Diversity, Distribution, and Ecology of Fungi in the Seasonal Snow of Antarctica

We characterized the fungal community found in the winter seasonal snow of the Antarctic Peninsula. From the samples of snow, 234 fungal isolates were obtained and could be assigned to 51 taxa of 26 genera. Eleven yeast species displayed the highest densities; among them, Phenoliferia glacialis showed a broad distribution and was detected at all sites that were sampled. Fungi known to be opportunistic in humans were subjected to antifungal minimal inhibition concentration. Debaryomyces hansenii, Rhodotorula mucilaginosa, Penicillium chrysogenum, Penicillium sp. 3, and Penicillium sp. 4 displayed resistance against the antifungals benomyl and fluconazole. Among them, R. mucilaginosa isolates were able to grow at 37 °C. Our results show that the winter seasonal snow of the Antarctic Peninsula contains a diverse fungal community dominated by cosmopolitan ubiquitous fungal species previously found in tropical, temperate, and polar ecosystems. The high densities of these cosmopolitan fungi suggest that they could be present in the air that arrives at the Antarctic Peninsula by air masses from outside Antarctica. Additionally, we detected environmental fungal isolates that were resistant to agricultural and clinical antifungals and able to grow at 37 °C. Further studies will be needed to characterize the virulence potential of these fungi in humans and animals.

Cultivable fungi present in Antarctic soils: taxonomy, phylogeny, diversity, and bioprospecting of antiparasitic and herbicidal metabolites

Molecular biology techniques were used to identify 218 fungi from soil samples collected from four islands of Antarctica. These consisted of 22 taxa of 15 different genera belonging to the Zygomycota, Ascomycota, and Basidiomycota. Mortierella, Antarctomyces, Pseudogymnoascus, and Penicillium were the most frequently isolated genera and Penicillium tardochrysogenum, Penicillium verrucosus, Goffeauzyma gilvescens, and Mortierella sp. 2 the most abundant taxa. All fungal isolates were cultivated using solid-state fermentation to obtain their crude extracts. Pseudogymnoascus destructans, Mortierella parvispora, and Penicillium chrysogenum displayed antiparasitic activities, whilst extracts of P. destructans, Mortierella amoeboidea, Mortierella sp. 3, and P. tardochrysogenum showed herbicidal activities. Reported as pathogenic for bats, different isolates of P. destructans exhibited trypanocidal activities and herbicidal activity, and may be a source of bioactive molecules to be considered for chemotherapy against neglected tropical diseases. The abundant presence of P. destructans in soils of the four islands gives evidence supporting that soils in the Antarctic Peninsula constitute a natural source of strains of this genus, including some P. destructans strains that are phylogenetically close to those that infect bats in North America and Europe/Palearctic Asia.

Diversity and bioprospection of fungal community present in oligotrophic soil of continental Antarctica

We surveyed the diversity and capability of producing bioactive compounds from a cultivable fungal community isolated from oligotrophic soil of continental Antarctica. A total of 115 fungal isolates were obtained and identified in 11 taxa of Aspergillus, Debaryomyces, Cladosporium, Pseudogymnoascus, Penicillium and Hypocreales. The fungal community showed low diversity and richness, and high dominance indices. The extracts of Aspergillus sydowii, Penicillium allii-sativi, Penicillium brevicompactum, Penicillium chrysogenum and Penicillium rubens possess antiviral, antibacterial, antifungal, antitumoral, herbicidal and antiprotozoal activities. Bioactive extracts were examined using (1)H NMR spectroscopy and detected the presence of secondary metabolites with chemical shifts. Our results show that the fungi present in cold-oligotrophic soil from Antarctica included few dominant species, which may have important implications for understanding eukaryotic survival in cold-arid oligotrophic soils. We hypothesize that detailed further investigations may provide a greater understanding of the evolution of Antarctic fungi and their relationships with other organisms described in that region. Additionally, different wild pristine bioactive fungal isolates found in continental Antarctic soil may represent a unique source to discover prototype molecules for use in drug and biopesticide discovery studies.

Diversity patterns, ecology and biological activities of fungal communities associated with the endemic macroalgae across the Antarctic peninsula

We surveyed diversity patterns and engaged in bioprospecting for bioactive compounds of fungi associated with the endemic macroalgae, Monostroma hariotii and Pyropia endiviifolia, in Antarctica. A total of 239 fungal isolates were obtained, which were identified to represent 48 taxa and 18 genera using molecular methods. The fungal communities consisted of endemic, indigenous and cold-adapted cosmopolitan taxa, which displayed high diversity and richness, but low dominance indices. The extracts of endemic and cold-adapted fungi displayed biological activities and may represent sources of promising prototype molecules to develop drugs. Our results suggest that macroalgae along the marine Antarctic Peninsula provide additional niches where fungal taxa can survive and coexist with their host in the extreme conditions. We hypothesise that the dynamics of richness and dominance among endemic, indigenous and cold-adapted cosmopolitan fungal taxa might be used to understand and model the influence of climate change on the maritime Antarctic mycota.

Characterisation of pathogenic bacteria in a UASB-polishing pond system using molecular techniques

Molecular techniques have been commonly used to detect and quantify pathogenic bacteria in food, clinical and environmental samples, but in wastewater treatment plants few studies have been carried out. This work applied PCR with a specific set of primers to investigate pathogenic bacteria in a wastewater plant comprised of a UASB reactor followed by polishing ponds. In addition, in-situ hybridisation technique (FISH) was used to estimate the abundance of Escherichia coli in the system. According to the PCR results it was observed that Escherichia coli and Salmonella enterica subsp. enterica were not completely removed in the system, since they were detected either in the raw sewage or UASB and pond effluents. Shigella dysenteriae and Enterococcus spp. were detected in raw sewage and UASB, but not in the pond effluent. In contrast Staphylococcus aureus and Helicobacter pylori were not detected in any samples. The quantification of E. coli using FISH revealed values in the range of 10(7) cells/100 mL for raw sewage and 10(6) cells/100 mL for pond effluent, slightly higher than values obtained by traditional techniques. Finally the results show the applicability of PCR method for monitoring pathogenic bacteria in wastewater systems; however, more samples need to be analysed in order to certify the applicability of FISH to estimate pathogenic bacteria in WWT effluents.

Investigation of aerobic and anaerobic ammonium-oxidising bacteria presence in a small full-scale wastewater treatment system comprised by UASB reactor and three polishing ponds

This work applied PCR amplification method and Fluorescence in situ hybridisation (FISH) with primers and probes specific for the anammox organisms and aerobic ammonia-oxidising beta-Proteobacteria in order to detect these groups in different samples from a wastewater treatment system comprised by UASB reactor and three polishing (maturation) ponds in series. Seven primer pairs were used in order to detect Anammox bacteria. Positive results were obtained with three of them, suggesting that Anammox could be present in polishing pond sediments. However, Anammox bacteria were not detected by FISH, indicating that they were not present in sediment samples, or they could be present but below FISH detection limit. Aerobic ammonia- and nitrite-oxidising bacteria were verified in water column samples through Most Probable Number (MPN) analysis, but they were not detected in sediment samples by FISH. Ammonia removal efficiencies occurred systematically along the ponds (24, 32, and 34% for polishing pond 1, 2, and 3, respectively) but the major reaction responsible for this removal is still unclear. Some nitrification might have occurred in water samples because some nitrifying bacteria were present. Also Anammox reaction might have occurred because Anammox genes were detected in the sediments, but probably this reaction was too low to be noticed. It is important also to consider that some of the ammonia removal observed might be related to NH(3) stripping, associated with the pH increase resulting from the intensive photosynthetic activity in the ponds (mechanism under investigation). Therefore, it can be concluded that more than one mechanism (or reaction) might be involved in the ammonia removal in the polishing ponds investigated in this study.

Performance evaluation of a simple wastewater treatment system comprised by UASB reactor, shallow polishing ponds and coarse rock filter

The work investigates a small full-scale wastewater treatment system comprised by the following units in series: UASB reactor, three polishing ponds and one coarse rock filter. The overall performance of the system is analyzed based on three years of monitoring using physical-chemical and biological parameters. Good organic matter, suspended solids and ammonia removal is achieved, together with excellent coliform removal (5.70 log units). Mean effluent concentrations of the main parameters are: BOD: 39 mg/L; COD: 109 mg/L; SS = 41 mg/L; ammonia: 10 mg/L; E. coli: 540 MPN/100 mL, indicating compliance with many regulations for effluent discharge and reuse. Main algal classes found in the ponds and final effluent were chlorophyta and euglenophyta. The system is completely unmechanized and has a relatively small total hydraulic retention time (less than 13 days), compared with most natural treatment processes. No sludge removal from the ponds and filter has been necessary so far.

Thermal hygienization of excess anaerobic sludge: a possible self-sustained application of biogas produced in UASB reactors

The main current trends in final disposal of sludge from Wastewater Treatment Plants (WTP) include: safe use of nutrients and organic matter in agriculture, sludge disinfection and restricted use in landfill. As to sludge hygienization, helminth eggs have been used as a major parameter to determine the effectiveness of such process, and its inactivation can be reached by means of thermal treatment, under varying temperature and other conditions. In such context, the objective of this research was to determine how effectively biogas produced in UASB reactors could be used as a source of calorific energy for the thermal hygienization of excess anaerobic sludge, with Ascaris lumbricoides eggs being used as indicator microorganisms, and whether the system can operate on a self-sustained basis. The experiments were conducted in a pilot-scale plant comprising one UASB reactor, two biogas holders and one thermal reactor. The investigation proved to be of extreme importance to developing countries, since it leads to a simplified and fully self-sustainable solution for sludge hygienization, while making it possible to reuse such material for agricultural purposes. It should be also noted that using biogas from UASB reactors is more than sufficient to accomplish the thermal hygienization of all excess sludge produced by this system, when used for treating domestic sewage.

Inactivation of E. coli and helminth eggs in aerobic and anaerobic effluents using UV radiation

This paper evaluates the performance of a simplified bench-scale UV-photoreactor used to inactivate Escherchia coli and eggs of Ascaris lumbricoides. The photoreactor consisted of a tubular unit constructed with PVC tube, 100 mm diameter and 45 cm total height, with a low-pressure mercury lamp adapted in the centre of the tube. The reactor was tested to disinfect the effluent from a trickling filter and from an UASB reactor, both fed with domestic sewage. The results showed an excellent performance of the photoreactor, with very high E. coli inactivation efficiencies being observed for the aerobic effluent (in the range of 4 to 5 log-units, for doses varying from 50.7 to 13.6 mW x s x cm(-2)) and also for the effluent from the UASB reactor (usually above 4 log-units, for doses of 20.3 and 13.6 mW x s x cm(-2)). In relation to the inactivation of helminth eggs, it was observed that UV radiation significantly affected the development of eggs of Ascaris lumbricoides, with the better results being obtained for radiation times of 40 and 60 seconds (doses of 13.6 and 20.3 mW x s x cm(-2), respectively), when approximately 65% of the eggs remained in the stage of single cell and only 9 to 10% were able to fully develop to the stage of motile larva.