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Boutin S, Scherrer M, Späth I, Kocer K, Heeg K, Nurjadi D. Cross-contamination of carbapenem-resistant Gram-negative bacteria between patients and the hospital environment in the first year of a newly built surgical ward. J Hosp Infect 2024; 144:118-127. [PMID: 38081456 DOI: 10.1016/j.jhin.2023.11.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 11/06/2023] [Accepted: 11/20/2023] [Indexed: 01/19/2024]
Abstract
BACKGROUND Transmission and outbreaks of carbapenem-resistant Gram-negative bacteria (CRGN) in hospitals are often associated with contamination of the wastewater environment. We performed a prospective observational study to investigate the colonization of the hospital wastewater environment during the first year of occupancy of the surgical intermediate and intensive care units of a newly constructed building at the University Hospital of Heidelberg, Germany. METHODS We performed monthly screening of the wastewater system (toilets and sinks) for 12 months, starting 1 month before opening (1st October 2020 to 30th October 2021). Admission and weekly rectal screening of patients for CRGN were also performed in parallel. Bacterial isolates were characterized by whole-genome sequencing. RESULTS Twenty-seven of 1978 (1.4%) admitted patients were colonized/infected with CRGN. A total of 29 CRGN isolates from 24 patients and 52 isolates were available for sequencing. Within the first month of occupancy, we identified seven patients colonized/infected with CRGN, while none were found in the environmental reservoirs. The first detection of CRGN isolates in the sewage system started five months after the first occupancy. Two previously non-colonized patients were colonized/infected with Pseudomonas aeruginosa strains colonizing the sewage system. The significant identity of plasmids carrying the carbapenemase gene suggests that long-term colonization of the sewage system facilitates the emergence of new carbapenem-resistant clones. CONCLUSION Cross-contamination between patients and the hospital environment is bidirectional. Our study demonstrated that contamination of the hospital wastewater environment may lead to persistent colonization and may serve as a reservoir for nosocomial acquisition of CRGN.
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Affiliation(s)
- S Boutin
- University of Lübeck and University Medical Center Schleswig-Holstein, Department of Infectious Diseases and Microbiology, Lübeck, Germany; Heidelberg University Hospital, Department of Medical Microbiology and Hygiene, Heidelberg, Germany
| | - M Scherrer
- Heidelberg University Hospital, Department of Medical Microbiology and Hygiene, Heidelberg, Germany
| | - I Späth
- Heidelberg University Hospital, Department of Medical Microbiology and Hygiene, Heidelberg, Germany
| | - K Kocer
- Heidelberg University Hospital, Department of Medical Microbiology and Hygiene, Heidelberg, Germany
| | - K Heeg
- Heidelberg University Hospital, Department of Medical Microbiology and Hygiene, Heidelberg, Germany
| | - D Nurjadi
- University of Lübeck and University Medical Center Schleswig-Holstein, Department of Infectious Diseases and Microbiology, Lübeck, Germany; Heidelberg University Hospital, Department of Medical Microbiology and Hygiene, Heidelberg, Germany; German Center for Infection Research (DZIF), Partner Site Hamburg-Lübeck-Borstel-Riems, Germany.
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Bechberger M, Eigenbrod T, Boutin S, Heeg K, Bode KA. IL-1β knockout increases the intestinal abundancy of Akkermansia muciniphila. Benef Microbes 2023; 14:361-370. [PMID: 38661383 DOI: 10.1163/18762891-20220042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 06/07/2023] [Indexed: 04/26/2024]
Abstract
The proinflammatory cytokine interleukin-1β (IL-1β) is known to be upregulated in patients suffering from metabolic syndrome. IL-1β contributes to insulin resistance in obesity and type 2 diabetes, yet its influence on the intestinal microbiome is incompletely understood. The data presented here demonstrate that mice genetically deficient in IL-1β show a specific alteration of intestinal colonisation of a small group of bacteria. Especially Akkermansia muciniphila, a bacterium reported to be inversely associated with obesity, diabetes, cardiometabolic diseases and low-grade inflammation, showed increased colonisation in IL-1β knockout mice. In comparative microarray analysis from mucus scrapings of the colon mucosa of IL-1β knockout and wildtype mice, angiogenin 4 mRNA was strongly reduced in IL-1β knockout animals. Since the presence of angiogenin 4 in the culture medium showed a significant growth inhibition on A. muciniphila which was not detectable for other bacteria tested, IL-1β induced expression of angiogenin 4 is a strong candidate to be responsible for the IL-1β induced suppression of A. muciniphila colonisation. Thus, the data presented here indicate that IL-1β might be the lacking link between inflammation and suppression of A. muciniphila abundance as observed in a variety of chronic inflammatory disorders.
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Affiliation(s)
- M Bechberger
- Department of Infectious Diseases, Medical Microbiology and Hospital Hygiene, University Hospital Heidelberg, Im Neuenheimer Feld 324, Heidelberg, 69120, Germany
- Current address:Pharmacy Department, University Hospital Heidelberg, Im Neuenheimer Feld 670, Heidelberg, 69120, Germany
| | - T Eigenbrod
- Department of Infectious Diseases, Medical Microbiology and Hospital Hygiene, University Hospital Heidelberg, Im Neuenheimer Feld 324, Heidelberg, 69120, Germany
- Current address:SLK Kliniken Heilbronn GmbH, Institute of Laboratory Medicine, Am Gesundbrunnen 20-26, Heilbronn, 74078, Germany
| | - S Boutin
- Department of Infectious Diseases, Medical Microbiology and Hospital Hygiene, University Hospital Heidelberg, Im Neuenheimer Feld 324, Heidelberg, 69120, Germany
| | - K Heeg
- Department of Infectious Diseases, Medical Microbiology and Hospital Hygiene, University Hospital Heidelberg, Im Neuenheimer Feld 324, Heidelberg, 69120, Germany
| | - K A Bode
- Department of Infectious Diseases, Medical Microbiology and Hospital Hygiene, University Hospital Heidelberg, Im Neuenheimer Feld 324, Heidelberg, 69120, Germany
- Current address:Laboratory Dr. Limbach and Colleagues, Department Molecular Diagnostics, Am Breitspiel 15, Heidelberg, 69126, Germany
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Mirhakkak MH, Chen X, Ni Y, Heinekamp T, Sae-Ong T, Xu LL, Kurzai O, Barber AE, Brakhage AA, Boutin S, Schäuble S, Panagiotou G. Genome-scale metabolic modeling of Aspergillus fumigatus strains reveals growth dependencies on the lung microbiome. Nat Commun 2023; 14:4369. [PMID: 37474497 PMCID: PMC10359302 DOI: 10.1038/s41467-023-39982-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Accepted: 07/03/2023] [Indexed: 07/22/2023] Open
Abstract
Aspergillus fumigatus, an opportunistic human pathogen, frequently infects the lungs of people with cystic fibrosis and is one of the most common causes of infectious-disease death in immunocompromised patients. Here, we construct 252 strain-specific, genome-scale metabolic models of this important fungal pathogen to study and better understand the metabolic component of its pathogenic versatility. The models show that 23.1% of A. fumigatus metabolic reactions are not conserved across strains and are mainly associated with amino acid, nucleotide, and nitrogen metabolism. Profiles of non-conserved reactions and growth-supporting reaction fluxes are sufficient to differentiate strains, for example by environmental or clinical origin. In addition, shotgun metagenomics analysis of sputum from 40 cystic fibrosis patients (15 females, 25 males) before and after diagnosis with an A. fumigatus colonization suggests that the fungus shapes the lung microbiome towards a more beneficial fungal growth environment associated with aromatic amino acid availability and the shikimate pathway. Our findings are starting points for the development of drugs or microbiome intervention strategies targeting fungal metabolic needs for survival and colonization in the non-native environment of the human lung.
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Affiliation(s)
- Mohammad H Mirhakkak
- Department of Microbiome Dynamics, Leibniz Institute for Natural Product Research and Infection Biology (Leibniz-HKI), 07745, Jena, Germany
| | - Xiuqiang Chen
- Department of Microbiome Dynamics, Leibniz Institute for Natural Product Research and Infection Biology (Leibniz-HKI), 07745, Jena, Germany
| | - Yueqiong Ni
- Department of Microbiome Dynamics, Leibniz Institute for Natural Product Research and Infection Biology (Leibniz-HKI), 07745, Jena, Germany
| | - Thorsten Heinekamp
- Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology (Leibniz-HKI), 07745, Jena, Germany
| | - Tongta Sae-Ong
- Department of Microbiome Dynamics, Leibniz Institute for Natural Product Research and Infection Biology (Leibniz-HKI), 07745, Jena, Germany
| | - Lin-Lin Xu
- Department of Microbiome Dynamics, Leibniz Institute for Natural Product Research and Infection Biology (Leibniz-HKI), 07745, Jena, Germany
| | - Oliver Kurzai
- Institute for Hygiene and Microbiology, University of Würzburg, 97080, Würzburg, Germany
- Research Group Fungal Septomics, Leibniz Institute of Natural Product Research and Infection Biology (Leibniz-HKI), 07745, Jena, Germany
- National Reference Center for Invasive Fungal Infections (NRZMyk), Leibniz Institute of Natural Product Research and Infection Biology (Leibniz-HKI), 07745, Jena, Germany
| | - Amelia E Barber
- Junior Research Group Fungal Informatics, Institute of Microbiology, Friedrich-Schiller-University Jena, 07745, Jena, Germany
| | - Axel A Brakhage
- Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology (Leibniz-HKI), 07745, Jena, Germany
- Institute of Microbiology, Friedrich Schiller University Jena, 07745, Jena, Germany
| | - Sebastien Boutin
- Department of Infectious Diseases and Microbiology, University of Lübeck, 23562, Lübeck, Germany
- Translational Lung Research Center Heidelberg (TLRC), German Center for Lung Research (DZL), University of Heidelberg, 69120, Heidelberg, Germany
| | - Sascha Schäuble
- Department of Microbiome Dynamics, Leibniz Institute for Natural Product Research and Infection Biology (Leibniz-HKI), 07745, Jena, Germany.
| | - Gianni Panagiotou
- Department of Microbiome Dynamics, Leibniz Institute for Natural Product Research and Infection Biology (Leibniz-HKI), 07745, Jena, Germany.
- Department of Medicine and State Key Laboratory of Pharmaceutical Biotechnology, University of Hong Kong, Hong Kong, China.
- Friedrich Schiller University, Faculty of Biological Sciences, Jena, 07745, Germany.
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Anderson AC, von Ohle C, Frese C, Boutin S, Bridson C, Schoilew K, Peikert SA, Hellwig E, Pelz K, Wittmer A, Wolff D, Al-Ahmad A. The oral microbiota is a reservoir for antimicrobial resistance: resistome and phenotypic resistance characteristics of oral biofilm in health, caries, and periodontitis. Ann Clin Microbiol Antimicrob 2023; 22:37. [PMID: 37179329 PMCID: PMC10183135 DOI: 10.1186/s12941-023-00585-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Accepted: 04/13/2023] [Indexed: 05/15/2023] Open
Abstract
BACKGROUND Antimicrobial resistance (AMR) is an ever-growing threat to modern medicine and, according to the latest reports, it causes nearly twice as many deaths globally as AIDS or malaria. Elucidating reservoirs and dissemination routes of antimicrobial resistance genes (ARGs) are essential in fighting AMR. Human commensals represent an important reservoir, which is underexplored for the oral microbiota. Here, we set out to investigate the resistome and phenotypic resistance of oral biofilm microbiota from 179 orally healthy (H), caries active (C), and periodontally diseased (P) individuals (TRN: DRKS00013119, Registration date: 22.10.2022). The samples were analysed using shotgun metagenomic sequencing combined, for the first time, with culture technique. A selection of 997 isolates was tested for resistance to relevant antibiotics. RESULTS The shotgun metagenomics sequencing resulted in 2,069,295,923 reads classified into 4856 species-level OTUs. PERMANOVA analysis of beta-diversity revealed significant differences between the groups regarding their microbiota composition and their ARG profile. The samples were clustered into three ecotypes based on their microbial composition. The bacterial composition of H and C samples greatly overlapped and was based on ecotypes 1 and 2 whereas ecotype 3 was only detected in periodontitis. We found 64 ARGs conveying resistance to 36 antibiotics, particularly to tetracycline, macrolide-lincosamide-streptogramin, and beta-lactam antibiotics, and a correspondingly high prevalence of phenotypic resistance. Based on the microbiota composition, these ARGs cluster in different resistotypes, and a higher prevalence is found in healthy and caries active than in periodontally diseased individuals. There was a significant association between the resistotypes and the ecotypes. Although numerous associations were found between specific antibiotic resistance and bacterial taxa, only a few taxa showed matching associations with both genotypic and phenotypic analyses. CONCLUSIONS Our findings show the importance of the oral microbiota from different niches within the oral cavity as a reservoir for antibiotic resistance. Additionally, the present study showed the need for using more than one method to reveal antibiotic resistance within the total oral biofilm, as a clear mismatch between the shotgun metagenomics method and the phenotypic resistance characterization was shown.
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Affiliation(s)
- A C Anderson
- Department of Operative Dentistry and Periodontology, Medical Center, Faculty of Medicine, University of Freiburg, Hugstetter Straße 55, 79106, Freiburg, Germany
| | - C von Ohle
- Department of Conservative Dentistry, Periodontology and Endodontology, University Centre of Dentistry, Oral Medicine and Maxillofacial Surgery, University Hospital Tübingen, Tübingen, Germany
| | - C Frese
- Department of Conservative Dentistry, Clinic for Oral, Dental and Maxillofacial Diseases, University Hospital Heidelberg, Heidelberg, Germany
| | - S Boutin
- Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg University Hospital, Heidelberg, Germany
- Translational Lung Research Center Heidelberg (TLRC), German Center for Lung Research (DZL), Heidelberg, Germany
| | - C Bridson
- Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg University Hospital, Heidelberg, Germany
- Translational Lung Research Center Heidelberg (TLRC), German Center for Lung Research (DZL), Heidelberg, Germany
| | - K Schoilew
- Department of Conservative Dentistry, Clinic for Oral, Dental and Maxillofacial Diseases, University Hospital Heidelberg, Heidelberg, Germany
| | - S A Peikert
- Department of Operative Dentistry and Periodontology, Medical Center, Faculty of Medicine, University of Freiburg, Hugstetter Straße 55, 79106, Freiburg, Germany
| | - E Hellwig
- Department of Operative Dentistry and Periodontology, Medical Center, Faculty of Medicine, University of Freiburg, Hugstetter Straße 55, 79106, Freiburg, Germany
| | - K Pelz
- Institute of Medical Microbiology and Hygiene, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - A Wittmer
- Institute of Medical Microbiology and Hygiene, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - D Wolff
- Department of Conservative Dentistry, Clinic for Oral, Dental and Maxillofacial Diseases, University Hospital Heidelberg, Heidelberg, Germany
| | - A Al-Ahmad
- Department of Operative Dentistry and Periodontology, Medical Center, Faculty of Medicine, University of Freiburg, Hugstetter Straße 55, 79106, Freiburg, Germany.
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Boutin S, Elder J, Sothilingam N, Davis P, Oyedokun T. Epidemiology and outcomes for level 1 and 2 traumas during the first wave of COVID19 in a Canadian centre. Sci Rep 2022; 12:20345. [PMID: 36437249 PMCID: PMC9701679 DOI: 10.1038/s41598-022-23625-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Accepted: 11/02/2022] [Indexed: 11/28/2022] Open
Abstract
To determine if lockdown measures imposed during the first wave of the COVID19 pandemic affected trauma patterns, volumes, and outcomes in a western Canadian level 1 trauma center, we performed a retrospective cohort study assessing level 1 and 2 trauma patients presenting to our center during the initial COVID19 "lockdown" period (March 15-June 14, 2020) compared to a similar cohort of patients presenting during a "control" period 1 year prior (March 15-June 14, 2019). Overall, we saw a 7.8% reduction in trauma volumes during the lockdown period, and this was associated with a shorter average ED length of stay (6.2 ± 4.7 h vs. 9.7 ± 11.8 h, p = 0.003), reduced time to computed tomography (88.5 ± 68.2 min vs. 105.1 ± 65.5 min, p < 0.001), a reduction in intensive care unit admissions (11.0 ± 4.9% vs. 20.0 ± 15.5%, p = 0.001), and higher injury severity score (6.5 ± 7.6 vs. 6.2 ± 9.5, p = 0.04). Our findings suggest that lockdown measures imposed during the first wave of the COVID19 pandemic had a significant impact on trauma patients.
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Affiliation(s)
- S. Boutin
- grid.412271.30000 0004 0462 8356Department of Emergency Medicine, Royal University Hospital, University of Saskatchewan, 103 Hospital Drive, Saskatoon, SK S7N 0W8 Canada
| | - J. Elder
- grid.412271.30000 0004 0462 8356Department of Emergency Medicine, Royal University Hospital, University of Saskatchewan, 103 Hospital Drive, Saskatoon, SK S7N 0W8 Canada
| | - N. Sothilingam
- grid.412271.30000 0004 0462 8356Department of Surgery, Royal University Hospital, University of Saskatchewan, 103 Hospital Drive, Saskatoon, SK S7N 0W8 Canada
| | - P. Davis
- grid.412271.30000 0004 0462 8356Department of Emergency Medicine, Royal University Hospital, University of Saskatchewan, 103 Hospital Drive, Saskatoon, SK S7N 0W8 Canada
| | - T. Oyedokun
- grid.412271.30000 0004 0462 8356Department of Emergency Medicine, Royal University Hospital, University of Saskatchewan, 103 Hospital Drive, Saskatoon, SK S7N 0W8 Canada
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Martinig A, Karst H, Siracusa E, Studd E, McAdam A, Dantzer B, Delaney D, Lane J, Pokharel P, Boutin S. Animal personality: a comparison of standardized assays and focal observations in North American red squirrels. Anim Behav 2022. [DOI: 10.1016/j.anbehav.2022.05.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Dickie M, Serrouya R, Avgar T, McLoughlin P, McNay RS, DeMars C, Boutin S, Ford AT. Resource exploitation efficiency collapses the home range of an apex predator. Ecology 2022; 103:e3642. [DOI: 10.1002/ecy.3642] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Revised: 10/13/2021] [Accepted: 10/29/2021] [Indexed: 11/07/2022]
Affiliation(s)
- M. Dickie
- Alberta Biodiversity Monitoring Institute, University of Alberta Edmonton Alberta Canada
- Department of Biology University of British Columbia Kelowna British Columbia Canada
| | - R. Serrouya
- Alberta Biodiversity Monitoring Institute, University of Alberta Edmonton Alberta Canada
| | - T. Avgar
- Department of Wildland Resources and Ecology Center Utah State University Logan Utah US
| | - P. McLoughlin
- Department of Biology University of Saskatchewan, 112 Science Place Saskatoon Saskatchewan Canada
| | - R. S. McNay
- Wildlife Infometrics, 3 – 220 Mackenzie Blvd Mackenzie British Columbia Canada
| | - C. DeMars
- Alberta Biodiversity Monitoring Institute, University of Alberta Edmonton Alberta Canada
| | - S. Boutin
- Department of Biological Sciences University of Alberta Edmonton Alberta Canada
| | - A. T. Ford
- Department of Biology University of British Columbia Kelowna British Columbia Canada
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Frese C, Reissfelder LS, Kilian S, Felten A, Laurisch L, Schoilew K, Boutin S. Can the Acid-formation Potential of Saliva Detect a Caries-related Shift in the Oral Microbiome? Oral Health Prev Dent 2022; 20:51-60. [PMID: 35049252 DOI: 10.3290/j.ohpd.b2573053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
PURPOSE To determine acid-formation potential of saliva and evaluate whether this method corresponds with microbiome composition of individuals with and without caries. MATERIALS AND METHODS A clinical, controlled pilot study was performed with two groups: individuals without caries (n = 25; DMFT = 0) and individuals with at least one active carious lesion (n = 25; DMFT>0). A detailed intraoral examination was performed, and the gingival bleeding index (GBI) and plaque index (PI) were recorded. The acid-formation potential was measured (ΔpH) after 1 h. Streptococcus mutans (SM) and lactobacilli (LB) were also quantified. Intergroup comparisons were made using the Mann-Whitney U-test. The diagnostic value was evaluated using the receiver operating characteristics (ROC) method and area under the curve (AUC) values were calculated. The saliva microbiome was analysed by 16S rDNA next-generation sequencing. RESULTS A statistically significant difference was found in ΔpH, with the 'caries' group showing a higher mean value after 1 h ('healthy' = 1.1,'caries' = 1.4; p = 0.035). The AUC values were moderate to good (ΔpH = 0.67; SM = 0.83; LB = 0.83;1 = ideal). Streptococcus mutans and Lactobacilli were more frequently detected in the 'caries' group (p < 0.001), as were statistically significantly higher GBI (p = 0.006) and PI (p = 0.001). The saliva microbiome had a higher α-diversity and greater richness in individuals with active caries. The incidence of the genera Alloprevotella, Prevotella, Campylobacter and Veillonella was statistically significantly higher in the 'healthy' group. The incidence of the genera Fretibacterium, Lactobacillus, and Leptotrichia, as well as the phyla Spirochaetes and Synergistetes, was statistically significantly higher in the 'caries' group. CONCLUSION Further studies must be carried out to determine the extent to which both tests are suitable for predicting future caries development.
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Kapur A, Boutin S, Lyster K, Irvine J, Sawchuk K. Retrospective application of the HEAR score on patients evacuated for chest pain: Assessing the utility of point-of-care troponin. Can J Rural Med 2022; 27:16-21. [PMID: 34975112 DOI: 10.4103/cjrm.cjrm_23_21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Introduction The HEART scoring system codifies the clinical gestalt used by physicians with 0-2 points assigned to 5 criteria (history, electrocardiography, age, risk factors and troponin). This scoring provides a prognostic tool that assists in disposition planning. The use of a truncated HEART score, minus the troponin data (HEAR score), was used for patients presenting with chest pain at one of four outpost nursing stations served by La Ronge Health Centre in northern Saskatchewan. These nursing stations have no onsite physician and no ability to obtain any troponin data. This study set out to determine if there was any utility in conducting point-of-care (PoC) troponins in these nursing outposts. Materials and Methods A retrospective analysis was conducted using the La Ronge regional electronic medical record by searching for all patients for whom an outpost nurse had called a physician regarding chest pain symptoms between 01 January 2011 and 31 December 2016. The HEAR and HEART score were then calculated for each individual presentation of patients with chest pain that met inclusion and exclusion criteria. Results By calculating both the patient's HEART score before evacuation from the outposts and after (i.e. with the troponin data), we were able to determine that, in 89.4% of cases (110/123 events), patients would require evacuation regardless of the troponin values due to a HEART score ≥4. In 10.6% (13/124 events) of cases, the patients who were evacuated had a HEART score ≤3, and in only one case did the troponin data increase this score. Conclusions The majority of patients would continue to be evacuated regardless of the result of their PoC troponin due to an already elevated HEAR score. PoC troponin is unlikely to reduce the rate of evacuation of patients with chest pain from the nursing stations served by the La Ronge Health Centre.
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Affiliation(s)
- A Kapur
- Emergency Medicine, University of Saskatchewan, Regina, SK, Canada
| | - S Boutin
- Emergency Medicine, University of Saskatchewan, Saskatoon, SK, Canada
| | - K Lyster
- Family Medicine, University of Saskatchewan, Regina, SK, Canada
| | - J Irvine
- Internal Medicine, Regina Qu'appelle Health Region, Regina, SK, Canada
| | - K Sawchuk
- Academic Family Medicine, University of Saskatchewan, LaRonge, SK, Canada
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Doran‐Myers D, Kenney AJ, Krebs CJ, Lamb CT, Menzies AK, Murray D, Studd EK, Whittington J, Boutin S. Density estimates for Canada lynx vary among estimation methods. Ecosphere 2021. [DOI: 10.1002/ecs2.3774] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Affiliation(s)
- D. Doran‐Myers
- Biological Sciences Centre University of Alberta Edmonton Alberta T6G 2E9 Canada
| | - A. J. Kenney
- Department of Zoology University of British Columbia Vancouver British Columbia V6T 1Z4 Canada
| | - C. J. Krebs
- Department of Zoology University of British Columbia Vancouver British Columbia V6T 1Z4 Canada
| | - C. T. Lamb
- Biological Sciences Centre University of Alberta Edmonton Alberta T6G 2E9 Canada
| | - A. K. Menzies
- Department of Natural Resource Sciences McGill University Montréal Québec H9X 3V9 Canada
| | - D. Murray
- Department of Biology Trent University Peterborough Ontario K0L 2H0 Canada
| | - E. K. Studd
- Department of Natural Resource Sciences McGill University Montréal Québec H9X 3V9 Canada
| | - J. Whittington
- Parks Canada Banff National Park Resource Conservation Banff Alberta T1L 1K2 Canada
| | - S. Boutin
- Biological Sciences Centre University of Alberta Edmonton Alberta T6G 2E9 Canada
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Tourelle KM, Boutin S, Weigand MA, Schmitt FCF. Sepsis and the Human Microbiome. Just Another Kind of Organ Failure? A Review. J Clin Med 2021; 10:jcm10214831. [PMID: 34768350 PMCID: PMC8585089 DOI: 10.3390/jcm10214831] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Revised: 10/17/2021] [Accepted: 10/18/2021] [Indexed: 01/05/2023] Open
Abstract
Next-generation sequencing (NGS) has been further optimised during the last years and has given us new insights into the human microbiome. The 16S rDNA sequencing, especially, is a cheap, fast, and reliable method that can reveal significantly more microorganisms compared to culture-based diagnostics. It might be a useful method for patients suffering from severe sepsis and at risk of organ failure because early detection and differentiation between healthy and harmful microorganisms are essential for effective therapy. In particular, the gut and lung microbiome in critically ill patients have been probed by NGS. For this review, an iterative approach was used. Current data suggest that an altered microbiome with a decreased alpha-diversity compared to healthy individuals could negatively influence the individual patient’s outcome. In the future, NGS may not only contribute to the diagnosis of complications. Patients at risk could also be identified before surgery or even during their stay in an intensive care unit. Unfortunately, there is still a lack of knowledge to make precise statements about what constitutes a healthy microbiome, which patients exactly have an increased perioperative risk, and what could be a possible therapy to strengthen the microbiome. This work is an iterative review that presents the current state of knowledge in this field.
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Affiliation(s)
- Kevin M. Tourelle
- Department of Anesthesiology, Heidelberg University Hospital, 420, Im Neuenheimer Feld, 69120 Heidelberg, Germany; (K.M.T.); (M.A.W.)
| | - Sebastien Boutin
- Department of Infectious Disease, Medical Microbiology and Hygiene, University Hospital, 324, Im Neuenheimer Feld, 69120 Heidelberg, Germany;
| | - Markus A. Weigand
- Department of Anesthesiology, Heidelberg University Hospital, 420, Im Neuenheimer Feld, 69120 Heidelberg, Germany; (K.M.T.); (M.A.W.)
| | - Felix C. F. Schmitt
- Department of Anesthesiology, Heidelberg University Hospital, 420, Im Neuenheimer Feld, 69120 Heidelberg, Germany; (K.M.T.); (M.A.W.)
- Correspondence:
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Muhandes L, Chapsa M, Pippel M, Behrendt R, Ge Y, Dahl A, Yi B, Dalpke A, Winkler S, Hiller M, Boutin S, Beissert S, Jessberger R, Fallon PG, Roers A. Low Threshold for Cutaneous Allergen Sensitization but No Spontaneous Dermatitis or Atopy in FLG-Deficient Mice. J Invest Dermatol 2021; 141:2611-2619.e2. [PMID: 33894197 DOI: 10.1016/j.jid.2021.02.763] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Revised: 01/19/2021] [Accepted: 02/03/2021] [Indexed: 12/14/2022]
Abstract
Loss of FLG causes ichthyosis vulgaris. Reduced FLG expression compromises epidermal barrier function and is associated with atopic dermatitis, allergy, and asthma. The flaky tail mouse harbors two mutations that affect the skin barrier, Flgft, resulting in hypomorphic FLG expression, and Tmem79ma, inactivating TMEM79. Mice defective only for TMEM79 featured dermatitis and systemic atopy, but also Flgft/ft BALB/c congenic mice developed eczema, high IgE, and spontaneous asthma, suggesting that FLG protects from atopy. In contrast, a targeted Flg-knockout mutation backcrossed to BALB/c did not result in dermatitis or atopy. To resolve this discrepancy, we generated FLG-deficient mice on pure BALB/c background by inactivating Flg in BALB/c embryos. These mice feature an ichthyosis phenotype, barrier defect, and facilitated percutaneous sensitization. However, they do not develop dermatitis or atopy. Whole-genome sequencing of the atopic Flgft BALB/c congenics revealed that they were homozygous for the atopy-causing Tmem79matted mutation. In summary, we show that FLG deficiency does not cause atopy in mice, in line with lack of atopic disease in a fraction of patients with ichthyosis vulgaris carrying two Flg null alleles. However, the absence of FLG likely promotes and modulates dermatitis caused by other genetic barrier defects.
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Affiliation(s)
- Lina Muhandes
- Institute for Immunology, Faculty of Medicine Carl Gustav Carus, Dresden University of Technology, Dresden, Germany
| | - Maria Chapsa
- Department of Dermatology, University Hospital Carl Gustav Carus, School of Medicine, Dresden University of Technology, Dresden, Germany
| | - Martin Pippel
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
| | - Rayk Behrendt
- Institute for Immunology, Faculty of Medicine Carl Gustav Carus, Dresden University of Technology, Dresden, Germany
| | - Yan Ge
- Institute for Immunology, Faculty of Medicine Carl Gustav Carus, Dresden University of Technology, Dresden, Germany
| | - Andreas Dahl
- Deep Sequencing Group, Center for Regenerative Therapies Dresden, Dresden University of Technology, Dresden, Germany
| | - Buqing Yi
- Institute of Medical Microbiology and Hygiene, Faculty of Medicine Carl Gustav Carus, Dresden University of Technology, Dresden, Germany
| | - Alexander Dalpke
- Institute of Medical Microbiology and Hygiene, Faculty of Medicine Carl Gustav Carus, Dresden University of Technology, Dresden, Germany
| | - Sylke Winkler
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
| | - Michael Hiller
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
| | - Sebastien Boutin
- Departmant of Infectious Diseases, Medical Microbiology and Hygiene, University Hospital Heidelberg, Heidelberg, Germany
| | - Stefan Beissert
- Department of Dermatology, University Hospital Carl Gustav Carus, School of Medicine, Dresden University of Technology, Dresden, Germany
| | - Rolf Jessberger
- Institute of Physiological Chemistry, Faculty of Medicine Carl Gustav Carus, Dresden University of Technology, Dresden, Germany
| | - Padraic G Fallon
- School of Medicine, Trinity Biomedical Sciences Institute, Trinity College Dublin, The University of Dublin, Dublin, Ireland
| | - Axel Roers
- Institute for Immunology, Faculty of Medicine Carl Gustav Carus, Dresden University of Technology, Dresden, Germany.
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13
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Tony-Odigie A, Boutin S, Dalpke A, Yi B. WS01.1 Commensal bacteria in cystic fibrosis airway infections modulate growth and inflammation of P. aeruginosa. J Cyst Fibros 2021. [DOI: 10.1016/s1569-1993(21)00915-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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14
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Silva J, Nielsen S, McLoughlin P, Rodgers A, Hague C, Boutin S. Comparison of pre-fire and post-fire space use reveals varied responses by woodland caribou (Rangifer tarandus caribou) in the Boreal Shield. CAN J ZOOL 2020. [DOI: 10.1139/cjz-2020-0139] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
By regulating successional dynamics in Canada’s boreal forest, fires can affect the distribution of the Threatened woodland caribou (Rangifer tarandus caribou (Gmelin, 1788)). Caribou tend to avoid areas burned within the last 40 years; however, few studies have compared pre-fire and post-fire caribou observations. In this study, we used caribou GPS locations from the Boreal Shield of Saskatchewan, Canada, to assess the short-term response of caribou to areas that burned while they were collared (hereafter recent burns). We used a “before–after, control–impact” design to compare the overlap of pre-fire and post-fire seasonal home ranges to the overlap of year-to-year seasonal home ranges. Caribou rarely encountered recent burns and when they did, they adjusted their space use in variable and complex ways that were largely indistinguishable from regular, interannual variation. Caribou tended to reduce use of recent burns in summer–autumn and winter, but not during the calving season, in some cases shifting their home range to incorporate more burned habitat. We conclude that recently burned areas (<5 years) may provide habitat value to woodland caribou, particularly during the calving season, requiring a more flexible approach to interpret fire in habitat management strategies.
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Affiliation(s)
- J.A. Silva
- Department of Biological Sciences, University of Alberta, CW 405 Biological Sciences Building, Edmonton, AB T6G 2E9, Canada
| | - S.E. Nielsen
- Department of Renewable Resources, University of Alberta, 751 General Services Building, Edmonton, AB T6G 2H1, Canada
| | - P.D. McLoughlin
- Department of Biology, University of Saskatchewan, 112 Science Place, Saskatoon, SK S7N 5E2, Canada
| | - A.R. Rodgers
- Centre for Northern Forest Ecosystem Research, Ontario Ministry of Natural Resources and Forestry, 421 James Street South, Thunder Bay, ON P7E 2V6, Canada
| | - C. Hague
- Ontario Parks, Ministry of the Environment, Conservation and Parks, 227 Howey Street, Red Lake, ON P0V 2M0, Canada
| | - S. Boutin
- Department of Biological Sciences, University of Alberta, CW 405 Biological Sciences Building, Edmonton, AB T6G 2E9, Canada
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15
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Chiasson R, Aboulhouda I, Roy G, Boucher A, Gagnon MP, Boutin S, Kankindi B, Ouellet M. E-health, community housing and nursing interprofessional clinic for equity. Eur J Public Health 2020. [DOI: 10.1093/eurpub/ckaa166.025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Problem
From a focus on transmittable diseases, attention to prevention and promotion has become a priority since 2011. Influenced by the Political Declaration of the High-level Meeting on the Prevention and Control of Non-communicable Diseases and The Rio Declaration on Social Determinants of Health, many countries across the world have identified targets aiming at chronic diseases prevention, preventable death and reduced morbidity. Individual behavior changes remain a challenge for health practitioners. Shanghai Declaration suggests that health literacy is a critical determinant for healthy choices and decisions.
Description
A healthy living program has been developed and offered in partnership between local public health and university Laval. We present the case of the community housing Mimosa du Quartier and its preventative nursing clinic. Eight-week Preventative circles and e-prevention interventions from kinesiologist, nutritionist and nurses are explored. IPads were provided to families and we used REACT technology.
Results
Discussion on e-health relevance, feasibility and impact is proposed. Program description, personalised action plan using SMART goals, health literacy and prevention gains are revealed. Relevance, feasibility and perceived impact are discussed. Learning about the user's experience, we can improve the telehealth program in support of continuity of care within the homes of families. This strategy is key to self-management and empowerment Lessons. Health promotion with e-prevention is strategic for sustainable family health. Combining strategies can improve outcomes. This pilot research shows promising results and practical considerations are given to the importance of the relational and alliance aspect of the care relationship even through technology use, to digital literacy capabilities, to family's motivation and engagement and finally to the advantages provided by the technology use.
Key messages
E-health prevention is an innovative avenue to fight chronic disease. Increased engagement in self-management leads to equity and less adverse outcomes for vulnerable families.
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Affiliation(s)
- R Chiasson
- Faculté des Sciences Infirmières, Université Laval, Québec, Canada
| | - I Aboulhouda
- Faculté des Sciences Infirmières, Université Laval, Québec, Canada
| | - G Roy
- Faculté des Médecine, Université Laval, Québec, Canada
| | - A Boucher
- École de Nutrition, Université Laval, Québec, Canada
| | - M-P Gagnon
- Faculté des Sciences Infirmières, Université Laval, Québec, Canada
| | | | - B Kankindi
- Clinique infirmière, Mimosa du Quartier, Gatineau, Canada
| | - M Ouellet
- Faculté des Sciences Infirmières, Université Laval, Québec, Canada
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16
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Kocer K, Boutin S, Probst K, Heeg K, Nurjadi D. Whole-genome sequencing disproves two suspected transmission events of bla NDM between Pseudomonas aeruginosa and Enterobacterales in hospitalized patients. J Hosp Infect 2020; 106:372-375. [PMID: 32652213 DOI: 10.1016/j.jhin.2020.07.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Accepted: 07/06/2020] [Indexed: 11/18/2022]
Abstract
New Delhi metallo-β-lactamase (blaNDM) acquisition by Gram-negative bacteria is a primary concern due to its broad-host-range distribution. This study investigated two potential in-vivo horizontal gene transfers (HGTs) of blaNDM between Enterobacterales and Pseudomonas aeruginosa, initially indicated by polymerase chain reaction. Whole-genome sequencing showed independent parallel acquisition of two different blaNDM variants (NDM-1 and NDM-5) in P. aeruginosa and Enterobacterales, respectively. The data show that short-read sequencing provides the necessary resolution to confirm or dispute HGT by the comparison of genetic elements surrounding the gene of interest, and thus provide a timely response to potential outbreaks.
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Affiliation(s)
- K Kocer
- Heidelberg University Hospital, Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg, Germany.
| | - S Boutin
- Heidelberg University Hospital, Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg, Germany; Translational Lung Research Centre Heidelberg, Member of the German Centre for Lung Research, Heidelberg University Hospital, Heidelberg, Germany
| | - K Probst
- Heidelberg University Hospital, Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg, Germany
| | - K Heeg
- Heidelberg University Hospital, Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg, Germany
| | - D Nurjadi
- Heidelberg University Hospital, Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg, Germany
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17
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Studd EK, Menzies AK, Siracusa ER, Dantzer B, Lane JE, McAdam AG, Boutin S, Humphries MM. Optimisation of energetic and reproductive gains explains behavioural responses to environmental variation across seasons and years. Ecol Lett 2020; 23:841-850. [PMID: 32189469 DOI: 10.1111/ele.13494] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Revised: 12/09/2019] [Accepted: 02/21/2020] [Indexed: 12/31/2022]
Abstract
Animals switch between inactive and active states, simultaneously impacting their energy intake, energy expenditure and predation risk, and collectively defining how they engage with environmental variation and trophic interactions. We assess daily activity responses to long-term variation in temperature, resources and mating opportunities to examine whether individuals choose to be active or inactive according to an optimisation of the relative energetic and reproductive gains each state offers. We show that this simplified behavioural decision approach predicts most activity variation (R2 = 0.83) expressed by free-ranging red squirrels over 4 years, as quantified through accelerometer recordings (489 deployments; 5066 squirrel-days). Recognising activity as a determinant of energetic status, the predictability of activity variation aggregated at a daily scale, and the clear signal that behaviour is environmentally forced through optimisation of gain, provides an integrated approach to examine behavioural variation as an intermediary between environmental variation and energetic, life-history and ecological outcomes.
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Affiliation(s)
- E K Studd
- Department of Natural Resource Sciences, McGill University, Sainte-Anne-de-Bellevue, Bellevue, QC, Canada.,Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada
| | - A K Menzies
- Department of Natural Resource Sciences, McGill University, Sainte-Anne-de-Bellevue, Bellevue, QC, Canada
| | - E R Siracusa
- Department of Integrative Biology, University of Guelph, Guelph, ON, Canada
| | - B Dantzer
- Department of Psychology, University of Michigan, Ann Arbor, MI, USA.,Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI, USA
| | - J E Lane
- Department of Biology, University of Saskatchewan, Saskatoon, SK, Canada
| | - A G McAdam
- Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA
| | - S Boutin
- Department of Biological Sciences, University of Alberta, Edmonton, AB, Canada
| | - M M Humphries
- Department of Natural Resource Sciences, McGill University, Sainte-Anne-de-Bellevue, Bellevue, QC, Canada
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18
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Kocer K, Boutin S, Dalpke AH, Heeg K, Mutters NT, Nurjadi D. Comparative genomic analysis reveals a high prevalence of inter-species in vivo transfer of carbapenem-resistance plasmids in patients with haematological malignancies. Clin Microbiol Infect 2019; 26:780.e1-780.e8. [PMID: 31654794 DOI: 10.1016/j.cmi.2019.10.014] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 10/04/2019] [Accepted: 10/10/2019] [Indexed: 12/28/2022]
Abstract
OBJECTIVES Conjugative gene transfer has been considered as one of the driving factors in the transmission and dissemination of multidrug resistance in bacteria. The abundance of antimicrobial resistance genes and bacteria in the gut microbiome may provide the ideal platform for plasmid exchange. Systematic data on in vivo horizontal gene transfer (HGT) and its frequency are scarce. MATERIALS AND METHODS One hundred and ninety-six carbapenem-resistant gram-negative bacilli (CRGNBs) from 179 patients (158 inpatients and 21 outpatients) between January 2016 and April 2017 were analysed retrospectively. Alignment of plasmid content for 32 isolates from 16 patients with multiple CRGNB species was performed from whole-genome sequencing (WGS) data. RESULTS Sixteen of the 179 patients (8.9%) were colonized and/or infected with more than one CRGNB species; 11/179 (6.1%) were colonized by multiple carbapenem-resistant Enterobacteriaceae (CREs) and 5/179 (2.8%) by carbapenem-resistant non-fermenters (CRNFs) and CREs. WGS suggested interspecies transfer as the predominant mechanism rather than independent acquisition in 8/10 patients (80%, one non-recoverable isolate) with multiple CREs but not in CRNF-CRE combinations; 30/158 inpatients (20%) had underlying haematological malignancies, and they are more likely to exhibit multiple CRGNB strains (OR 3.0, 95%CI 0.98-8.89, p 0.05) and CRE strains (OR 3.9, 95%CI 1.02-14.58, p 0.04) during hospital stay compared to other patient groups. CONCLUSION Our data give insight into the occurrence of natural in vivo HGT in a clinical setting. Better understanding of HGT will help optimize containment measures and may guide antibiotic stewardship programmes.
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Affiliation(s)
- K Kocer
- Heidelberg University Hospital, Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg, Germany; Deutsches Zentrum für Infektionsforschung (DZIF), Department of Infectious Diseases, Heidelberg University Hospital, Germany
| | - S Boutin
- Heidelberg University Hospital, Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg, Germany; Translational Lung Research Centre Heidelberg (TLRC), Member of the German Centre for Lung Research (DZL), Heidelberg University Hospital, Germany
| | - A H Dalpke
- Heidelberg University Hospital, Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg, Germany; Institute of Medical Microbiology, Medical Faculty, Technical University Dresden, Dresden, Germany
| | - K Heeg
- Heidelberg University Hospital, Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg, Germany
| | - N T Mutters
- Heidelberg University Hospital, Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg, Germany; Institute for Infection Prevention and Hospital Epidemiology, Medical Centre, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - D Nurjadi
- Heidelberg University Hospital, Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg, Germany.
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19
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Abstract
Natural disturbance plays a key role in shaping community dynamics. Within Canadian boreal forests, the dominant form of natural disturbance is fire, and its effects are thought to influence the dynamics between moose (Alces alces (Linnaeus, 1758)) and the boreal ecotype of woodland caribou (Rangifer tarandus caribou (Gmelin, 1788)). Boreal caribou are considered “threatened” and population declines are attributed, at least in part, to disturbance-mediated apparent competition (DMAC) with moose. Here, we tested a primary prediction of the DMAC hypothesis: that moose respond positively to burns within and adjacent to the caribou range. We assessed moose selection for ≤25-year-old burns (when selection is predicted to be strongest) at multiple spatial scales and evaluated whether moose density was correlated with the extent of ≤40-year-old burns (a time frame predicted to negatively affect caribou). Against expectation, moose showed avoidance and low use of ≤25-year-old burns at all scales, regardless of burn age, season, and type of land cover burned. These findings mirrored the demographic response, as we found no correlation between ≤40-year-old burns and moose density. By contradicting the prevailing hypothesis linking fires to caribou population declines, our results highlight the need to understand regional variation in disturbance impacts on caribou populations.
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Affiliation(s)
- C.A. DeMars
- Caribou Monitoring Unit, Alberta Biodiversity Monitoring Institute, Edmonton, Alberta, Canada
| | - R. Serrouya
- Caribou Monitoring Unit, Alberta Biodiversity Monitoring Institute, Edmonton, Alberta, Canada
| | - M.A. Mumma
- Ecosystem Science and Management, University of Northern British Columbia, Prince George, B.C., Canada
| | - M.P. Gillingham
- Ecosystem Science and Management, University of Northern British Columbia, Prince George, B.C., Canada
| | - R.S. McNay
- Wildlife Infometrics, Inc., Mackenzie, B.C., Canada
| | - S. Boutin
- Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada
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20
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Eichel V, Papan C, Boutin S, Pöschl J, Heeg K, Nurjadi D. Alteration of antibiotic regimen as an additional control measure in suspected multi-drug-resistant Enterobacter cloacae outbreak in a neonatal intensive care unit. J Hosp Infect 2019; 104:144-149. [PMID: 31525448 DOI: 10.1016/j.jhin.2019.09.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Accepted: 09/09/2019] [Indexed: 10/26/2022]
Abstract
BACKGROUND Increased occurrence of a particular species of Gram-negative bacteria (GNB), especially when multi-drug-resistant (MDR), in routine screening surveillance in neonatal intensive care units (NICUs) can be evoked by selection pressure. AIM To evaluate adaptation of the empiric antibiotic regimen for its usefulness as a control measure in suspected outbreaks in the NICU. METHODS In a retrospective outbreak analysis, cases between 1st December 2017 and 31st March 2018 were identified through microbiology and hygiene surveillance records. Furthermore, risk factors for MDR-GNB colonization were collected. Whole-genome sequencing (WGS) was performed on all isolates. Control measure documentations and interviews were employed to define interventions. As well as infection control measures, administration of third-generation cephalosporins was avoided and replaced whenever clinically acceptable as part of the intervention bundle. FINDINGS In total, nine patients were found to have rectal colonization with third-generation cephalosporin-resistant Enterobacter cloacae in routine screening surveillance in the pre-intervention period. After implementation of an infection control bundle, the incidence declined rapidly. WGS analysis revealed that two MDR E. cloacae were transmitted, and the majority were new cases. The incidence density of MDR-GNB colonization was 7.94/1000 patient-days (PD) before the intervention and 1.68/1000 PD during the altered antibiotic regimen. No infections with MDR-GNB occurred during the study. CONCLUSIONS Altering the antibiotic regimen with regard to selection pressure may be considered as part of an intervention bundle to rapidly control the emergence of MDR-GNB in suspected outbreak situations in the NICU.
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Affiliation(s)
- V Eichel
- Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg University Hospital, Heidelberg, Germany.
| | - C Papan
- Centre for Infectious Diseases, Institute of Medical Microbiology and Hygiene, Saarland University, Homburg, Germany
| | - S Boutin
- Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg University Hospital, Heidelberg, Germany
| | - J Pöschl
- Department of Neonatology, Heidelberg University Children's Hospital, Heidelberg, Germany
| | - K Heeg
- Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg University Hospital, Heidelberg, Germany
| | - D Nurjadi
- Department of Infectious Diseases, Medical Microbiology and Hygiene, Heidelberg University Hospital, Heidelberg, Germany
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21
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Gross DA, Leborgne C, Chappert P, Masurier C, Leboeuf M, Monteilhet V, Boutin S, Lemonnier FA, Davoust J, Kichler A. Induction of tumor-specific CTL responses using the C-terminal fragment of Viral protein R as cell penetrating peptide. Sci Rep 2019; 9:3937. [PMID: 30850685 PMCID: PMC6408526 DOI: 10.1038/s41598-019-40594-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2018] [Accepted: 12/14/2018] [Indexed: 12/30/2022] Open
Abstract
The discovery of tumor-associated antigens recognized by T lymphocytes opens the possibility of vaccinating cancer patients with defined antigens. However, one of the major limitation of peptide-based vaccines is the low immunogenicity of antigenic peptides. Interestingly, if these epitopes are directly delivered into the cytoplasm of antigen presenting cells, they can be efficiently presented via the direct MHC class I presentation pathway. To improve antigen entry, one promising approach is the use of cell penetrating peptides (CPPs). However, most studies use a covalent binding of the CPP with the antigen. In the present study, we focused on the C-terminal domain of Vpr which was previously demonstrated to efficiently deliver plasmid DNA into cells. We provide evidence that the peptides Vpr55-91 and Vpr55-82 possess the capacity of delivering proteins and epitopes into cell lines as well as into human primary dendritic cells, without the necessicity for a chemical linkage. Moreover, immunization of HLA-A2 transgenic mice with Vpr55-91 as the sole adjuvant is able to induce antigen-specific cytotoxic T lymphocytes against multiple tumor epitopes.
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Affiliation(s)
- D A Gross
- Genethon, 91002, Evry cedex, France. .,INSERM U1151, Institut Necker Enfants Malades, CNRS, Faculté de Médecine, Université Paris Descartes, Sorbonne Paris Cité, UMR8253, Paris, France.
| | | | - P Chappert
- Genethon, 91002, Evry cedex, France.,INSERM U1151, Institut Necker Enfants Malades, CNRS, Faculté de Médecine, Université Paris Descartes, Sorbonne Paris Cité, UMR8253, Paris, France
| | | | | | | | - S Boutin
- Genethon, 91002, Evry cedex, France
| | - F A Lemonnier
- INSERM, Unité 1016, Institut Cochin, Université Paris Descartes, Sorbonne Paris Cité, 75014, Paris, France
| | - J Davoust
- Genethon, 91002, Evry cedex, France.,INSERM U1151, Institut Necker Enfants Malades, CNRS, Faculté de Médecine, Université Paris Descartes, Sorbonne Paris Cité, UMR8253, Paris, France
| | - A Kichler
- Genethon, 91002, Evry cedex, France. .,Laboratoire de Conception et Application de Molécules Bioactives UMR7199 CNRS - Université de Strasbourg, Faculté de Pharmacie, 67401, Illkirch, France.
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22
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Nurjadi D, Fleck R, Lindner A, Schäfer J, Gertler M, Mueller A, Lagler H, Van Genderen PJJ, Caumes E, Boutin S, Kuenzli E, Gascon J, Kantele A, Grobusch MP, Heeg K, Zanger P. Import of community-associated, methicillin-resistant Staphylococcus aureus to Europe through skin and soft-tissue infection in intercontinental travellers, 2011-2016. Clin Microbiol Infect 2018; 25:739-746. [PMID: 30315958 DOI: 10.1016/j.cmi.2018.09.023] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2018] [Revised: 09/21/2018] [Accepted: 09/30/2018] [Indexed: 10/28/2022]
Abstract
OBJECTIVES Recently, following import by travel and migration, epidemic community-associated methicillin-resistant Staphylococcus aureus (CA-MRSA) has caused nosocomial outbreaks in Europe, sometimes with a fatal outcome. We describe clinico-epidemiological characteristics of CA-MRSA detected by the European Network for the Surveillance of imported S. aureus (www.staphtrav.eu) from May 2011 to November 2016. METHODS Sentinel surveillance at 13 travel clinics enrolling patients with travel-associated skin and soft-tissue infection (SSTI) and analysing lesion and nose swabs at one central laboratory. RESULTS A total of 564 independent case-patients with SSTI were enrolled and had 374 (67%) S. aureus-positive lesions, of which 14% (51/374) were MRSA. The majority of CA-MRSA isolates from SSTI were Panton-Valentine leucocidin (PVL) -positive (43/51, 84%). The risk of methicillin-resistance in imported S. aureus varied by travel region (p <0.001) and was highest in Latin America (16/57, 28%, 95% CI 17.0-41.5) and lowest in Sub-Saharan Africa (4/121, 3%, 95% CI 0.9-8.3). Major epidemic clones (USA300 / USA300 Latin-American Variant, Bengal Bay, South Pacific) accounted for more than one-third (19/51, 37%) of CA-MRSA imports. CA-MRSA SSTI in returnees was complicated (31/51 multiple lesions, 61%; 22/50 recurrences, 44%), led to health-care contact (22/51 surgical drainage, 43%; 7/50 hospitalization, 14%), was transmissible (13/47 reported similar SSTI in non-travelling contacts, 28%), and associated with S. aureus nasal colonization (28 of 51 CA-MRSA cases, 55%; 24 of 28 colonized with identical spa-type in nose and lesion, 85%). CONCLUSIONS Travel-associated CA-MRSA SSTI is a transmissible condition that leads to medical consultations and colonization of the infected host.
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Affiliation(s)
- D Nurjadi
- Department of Infectious Diseases, Medical Microbiology and Hygiene, University Clinics, Heidelberg, Germany
| | - R Fleck
- Tropenklinik, Paul-Lechler-Krankenhaus, Tübingen, Germany
| | - A Lindner
- Institute of Tropical Medicine and International Health, Charité - Universitätsmedizin Berlin, Berlin, Germany
| | - J Schäfer
- Tropenklinik, Paul-Lechler-Krankenhaus, Tübingen, Germany
| | - M Gertler
- Institute of Tropical Medicine and International Health, Charité - Universitätsmedizin Berlin, Berlin, Germany
| | - A Mueller
- Klinikum Würzburg Mitte gGmbH, Missioklinik, Tropenmedizin, Würzburg, Germany
| | - H Lagler
- Department of Medicine I, Division of Infectious Diseases and Tropical Medicine, Medical University of Vienna, Austria; Department of Tropical Medicine, University Medical Centre Hamburg Eppendorf & Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany
| | - P J J Van Genderen
- Institute for Tropical Diseases, Harbour Hospital, Rotterdam, The Netherlands
| | - E Caumes
- Service de Maladies Infectieuses et Tropicales, Groupe Hospitalier Pitié-Salpêtrière, Paris, France
| | - S Boutin
- Department of Infectious Diseases, Medical Microbiology and Hygiene, University Clinics, Heidelberg, Germany
| | - E Kuenzli
- Swiss Tropical and Public Health Institute, Department Medicine, Basel, Switzerland; University of Basel, Basel, Switzerland
| | - J Gascon
- ISGlobal, Barcelona Centre for International Health Research (CRESIB), Hospital Clínic - Universitat de Barcelona, Barcelona, Spain
| | - A Kantele
- Inflammation Centre, Division of Infectious Diseases, University of Helsinki and Helsinki University Hospital, HUS, Finland
| | - M P Grobusch
- Centre of Tropical Medicine and Travel Medicine, Department of Infectious Diseases, Academic Medical Centre, University of Amsterdam, Amsterdam, The Netherlands
| | - K Heeg
- Department of Infectious Diseases, Medical Microbiology and Hygiene, University Clinics, Heidelberg, Germany
| | - P Zanger
- Department of Infectious Diseases, Medical Microbiology and Hygiene, University Clinics, Heidelberg, Germany; Heidelberg Institute of Global Health, Unit of Epidemiology and Biostatistics, University Clinics, Heidelberg, Germany.
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Chan K, Boutin S, Hossie TJ, Krebs CJ, O'Donoghue M, Murray DL. Improving the assessment of predator functional responses by considering alternate prey and predator interactions. Ecology 2017; 98:1787-1796. [PMID: 28369822 DOI: 10.1002/ecy.1828] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/18/2016] [Revised: 02/22/2017] [Accepted: 03/03/2017] [Indexed: 11/11/2022]
Affiliation(s)
- K. Chan
- Department of Biology; Trent University; Peterborough Ontario K9J 7B8 Canada
| | - S. Boutin
- Department of Biological Sciences; University of Alberta; Edmonton Alberta T6G 2E9 Canada
| | - T. J. Hossie
- Department of Biology; Trent University; Peterborough Ontario K9J 7B8 Canada
| | - C. J. Krebs
- Department of Zoology; The University of British Columbia; Vancouver British Columbia V6T 1Z4 Canada
| | - M. O'Donoghue
- Department of Environment; Fish and Wildlife Branch; P.O. Box 310 Mayo Yukon Y0B 1M0 Canada
| | - D. L. Murray
- Department of Biology; Trent University; Peterborough Ontario K9J 7B8 Canada
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Boutin S, Stahl M, Graeber SY, Dittrich S, Mall M, Dalpke AH. Longitudinal analysis of cystic fibrosis of airways' microbiota. Pneumologie 2016. [DOI: 10.1055/s-0036-1584655] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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25
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Boutin S, Graeber SY, Stahl M, Dittrich S, Mall MA, Dalpke A. Comparison of airways' microbiota at different sampling sites in patients with cystic fibrosis. Pneumologie 2015. [DOI: 10.1055/s-0035-1556605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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26
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Boutin S, Stahl M, Graeber SY, Dittrich S, Mall MA, Dalpke A. Longitudinal dynamics of cystic fibrosis airways' microbiota during clinical stability and exacerbation. Pneumologie 2015. [DOI: 10.1055/s-0035-1556604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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27
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Lane JE, McAdam AG, Charmantier A, Humphries MM, Coltman DW, Fletcher Q, Gorrell JC, Boutin S. Post-weaning parental care increases fitness but is not heritable in North American red squirrels. J Evol Biol 2015; 28:1203-12. [DOI: 10.1111/jeb.12633] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2014] [Revised: 03/24/2015] [Accepted: 03/26/2015] [Indexed: 11/27/2022]
Affiliation(s)
- J. E. Lane
- Department of Biological Sciences; University of Alberta; Edmonton AB Canada
| | - A. G. McAdam
- Department of Integrative Biology; University of Guelph; Guelph ON Canada
| | - A. Charmantier
- Centre d'Ecologie Fonctionelle et Evolutive; Unité Mixte de Recherche 5175; Centre National de la Recherche Scientifique; Montpellier France
| | - M. M. Humphries
- Department of Natural Resource Sciences; McGill University; Ste-Anne-de-Bellevue QC Canada
| | - D. W. Coltman
- Department of Biological Sciences; University of Alberta; Edmonton AB Canada
| | - Q. Fletcher
- Département de biologie, chimie et géographie; Université du Québec à Rimouski; Rimouski QC Canada
| | - J. C. Gorrell
- Department of Biological Sciences; University of Alberta; Edmonton AB Canada
| | - S. Boutin
- Department of Biological Sciences; University of Alberta; Edmonton AB Canada
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28
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Hervieux D, Hebblewhite M, DeCesare N, Russell M, Smith K, Robertson S, Boutin S. Reply to the comment by Harron on “Widespread declines in woodland caribou ( Rangifer tarandus caribou) continue in Alberta”. CAN J ZOOL 2015. [DOI: 10.1139/cjz-2014-0321] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Estimation of demographic trends from vital rates provides a powerful means to estimate population trends in cryptic or difficult to study species such as woodland caribou (Rangifer tarandus caribou (Gmelin, 1788)). Using such methods, Hervieux et al. (2013; Can. J. Zool. 91(12): 872–882) recently showed 11 of 14 woodland caribou populations in Alberta were declining at ∼8%/year following up to 18 years of monitoring. Harron (2015; Can. J. Zool. 93(2): 149–150) critiques our original study, claiming that negative biases in our demographic monitoring exaggerate our conclusions of widespread caribou declines. Here, we systematically review each of Harron’s claims of bias, rejecting each of his claims upon careful review of the mechanisms by which his purported claims would manifest in our population trend estimation. Therefore, we conclude that Harron’s scientific critique was superficial and misleading. Delays in conservation actions raised by Harron’s critique risk diminishing opportunities to conserve and recover this federally and provincially protected species.
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Affiliation(s)
- D. Hervieux
- Operations Division (Fisheries and Wildlife), Alberta Environment and Sustainable Resource Development, Grande Prairie, AB T8V 6J4, Canada
| | - M. Hebblewhite
- Wildlife Biology Program, Department of Ecosystem and Conservation Sciences, College of Forestry and Conservation, University of Montana, Missoula, MT 59812, USA
| | - N.J. DeCesare
- Wildlife Biology Program, Department of Ecosystem and Conservation Sciences, College of Forestry and Conservation, University of Montana, Missoula, MT 59812, USA
| | - M. Russell
- Operations Division (Fisheries and Wildlife), Alberta Environment and Sustainable Resource Development, Grande Prairie, AB T8V 6J4, Canada
| | - K. Smith
- Operations Division (Fisheries and Wildlife), Alberta Environment and Sustainable Resource Development, Grande Prairie, AB T8V 6J4, Canada
| | - S. Robertson
- Operations Division (Fisheries and Wildlife), Alberta Environment and Sustainable Resource Development, Grande Prairie, AB T8V 6J4, Canada
| | - S. Boutin
- Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada
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29
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Taylor RW, Boutin S, Humphries MM, McAdam AG. Selection on female behaviour fluctuates with offspring environment. J Evol Biol 2014; 27:2308-21. [DOI: 10.1111/jeb.12495] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2013] [Accepted: 08/12/2014] [Indexed: 11/30/2022]
Affiliation(s)
- R. W. Taylor
- Department of Zoology; 203 Natural Sciences; Michigan State University; East Lansing MI USA
| | - S. Boutin
- Department of Biological Sciences; University of Alberta; Edmonton AB Canada
| | - M. M. Humphries
- Department of Natural Resource Sciences; Macdonald Campus; McGill University; Sainte-Anne-de-Bellevue QC Canada
| | - A. G. McAdam
- Department of Zoology; 203 Natural Sciences; Michigan State University; East Lansing MI USA
- Department of Integrative Biology; University of Guelph; Guelph ON Canada
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Servais L, Le Guiner C, Montus M, Cherel Y, Francois V, Thibaud J, Wary C, Matot B, Larche T, Guigand L, Dutilleul M, Goubin H, Deschamps J, Domenger C, Allais M, Le Duff J, Devaux M, Jaulin N, Guilbaud M, Adjali O, Latournerie V, Veron P, Boutin S, Leborgne C, Desgue D, Moullec S, Barnay-Toutain F, Riviere C, Delaunay N, Bonne G, Masurier C, Hogrel J, Carlier P, Moullier P, Voit T. G.P.92. Neuromuscul Disord 2014. [DOI: 10.1016/j.nmd.2014.06.106] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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31
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Sevellec M, Pavey SA, Boutin S, Filteau M, Derome N, Bernatchez L. Microbiome investigation in the ecological speciation context of lake whitefish (Coregonus clupeaformis
) using next-generation sequencing. J Evol Biol 2014; 27:1029-46. [DOI: 10.1111/jeb.12374] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2013] [Accepted: 03/16/2014] [Indexed: 12/21/2022]
Affiliation(s)
- M. Sevellec
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
| | - S. A. Pavey
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
| | - S. Boutin
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
| | - M. Filteau
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
| | - N. Derome
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
| | - L. Bernatchez
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
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32
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Dawe K, Bayne E, Boutin S. Influence of climate and human land use on the distribution of white-tailed deer (Odocoileus virginianus) in the western boreal forest. CAN J ZOOL 2014. [DOI: 10.1139/cjz-2013-0262] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Understanding the factors that drive species distributions is emerging as an important tool in wildlife management, under unprecedented changes in species ranges. While invasion ecologists have long studied the impact of human land use on species’ distributions, and models developed more recently to explain changes in species range boundaries have been largely parameterized by climate variables, few authors have considered climate and land-use factors together to explain species distribution. The purpose of this study was to test two main competing hypotheses involving human land use and climate effects on white-tailed deer (Odocoileus virginianus (Zimmermann, 1780)) distribution, which has expanded into the boreal ecosystem in recent decades. Using a species distribution modeling approach with data from boreal Alberta, we found that climate, as measured by an index of winter severity, was the most important individual factor determining current white-tailed deer distribution in boreal Alberta. Human land use (as measured by total land-use footprint) acted to substantially increase white-tailed deer presence but only in areas with more severe winter conditions. We use our findings to recommend where limiting or reclaiming the industrial footprint may be most beneficial to limiting white-tailed deer distribution.
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Affiliation(s)
- K.L. Dawe
- Department of Biological Sciences, CW405, Biological Sciences Building, University of Alberta, Edmonton, AB T6G 2E9, Canada
| | - E.M. Bayne
- Department of Biological Sciences, CW405, Biological Sciences Building, University of Alberta, Edmonton, AB T6G 2E9, Canada
| | - S. Boutin
- Department of Biological Sciences, CW405, Biological Sciences Building, University of Alberta, Edmonton, AB T6G 2E9, Canada
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33
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Hervieux D, Hebblewhite M, DeCesare N, Russell M, Smith K, Robertson S, Boutin S. Widespread declines in woodland caribou (Rangifer tarandus caribou) continue in Alberta. CAN J ZOOL 2013. [DOI: 10.1139/cjz-2013-0123] [Citation(s) in RCA: 94] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Nowhere across Canada is the continued persistence of woodland caribou (Rangifer tarandus caribou (Gmelin, 1788)) more uncertain than in Alberta due to widespread industrial development. A recent Government of Canada critical habitat review determined that habitat conditions within all Alberta boreal ecotype caribou ranges are unlikely or very unlikely to allow for self-sustaining caribou populations. This habitat-based assessment was based only indirectly on empirical population trends. Here, we estimated empirical population trend and growth rate (λ) for 13 of Alberta’s 16 remaining woodland caribou populations (plus one adjacent population from Saskatchewan) from 1994 to 2012 using demographic monitoring of adult female survival and calf recruitment. We captured and radio-collared a total of 1337 adult female caribou in 14 populations and estimated the mean annual adult female survival across all populations as 0.851. We conducted 158 late-winter calf recruitment surveys across the 14 populations classifying 20 872 caribou and estimated mean recruitment of 0.154 calves/cow (i.e., 0.077 female calves/cow). We then combined annual estimates of adult female survival and female calf recruitment within each population in a simple age-structured population model to estimate population trend. Annual population growth rate across caribou populations averaged 0.918, and was significantly declining, λ < 1.0, for 10 of the 14 caribou populations. Our results confirm that woodland caribou are declining rapidly (with a realized decline of approximately 50% every 8 years) across Alberta, and support conclusions from previous habitat-based assessments that the population viability of caribou is currently compromised, supporting development and implementation of recovery actions to reverse trends.
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Affiliation(s)
- D. Hervieux
- Operations Division (Fisheries and Wildlife), Alberta Environment and Sustainable Resource Development, Grande Prairie, AB T8V 6J4, Canada
| | - M. Hebblewhite
- Wildlife Biology Program, Department of Ecosystem and Conservation Sciences, College of Forestry and Conservation, University of Montana, Missoula, MT 59812, USA
| | - N.J. DeCesare
- Wildlife Biology Program, Department of Ecosystem and Conservation Sciences, College of Forestry and Conservation, University of Montana, Missoula, MT 59812, USA
| | - M. Russell
- Operations Division (Fisheries and Wildlife), Alberta Environment and Sustainable Resource Development, Grande Prairie, AB T8V 6J4, Canada
| | - K. Smith
- Operations Division (Fisheries and Wildlife), Alberta Environment and Sustainable Resource Development, Grande Prairie, AB T8V 6J4, Canada
| | - S. Robertson
- Operations Division (Fisheries and Wildlife), Alberta Environment and Sustainable Resource Development, Grande Prairie, AB T8V 6J4, Canada
| | - S. Boutin
- Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada
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Boutin S, McAdam AG, Humphries MM. Anticipatory reproduction in squirrels can succeed in the absence of extra food. New Zealand Journal of Zoology 2013. [DOI: 10.1080/03014223.2013.798337] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- S Boutin
- Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada
| | - AG McAdam
- University of Guelph, Guelph, Ontario, Canada
| | - MM Humphries
- Department of Natural Resource Sciences, McGill University, Ste-Anne-de-Bellevue, Québec, Canada
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Mayor SJ, Cahill JF, He F, Sólymos P, Boutin S. Regional boreal biodiversity peaks at intermediate human disturbance. Nat Commun 2013; 3:1142. [PMID: 23072810 DOI: 10.1038/ncomms2145] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2012] [Accepted: 09/20/2012] [Indexed: 11/09/2022] Open
Abstract
The worldwide biodiversity crisis has intensified the need to better understand how biodiversity and human disturbance are related. The 'intermediate disturbance hypothesis' suggests that disturbance regimes generate predictable non-linear patterns in species richness. Evidence often contradicts intermediate disturbance hypothesis at small scales, and is generally lacking at large regional scales. Here, we present the largest extent study of human impacts on boreal plant biodiversity to date. Disturbance extent ranged from 0 to 100% disturbed in vascular plant communities, varying from intact forest to agricultural fields, forestry cut blocks and oil sands. We show for the first time that across a broad region species richness peaked in communities with intermediate anthropogenic disturbance, as predicted by intermediate disturbance hypothesis, even when accounting for many environmental covariates. Intermediate disturbance hypothesis was consistently supported across trees, shrubs, forbs and grasses, with temporary and perpetual disturbances. However, only native species fit this pattern; exotic species richness increased linearly with disturbance.
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Affiliation(s)
- S J Mayor
- Department of Biological Science, University of Alberta, Edmonton, Alberta, Canada T6G 2E9.
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36
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Slichter DH, Vijay R, Weber SJ, Boutin S, Boissonneault M, Gambetta JM, Blais A, Siddiqi I. Measurement-induced qubit state mixing in circuit QED from up-converted dephasing noise. Phys Rev Lett 2012; 109:153601. [PMID: 23102305 DOI: 10.1103/physrevlett.109.153601] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2012] [Indexed: 06/01/2023]
Abstract
We observe measurement-induced qubit state mixing in a transmon qubit dispersively coupled to a planar readout cavity. Our results indicate that dephasing noise at the qubit-readout detuning frequency is up-converted by readout photons to cause spurious qubit state transitions, thus limiting the nondemolition character of the readout. Furthermore, we use the qubit transition rate as a tool to extract an equivalent flux noise spectral density at f~1 GHz and find agreement with values extrapolated from a 1/f(α) fit to the measured flux noise spectral density below 1 Hz.
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Affiliation(s)
- D H Slichter
- Quantum Nanoelectronics Laboratory, Department of Physics, University of California, Berkeley, California 94720, USA
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37
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Taylor RW, Boon AK, Dantzer B, Réale D, Humphries MM, Boutin S, Gorrell JC, Coltman DW, McAdam AG. Low heritabilities, but genetic and maternal correlations between red squirrel behaviours. J Evol Biol 2012; 25:614-24. [PMID: 22268892 DOI: 10.1111/j.1420-9101.2012.02456.x] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Consistent individual differences in behaviour, and behavioural correlations within and across contexts, are referred to as animal personalities. These patterns of variation have been identified in many animal taxa and are likely to have important ecological and evolutionary consequences. Despite their importance, genetic and environmental sources of variation in personalities have rarely been characterized in wild populations. We used a Bayesian animal model approach to estimate genetic parameters for aggression, activity and docility in North American red squirrels (Tamiasciurus hudsonicus). We found support for low heritabilities (0.08-0.12), and cohort effects (0.07-0.09), as well as low to moderate maternal effects (0.07-0.15) and permanent environmental effects (0.08-0.16). Finally, we found evidence of a substantial positive genetic correlation (0.68) and maternal effects correlation (0.58) between activity and aggression providing evidence of genetically based behavioural correlations in red squirrels. These results provide evidence for the presence of heritable variation in red squirrel behaviour, but also emphasize the role of other sources of variation, including maternal effects, in shaping patterns of variation and covariation in behavioural traits.
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Affiliation(s)
- Ryan W Taylor
- Department of Zoology, Michigan State University, East Lansing, MI 48824, USA.
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Abstract
Context
Changes in global climate and evidence of species’ responses to these changes have increased interest in relationships between climate variables and species demography and distributions. Although an important tool for many ecological questions, large-scale climate indices fail to provide the spatial resolution necessary to investigate drivers of change across small spatial scales. Climate variables that describe yearly climate variation at large spatial extents and small spatial grain are needed.
Aim
Here we develop a model for snow depth using snow water equivalent (SWE) data, which are readily available in a number of formats, to be included in a more general climate index. We use an existing winter severity index (WSI) for white-tailed deer to test the performance of the model.
Methods
We obtained data for 13 weather stations from north-western Canada, reporting both SWE and snow depth. We accumulated a snowpack from daily SWE of snowfall and then tested two methods for converting the SWE of the snowpack into the snow portion of the WSI. We then generalised the model for application to the northwest forest climate region.
Key results
Coefficients of determination (R2) relating the actual and predicted snow depth portion of the WSI ranged from 0.41 to 0.78, with only three stations being below 0.50. Coefficients of determination (R2) relating the actual and predicted WSI for the northwest climate region ranged from 0.58 to 0.88.
Conclusions
The SWE model predicts the snow portion of the WSI well for most stations and, when incorporated into the full WSI, provides a good measure of relative winter severity across space and time for most stations.
Implications
The method developed here could be applied elsewhere, where snow depth is an important factor in species ecology. The benefit of this approach is a comparatively simple method that maximises the use of widely available SWE data in place of snow-depth data.
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Festa-Bianchet M, Ray J, Boutin S, Côté S, Gunn A. Conservation of caribou (Rangifer tarandus) in Canada: an uncertain future1This review is part of the virtual symposium “Flagship Species – Flagship Problems” that deals with ecology, biodiversity and management issues, and climate impacts on species at risk and of Canadian importance, including the polar bear (Ursus maritimus), Atlantic cod (Gadus morhua), Piping Plover (Charadrius melodus), and caribou (Rangifer tarandus). CAN J ZOOL 2011. [DOI: 10.1139/z11-025] [Citation(s) in RCA: 256] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Caribou ( Rangifer tarandus (L., 1758)) play a central role in the ecology and culture of much of Canada, where they were once the most abundant cervid. Most populations are currently declining, and some face extirpation. In southern Canada, caribou range has retreated considerably over the past century. The ultimate reason for their decline is habitat alterations by industrial activities. The proximate causes are predation and, to a lesser extent, overharvest. The most southerly populations of “Mountain” caribou are at imminent risk of extirpation. Mountain caribou are threatened by similar industrial activities as Boreal caribou, and face increasing harassment from motorized winter recreational activities. Most populations of “Migratory Tundra” caribou are currently declining. Although these caribou fluctuate in abundance over decades, changing harvest technologies, climate change, increasing industrial development and human presence in the North raise doubts over whether recent declines will be followed by recoveries. The Peary caribou ( Rangifer tarandus pearyi J.A. Allen, 1902), a distinct subspecies endemic to Canada’s High Arctic, has suffered drastic declines caused by severe weather, hunting and predation. It faces an increasing threat from climate change. While some questions remain about the reasons for the decline of Migratory Tundra caribou, research has clearly identified several threats to the persistence of “Boreal”, Mountain, and Peary caribou. Scientific knowledge, however, has neither effectively influenced policies nor galvanized public opinion sufficiently to push governments into effective actions. The persistence of many caribou populations appears incompatible with the ongoing pace of industrial development.
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Affiliation(s)
- M. Festa-Bianchet
- Département de biologie et Centre d’études Nordiques, Université de Sherbrooke, Sherbrooke, QC J1K 2R1, Canada
| | - J.C. Ray
- Wildlife Conservation Society Canada, 720 Spadina Avenue, Suite 600, Toronto, ON M5S 2T9, Canada
| | - S. Boutin
- Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada
| | - S.D. Côté
- Département de biologie et Centre d’études Nordiques, Université Laval, Québec, QC G1V 0A6, Canada
| | - A. Gunn
- 368 Roland Road, Salt Spring Island, BC V8K 1V1, Canada
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Sheriff MJ, Speakman JR, Kuchel L, Boutin S, Humphries MM. The cold shoulder: free-ranging snowshoe hares maintain a low cost of living in cold climates. CAN J ZOOL 2009. [DOI: 10.1139/z09-087] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The hypothesis that cold air temperatures (Ta) constrain the metabolic diversity of high-latitude endotherms is based on the observation among birds and mammals that mean field metabolic rate (FMR) increases, whereas the variability of FMR decreases, from the warm tropics to the cold poles. However, there is a paucity of FMR measurements from above 60° latitude and below 0 °C. We measured the daily energy expenditure of a high-latitude population of free-ranging snowshoe hares ( Lepus americanus Erxleben, 1777) in Yukon, Canada, in winter (Ta-mean = –16.4 °C) and in autumn (Ta-mean = 0.5 °C). Doubly labelled water measures of FMR were approximately 20% lower in winter than in autumn, and were a similar, low multiple of resting metabolic rate in both seasons (2.04 and 1.94, respectively). The mass-corrected FMR of snowshoe hares in winter was only half the value predicted by extrapolating the relationship between FMR and Ta > 0 to –16.4 °C. These results contribute to an emerging pattern of a reversal in the relationship between FMR and Ta in free-ranging mammals from negative above 0 °C to positive below 0 °C. We refer to the positive, low Ta portion of this relationship as the cold shoulder, and suggest that it may reflect the general necessity for free-ranging mammals to use behavioural and (or) physiological means to conserve energy during long winters when cold conditions coincide with resource scarcity.
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Affiliation(s)
- Michael J. Sheriff
- Department of Zoology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- Centre for the Neurobiology of Stress, University of Toronto at Scarborough, Toronto, ON M1C 1A4, Canada
- School of Biological Sciences, University of Aberdeen, Aberdeen, Scotland AB24 2TZ, UK
- Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada
- Department of Natural Resource Sciences, Macdonald Campus, McGill University, Ste-Anne-de-Bellevue, QC H9X 3V9, Canada
| | - J. R. Speakman
- Department of Zoology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- Centre for the Neurobiology of Stress, University of Toronto at Scarborough, Toronto, ON M1C 1A4, Canada
- School of Biological Sciences, University of Aberdeen, Aberdeen, Scotland AB24 2TZ, UK
- Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada
- Department of Natural Resource Sciences, Macdonald Campus, McGill University, Ste-Anne-de-Bellevue, QC H9X 3V9, Canada
| | - L. Kuchel
- Department of Zoology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- Centre for the Neurobiology of Stress, University of Toronto at Scarborough, Toronto, ON M1C 1A4, Canada
- School of Biological Sciences, University of Aberdeen, Aberdeen, Scotland AB24 2TZ, UK
- Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada
- Department of Natural Resource Sciences, Macdonald Campus, McGill University, Ste-Anne-de-Bellevue, QC H9X 3V9, Canada
| | - S. Boutin
- Department of Zoology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- Centre for the Neurobiology of Stress, University of Toronto at Scarborough, Toronto, ON M1C 1A4, Canada
- School of Biological Sciences, University of Aberdeen, Aberdeen, Scotland AB24 2TZ, UK
- Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada
- Department of Natural Resource Sciences, Macdonald Campus, McGill University, Ste-Anne-de-Bellevue, QC H9X 3V9, Canada
| | - M. M. Humphries
- Department of Zoology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada
- Centre for the Neurobiology of Stress, University of Toronto at Scarborough, Toronto, ON M1C 1A4, Canada
- School of Biological Sciences, University of Aberdeen, Aberdeen, Scotland AB24 2TZ, UK
- Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada
- Department of Natural Resource Sciences, Macdonald Campus, McGill University, Ste-Anne-de-Bellevue, QC H9X 3V9, Canada
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41
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Masurier C, Boutin S, Veron P, Bernard J, Danos O, Davoust J. Enhanced Lentiviral Transduction of Monocyte-Derived Dendritic Cells in The Presence of Conditioned Medium from Dying Monocytes. Hum Gene Ther 2007; 18:161-70. [PMID: 17326725 DOI: 10.1089/hum.2006.106] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Lentiviral vectors (LVs) are attractive vehicles for the transduction of human dendritic cells (DCs) in order to mobilize their endogenous antigen presentation pathways. We analyzed here how to improve the efficiency of LV transduction, which we performed at the initial stages of the differentiation of purified monocytes into dendritic cells (Mo-DCs). Using LVs pseudotyped with the vesicular stomatitis virus envelope G glycoprotein (VSV-G), we found that a conditioned medium derived from dying monocytes (MCM) improved by 2- to 10- fold the proportion of transduced Mo-DCs. This enhanced transduction efficiency requires the presence of MCM during the initial stage of LV transduction and does not affect the phenotype and antigen presentation function of terminally differentiated Mo-DCs. Importantly, we found that MCM derived from a human acute monocytic leukemia cell line, THP-1, was equally effective. The MCM activity was heat stable (56 degrees C) and was present in the soluble fraction after high-speed centrifugation. Altogether our results show that a soluble factor present in dying monocyte cultures can replace advantageously facilitating agents such as Polybrene, to achieve high LV transductions levels. This protocol can be performed with autologous monocytes and is therefore applicable in clinical settings.
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Affiliation(s)
- C Masurier
- Laboratoire d'Immunologie, Généthon, CNRS UMR 8115, 91002 Evry Cedex, France.
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Veron P, Boutin S, Bernard J, Danos O, Davoust J, Masurier C. Efficient transduction of monocyte- and CD34+- derived Langerhans cells with lentiviral vectors in the absence of phenotypic and functional maturation. J Gene Med 2006; 8:951-61. [PMID: 16741998 DOI: 10.1002/jgm.923] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
BACKGROUND Gene delivery in dendritic cells (DC) has raised considerable interest to modulate DC functions and induce therapeutic immunity or tolerance in an antigen-specific fashion. Among immature DC, Langerhans cells (LC) are attractive candidates for antigen delivery using lentiviral vectors (LV). METHODS LC derived from monocytes (Mo-LC), or derived from CD34+ cells (CD34-LC) in the presence of cytokine cocktail, were transduced with LV expressing enhanced green fluorescent protein (E-GFP) under the control of the ubiquitous phosphoglycerate kinase (PGK) promoter at a multiplicity of infection of 18, at days 0 to 3 for Mo-LC, or at days 0 to 12 for CD34-LC. We assessed gene transfer levels from the percentage of E-GFP+ cells in the final cultures, and examined the morphology, immunophenotype, state of differentiation and function of transduced LC. RESULTS Day 0 transduction of monocytes or CD34+ progenitors before cytokine pre-activation and LC differentiation resulted in stable gene expression in 7.8% of Mo-LC and 24% of CD34-LC. Monocyte-derived DC (Mo-DC) differentiated in serum-free medium were also efficiently transduced up to 13.2%. Interestingly, Mo-LC cells committed towards LC phenotype were permissive for transduction up to day 3. Transduction levels of CD34-LC peaked at day 6 to 44% and decreased thereafter. LV transduction did not perturb viability, phenotype and function of E-GFP-expressing LC. CONCLUSIONS LC generated ex vivo can serve as vaccine vehicles in humans through efficient transduction by LV. These LC will be helpful to assess in vitro the immunogenicity of gene therapy vectors, from the characterization of their phenotypic and functional maturation.
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Affiliation(s)
- P Veron
- Laboratoire d'Immunologie, GENETHON, CNRS UMR 8115, 91002 Evry Cedex, France
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43
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Abstract
Despite their importance in evolutionary biology, heritability and the strength of natural selection have rarely been estimated in wild populations of iteroparous species or have usually been limited to one particular event during an organism's lifetime. Using an animal-model restricted maximum likelihood and phenotypic selection models, we estimated quantitative genetic parameters and the strength of lifetime selection on parturition date and litter size at birth in a natural population of North American red squirrels, Tamiasciurus hudsonicus. Litter size at birth and parturition date had low heritabilities (h2 = 0.15 and 0.16, respectively). We considered potential effects of temporal environmental covariances between phenotypes and fitness and of spatial environmental heterogeneity in estimates of selection. Selection favored early breeders and females that produced litter sizes close to the population average. Stabilizing selection on litter size at birth may occur because of a trade-off between number of offspring produced per litter and offspring survival or a trade-off between a female's fecundity and her future reproductive success and survival.
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Affiliation(s)
- D Réale
- Department of Biology, McGill University, 1205 Docteur Penfield Avenue, Montréal, Québec H3A 1B1, Canada.
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44
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Abstract
Sources of variation in growth in body mass were assessed in natural and experimental conditions of high and low food abundance using reciprocal cross-fostering techniques and long-term data (1987-2002) for a population of North American red squirrels (Tamiasciurus hudsonicus). Growth rates were significantly higher in naturally good and food supplemented conditions, than in poor conditions. Mother-offspring resemblance was higher in poor conditions as a result of large increases in both the direct genetic variance and direct-maternal genetic covariance and a smaller increase in the coefficient of maternal variation. Furthermore, the genetic correlation across environments was significantly less than one indicating that sources of heritable variation differed between the two environments. These results are consistent with the hypothesis that selection has eroded heritable variation for growth more in good conditions and indicate the potential for independent adaptation of growth rates in good and poor conditions.
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Affiliation(s)
- A G McAdam
- Department of Biological Sciences, University of Alberta, Edmonton, Canada.
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45
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Sinclair ARE, Krebs CJ, Fryxell JM, Turkington R, Boutin S, Boonstra R, Seccombe-Hett P, Lundberg P, Oksanen L. Testing hypotheses of trophic level interactions: a boreal forest ecosystem. OIKOS 2003. [DOI: 10.1034/j.1600-0706.2000.890213.x] [Citation(s) in RCA: 76] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Réale D, Berteaux D, McAdam AG, Boutin S. LIFETIME SELECTION ON HERITABLE LIFE-HISTORY TRAITS IN A NATURAL POPULATION OF RED SQUIRRELS. Evolution 2003. [DOI: 10.1554/02-346] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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47
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Abstract
The cis-acting packaging domain in adenovirus serotype 5 (Ad5) is a series of redundant, albeit not functionally equivalent, "A-repeats" made up of the consensus sequence 5'-TTTGN(8)CG-3'. A-repeats may bind trans-acting factors that direct packaging of the adenovirus genome into the preformed capsid. To try to understand this basic mechanism, we examined the packaging domain from a nonhuman adenovirus. We delimited the canine adenovirus type 2 (CAV-2) packaging domain to within 156 bp via a conditional mutation based on the Cre/loxP excision. Using an insertion, deletion, and substitution strategy, we generated packaging-defective CAV-2 vectors. Our results demonstrate that, like Ad5, CAV-2 cis-acting packaging sequences are located near the left inverted terminal repeat and are redundant, but not functionally equivalent. However, the bipartite motif found in Ad5 is present only once in CAV-2 and deletion of it caused only a minor variation in the packaging efficiency. We have identified at least four functional cis-acting packaging sequences in CAV-2. The CAV-2 vectors that we generated were not replication-defective in an E1-transcomplementing cell line and as heat stable as the parental vectors that did not contain mutations.
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Affiliation(s)
- C Soudais
- Généthon III and CNRS URA 1923, Evry, France
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48
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Soudais C, Boutin S, Hong SS, Chillon M, Danos O, Bergelson JM, Boulanger P, Kremer EJ. Canine adenovirus type 2 attachment and internalization: coxsackievirus-adenovirus receptor, alternative receptors, and an RGD-independent pathway. J Virol 2000; 74:10639-49. [PMID: 11044108 PMCID: PMC110938 DOI: 10.1128/jvi.74.22.10639-10649.2000] [Citation(s) in RCA: 98] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The best-characterized receptors for adenoviruses (Ads) are the coxsackievirus-Ad receptor (CAR) and integrins alpha(v)beta(5) and alpha(v)beta(3), which facilitate entry. The alpha(v) integrins recognize an Arg-Gly-Asp (RGD) motif found in some extracellular matrix proteins and in the penton base in most human Ads. Using a canine adenovirus type 2 (CAV-2) vector, we found that CHO cells that express CAR but not wild-type CHO cells are susceptible to CAV-2 transduction. Cells expressing alpha(M)beta(2) integrins or major histocompatibility complex class I (MHC-I) molecules but which do not express CAR were not transduced. Binding assays showed that CAV-2 attaches to a recombinant soluble form of CAR and that Ad type 5 (Ad5) fiber, penton base, and an anti-CAR antibody partially blocked attachment. Using fluorescently labeled CAV-2 particles, we found that in some cells nonpermissive for transduction, inhibition was at the point of internalization and not attachment. The transduction efficiency of CAV-2, which lacks an RGD motif, surprisingly mimicked that of Ad5 when tested in cells selectively expressing alpha(v)beta(5) and alpha(v)beta(3) integrins. Our results demonstrate that CAV-2 transduction is augmented by CAR and possibly by alpha(v)beta(5), though transduction can be CAR and alpha(v)beta(3/5) independent but is alpha(M)beta(2), MHC-I, and RGD independent, demonstrating a transduction mechanism which is distinct from that of Ad2/5.
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Affiliation(s)
- C Soudais
- Généthon III and CNRS URA 1923, Evry, CNRS UMR 5537, Lyon, France
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49
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Abstract
Many organisms acquire and defend resources outside the breeding season and this is thought to be for immediate survival and reproductive benefits. Female red squirrels (Tamiasciurus hudsonicus) acquire traditional food cache sites up to four months prior to the presence of any physiological or behavioural cues associated with mating or offspring dependency. They subsequently relinquish these resources to one of their offspring at independence (ten months later). We experimentally show that acquisition of these cache sites cannot be explained by conventional arguments such as enhanced survival of the parent or increased reproductive output. Instead this behaviour functions as a form of parental care.
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Affiliation(s)
- S Boutin
- Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada T6G 2E9.
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50
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Abstract
Preclinical studies have shown that gene transfer following readministration of viral vectors is often inefficient due to the presence of neutralizing antibodies. Vectors derived from ubiquitous human adenoviruses may have limited clinical use because preexisting humoral and cellular immunity is found in 90% of the population. Furthermore, risks associated with the use of human adenovirus vectors, such as the need to immunosuppress or tolerize patients to a potentially debilitating virus, are avoidable if efficient nonhuman adenovirus vectors are feasible. Plasmids containing recombinant canine adenovirus (CAV) vectors from which the E1 region had been deleted were generated and transfected into a CAV E1-transcomplementing cell line. Vector stocks, with titers greater than or equal to those obtained with human adenovirus vectors, were free of detectable levels of replication-competent CAV and had a low particle-to-transduction unit ratio. CAV vectors were replication defective in all cell lines tested, transduced human-derived cells at an efficiency similar to that of a comparable human adenovirus type 5 vector, and are amenable to in vivo use. Importantly, 49 of 50 serum samples from healthy individuals did not contain detectable levels of neutralizing CAV antibodies.
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Affiliation(s)
- E J Kremer
- Programme Thérapie Génique, Généthon III and CNRS URA 1923, 91002 Evry, France.
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