Anticancer effects and lysosomal acidification in A549 cells by Astaxanthin from Haematococcus lacustris

Astaxanthin (AXN) is known to have health benefits by epidemiological studies. Therefore, it is of interest to assess the effect of AXN (derived from indigenous unicellular green alga Haematococcus lacustris) to modulate cell cycle arrest, lysosomal acidification and eventually apoptosis using in vitro in A549 lung cancer cells. Natural extracts of astaxanthin were obtained by standardized methods as reported earlier and characterized by standard HPLC and MS. Treatment of A549 cells with AXN (purified fraction) showed significant reduction in cell viability (about 50%) as compared to crude extract at 50µM concentration. Thus, we show the anticancer effects and lysosomal acidification in A549 cells by Astaxanthin from Haematococcus lacustris for further consideration. Together, our results demonstrated the anticancer potential of AXN from Haematococcus lacustris, which is found to be mediated via its ability to induce cell cycle arrest, lysosomal acidification and apoptotic induction.

Astrocytes resolve ER stress through mitochondrial fusion facilitated by biotin availability

Structures of cellular organelles are intertwined with their functions that undergo alterations once the organelles are stressed. Since organelle functions are dependent on each other, an organelle-specific stress possibly influences the structure and function of its associated organelles. In this perspective, our study demonstrated that endoplasmic reticulum (ER)-specific stress induced by tunicamycin in primary astroglial culture is associated with altered mitochondrial dynamics and matched with the changes as observed in the aging rat brain. However, the exogenous addition of biotin, a highly lipogenic and mitochondrial vitamin, ameliorates ER stress even though its direct targets are not known within ER. Alternatively, the increased biotinylation of mitochondrial carboxylases preserves its basal respiratory capacity by upregulating mitofusin 2 (Mfn2) and, possibly, its associated role on mitochondrial fusion. Furthermore, the Mfn2 increase by biotin augments physical interaction between ER and functional mitochondria to exchange biomolecules as a part of ER stress resolution. This suggests an increased demand for micronutrient biotin under ER stress resolves the same by undergoing appropriate structural and metabolic contacts between ER and mitochondria. These findings provide a paradigm to resolve stress in one organelle by sustaining the metabolic commitments of another interdependent organelle. The findings also highlight a novel role of biotin in inducing Mfn2 expression and localization under ER stress in addition to its known role as a co-enzyme.

Distinct utilization of biotin in and between adipose and brain during aging is associated with a lipogenic shift in Wistar rat brain

Tissue-specific metabolism determines their functions that collectively sense and respond to numerous stress cues to achieve systemic homeostasis. Chronic stress skews such metabolic profiles and leads to failure of organs as evidenced by a bias towards lipid synthesis and storage in the aging brain, muscle, and liver under Alzheimer's disease, sarcopenia, and non-alcoholic fatty liver disease, respectively. In contrast, the tissue destined for lipid synthesis and storage, such as adipose, limits its threshold and develops diabetes mellitus. However, the underlying factors that contribute to this lipogenic shift between organs are unknown. From this perspective, differential biotin utilization between lipid-rich tissues such as adipose and brain during aging was hypothesized owing to the established role of biotin in lipogenesis. The same was tested using young and aged Wistar rats. We found that adipose-specific biotin content was much higher than the brain irrespective of aging status, as well as its associated cues. However, within tissues, the adipose fails to maintain its biotinylation levels during aging whereas the brain seizes more biotin and exhibits lipid accumulation. Furthermore, mimicking the age-related stress cues in vitro such as high glucose and endoplasmic reticulum stress deprive the astroglial biotin content, but not that of adipocytes. Lipid accumulation in the aging brain was also correlated with increased S-adenosylmethionine levels and biotin utilization by astrocytes. In summary, differential biotin utilization between adipose and brain under aging and their respective cell types like adipocytes and astrocytes under age-associated stress cues connects well with the lipogenic shift in rat brain.

Comparison of separation performance of independent component analysis algorithms for fMRI data

Independent component analysis, a data-driven analysis method, has found significant applications in task-based as well as resting state fMRI studies. There are numbers of independent component analysis algorithms available, but only a few of them have been used frequently so far for fMRI images. With a view that algorithms that are overlooked may outperform the most opted, a comparative study is taken up in this paper to analyze their abilities for the purpose of synthesis of fMRI images. In this paper, ten independent component algorithms: Fast ICA, INFOMAX, SIMBEC, JADE, ERICA, EVD, RADICAL, ICA-EBM, ERBM, and COMBI are compared. Their separation abilities are adjudged on both, synthetic and real fMRI images. Performance to decompose synthetic fMRI images is being monitored on the basis of spatial correlation coefficients, time elapsed to extract independent components and the visual appearance of independent components. Ranking of their performances on task-based real fMRI images are based on the closeness of time courses of identified independent components with model time course and the closeness of spatial maps of components with spatial templates while their competencies for resting state fMRI data are analyzed by examining how distinctly they decompose the data into the most consistent resting state networks. Sum of mutual information between all the permutations of decomposed components of resting state fMRI data are also calculated.

Bactericidal activity of PA-824 against Mycobacterium tuberculosis under anaerobic conditions and computational analysis of its novel analogues against mutant Ddn receptor

Background

The resurgence of multi-drug resistant tuberculosis (MDR-TB) and HIV associated tuberculosis (TB) are of serious global concern. To contain this situation, new anti-tuberculosis drugs and reduced treatment regimens are imperative. Recently, a nitroimidazole, PA-824, has been shown to be active against both replicating and non-replicating bacteria. It is activated by the enzyme Deazaflavin-dependent nitroreductase (Ddn) present in Mycobacterium tuberculosis which catalyzes the reduction of PA-824, resulting in the release of lethal reactive nitrogen species (RNS) within the bacteria. In this context, PA-824 was analyzed for its activity against latent tuberculosis under anaerobic conditions and compared with rifampicin (RIF) and pyrazinamide (PZA). Recent mutagenesis studies have identified A76E mutation which affects the above mentioned catalysis and leads to PA-824 resistance. Hence, novel analogues which could cope up with their binding to mutant Ddn receptor were also identified through this study.

Results

PA-824 at an optimum concentration of 12.5 μg/ml showed enhanced bactericidal activity, resulting in 0 CFU/ml growth when compared to RIF and PZA at normal pH and anaerobic condition. Further docking studies revealed that a combinatorial structure of PA-824 conjugated with moxifloxacin (ligand 8) has the highest binding affinity with the wild type and mutant Ddn receptor.

Conclusions

PA-824 has been demonstrated to have better activity under anaerobic condition at 12.5 μg/ml, indicating an optimized dose that is required for overcoming the detoxifying mechanisms of M. tuberculosis and inducing its death. Further, the development of resistance through A76E mutation could be overcome through the in silico evolved ligand 8.

Determining similarity in histological images using graph-theoretic description and matching methods for content-based image retrieval in medical diagnostics

Background

Computer-based analysis of digitalized histological images has been gaining increasing attention, due to their extensive use in research and routine practice. The article aims to contribute towards the description and retrieval of histological images by employing a structural method using graphs. Due to their expressive ability, graphs are considered as a powerful and versatile representation formalism and have obtained a growing consideration especially by the image processing and computer vision community.

Methods

The article describes a novel method for determining similarity between histological images through graph-theoretic description and matching, for the purpose of content-based retrieval. A higher order (region-based) graph-based representation of breast biopsy images has been attained and a tree-search based inexact graph matching technique has been employed that facilitates the automatic retrieval of images structurally similar to a given image from large databases.

Results

The results obtained and evaluation performed demonstrate the effectiveness and superiority of graph-based image retrieval over a common histogram-based technique. The employed graph matching complexity has been reduced compared to the state-of-the-art optimal inexact matching methods by applying a pre-requisite criterion for matching of nodes and a sophisticated design of the estimation function, especially the prognosis function.

Conclusion

The proposed method is suitable for the retrieval of similar histological images, as suggested by the experimental and evaluation results obtained in the study. It is intended for the use in Content Based Image Retrieval (CBIR)-requiring applications in the areas of medical diagnostics and research, and can also be generalized for retrieval of different types of complex images.

Virtual Slides

The virtual slide(s) for this article can be found here: http://www.diagnosticpathology.diagnomx.eu/vs/1224798882787923.

Docking studies on novel analogues of 8 methoxy fluoroquinolones against GyrA mutants of Mycobacterium tuberculosis

BACKGROUND

Fluoroquinolone resistance is a serious threat in the battle against the treatment of multi drug resistant tuberculosis (MDR-TB) and extensively drug resistant tuberculosis (XDR-TB). Fluoroquinolone resistant isolates from India had shown to have evolved several mutants in the quinolone resistance determining region (QRDR) of DNA gyrase A subunit (GyrA), the target of fluoroquinolone. In view of high prevalence of mutations in the 'hot spot' region, a study on combinatorial drug design was carried out to identify better analogues for the treatment of MDR-TB. The gyrA subunit 'hot spot' region of codons 90, 94 and 95 were modeled into their corresponding protein folds and used as receptors for the docking studies. Further, invitro tests were carried using the parent compounds, namely gatifloxacin and moxifloxacin and correlated with the obtained docking scores.

RESULTS

Molecular docking and in vitro studies correlated well in demonstrating the enhanced activity of moxifloxacin, when compared to gatifloxacin, on ofloxacin sensitive and resistant strains comprising of clinical isolates of MDR-TB. The evolved lead structures targeting against mutant QRDR receptors were guanosine and cholesteryl esters of gatifloxacin and moxifloxacin. They showed consistently high binding affinity values of -10.3 and -10.1 kcal/mol respectively with the target receptors. Of these, the guanosine ester showed highest binding affinity score and its log P value lied within the Lipinski's range indicating that it could have better absorptivity when it is orally administered thereby having an enhanced activity against MTB.

CONCLUSIONS

The docking results showed that the addition of the cholesteryl and guanosine esters to the 'DNA gyrase binding' region of gatifloxacin and moxifloxacin enhanced the binding affinity of these parent molecules with the mutant DNA gyrase receptors. Viewing the positive correlation for the docking and in vitro results with the parent compounds, these lead structures could be further evaluated for their in vitro and in vivo activity against MDR-TB.

Medical feature based evaluation of structuring elements for morphological enhancement of ultrasonic images

This paper investigates the use of morphology-based nonlinear filters, and performs deterministic and statistical analysis of the linear combinations of the filters for the image quality enhancement of B-mode ultrasound images. The fact that the structuring element shape greatly influences the output of the filter, is one of the most important features of mathematical morphology. The present reported work comparatively evaluates the structuring elements for morphological liver image enhancement and verifies the hypothesis that the speckles visible in US images are short, slightly 'banana-shaped' white lines. Initially, five different liver images were morphologically filtered using 10 different structuring elements and then the filtered images were assessed quantitatively. Image quality parameters such as peak signal-to-noise ratio, mean square error and correlation coefficient have been used to evaluate the performance of the morphological filters with different structuring elements. To endorse the observation of the quantitative analysis, the filtered images were then evaluated qualitatively, based on the image features looked into by the medical fraternity. The evaluation parameters have been taken on the basis of the suggestions made by a group of radiologists. The results of the processed images were then evaluated by a different group of radiologists. A multi-point rank order method has been used to identify small differences or trends in observation. The subjective analysis by radiologists indicates that morphological filter using line shaped structuring element with length 2 performs better than the other structuring elements. These observations were found to be in line with the observations of quantitative analysis.

Computer aided analysis of phonocardiogram

In the present paper analysis of phonocardiogram (PCG) records are presented. The analysis has been carried out in both time and frequency domains with the aim of detecting certain correlations between the time and frequency domain representations of PCG. The analysis is limited to first and second heart sounds (S1 and S2) only. In the time domain analysis the moving window averaging technique is used to determine the occurrence of S1 and S2, which helps in determination of cardiac interval and absolute and relative time duration of individual S1 and S2, as well as absolute and relative duration between them. In the frequency domain, fast Fourier transform (FFT) of the complete PCG record, and short time Fourier transform (STFT) and wavelet transform of individual heart sounds have been carried out. The frequency domain analysis gives an idea about the dominant frequency components in individual records and frequency spectrum of individual heart sounds. A comparative observation on both the analyses gives some correlation between time domain and frequency domain representations of PCG.

Speckle reduction in ultrasound medical images using adaptive filter based on second order statistics

This article discusses an adaptive filtering technique for reducing speckle using second order statistics of the speckle pattern in ultrasound medical images. Several region-based adaptive filter techniques have been developed for speckle noise suppression, but there are no specific criteria for selecting the region growing size in the post processing of the filter. The size appropriate for one local region may not be appropriate for other regions. Selection of the correct region size involves a trade-off between speckle reduction and edge preservation. Generally, a large region size is used to smooth speckle and a small size to preserve the edges into an image. In this paper, a smoothing procedure combines the first order statistics of speckle for the homogeneity test and second order statistics for selection of filters and desired region growth. Grey level co-occurrence matrix (GLCM) is calculated for every region during the region contraction and region growing for second order statistics. Further, these GLCM features determine the appropriate filter for the region smoothing. The performance of this approach is compared with the aggressive region-growing filter (ARGF) using edge preservation and speckle reduction tests. The processed image results show that the proposed method effectively reduces speckle noise and preserves edge details.

Improved segmentation of ultrasound images for fetal biometry, using morphological operators

Currently, radiologists indicate the femur endpoints with an interactive marker device; however, these measurements are subjective and have proved to be inconsistent. The main objective of this work is to obtain a time-efficient morphology-based algorithm to recognize femur contour in fetal ultrasound images, refine its shape for automatic length measurement, and thus, attaining accuracy and reproducibility of measurement. To achieve these objectives a cross-sectional study with subjects belonging to different family units of different communities was carried out. The images obtained from the subjects were initially processed using morphological operators to remove the background from the image. Thereafter, to refine the shape of the femur, the images were metamorphosed, using the morphological operators, till a single pixel - wide skeleton of the femur was available in the most time-effective manner. The skeleton-end-points are assumed to be the femur-end-points, and the femur length is calculated as the distance between the end-points to estimate gestational age. The mean execution time of the proposed algorithm was around 4 seconds. Measurements, performed using the automation algorithm, were found to be closely correlated to those obtained manually. The proposed algorithm was found to be time-efficient, and the results obtained were comparable to those derived through the existing methods for estimation of gestational age.

Comparison of methods to determine glucose kinetics and measurement of recycling and lactose formation in lactating cows

Several investigators have suggested that the conventional multicompartmental exponential analysis of in vivo glucose metabolism is arbitrary and possibly not the most accurate description of glucose kinetics, especially in the large animal. In support of that hypothesis, we found that in a systematic comparison of 3 methods, blood-specific radioactivity data in single-injection studies of glucose metabolism in lactating cows was better described graphically, or by a hybrid polynomial-biexponential curve fit, than by an exclusively exponential curve fit. We hypothesized that this finding was attributable to partial failure of linearity and steady-state assumptions that underlie the exponential model. Second, using both an irreversible tracer (3H-labeled glucose) and reversible tracer (14C-labeled glucose), we found that glucose carbon recycling had no effect during the first 2 hours, but became significant in lactating cows 7 hours after injection. Finally, we determined that approximately 52 to 55% of the glucose replacement rate was being used to generate lactose.

Fetal catecholamine responses to maternal hypoglycemia

The present studies were designed to determine the fetal catecholamine and metabolic responses to insulin-induced maternal hypoglycemia. Maternal hypoglycemia was induced by a primed constant infusion of insulin and glucose administered to pregnant ewes to maintain maternal glucose at 20-25 mg/dl. Maternal and fetal samples for measurement of catecholamine, glucose, and free fatty acid levels and arterial blood gas analysis were collected before insulin infusion and at intervals thereafter for 6 h. Maternal and fetal plasma catecholamine levels increased significantly in response to hypoglycemia (analysis of variance, P less than 0.01). Fetal insulin and glucagon levels did not change despite a 50% reduction in fetal whole blood glucose concentration. Fetal free fatty acid levels increased significantly during hypoglycemia (P less than 0.05). There were no significant changes in maternal or fetal heart rate, blood pressure, or arterial blood gases during hypoglycemia. These results suggest that the fetus is capable of responding to hypoglycemia with an increase in catecholamine and free fatty acid levels. These results are consistent with the interpretation that the fetus is able to mobilize alternative energy substrates in response to maternal insulin-induced hypoglycemia.

Prevalence of high risk children under five--a study in rural Delhi

678 under five children were surveyed in village Shahbad Mohammadpur, Delhi. Two weeks morbidity was also recorded. 47.9 per cent children had one or more risk factors studied. Significantly more female children (54.1 per cent) were at risk than male children (43.3 per cent). 433 risk factors were observed in 325 at risk children. Majority of them had one or two risk factors. Birth interval less than two years and malnutrition were most frequent risk factors. At risk children suffered significantly more than not at risk (21.2 per cent vs 14.4 per cent). The results confirmed the validity of the risk factors considered for the study.

Partitioning of amino acids in lactating cows: oxidation to carbon dioxide

The rate and extent of oxidation of 20 different amino acids has been evaluated as part of a study on partitioning of amino acids in normal lactating cows. Only four amino acids--glutamate, aspartate, alanine and glutamine--were extensively oxidized, and when expressed as a percentage of the injected dose oxidized during 3 h after intravenous injection, the value for these four amino acids was not significantly different from those obtained with the volatile fatty acids. The oxidation of all other amino acids was significantly slower, effectively prolonging their availability for protein synthesis. The pattern of oxidation among the amino acids supports the hypothesis that catabolized protein can provide a protracted source of anaplerotic precursors that augment the metabolic role of the tricarboxylic acid cycle and would have survival advantage in both acute and chronic exigencies. Glutamate and aspartate provide the earliest and largest influx to the tricarboxylic acid cycle, with alanine and, especially, glutamine appearing to serve as reservoirs of amino-nitrogen. Several dispensable amino acids are metabolized as slowly as the indispensable ones, indicating that metabolic conservation is not restricted to the latter group.

Bidirectional placental transfer of glucose and its turnover in fetal and maternal sheep

Glucose biokinetics were assessed simultaneously in the pregnant ewe and its fetus by a primed constant infusion of 2-3H glucose and U-14C glucose. Late in gestation fetal glucose turnover was 27.3 +/- 3.7 mg/min; expressed in terms of fetal weight this is 6 to 10 mg/kg/min. In the fed state the results indicated that all of the fetal glucose turnover was derived from the mother via placental transfer and there was no evidence that the fetus was capable of glucose production. Maternal glucose turnover was 145.6 +/- 9.3 mg/min (2.8 mg/kg/min). There was a significant amount of glucose (16.3 +/- 2.3 mg/min) transferred from the fetus to the mother. This feto-maternal transfer of glucose accounted for 11% of the maternal glucose turnover and approximately 50% of the total glucose coming to the fetus from the mother. This study provides the first in vivo simultaneous quantification of the bidirectional glucose transfer across the placenta.