these clusters. Different all-metal and nonmetal clusters exhibit a variety of aromatic characteristics. Some of these clusters are dynamically stable as exemplified through their fluxional behavior. Several of these cluster cavitands are found to be agents for effective confinement. The confined media cause drastic changes in bonding, reactivity, and other properties, for example, bonding between two noble gas atoms, and remarkable acceleration in the rate of a chemical reaction under confinement. They have potential to be good hydrogen storage materials and also to activate small molecules for various purposes. Many atomic clusters show exceptional opto-electronic, magnetic, and nonlinear optical properties. In this Review article, we intend to highlight all these aspects.
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Affiliation(s)
- Ranita Pal
- Advanced Technology Development Centre, Indian Institute of Technology Kharagpur, Kharagpur, India
| | - Arpita Poddar
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, India
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai, India
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Abstract
The discovery of fullerenes was a huge milestone in the scientific community, and with it came the urge to discover and analyze various small and large atomic and molecular clusters having a cavity. These cavitands of varied shapes and sizes have wide applications in the encapsulation of rare gas atoms to induce bond formation between them, storage of hydrogen and hydrocarbons to be used as alternative sources of fuel, catalyzation of otherwise slow reactions without using a catalyst, activation of small gas molecules, etc. Various cavitands like fullerenes, [ExBox]4+, cucurbit[n]urils, borospherenes, octa acid, etc. have been used for this purpose. Some clusters including cavitands exhibit fluxional behaviour. Systems in a confined environment often manifest interesting variations in their properties and behaviour, compared to their unconfined counterparts, facilitating the aforementioned applications. In this perspective article, we explore the possibility of making use of this extra degree of freedom, viz., the fluxionality, in changing the catalytic activity of the cavitand.
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Affiliation(s)
- Ranita Pal
- Advanced Technology Development Centre, Indian Institute of Technology Kharagpur, 721302, India
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31
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Abstract
An ab initio study has been carried out on the substituted binuclear sandwich complexes of Mg2(η5-C5H5)2. We have checked whether the substitution destroys the electride properties of a complex, as it needs to satisfy several stringent criteria to obtain the status of an electride. The thermochemical results show that the complexes are stable at room temperature and 1 atm pressure. From the analysis of the various electron density descriptors and the natural bond orbital (NBO) for all the complexes, it is confirmed that the Mg-Mg bonds are covalent and the metal-ligand bonds are ionic in nature. The charges on each Mg atom in the studied complexes are +1. Analysis of the electron density descriptors shows the presence of a non-nuclear attractor (NNA) at the middle of the bond formed by the two Mg atoms when attached to the ligands. The electride characteristics are exhibited by all of the designed complexes. We also report the aromaticity behavior and reactivity descriptors of these complexes. The electride characteristics of Mg2(η5-C5H5)2 complex get affected on substitution, as both the NNA population and the nonlinear optical properties (NLO) of the complexes are changed.
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Affiliation(s)
- Prasenjit Das
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.,Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
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32
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Mondal H, Ghara M, Chattaraj PK. A computational investigation of the activation of allene (H2C = C = CHR; R = H, CH3, CN) by a frustrated phosphorous/boron Lewis pair. Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2021.138623] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Abstract
Using the electron density and its associated quantities in a molecular system to quantify chemical reactivity in density functional theory is of considerable recent interest. Local temperature based on the kinetic energy density is an intrinsic property of a molecular system, which can be employed for this purpose. In this work, we explore such a possibility. To this end, we examine the local behavior of local temperature with a few choices of the kinetic energy density, apply it to determine regioselectivity of nucleophilic and electrophilic compounds, and then investigate its performance in appreciating reactions along the intrinsic reaction pathway for exothermic, endothermic, and thermoneutral transformations. Our results confirm that local temperature can be used as an effective descriptor of molecular reactivity.
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Affiliation(s)
- Chunna Guo
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), Hunan Normal University, Changsha, Hunan 410081, China
| | - Xin He
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), Hunan Normal University, Changsha, Hunan 410081, China
| | - Chunying Rong
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education of China), Hunan Normal University, Changsha, Hunan 410081, China
| | - Tian Lu
- Beijing Kein Research Center for Natural Sciences, Beijing 100022, China
| | - Shubin Liu
- Research Computing Center, University of North Carolina, Chapel Hill, North Carolina 27599-3420, United States
- Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599-3290, United States
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Chakraborty D, Chattaraj PK. Conceptual density functional theory based electronic structure principles. Chem Sci 2021; 12:6264-6279. [PMID: 34084424 PMCID: PMC8115084 DOI: 10.1039/d0sc07017c] [Citation(s) in RCA: 59] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Accepted: 03/10/2021] [Indexed: 12/20/2022] Open
Abstract
In this review article, we intend to highlight the basic electronic structure principles and various reactivity descriptors as defined within the premise of conceptual density functional theory (CDFT). Over the past several decades, CDFT has proven its worth in providing valuable insights into various static as well as time-dependent physicochemical problems. Herein, having briefly outlined the basics of CDFT, we describe various situations where CDFT based reactivity theory could be employed in order to gain insights into the underlying mechanism of several chemical processes.
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Affiliation(s)
- Debdutta Chakraborty
- Department of Chemistry, KU Leuven Celestijnenlaan 200F-2404 3001 Leuven Belgium
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Kharagpur 721302 West Bengal India +91 3222 255303 +91 3222 283304
- Department of Chemistry, Indian Institute of Technology Bombay Powai Mumbai 400076 India
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Abstract
The chemical reactivity of a molecule as a whole or of an atom in a molecule varies during a chemical reaction. A variation of global and local reactivity descriptors in the course of a physicochemical process was studied within a quantum fluid density functional theory framework. Effects of a physical confinement and the electronic excitation therein were studied. In this Perspective, we also highlight the direction of a spontaneous chemical reaction in the light of the dynamical variants of the conceptual density functional theory-based electronic structure principles. An exhaustive state-of-the-art dynamical study is warranted in order to understand a chemical reaction from a reactivity perspective augmenting the associated molecular reaction dynamics analysis.
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Affiliation(s)
- Utpal Sarkar
- Department of Physics, Assam University, Silchar 788011, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology, Kharagpur 721302, India.,Department of Chemistry, Indian Institute of Technology, Bombay, Powai, Mumbai 400076, India
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Abstract
Density functional theory (DFT) based computation is performed on the endohedrally encapsulated Li3 cluster inside the B40 and C60 cages namely, Li3@B40 and Li3@C60. For both these systems, the Li-Li bond lengths are shorter than that in the free Li3 cluster. Due to confinement, the Li-Li vibrational frequencies increase in both the systems as compared to that in the free Li3 cluster. Thermodynamically, the formation of these two systems is spontaneous in nature as predicted by the negative values of Gibbs' free energy changes (ΔG). For both the systems one non-nuclear attractor (NNA) is present on the middle of the Li3 cluster which is predicted and confirmed by the electron density analysis. The NNA population and the percentage localization of electron density at the NNA of the Li3@C60 system are higher than that in the Li3@B40 system. At the NNA the values of the Laplacian of electron density are negative and an electron localization function basin is present at the center of the Li3 cluster for localized electrons. Both systems show large values of nonlinear optical properties (NLO). Both the Li3 encapsulated endohedral systems behave as electrides. Electrides have low work function and hence have a great potential in catalytic activity toward the activation of small molecules (such as CO2, N2). Even some electrides have greater catalytic activity than some well-studied metal-loaded catalysts. As the systems under study behave as electrides, they have the power to show catalytic activity and can be used in catalyzing the activation of small molecules.
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Affiliation(s)
- Prasenjit Das
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, India
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai, India
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Nambiar SR, Jana G, Chattaraj PK. Can superalkalis and superhalogens improve the efficacy of redox reactions? Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2020.138131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Das P, Chattaraj PK. Electride Characteristics of Some Binuclear Sandwich Complexes of Alkaline Earth Metals, M 2(η 5-L) 2 (M = Be, Mg; L = C 5H 5-, N 5-, P 5-, As 5-). J Phys Chem A 2020; 124:9801-9810. [PMID: 33190489 DOI: 10.1021/acs.jpca.0c08306] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ab initio calculations have been performed for a series of binuclear sandwich complexes, M2(η5-L)2. It has been observed that the eclipsed and staggered conformations have almost equal amount of energies. The M-M bond lengths are comparable with those in the free M2 molecules (M = Be, Mg). The nuclear-independent chemical shift (NICS) values indicate the aromaticity of these complexes. The stability of Be2(η5-L)2 complexes is higher than that of the Mg2(η5-L)2 complexes. The natural bond orbital (NBO) analysis and electron density descriptors proved the existence of a single covalent M-M bond in an M22+ fragment. It has been observed that each M-M bond contains a non-nuclear attractor (NNA) at the center of the respective bond. The Laplacian of electron density [∇2ρ(r)] is negative at the NNAs. The energy decomposition analysis (EDA) showed that M22+ and 2L- represent the bonding interaction in the complexes. All of the designed binuclear sandwich complexes behave as electrides.
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Affiliation(s)
- Prasenjit Das
- Department of Chemistry and Center for Theoretical Studies, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry and Center for Theoretical Studies, Indian Institute of Technology Kharagpur, Kharagpur 721302, India.,Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
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Ghara M, Chattaraj PK. Noble Gas Binding Ability of an Au(I) Cation Stabilized by a Frustrated Lewis Pair: A DFT Study. Front Chem 2020; 8:616. [PMID: 32850643 PMCID: PMC7396548 DOI: 10.3389/fchem.2020.00616] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Accepted: 06/11/2020] [Indexed: 11/23/2022] Open
Abstract
The noble gas (Ng) binding ability of a monocationic [(FLP)Au]+ species has been investigated by a computational study. Here, the monocationic [(FLP)Au]+ species is formed by coordination of Au(I) cation with the phosphorous (Lewis base) and the boron (Lewis acid) centers of a frustrated Lewis pair (FLP). The bonds involving Au and P, and Au and B atoms in [(FLP)Au]+ are partially covalent in nature as revealed by Wiberg bond index (WBI) values, electron density analysis and energy decomposition analysis (EDA). The zero point energy corrected bond dissociation energy (D0), enthalpy and free energy changes are computed for the dissociation of Au-Ng bonds to assess the Ng binding ability of [(FLP)Au]+ species. The D0 ranges from 6.0 to 13.3 kcal/mol, which increases from Ar to Rn. Moreover, the dissociation of Au-Ng bonds is endothermic as well as endergonic for Ng = Kr-Rn, whereas the same for Ng = Ar is endothermic but exergonic at room temperature. The partial covalent character of the bonds between Au and Ng atoms is demonstrated by their WBI values and electron density analysis. The Ng atoms get slight positive charges of 0.11–0.23 |e|, which indicates some amount of charge transfer takes place from it. EDA demonstrates that electrostatic and orbital interactions have equal contributions to stabilize the Ng-Au bonds in the [(FLP)AuNg]+ complex.
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Affiliation(s)
- Manas Ghara
- Department of Chemistry and Center for Theoretical Studies, Indian Institute of Technology, Kharagpur, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry and Center for Theoretical Studies, Indian Institute of Technology, Kharagpur, India.,Department of Chemistry, Indian Institute of Technology Bombay, Mumbai, India
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Ayers PW, Chattaraj PK, De Proft F, Toro-Labbé A. Tribute to Paul Geerlings. J Phys Chem A 2020. [DOI: 10.1021/acs.jpca.0c04347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Ghara M, Giri S, Chattaraj PK. Cycloaddition Reactions between H2C = CHR (R = H, CN, CH3) and a Cyclic P/B Frustrated Lewis Pair: A DFT Study. J Phys Chem A 2020; 124:4455-4462. [DOI: 10.1021/acs.jpca.0c02799] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Manas Ghara
- Department of Chemistry and Center for Theoretical Studies, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Santanab Giri
- Department of Applied Sciences and Humanities, Haldia Institute of Technology, Haldia 721657, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry and Center for Theoretical Studies, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
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Mandal S, Mandal A, Jana G, Mallik S, Roy S, Ghosh A, Chattaraj PK, Goswami DK. Low Operating Voltage Organic Field-Effect Transistors with Gelatin as a Moisture-Induced Ionic Dielectric Layer: The Issues of High Carrier Mobility. ACS Appl Mater Interfaces 2020; 12:19727-19736. [PMID: 32233358 DOI: 10.1021/acsami.0c01499] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
We have developed low-voltage (<2 V) flexible organic field-effect transistors (OFETs) with high carrier mobility using gelatin as a moisture-induced ionic gate dielectric system. Ionic concentration in the gelatin layer depends on the relative humidity condition during the measurement. The capacitance of the dielectric layer used for the calculation of field-effect carrier mobility for the OFETs crucially depends on the frequency at which the capacitance was measured. The results of frequency-dependent gate capacitance together with the anomalous bias-stress effect have been used to determine the exact frequency at which the carrier mobility should be calculated. The observed carrier mobility of the devices is 0.33 cm2/Vs with the capacitance measured at frequency 20 mHz. It can be overestimated to 14 cm2/Vs with the capacitance measured at 100 kHz. The devices can be used as highly sensitive humidity sensors. About three orders of magnitude variation in device current have been observed on the changes in relative humidity (RH) levels from 10 to 80%. The devices show a fast response with a response and recovery times of ∼100 and ∼110 ms, respectively. The devices are flexible up to a 5 mm bending radius.
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Affiliation(s)
- Suman Mandal
- Organic Electronics Laboratory, Department of Physics, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Ajoy Mandal
- Organic Electronics Laboratory, Department of Physics, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Gourhari Jana
- Department of Chemistry and Center for Theoretical Studies, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Samik Mallik
- School of Nanoscience and Technology, Indian Institute of Technology Kharagpur, Kharapur 721302, India
| | - Satyajit Roy
- Organic Electronics Laboratory, Department of Physics, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Arnab Ghosh
- Organic Electronics Laboratory, Department of Physics, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry and Center for Theoretical Studies, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Dipak K Goswami
- Organic Electronics Laboratory, Department of Physics, Indian Institute of Technology Kharagpur, Kharagpur 721302, India
- School of Nanoscience and Technology, Indian Institute of Technology Kharagpur, Kharapur 721302, India
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Sharma V, De D, Saha R, Chattaraj PK, Bharadwaj PK. Flexibility Induced Encapsulation of Ultrafine Palladium Nanoparticles into Organic Cages for Tsuji-Trost Allylation. ACS Appl Mater Interfaces 2020; 12:8539-8546. [PMID: 31977185 DOI: 10.1021/acsami.9b19480] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
A series of three positional isomers of organic cages namely o-OC, m-OC, and p-OC, have been self-assembled using dynamic covalent chemistry. Their room temperature controlled fabrication with palladium gives ultrafine diameter (1-2 nm) of palladium nanoparticles (Pd NPs). We observed that the shape-flexibility of cages have great impact on the formation of Pd NPs. Theoretical calculations reveals that theoretically obtainable size of Pd NPs for each cage which was complementary to the experimental results. Theoretical studies indicate that the driving forces for the specific orientational preference may be ascribed to subtle variations on the level of π-π interactions, which ultimately governs the growth of Pd NPs therein. It is the first example of shape-flexible synthesis of organic cages where flexibility governs the nanoparticle growth. Pd NPs have shown excellent catalysis of Tsuji-Trost allylation at room temperature and pressure in water.
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Affiliation(s)
- Vivekanand Sharma
- Department of Chemistry , Indian Institute of Technology Kanpur , Kanpur 208016 , India
| | - Dinesh De
- Department of Chemistry , Indian Institute of Technology Kanpur , Kanpur 208016 , India
| | - Ranajit Saha
- Department of Chemistry and Center for Theoretical Studies , Indian Institute of Technology Kharagpur , Kharagpur - 721302 , India
| | - Pratim Kumar Chattaraj
- Department of Chemistry and Center for Theoretical Studies , Indian Institute of Technology Kharagpur , Kharagpur - 721302 , India
- Department of Chemistry , Indian Institute of Technology Bombay , Mumbai , 400076 , India
| | - Parimal K Bharadwaj
- Department of Chemistry , Indian Institute of Technology Kanpur , Kanpur 208016 , India
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Geerlings P, Chamorro E, Chattaraj PK, De Proft F, Gázquez JL, Liu S, Morell C, Toro-Labbé A, Vela A, Ayers P. Conceptual density functional theory: status, prospects, issues. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-2546-7] [Citation(s) in RCA: 77] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Gupta M, Chatterjee N, De D, Saha R, Chattaraj PK, Oliver CL, Bharadwaj PK. Metal-Organic Frameworks of Cu(II) Constructed from Functionalized Ligands for High Capacity H 2 and CO 2 Gas Adsorption and Catalytic Studies. Inorg Chem 2020; 59:1810-1822. [PMID: 31965795 DOI: 10.1021/acs.inorgchem.9b03012] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Two Cu(II)-based metal-organic frameworks (MOFs) having paddle-wheel secondary building units (SBUs), namely, 1Me and 1ipr, were synthesized solvothermally using two new bent di-isophthalate ligands incorporating different substituents. The MOFs showed high porosity (BET surface area, 2191 m2/g for 1Me and 1402 m2/g for 1ipr). For 1Me, very high CO2 adsorption (98.5 wt % at 195 K, 42.9 wt % at 273 K, 23.3 wt % at 298 K) at 1 bar was found, while for 1ipr, it was significantly less (14.3 wt % at 298 K and 1 bar, 54.4 wt % at 298 K at 50 bar). 1Me exhibited H2 uptake of 3.2 wt % at 77 K and 1 bar of pressure, which compares well with other benchmark MOFs. For 1ipr, the H2 uptake was found to be 2.54 wt % under similar experimental conditions. The significant adsorption of H2 and CO2 for 1Me could be due to the presence of micropores as well as unsaturated metal sites in these MOFs besides the presence of substituents that interact with the gas molecules. The experimental adsorption behavior of the MOFs could be justified by theoretical calculations. Additionally, catalytic conversions of CO2 and CS2 into useful chemicals like cyclic carbonates, cyclic trithiocarbonates, and cyclic dithiocarbonates could be achieved.
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Affiliation(s)
- Mayank Gupta
- Department of Chemistry , Indian Institute of Technology Kanpur , Kanpur 208016 , India
| | - Nabanita Chatterjee
- Centre for Supramolecular Chemistry Research (CSCR), Department of Chemistry , University of Cape Town , Cape Town , South Africa
| | - Dinesh De
- Department of Basic Science, Vishwavidyalaya Engineering College, Lakhanpur , Sarguja University , Lakhanpur , Chhattisgarh - 497116 , India
| | - Ranajit Saha
- Department of Chemistry and Center for Theoretical Studies , Indian Institute of Technology Kharagpur , Kharagpur 721302 , India
| | - Pratim Kumar Chattaraj
- Department of Chemistry and Center for Theoretical Studies , Indian Institute of Technology Kharagpur , Kharagpur 721302 , India.,Department of Chemistry , Indian Institute of Technology Bombay , Mumbai 400076 , India
| | - Clive L Oliver
- Centre for Supramolecular Chemistry Research (CSCR), Department of Chemistry , University of Cape Town , Cape Town , South Africa
| | - Parimal K Bharadwaj
- Department of Chemistry , Indian Institute of Technology Kanpur , Kanpur 208016 , India.,Department of Chemistry , Indian Institute of Technology Bombay , Mumbai 400076 , India
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Affiliation(s)
- Ranajit Saha
- Department of Chemistry and Center for Theoretical Studies Indian Institute of Technology Kharagpur 721302 Kharagpur India
| | - Prasenjit Das
- Department of Chemistry and Center for Theoretical Studies Indian Institute of Technology Kharagpur 721302 Kharagpur India
| | - Pratim Kumar Chattaraj
- Department of Chemistry and Center for Theoretical Studies Indian Institute of Technology Kharagpur 721302 Kharagpur India
- Department of Chemistry Indian Institute of Technology Bombay 400076 Mumbai India
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Saha R, Jana G, Pan S, Merino G, Chattaraj PK. How Far Can One Push the Noble Gases Towards Bonding?: A Personal Account. Molecules 2019; 24:molecules24162933. [PMID: 31412650 PMCID: PMC6719121 DOI: 10.3390/molecules24162933] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2019] [Revised: 07/29/2019] [Accepted: 07/30/2019] [Indexed: 01/29/2023] Open
Abstract
Noble gases (Ngs) are the least reactive elements in the periodic table towards chemical bond formation when compared with other elements because of their completely filled valence electronic configuration. Very often, extreme conditions like low temperatures, high pressures and very reactive reagents are required for them to form meaningful chemical bonds with other elements. In this personal account, we summarize our works to date on Ng complexes where we attempted to theoretically predict viable Ng complexes having strong bonding to synthesize them under close to ambient conditions. Our works cover three different types of Ng complexes, viz., non-insertion of NgXY type, insertion of XNgY type and Ng encapsulated cage complexes where X and Y can represent any atom or group of atoms. While the first category of Ng complexes can be thermochemically stable at a certain temperature depending on the strength of the Ng-X bond, the latter two categories are kinetically stable, and therefore, their viability and the corresponding conditions depend on the size of the activation barrier associated with the release of Ng atom(s). Our major focus was devoted to understand the bonding situation in these complexes by employing the available state-of-the-art theoretic tools like natural bond orbital, electron density, and energy decomposition analyses in combination with the natural orbital for chemical valence theory. Intriguingly, these three types of complexes represent three different types of bonding scenarios. In NgXY, the strength of the donor-acceptor Ng→XY interaction depends on the polarizing power of binding the X center to draw the rather rigid electron density of Ng towards itself, and sometimes involvement of such orbitals becomes large enough, particularly for heavier Ng elements, to consider them as covalent bonds. On the other hand, in most of the XNgY cases, Ng forms an electron-shared covalent bond with X while interacting electrostatically with Y representing itself as [XNg]+Y-. Nevertheless, in some of the rare cases like NCNgNSi, both the C-Ng and Ng-N bonds can be represented as electron-shared covalent bonds. On the other hand, a cage host is an excellent moiety to examine the limits that can be pushed to attain bonding between two Ng atoms (even for He) at high pressure. The confinement effect by a small cage-like B12N12 can even induce some covalent interaction within two He atoms in the He2@B12N12 complex.
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Affiliation(s)
- Ranajit Saha
- Department of Chemistry and Centre for Theoretical Studies Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Gourhari Jana
- Department of Chemistry and Centre for Theoretical Studies Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Sudip Pan
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing 211816, China.
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, Mérida 97310, Yuc., Mexico.
| | - Pratim Kumar Chattaraj
- Department of Chemistry and Centre for Theoretical Studies Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India.
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Abstract
Deep generative models have been praised for their ability to learn smooth latent representation of images, text, and audio, which can then be used to generate new, plausible data. However, current generative models are unable to work with molecular graphs due to their unique characteristics—their underlying structure is not Euclidean or grid-like, they remain isomorphic under permutation of the nodes labels, and they come with a different number of nodes and edges. In this paper, we propose NeVAE, a novel variational autoencoder for molecular graphs, whose encoder and decoder are specially designed to account for the above properties by means of several technical innovations. In addition, by using masking, the decoder is able to guarantee a set of valid properties in the generated molecules. Experiments reveal that our model can discover plausible, diverse and novel molecules more effectively than several state of the art methods. Moreover, by utilizing Bayesian optimization over the continuous latent representation of molecules our model finds, we can also find molecules that maximize certain desirable properties more effectively than alternatives.
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