Predicting photosynthetic pathway from anatomy using machine learning

Plants with Crassulacean acid metabolism (CAM) have long been associated with a specialized anatomy, including succulence and thick photosynthetic tissues. Firm, quantitative boundaries between non-CAM and CAM plants have yet to be established - if they indeed exist. Using novel computer vision software to measure anatomy, we combined new measurements with published data across flowering plants. We then used machine learning and phylogenetic comparative methods to investigate relationships between CAM and anatomy. We found significant differences in photosynthetic tissue anatomy between plants with differing CAM phenotypes. Machine learning-based classification was over 95% accurate in differentiating CAM from non-CAM anatomy, and had over 70% recall of distinct CAM phenotypes. Phylogenetic least squares regression and threshold analyses revealed that CAM evolution was significantly correlated with increased mesophyll cell size, thicker leaves, and decreased intercellular airspace. Our findings suggest that machine learning may be used to aid the discovery of new CAM species and that the evolutionary trajectory from non-CAM to strong, obligate CAM requires continual anatomical specialization.

Low internal air space in plants with crassulacean acid metabolism may be an anatomical spandrel

Crassulacean acid metabolism (CAM) is a photosynthetic adaptation found in at least 38 plant families. Typically, the anatomy of CAM plants is characterized by large photosynthetic cells and a low percentage of leaf volume consisting of internal air space (% IAS). It has been suggested that reduced mesophyll conductance (gm) arising from low % IAS benefits CAM plants by preventing the movement of CO2 out of cells and ultimately minimizing leakage of CO2 from leaves into the atmosphere during day-time decarboxylation. Here, we propose that low % IAS does not provide any adaptive benefit to CAM plants, because stomatal closure during phase III of CAM will result in internal concentrations of CO2 becoming saturated, meaning low gm will not have any meaningful impact on the flux of gases within leaves. We suggest that low % IAS is more likely an indirect consequence of maximizing the cellular volume within a leaf, to provide space for the overnight storage of malic acid during the CAM cycle.

Leaf vein density correlates with crassulacean acid metabolism, but not hydraulic capacitance, in the genus Clusia

BACKGROUND AND AIMS

Many succulent species are characterized by the presence of Crassulacean acid metabolism (CAM) and/or elevated bulk hydraulic capacitance (CFT). Both CAM and elevated CFT substantially reduce the rate at which water moves through transpiring leaves. However, little is known about how these physiological adaptations are coordinated with leaf vascular architecture.

METHODS

The genus Clusia contains species spanning the entire C3-CAM continuum, and also is known to have >5-fold interspecific variation in CFT. We used this highly diverse genus to explore how interspecific variation in leaf vein density is coordinated with CAM and CFT.

KEY RESULTS

We found that constitutive CAM phenotypes were associated with lower vein length per leaf area (VLA) and vein termini density (VTD), compared to C3 or facultative CAM species. However, when vein densities were standardized by leaf thickness, this value was higher in CAM than C3 species, which is probably an adaptation to overcome apoplastic hydraulic resistance in deep chlorenchyma tissue. In contrast, CFT did not correlate with any xylem anatomical trait measured, suggesting CAM has a greater impact on leaf transpiration rates than CFT.

CONCLUSIONS

Our findings strongly suggest that CAM photosynthesis is coordinated with leaf vein densities. The link between CAM and vascular anatomy will be important to consider when attempting to bioengineer CAM into C3 crops.

The Agavoideae: an emergent model clade for CAM evolutionary biology

Crassulacean acid metabolism - or CAM photosynthesis - was described in the early to mid-20th century, and our understanding of this metabolic pathway was later expanded upon through detailed biochemical analyses of carbon balance. Soon after, scientists began to study the ecophysiological implications of CAM, and a large part of this early work was conducted in the genus Agave, in the subfamily Agavoideae of the family Asparagaceae. Today, the Agavoideae continues to be important for the study of CAM photosynthesis, from the ecophysiology of CAM species, to the evolution of the CAM phenotype and to the genomics underlying CAM traits. Here we review past and current work on CAM in the Agavoideae, in particular highlighting the work of Park Nobel in Agave, and focusing on the powerful comparative system the Agavoideae has become for studying the origins of CAM. We also highlight new genomics research and the potential for studying intraspecific variation within species of the Agavoideae, particularly species in the genus Yucca. The Agavoideae has served as an important model clade for CAM research for decades, and undoubtedly will continue to help push our understanding of CAM biology and evolution in the future.

The starch-deficient plastidic PHOSPHOGLUCOMUTASE mutant of the constitutive crassulacean acid metabolism (CAM) species Kalanchoë fedtschenkoi impacts diel regulation and timing of stomatal CO2 responsiveness

BACKGROUND AND AIMS

Crassulacean acid metabolism (CAM) is a specialized type of photosynthesis characterized by a diel pattern of stomatal opening at night and closure during the day, which increases water-use efficiency. Starch degradation is a key regulator of CAM, providing phosphoenolpyruvate as a substrate in the mesophyll for nocturnal assimilation of CO2. Growing recognition of a key role for starch degradation in C3 photosynthesis guard cells for mediating daytime stomatal opening presents the possibility that starch degradation might also impact CAM by regulating the provision of energy and osmolytes to increase guard cell turgor and drive stomatal opening at night. In this study, we tested the hypothesis that the timing of diel starch turnover in CAM guard cells has been reprogrammed during evolution to enable nocturnal stomatal opening and daytime closure.

METHODS

Biochemical and genetic characterization of wild-type and starch-deficient RNAi lines of Kalanchoë fedtschenkoi with reduced activity of plastidic phosphoglucomutase (PGM) constituted a preliminary approach for the understanding of starch metabolism and its implications for stomatal regulation in CAM plants.

KEY RESULTS

Starch deficiency reduced nocturnal net CO2 uptake but had negligible impact on nocturnal stomatal opening. In contrast, daytime stomatal closure was reduced in magnitude and duration in the starch-deficient rPGM RNAi lines, and their stomata were unable to remain closed in response to elevated concentrations of atmospheric CO2 administered during the day. Curtailed daytime stomatal closure was linked to higher soluble sugar contents in the epidermis and mesophyll.

CONCLUSIONS

Nocturnal stomatal opening is not reliant upon starch degradation, but starch biosynthesis is an important sink for carbohydrates, ensuring daytime stomatal closure in this CAM species.

Defining Mechanisms of C3 to CAM Photosynthesis Transition toward Enhancing Crop Stress Resilience

Global climate change and population growth are persistently posing threats to natural resources (e.g., freshwater) and agricultural production. Crassulacean acid metabolism (CAM) evolved from C3 photosynthesis as an adaptive form of photosynthesis in hot and arid regions. It features the nocturnal opening of stomata for CO2 assimilation, diurnal closure of stomata for water conservation, and high water-use efficiency. To cope with global climate challenges, the CAM mechanism has attracted renewed attention. Facultative CAM is a specialized form of CAM that normally employs C3 or C4 photosynthesis but can shift to CAM under stress conditions. It not only serves as a model for studying the molecular mechanisms underlying the CAM evolution, but also provides a plausible solution for creating stress-resilient crops with facultative CAM traits. This review mainly discusses the recent research effort in defining the C3 to CAM transition of facultative CAM plants, and highlights challenges and future directions in this important research area with great application potential.

How Central Carbon Metabolites of Mexican Mint (Plectranthus amboinicus) Plants Are Impacted under Different Watering Regimes

Plants are sessile, and their ability to reprogram their metabolism to adapt to fluctuations in soil water level is crucial but not clearly understood. A study was performed to determine alterations in intermediate metabolites involved in central carbon metabolism (CCM) following exposure of Mexican mint (Plectranthus amboinicus) to varying watering regimes. The water treatments were regular watering (RW), drought (DR), flooding (FL), and resumption of regular watering after flooding (DHFL) or after drought (RH). Leaf cluster formation and leaf greening were swift following the resumption of regular watering. A total of 68 key metabolites from the CCM routes were found to be significantly (p < 0.01) impacted by water stress. Calvin cycle metabolites in FL plants, glycolytic metabolites in DR plants, total tricarboxylic acid (TCA) cycle metabolites in DR and DHFL plants, and nucleotide biosynthetic molecules in FL and RH plants were significantly (p < 0.05) increased. Pentose phosphate pathway (PPP) metabolites were equally high in all the plants except DR plants. Total Calvin cycle metabolites had a significantly (p < 0.001) strong positive association with TCA cycle (r = 0.81) and PPP (r = 0.75) metabolites. Total PPP metabolites had a moderately positive association with total TCA cycle metabolites (r = 0.68; p < 0.01) and a negative correlation with total glycolytic metabolites (r = -0.70; p < 0.005). In conclusion, the metabolic alterations of Mexican mint plants under different watering regimes were revealed. Future studies will use transcriptomic and proteomic approaches to identify genes and proteins that regulate the CCM route.

Bioclimatic controls of CO2 assimilation near range limits of the CAM succulent tree Aloidendron dichotomum

Aloidendron dichotomum appears to be undergoing the early stages of a range shift in response to anthropogenic climate change in south-western Africa. High mortality has been recorded in warmer populations, while population expansions have been recorded in cooler poleward parts of its range. This study aimed to determine the key environmental controls on A. dichotomum photosynthesis in areas of population expansion, to inform the potential attribution of directional population expansion to anthropogenic warming. Nocturnal acid accumulation and CO2 assimilation were measured in individuals growing under a range of temperature and watering treatments in a greenhouse experiment. In addition, nocturnal acid accumulation and phosphoenolpyruvate carboxylase activity were quantified in two wild populations at the most southerly and south-easterly range extents. Multiple lines of evidence confirmed that A. dichotomum performs Crassulacean acid metabolism. Total nocturnal acid accumulation was highest at night-time temperatures of ~21.5 °C, regardless of soil water availability, and night-time CO2 assimilation rates increased with leaf temperature, suggesting a causal link to the cool southern range limit. Leaf acidity at the start of the dark period was highly predictive of nocturnal acid accumulation in all individuals, implicating light availability during the day as an important determinant of nocturnal acid accumulation.

Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants

Crassulacean acid metabolism (CAM) plants exhibit elevated drought and heat tolerance compared to C₃ and C₄ plants through an inverted pattern of day/night stomatal closure and opening for CO₂ assimilation. However, the molecular responses to water-deficit conditions remain unclear in obligate CAM species. In this study, we presented genome-wide transcription sequencing analysis using leaf samples of an obligate CAM species Kalanchoë fedtschenkoi under moderate and severe drought treatments at two-time points of dawn (2-h before the start of light period) and dusk (2-h before the dark period). Differentially expressed genes were identified in response to environmental drought stress and a whole genome wide co-expression network was created as well. We found that the expression of CAM-related genes was not regulated by drought stimuli in K. fedtschenkoi. Our comparative analysis revealed that CAM species (K. fedtschenkoi) and C₃ species (Arabidopsis thaliana, Populus deltoides 'WV94') share some common transcriptional changes in genes involved in multiple biological processes in response to drought stress, including ABA signaling and biosynthesis of secondary metabolites.

Evolution of an intermediate C4 photosynthesis in the non-foliar tissues of the Poaceae

Carbon concentrating mechanisms (CCMs) in plants are abaptive features that have evolved to sustain plant growth in unfavorable environments, especially at low atmospheric carbon levels and high temperatures. Uptake of CO₂ and its storage in the aerenchyma tissues of Lycopsids and diurnal acidity fluctuation in aquatic plants during the Palaeozoic era (ca. 300 Ma.) would represent the earliest evolution of a CCM. The CCM parts of the dark reactions of photosynthesis have evolved many times, while the light reactions are conserved across plant lineages. A C₄ type CCM, leaf C₄ photosynthesis is evolved in the PACMAD clade of the Poaceae family. The evolution of C₄ photosynthesis from C₃ photosynthesis was an abaptation. Photosynthesis in reproductive tissues of sorghum and maize (PACMAD clade) has been shown to be of a weaker C₄ type (high CO₂ compensation point, low carbon isotope discrimination, and lack of Rubisco compartmentalization, when compared to the normal C₄ types) than that in the leaves (normal C₄ type). However, this does not fit well with the character polarity concept from an evolutionary perspective. In a recent model proposed for CCM evolution, the development of a rudimentary CCM prior to the evolution of a more efficient CCM (features contrasting to a weaker C₄ type, leading to greater biomass production rate) has been suggested. An intermediate crassulacean acid metabolism (CAM) type of CCM (rudimentary) was reported in the genera, Brassia, Coryanthes, Eriopsis, Peristeria, of the orchids (well-known group of plants that display the CAM pathway). Similarly, we propose here the evolution of a rudimentary CCM (C₄-like type pathway) in the non-foliar tissues of the Poaceae, prior to the evolution of the C₄ pathway as identified in the leaves of the C₄ species of the PACMAD clade.

Cadmium-Tolerant Rhizospheric Bacteria of the C3/CAM Intermediate Semi-Halophytic Common Ice Plant (Mesembryanthemum crystallinum L.) Grown in Contaminated Soils

The common ice plant, Mesembryanthemum crystallinum L., has recently been found as a good candidate for phytoremediation of heavy-metal polluted soils. This semi-halophyte is a C₃/CAM (Crassulacean acid metabolism) intermediate plant capable of tolerating extreme levels of cadmium in the soil. The aim of the work was to obtain and characterize novel, Cd-tolerant microbial strains that populate the root zone of M. crystallinum performing different types of photosynthetic metabolism and growing in Cd-contaminated substrates. The plants exhibiting either C₃ or CAM photosynthesis were treated for 8 days with different CdCl₂ doses to obtain final Cd concentrations ranging from 0.82 to 818 mg⋅kg^-1 of soil d.w. The CAM phase was induced by highly saline conditions. After treatment, eighteen bacterial and three yeast strains were isolated from the rhizosphere and, after preliminary Cd-resistance in vitro test, five bacterial strains were selected and identified with a molecular proteomics technique. Two strains of the species Providencia rettgeri (W6 and W7) were obtained from the C₃ phase and three (one Paenibacillus glucanolyticus S7 and two Rhodococcus erythropolis strains: S4 and S10) from the CAM performing plants. The isolates were further tested for Cd-resistance (treatment with either 1 mM or 10 mM CdCl₂) and salinity tolerance (0.5 M NaCl) in model liquid cultures (incubation for 14 days). Providencia rettgeri W7 culture remained fully viable at 1 mM Cd, whereas Rh. erythropolis S4 and S10 together with P. glucanolyticus S7 were found to be resistant to 10 mM Cd in the presence of 0.5 M NaCl. It is suggested that the high tolerance of the common ice plant toward cadmium may result from the synergic action of the plant together with the Cd/salt-resistant strains occurring within rhizospheral microbiota. Moreover, the isolated bacteria appear as promising robust microorganisms for biotechnological applications in bio- and phytoremediation projects.

Modelling nonlinear dynamics of Crassulacean acid metabolism productivity and water use for global predictions

Crassulacean acid metabolism (CAM) crops are important agricultural commodities in water-limited environments across the globe, yet modelling of CAM productivity lacks the sophistication of widely used C3 and C4 crop models, in part due to the complex responses of the CAM cycle to environmental conditions. This work builds on recent advances in CAM modelling to provide a framework for estimating CAM biomass yield and water use efficiency from basic principles. These advances, which integrate the CAM circadian rhythm with established models of carbon fixation, stomatal conductance and the soil-plant-atmosphere continuum, are coupled to models of light attenuation, plant respiration and biomass partitioning. Resulting biomass yield and transpiration for Opuntia ficus-indica and Agave tequilana are validated against field data and compared with predictions of CAM productivity obtained using the empirically based environmental productivity index. By representing regulation of the circadian state as a nonlinear oscillator, the modelling approach captures the diurnal dynamics of CAM stomatal conductance, allowing the prediction of CAM transpiration and water use efficiency for the first time at the plot scale. This approach may improve estimates of CAM productivity under light-limiting conditions when compared with previous methods.

CAM plant expansion favored indirectly by asymmetric climate warming and increased rainfall variability

Recent observational evidence suggests that nighttime temperatures are increasing faster than daytime temperatures, while in some regions precipitation events are becoming less frequent and more intense. The combined ecological impacts of these climatic changes on crassulacean acid metabolism (CAM) plants and their interactions with other functional groups (i.e., grass communities) remain poorly understood. Here we developed a growth chamber experiment to investigate how two CAM-grass communities in desert ecosystems of the southwestern United States and northern Mexico respond to asymmetric warming and increasing rainfall variability. Grasses generally showed competitive advantages over CAM plants with increasing rainfall variability under ambient temperature conditions. In contrast, asymmetric warming caused mortality of both grass species (Bouteloua eriopoda and Bouteloua curtipendula) in both rainfall treatments due to enhanced drought stress. Grass mortality indirectly favored CAM plants even though the biomass of both CAM species Cylindropuntia imbricata and Opuntia phaeacantha significantly decreased. The stem's volume-to-surface ratio of C. imbricata was significantly higher in mixture than in monoculture under ambient temperature (both P < 0.0014); however, the difference became insignificant under asymmetric warming (both P > 0.1625), suggesting that warming weakens the negative effects of interspecific competition on CAM plant growth. Our findings suggest that while the increase in intra-annual rainfall variability enhances grass productivity, asymmetric warming may lead to grass mortality, thereby indirectly favoring the expansion of co-existing CAM plants. This study provides novel experimental evidence showing how the ongoing changes in global warming and rainfall variability affect CAM-grass growth and interactions in dryland ecosystems.

CRISPR/Cas9-mediated targeted mutagenesis for functional genomics research of crassulacean acid metabolism plants

Crassulacean acid metabolism (CAM) is an important photosynthetic pathway in diverse lineages of plants featuring high water-use efficiency and drought tolerance. A big challenge facing the CAM research community is to understand the function of the annotated genes in CAM plant genomes. Recently, a new genome editing technology using CRISPR/Cas9 has become a more precise and powerful tool than traditional approaches for functional genomics research in C3 and C4 plants. In this study, we explore the potential of CRISPR/Cas9 to characterize the function of CAM-related genes in the model CAM species Kalanchoë fedtschenkoi. We demonstrate that CRISPR/Cas9 is effective in creating biallelic indel mutagenesis to reveal previously unknown roles of blue light receptor phototropin 2 (KfePHOT2) in the CAM pathway. Knocking out KfePHOT2 reduced stomatal conductance and CO2 fixation in late afternoon and increased stomatal conductance and CO2 fixation during the night, indicating that blue light signaling plays an important role in the CAM pathway. Lastly, we provide a genome-wide guide RNA database targeting 45 183 protein-coding transcripts annotated in the K. fedtschenkoi genome.

CRISPR/Cas9-mediated targeted mutagenesis for functional genomics research of crassulacean acid metabolism plants

Crassulacean acid metabolism (CAM) is an important photosynthetic pathway in diverse lineages of plants featuring high water-use efficiency and drought tolerance. A big challenge facing the CAM research community is to understand the function of the annotated genes in CAM plant genomes. Recently, a new genome editing technology using CRISPR/Cas9 has become a more precise and powerful tool than traditional approaches for functional genomics research in C3 and C4 plants. In this study, we explore the potential of CRISPR/Cas9 to characterize the function of CAM-related genes in the model CAM species Kalanchoë fedtschenkoi. We demonstrate that CRISPR/Cas9 is effective in creating biallelic indel mutagenesis to reveal previously unknown roles of blue light receptor phototropin 2 (KfePHOT2) in the CAM pathway. Knocking out KfePHOT2 reduced stomatal conductance and CO2 fixation in late afternoon and increased stomatal conductance and CO2 fixation during the night, indicating that blue light signaling plays an important role in the CAM pathway. Lastly, we provide a genome-wide guide RNA database targeting 45 183 protein-coding transcripts annotated in the K. fedtschenkoi genome.

Operating at the very low end of the crassulacean acid metabolism spectrum: Sesuvium portulacastrum (Aizoaceae)

Demonstration of crassulacean acid metabolism (CAM) in species with low usage of this system relative to C3-photosynthetic CO2 assimilation can be challenging experimentally but provides crucial information on the early steps of CAM evolution. Here, weakly expressed CAM was detected in the well-known pantropical coastal, leaf-succulent herb Sesuvium portulacastrum, demonstrating that CAM is present in the Sesuvioideae, the only sub-family of the Aizoaceae in which it had not yet been shown conclusively. In outdoor plots in Panama, leaves and stems of S. portulacastrum consistently exhibited a small degree of nocturnal acidification which, in leaves, increased during the dry season. In potted plants, nocturnal acidification was mainly facultative, as levels of acidification increased in a reversible manner following the imposition of short-term water-stress. In drought-stressed plants, nocturnal net CO2 exchange approached the CO2-compensation point, consistent with low rates of CO2 dark fixation sufficient to eliminate respiratory carbon loss. Detection of low-level CAM in S. portulacastrum adds to the growing number of species that cannot be considered C3 plants sensu stricto, although they obtain CO2 principally via the C3 pathway. Knowledge about the presence/absence of low-level CAM is critical when assessing trajectories of CAM evolution in lineages. The genus Sesuvium is of particular interest because it also contains C4 species.

The Analysis of Leaf Traits of Eight Ottelia Populations and Their Potential Ecosystem Functions in Karst Freshwaters in China

Submerged macrophytes play a structuring role in the shallow freshwater ecosystem by increasing the heterogeneous state in freshwaters. The macrophytes in genus Ottelia were featured for their broad leaves, which might consequently produce specialized functions that differed from other submerged species. To explore the potential ecological role of Ottelia, a field investigation was conducted on leaf traits in eight populations of Ottelia ranging from the southwestern Yunnan-Guizhou plateau to the southern Hainan island in China covering a distance of >1,700 km. The eight populations included all the extant Ottelia species and varieties in China except the well-documented O. alismoides. Carbon-related traits [bicarbonate usage, photosynthetic characteristics, capability of Crassulacean acid metabolism (CAM)], pigment content and parameters of chlorophyll fluorescence, morphology and mass of the leaves were determined. The different populations showed distinct functional traits of mature leaves; O. acuminata var. songmingensis had the thickest and longest leaf with CaCO3 precipitation on the both sides of the leaf, and O. cordata showed putative CAM activity with the highest diel acidity changes 12.5 μequiv g-1 FW. Our results indicated an important role of Ottelia populations in carbon cycling as the dominant species in karst freshwaters in China.

The kinome of pineapple: catalog and insights into functions in crassulacean acid metabolism plants

BACKGROUND

Crassulacean acid metabolism (CAM) plants use water 20-80% more efficiently by shifting stomata opening and primary CO₂ uptake and fixation to the nighttime. Protein kinases (PKs) play pivotal roles in this biological process. However, few PKs have been functionally analyzed precisely due to their abundance and potential functional redundancy (caused by numerous gene duplications).

RESULTS

In this study, we systematically identified a total of 758 predicted PK genes in the genome of a CAM plant, pineapple (Ananas comosus). The pineapple kinome was classified into 20 groups and 116 families based on the kinase domain sequences. The RLK was the largest group, containing 480 members, and over half of them were predicted to locate at the plasma membrane. Both segmental and tandem duplications make important contributions to the expansion of pineapple kinome based on the synteny analysis. Ka/Ks ratios showed all of the duplication events were under purifying selection. The global expression analysis revealed that pineapple PKs exhibit different tissue-specific and diurnal expression patterns. Forty PK genes in a cluster performed higher expression levels in green leaf tip than in white leaf base, and fourteen of them had strong differential expression patterns between the photosynthetic green leaf tip and the non-photosynthetic white leaf base tissues.

CONCLUSIONS

Our findings provide insights into the evolution and biological function of pineapple PKs and a foundation for further functional analysis of PKs in CAM plants. The gene duplication, expression, and coexpression analysis helped us to rapidly identify the key candidates in pineapple kinome, which may play roles in the carbon fixation process in pineapple and help engineering CAM pathway into C3 crops for improved drought tolerance.

Perspectives on the basic and applied aspects of crassulacean acid metabolism (CAM) research

Due to public concerns about the decreasing supply of blue water and increasing heat and drought stress on plant growth caused by urbanization, increasing human population and climate change, interest in crassulacean acid metabolism (CAM), a specialized type of photosynthesis enhancing water-use efficiency (WUE) and drought tolerance, has increased markedly. Significant progress has been achieved in both basic and applied research in CAM plants since the beginning of this century. Here we provide a brief overview of the current status of CAM research, and discuss future needs and opportunities in a wide range of areas including systems biology, synthetic biology, and utilization of CAM crops for human benefit, with a focus on the following aspects: 1) application of genome-editing technology and high-throughput phenotyping to functional genomics research in model CAM species and genetic improvement of CAM crops, 2) challenges for multi-scale metabolic modeling of CAM systems, 3) opportunities and new strategies for CAM pathway engineering to enhance WUE and drought tolerance in C₃ (and C₄) photosynthesis crops, 4) potential of CAM species as resources for food, feed, natural products, pharmaceuticals and biofuels, and 5) development of CAM crops for ecological and aesthetic benefits.

Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave

Background

Crassulacean acid metabolism (CAM) enhances plant water-use efficiency through an inverse day/night pattern of stomatal closure/opening that facilitates nocturnal CO₂ uptake. CAM has evolved independently in over 35 plant lineages, accounting for ~ 6% of all higher plants. Agave species are highly heat- and drought-tolerant, and have been domesticated as model CAM crops for beverage, fiber, and biofuel production in semi-arid and arid regions. However, the genomic basis of evolutionary innovation of CAM in genus Agave is largely unknown.

Results

Using an approach that integrated genomics, gene co-expression networks, comparative genomics and protein structure analyses, we investigated the molecular evolution of CAM as exemplified in Agave. Comparative genomics analyses among C₃, C₄ and CAM species revealed that core metabolic components required for CAM have ancient genomic origins traceable to non-vascular plants while regulatory proteins required for diel re-programming of metabolism have a more recent origin shared among C₃, C₄ and CAM species. We showed that accelerated evolution of key functional domains in proteins responsible for primary metabolism and signaling, together with a diel re-programming of the transcription of genes involved in carbon fixation, carbohydrate processing, redox homeostasis, and circadian control is required for the evolution of CAM in Agave. Furthermore, we highlighted the potential candidates contributing to the adaptation of CAM functional modules.

Conclusions

This work provides evidence of adaptive evolution of CAM related pathways. We showed that the core metabolic components required for CAM are shared by non-vascular plants, but regulatory proteins involved in re-reprogramming of carbon fixation and metabolite transportation appeared more recently. We propose that the accelerated evolution of key proteins together with a diel re-programming of gene expression were required for CAM evolution from C₃ ancestors in Agave.

Electronic supplementary material

The online version of this article (10.1186/s12864-018-4964-7) contains supplementary material, which is available to authorized users.

Epiphytic bromeliads in a changing world: the effect of elevated CO2 and varying water supply on growth and nutrient relations

Global climate change is likely to impact all plant life. Vascular epiphytes represent a life form that may be affected more than any other by possible changes in precipitation leading to water shortage, but negative effects of drought may be mitigated through increasing levels of atmospheric CO₂ . We studied the response of three epiphytic Aechmea species to different CO₂ and watering levels in a full-factorial climate chamber study over 100 days. All species use crassulacean acid metabolism (CAM). Response variables were relative growth rate (RGR), nocturnal acidification and foliar nutrient levels (N, P, K, Mg). Both elevated CO₂ and increased water supply stimulated RGR, but the interaction of the two factors was not significant. Nocturnal acidification was not affected by these factors, indicating that the increase in growth in these CAM species was due to higher assimilation in the light. Mass-based foliar nutrient contents were consistently lower under elevated CO₂ , but most differences disappeared when expressed on an area basis. Compared to previous studies with epiphytes, in which doubling of CO₂ increased RGR, on average, by only 14%, these Aechmea species showed a relatively strong growth stimulation of up to +61%. Consistent with earlier findings with other bromeliads, elevated CO₂ did not mitigate the effect of water shortage.

The contribution of weak CAM to the photosynthetic metabolic activities of a bromeliad species under water deficit

The Crassulacean acid metabolism (CAM) can be a transitory strategy for saving water during unfavourable conditions, like a dry season. In some cases, CAM can also contribute to the maintenance of photosynthetic integrity, even if carbon gain and growth are impaired. CAM occurs in different intensities, being stronger or weaker depending on the degree of nocturnal malic acid accumulation. For example, Guzmania monostachia is an epiphytic tank bromeliad that shows an increase in its nocturnal organic acid accumulation and a variable CAM behaviour when exposed to water deficit. In this context, this study aimed at investigating whether the weak CAM displayed by this species may mitigate the harmful effects of water limitation on its photosynthetic activity. To this, bromeliads were submitted to well-watered and water deficit conditions. Guzmania monostachia plants under water deficiency conditions showed a reduction on atmospheric carbon assimilation without exhibiting changes in PSII integrity and carbohydrate production while showed an increase in nocturnal malic acid accumulation. Additionally, spots with high PSII efficiency in the leaf portion with a greater nocturnal malic acid accumulation were observed in plants exposed to water shortage conditions. These high-efficiency spots might be associated with a greater malate decarboxylation capacity. Also, the malic acid contributed to approximately 50% of the total carbon assimilated under water deficit. These results suggest that weak CAM may participate in photo-protection and it appears to meaningfully contribute to the overall carbon balance, being an important metabolic strategy to maintain plant fitness during water deficit periods.

Leaf carbohydrates influence transcriptional and post-transcriptional regulation of nocturnal carboxylation and starch degradation in the facultative CAM plant, Mesembryanthemum crystallinum

Nocturnal degradation of transitory starch is a limiting factor for the optimal function of crassulacean acid metabolism and must be coordinated with phosphoenolypyruvate carboxylase (PEPC)-mediated CO₂ uptake to optimise carbon gain over the diel cycle. The aim of this study was to test the hypothesis that nocturnal carboxylation is coordinated with starch degradation in CAM via a mechanism whereby the products of these pathways regulate diel transcript abundance and enzyme activities for both processes. To test this hypothesis, a starch and CAM-deficient mutant of Mesembryanthemum crystallinum was compared with wild type plants under well-watered and saline (CAM-inducing) conditions. Exposure to salinity increased the transcript abundance of genes required for nocturnal carboxylation, starch and sucrose degradation in both wild type and mutant, but the transcript abundance of several of these genes was not sustained over the dark period in the low-carbohydrate, CAM-deficient mutant. The diel pattern of transcript abundance for PEPC mirrored that of PEPC protein, as did the transcripts, protein, and activity of chloroplastic starch phosphorylase in both wild type and mutant, suggesting robust diel coordination of these metabolic processes. Activities of several amylase isoforms were low or lacking in the mutant, whilst the activity of a cytosolic isoform of starch phosphorylase was significantly elevated, indicating contrasting modes of metabolic regulation for the hydrolytic and phosphorylytic routes of starch degradation. Externally supplied sucrose resulted in an increase in nocturnal transcript abundance of genes required for nocturnal carboxylation and starch degradation. These results demonstrate that carbohydrates impact on transcriptional and post-transcriptional regulation of nocturnal carboxylation and starch degradation in CAM.

Optional use of CAM photosynthesis in two C4 species, Portulaca cyclophylla and Portulaca digyna

Low levels of crassulacean acid metabolism (CAM) are demonstrated in two species with C₄ photosynthesis, Portulaca cyclophylla and P. digyna. The expression of CAM in P. cyclophylla and P. digyna is facultative, i.e. optional. Well-watered plants did not accumulate acid at night and exhibited gas-exchange patterns consistent with C₄ photosynthesis. CAM-type nocturnal acidification was reversible in that it was induced following drought and lost when droughted plants were rewatered. In P. cyclophylla, droughting was accompanied by a small but discernible net uptake of CO₂ during the dark, whereas in P. digyna, net CO₂ exchange at night approached the CO₂ compensation point but did not transition beyond it. This report brings the number of known C₄ species with a capacity for expressing CAM to six. All are species of Portulaca. The observation of CAM in P. cyclophylla and P. digyna is the first for species in the opposite-leaved (OL) Portulacelloid-anatomy lineage of Portulaca and for the Australian clade therein. The other four species are within the alternate-leaved (AL) lineage, in the Atriploid-anatomy Oleracea and the Pilosoid-anatomy Pilosa clades. Studies of the evolutionary origins of C₄ and CAM in Portulaca will benefit from a more wide-range survey of CAM across its species, particularly in the C₃-C₄ intermediate-containing Cryptopetala clade.

Effects of competition on induction of crassulacean acid metabolism in a facultative CAM plant

Abiotic drivers of environmental stress have been found to induce CAM expression (nocturnal carboxylation) in facultative CAM species such as Mesembryanthemum crystallinum. The role played by biotic factors such as competition with non-CAM species in affecting CAM expression, however, remains largely understudied. This research investigated the effects of salt and water conditions on the competition between M. crystallinum and the C₃ grass Bromus mollis with which it is found to coexist in California's coastal grasslands. We also investigated the extent to which CAM expression in M. crystallinum was affected by the intensity of the competition with B. mollis. We found that M. crystallinum had a competitive advantage over B. mollis in drought and saline conditions, while B. mollis exerted strong competitive effects on M. crystallinum in access to light and soil nutrients in high water conditions. This strong competitive effect even outweighed the favorable effects of salt or water additions in increasing the biomass and productivity of M. crystallinum in mixture. Regardless of salt conditions, M. crystallinum did not switch to CAM photosynthesis in response to this strong competitive effect from B. mollis. Disturbance (i.e., grass cutting) reduced the competitive pressure by B. mollis and allowed for CAM expression in M. crystallinum when it was grown mixed with B. mollis. We suggest that moderate competition with other functional groups can enhance CAM expression in M. crystallinum, thereby affecting its plasticity and ability to cope with biological stress.

Drought stress memory in the photosynthetic mechanisms of an invasive CAM species, Aptenia cordifolia

Plants are known for their high capacity to acclimatise to fluctuating environmental conditions. A wide range of environmental conditions can lead to suboptimal physiological efficiency. However, recent studies have shown that plants can withstand repeated periods of stress. To find out how they do it, we studied photosynthetic adjustments to repeated water stress in Aptenia cordifolia: a facultative, invasive CAM species. Plants were subjected to three cycles of water deficit, and photosynthetic parameters and chloroplast antioxidants were quantified to gain an understanding of the mechanisms by which they cope with repeated stress periods. Significant modification of the photosystems' antenna and reaction centres was observed in plants subjected to previous water stress cycles, and this led to higher PSII efficiency than in plants challenged with drought for the first time. These findings underline the biological significance of stress memory and show how plants can adjust their photosynthetic apparatus to fluctuating environmental conditions and thus optimise photosynthesis and photoprotection under drought conditions.

Gas exchange and leaf anatomy of a C3-CAM hybrid, Yucca gloriosa (Asparagaceae)

While the majority of plants use the typical C3 carbon metabolic pathway, ~6% of angiosperms have adapted to carbon limitation as a result of water stress by employing a modified form of photosynthesis known as Crassulacean acid metabolism (CAM). CAM plants concentrate carbon in the cells by temporally separating atmospheric carbon acquisition from fixation into carbohydrates. CAM has been studied for decades, but the evolutionary progression from C3 to CAM remains obscure. In order to better understand the morphological and physiological characteristics associated with CAM photosynthesis, phenotypic variation was assessed in Yucca aloifolia, a CAM species, Yucca filamentosa, a C3 species, and Yucca gloriosa, a hybrid species derived from these two yuccas exhibiting intermediate C3-CAM characteristics. Gas exchange, titratable leaf acidity, and leaf anatomical traits of all three species were assayed in a common garden under well-watered and drought-stressed conditions. Yucca gloriosa showed intermediate phenotypes for nearly all traits measured, including the ability to acquire carbon at night. Using the variation found among individuals of all three species, correlations between traits were assessed to better understand how leaf anatomy and CAM physiology are related. Yucca gloriosa may be constrained by a number of traits which prevent it from using CAM to as high a degree as Y. aloifolia. The intermediate nature of Y. gloriosa makes it a promising system in which to study the evolution of CAM.

Single cell-type comparative metabolomics of epidermal bladder cells from the halophyte Mesembryanthemum crystallinum

One of the remarkable adaptive features of the halophyte Mesembryanthemum crystallinum are the specialized modified trichomes called epidermal bladder cells (EBC) which cover the leaves, stems, and peduncle of the plant. They are present from an early developmental stage but upon salt stress rapidly expand due to the accumulation of water and sodium. This particular plant feature makes it an attractive system for single cell type studies, with recent proteomics and transcriptomics studies of the EBC establishing that these cells are metabolically active and have roles other than sodium sequestration. To continue our investigation into the function of these unusual cells we carried out a comprehensive global analysis of the metabolites present in the EBC extract by gas chromatography Time-of-Flight mass spectrometry (GC-TOF) and identified 194 known and 722 total molecular features. Statistical analysis of the metabolic changes between control and salt-treated samples identified 352 significantly differing metabolites (268 after correction for FDR). Principal components analysis provided an unbiased evaluation of the data variance structure. Biochemical pathway enrichment analysis suggested significant perturbations in 13 biochemical pathways as defined in KEGG. More than 50% of the metabolites that show significant changes in the EBC, can be classified as compatible solutes and include sugars, sugar alcohols, protein and non-protein amino acids, and organic acids, highlighting the need to maintain osmotic homeostasis to balance the accumulation of Na(+) and Cl(-) ions. Overall, the comparison of metabolic changes in salt treated relative to control samples suggests large alterations in M. crystallinum epidermal bladder cells.

Multiple isoforms of phosphoenolpyruvate carboxylase in the Orchidaceae (subtribe Oncidiinae): implications for the evolution of crassulacean acid metabolism

Phosphoenolpyruvate carboxylase (PEPC) catalyses the initial fixation of atmospheric CO2 into oxaloacetate and subsequently malate. Nocturnal accumulation of malic acid within the vacuole of photosynthetic cells is a typical feature of plants that perform crassulacean acid metabolism (CAM). PEPC is a ubiquitous plant enzyme encoded by a small gene family, and each member encodes an isoform with specialized function. CAM-specific PEPC isoforms probably evolved from ancestral non-photosynthetic isoforms by gene duplication events and subsequent acquisition of transcriptional control elements that mediate increased leaf-specific or photosynthetic-tissue-specific mRNA expression. To understand the patterns of functional diversification related to the expression of CAM, ppc gene families and photosynthetic patterns were characterized in 11 closely related orchid species from the subtribe Oncidiinae with a range of photosynthetic pathways from C3 photosynthesis (Oncidium cheirophorum, Oncidium maduroi, Rossioglossum krameri, and Oncidium sotoanum) to weak CAM (Oncidium panamense, Oncidium sphacelatum, Gomesa flexuosa and Rossioglossum insleayi) and strong CAM (Rossioglossum ampliatum, Trichocentrum nanum, and Trichocentrum carthagenense). Phylogenetic analysis revealed the existence of two main ppc lineages in flowering plants, two main ppc lineages within the eudicots, and three ppc lineages within the Orchidaceae. Our results indicate that ppc gene family expansion within the Orchidaceae is likely to be the result of gene duplication events followed by adaptive sequence divergence. CAM-associated PEPC isoforms in the Orchidaceae probably evolved from several independent origins.

Reconstructing the δ(18) O of atmospheric water vapour via the CAM epiphyte Tillandsia usneoides: seasonal controls on δ(18) O in the field and large-scale reconstruction of δ(18) Oa

Using both oxygen isotope ratios of leaf water (δ(18) OL ) and cellulose (δ(18) OC ) of Tillandsia usneoides in situ, this paper examined how short- and long-term responses to environmental variation and model parameterization affected the reconstruction of the atmospheric water vapour (δ(18) Oa ). During sample-intensive field campaigns, predictions of δ(18) OL matched observations well using a non-steady-state model, but the model required data-rich parameterization. Predictions from the more easily parameterized maximum enrichment model (δ(18) OL-M ) matched observed δ(18) OL and observed δ(18) Oa when leaf water turnover was less than 3.5 d. Using the δ(18) OL-M model and weekly samples of δ(18) OL across two growing seasons in Florida, USA, reconstructed δ(18) Oa was -12.6 ± 0.3‰. This is compared with δ(18) Oa of -12.4 ± 0.2‰ resolved from the growing-season-weighted δ(18) OC . Both of these values were similar to δ(18) Oa in equilibrium with precipitation, -12.9‰. δ(18) Oa was also reconstructed through a large-scale transect with δ(18) OL and the growing-season-integrated δ(18) OC across the southeastern United States. There was considerable large-scale variation, but there was regional, weather-induced coherence in δ(18) Oa when using δ(18) OL . The reconstruction of δ(18) Oa with δ(18) OC generally supported the assumption of δ(18) Oa being in equilibrium with precipitation δ(18) O (δ(18) Oppt ), but the pool of δ(18) Oppt with which δ(18) Oa was in equilibrium - growing season versus annual δ(18) Oppt - changed with latitude.

How succulent leaves of Aizoaceae avoid mesophyll conductance limitations of photosynthesis and survive drought

In several taxa, increasing leaf succulence has been associated with decreasing mesophyll conductance (g M) and an increasing dependence on Crassulacean acid metabolism (CAM). However, in succulent Aizoaceae, the photosynthetic tissues are adjacent to the leaf surfaces with an internal achlorophyllous hydrenchyma. It was hypothesized that this arrangement increases g M, obviating a strong dependence on CAM, while the hydrenchyma stores water and nutrients, both of which would only be sporadically available in highly episodic environments. These predictions were tested with species from the Aizoaceae with a 5-fold variation in leaf succulence. It was shown that g M values, derived from the response of photosynthesis to intercellular CO2 concentration (A:C i), were independent of succulence, and that foliar photosynthate δ(13)C values were typical of C3, but not CAM photosynthesis. Under water stress, the degree of leaf succulence was positively correlated with an increasing ability to buffer photosynthetic capacity over several hours and to maintain light reaction integrity over several days. This was associated with decreased rates of water loss, rather than tolerance of lower leaf water contents. Additionally, the hydrenchyma contained ~26% of the leaf nitrogen content, possibly providing a nutrient reservoir. Thus the intermittent use of C3 photosynthesis interspersed with periods of no positive carbon assimilation is an alternative strategy to CAM for succulent taxa (Crassulaceae and Aizoaceae) which occur sympatrically in the Cape Floristic Region of South Africa.

Interactive effects of photon fluence rates and drought on CAM-cycling in Delosperma tradescantioides (Mesembryanthemaceae)

The ability of photosynthesis and CAM to acclimate to low (220 µmol m^-2 s^-1 ; LL) and relatively high (550 µmol m^-2 s^-1 ; HL) photosynthetic photon flux densities (PPFD) was investigated in the CAM-cycling species Delosperma tradescantioides by means of CO₂ gas exchange and chlorophyll fluorescence analysis. Furthermore, the influence of short-term drought on malic acid accumulation and the activity of photosystem II (PSII) was studied to assess the possible interactions between drought and the prevailing PPFD in this species. HL plants showed features of sun versus shade acclimation relative to LL plants. Nocturnal malic acid accumulation (Δ-malate) and leaf water content also tended to be higher in HL plants. Irrespective of the PPFD during growth, the weak Δ-malate doubled within 3 days of drought. Despite largely restricted CO₂ uptake, photosynthetic activity as estimated from fluorescence analysis declined only ca 5%. After 7 days of drought, when plants showed CAM-idling and Δ-malate had decreased again, potential carbon assimilation was still ca 84% of that in well-watered plants and remained relatively constant throughout the day. Decarboxylation of malic acid accounted for ca 23% of potential assimilation assuming total oxidation of a maximum portion of this organic acid. Drought did not affect predawn maximum photochemical efficiency (F_v /F_m ). Nonphotochemical quenching (qN) increased (24%) in response to desiccation and resulted in a more or less constant reduction state of PSII. This increase in qN resulted mainly from the change in its fast-relaxing component (qNF), while the slow component (qNS) was significant only at or above saturating PPFD in both HL and LL plants. The photon response characteristics of PSII, which differed between LL and HL plants, were unaffected by short-term drought. Photon harvesting and photon use were always adjusted to guarantee a low reduction state of PSII. Results suggest that in both LL and HL plants CAM-cycling may help to stabilize photosynthesis but to a large extent by other means than simply providing internally derived CO₂ .

The occurrence of crassulacean acid metabolism among vascular epiphytes from Central Panama

The occurrence of crassulacean acid metabolism (CAM) among the epiphyte flora of the lowland forest on Barro Colorado Island (BCJ), Panama, was investigated. A total of 116 species was included, i.e. about 2/3 of the known epiphyte taxa. As judged from the carbon isotope ratios and the absence of Kranz anatomy, indications of CAM were found in 29 species of three families, Orchidaceae (20), Bromeliaceae (7), and Cactaceae (2). We estimate that about 25% of the epiphyte flora of BCI are CAM plants. CAM was most prevalent in exposed sites, but even in the understorey two epiphyte species engage in CAM.

Water stress in the epiphytic orchid, Dimerandra emarginata (G. Meyer) Hoehne

The epiphytic orchid, Dimerandra emarginata, occurs in habitats characterized by high light intensities and very variable water supply. Long-term observations of the water status indicate that this species experienced at least moderate water stress over most of the year. Well-watered, it showed high rates of net CO₂ uptake (A, 7 μmol m^-2 s^-1), high transpiration rates (E, 1.4 mmol m^-2 s^-1), and little nocturnal acidification. Drought induced crassulacean acid metabolism activity and resulted in a strong decline of both A and E. The same conditions also led to chronic photoinhibition as indicated by a predawn ratio of variable to maximum fluorescence (F_v/F_m) of 0.6 after 9 days of drought. Diurnal changes in fluorescence characteristics were much more pronounced. Midday ratios of dark adapted F_v/F_m were as low as 0.35, but recovered in the afternoon and were probably mostly due to non-photochemical quenching of photosynthesis. Measured water losses of leaves and stems were compared to plant water content (PWC). In large plants, about 32% of PWC was transpired on a single day under well-watered conditions. Model calculations indicate that transpiration per unit leaf area should be strongly dependent upon plant size in this species. Comparisons of calculated daily water loss, PWC and the length of drought periods suggest that D. emarginata can only survive a dry season by drawing on the water reserves of older stems and by an efficient uptake of the occasional rain.

Fluctuations in nitrate reductase activity, and nitrate and organic nitrogen concentrations of succulent plants under different nitrogen and water regimes

The CAM (Crassulacean acid metabolism) succulent species Kalanchoe daigremontiana, K. tubiflora and Crassula argentea, and the succulent C₃ species Peperomia obtusifolia, were cultivated in pure culture in open-air conditions under two different regimes of nitrogen and water supply. At specified intervals during the course of vegetative growth, biomass, nitrate reductase activity (NRA), nitrate concentration, and organic nitrogen concentration of whole plants were measured. After 100 days of cultivation the leaf conductance of Crassula and Peperomia was measured at intervals for the duration of a day. Behaviour of all four species was strongly influenced by the cultivation regime. This was apparent in terms of productivity and variable flucturations in NRA, nitrate concentration, and organic nitrogen concentration during the vegetative period. Increase in biomass was mostly connected with a decrease in all other investigated parameters, especially under conditions of water and/or nitrogen deficiency. The typical reaction of the CAM species Crassula to limited netrogen but adequate soil water was to reduce leaf conductance during light, whereas the C₃ plant Peperomia increased conductance in comparison with plants having a nitrogen suppy. The NRA of all plant species was reduced by both soil nitrate deficiency and drought. The succulent plant species, which are specially adapted to drought, neither took up nor used nitrate when water was limited. This was particularly the case for the CAM species, but less so for the C₃ Peperomia, which showed very high concentrations of nitrate and organic nitrogen, but low NRA and biomass gain. A formula was derived to express the nitrogen use efficiency (NUE) of the species, i.e. the ability of a plant to use nitrogen over a specific period of growth. NUE was shown to increase with age for the crassulacean species but to decrease for the C₃ Peperomia. Furthermore, NUE varied with the different nutrient levels in a species-specific manner, with high values for NUE not necessarily coupled to high productivity, and with NUE of the C₃ species generally higher than that of CAM species.

Comparative ecophysiology of five species of Sedum (Crassulaceae) under well-watered and drought-stressed conditions

Gas exchange patterns, diurnal malic acid fluctuations, and stable carbon isotope ratios of five species of Sedum were investigated to assess the ecophysiological characteristics of three different photosynthetic pathways under well-watered and drought-stressed conditions. All five species have succulent leaves and stems and were examined under identical environmental conditions. When well-watered, Sedum integrifolium (Raf.) Nels. and S. ternatum Michx. displayed C₃ photosynthesis, S. telephioides Michx. and S. nuttallianum Raf. exhibited CAM-cycling, and S. wrightii A. Gray showed CAM. When grown under a less frequent watering regime, S. integrifolium and S. ternatum exhibited CAM-cycling, whereas S. telephioides and S. nuttallianum displayed CAM-cycling simultaneously with low-level CAM. Sedum wrightii retained its CAM mode of photosynthesis. In general, leaf δ¹³C values reflected these variations in photosynthetic pathways. While all values of water-use efficiency (WUE) were greater than those reported for most C₃ and C₄ species, no correlation of malic acid accumulation in the CAM and CAM-cycling (including low-level CAM) species with increased WUE was found. Sedum wrightii (CAM) had the highest WUE value at night, yet its 24-h WUE was not different from S. ternatum when the latter was in the C₃ mode. Thus, relative water-use efficiencies of these species of Sedum were not predictable based on photosynthetic pathways alone.

Achievable productivities of certain CAM plants: basis for high values compared with C3 and C4 plants

CAM species, which taxonomically are at least five times more numerous than C₄ species, often grow-slowly, as is the case for various short-statured cacti and many epiphytes in several families, However, slow growth is not a necessary corollary of the CAM photosynthetic pathway, as can be appreciated by considering the energetics of CO₂ fixation. For every CO₂ fixed photosynthetically, C₃ plants require 3 ATP and 2 NADPH, whereas the extra enzymatic reactions and compartmentation complexity for C₄ plants require 4 or 5 ATP and 2 NADPH, and CAM plants require 5.5-6.5 ATP and 2 NADPH. Photorespiration in C₈ plants can release some of the CO₂ , fixed and also has an energetic-cost, whereas photorespiration is much less in C₄ and CAM plants. Therefore, CAM plants can perform net CO₂ fixation 15% more efficiently than C₃ , plants, although 10% less efficiently than C₄ plants. Using a simple model that assumes 8 photons per CO₂ fixed and a processing time per excitation of 5 ms, a maximum instantaneous rate for net CO₂ , uptake of 55 μmol m^-2 s^-1 is predicted. Measured maximal rates average 48μmol m^-2 s^-1 for leaves of six C₃ species with the highest rates and 64 μmol m^-2 s^-1 for six such C₄ species; CAM plants take up CO₂ mainly at night, which is not directly related to the instantaneous rate of photon absorption. Net CO₂ uptake integrated over 24 h, which is more pertinent to productivity than are instantaneous CO₂ uptake rates, is similar for the three pathways, although the higher water-use efficiency of CAM plants can be an advantage during drought. Canopy architecture is crucial for the distribution of the photosynthetic photon flux density (PPFD) over the shoot, which determines net CO₂ uptake per unit ground area and hence determines productivity. Maximal productivity for idealized canopies under optimal conditions is predicted to be about 100 Mg d. wt ha^-1 yr^-1 (1 Mg = 1 tonne), whereas actual values of environmental factors in the field approximately halve this prediction. The influence of environmental factors on net CO₂ uptake can be quantified using an environmental productivity index (EPI), which predicts the fractional limitation on net CO₂ uptake and is the product of a water index, a temperature index, and a PPFD index (nutrient effects can also be included). Using EPI with a ray-tracing technique to determine the PPFD index and taking into account respiration and carbon incorporated structurally, maximal productivity of CAM plants is predicted to occur at leaf or stem area indices of 4-5. In experiments designed using such shoot area indices, annual above-ground dry-weight productivities averaging 43 Mg ha^-1 yr^-1 have recently been observed for certain agaves and plutyopuntias. In comparison, the measured average annual productivity of the most productive plants is 49 Mg ha^-1 yr^-1 for six agronomic C₄ species, 35 Mg ha^-1 yr^-1 for sis agronomic C₃ species, and 39 Mg ha^-1 yr^-1 for six C₃ tree species. Thus, CAM plants are capable of similar high productivities, which can become especially advantageous in regions of substantial water stress. Recognition of the high potential productivity of certain CAM species under optimal environmental conditions, exceeding that of most C₃ species, may increase the cultivation of such CAM plants in various areas in the future. CONTENTS Summary 183 I. Introduction 184 II. Biochemistry of C₃ , C₄ , and CAM plants 185 III. CO₂ uptake rates 188 IV. Canopy architecture and light absorption 193 V. Measured biomass productivity 198 VI. Conclusions 200 Acknowledgement 202 References 202.

Crassulacean acid metabolism in selected terrestrial succulents in southeastern Jamaica, including two species in the Commelinaceae

Using determinations of overnigh changes in tissue titratable acidity and of tissue stable carbon isotope ratios, 10 species of terrestrial succulents were investigatedin situ in southeastern Jamaica for the presence of Crassulacean acid metabolism (CAM). Eight of the 10 species exhibited CAM (sensu lato), confirming past reports of CAM inClusia flava (Clusiaceae),Bryophyllum pinnatum (Crassulaceae),Euphorbia tirucalli (Euphorbiaceae), andPedilanthus tithymaloides (Euphorbiaceae) and extending the number of species with CAM in two genera previously known to contain CAM species (Agave sobolifera [Agavaceae] andSansevieria metalllica [Liliaceae]). Stems of bothE. tirucalli andP. tithymaloides exhibited CAM while the leaves of both species were intermediate with regard to photosynthetic pathway. The lack of CAM acid fluctuations inTalinum paniculatum (Portulacaceae) was surprising given past findings with all other species investigated in this genus. Shoots ofPilea microphylla (Urticaceae) were C₃ yet were remarkable in their extremely high pH. Both species require further investigation. Nocturnal acid accumulations indicative of CAM were found inTripogandra multiflora andCallisia fragrans, both members of the Commelinaceae. This represents the first report of CAM (probably "CAM-cycling") in this family.

Photosynthetic acclimation in a terrestrial CAM bromeliad, Bromelia humilis Jacq

Photosynthetic acclimation of a terrestrial CAM bromeliad -Bromelia humilis Jacq. to irradiance and nitrogen supply during growth was investigated under controlled conditions. Considerable acclimation to shade was realized through an increase in total chlorophyll, accessory pigments, an increase in chloroplast size and appressed to non-appressed thylakoid membrane ratio, and a reduction in chlorophyll a/b ratio. A relatively high apparent photon yield in shade was associated with a low light-compensation point and low dark-respiration rate. Light saturation of integrated dark CO₂ uptake occurred at a relatively low total daily photosynthetic photon flux density (PPFD) and was not influenced by growth PPFD level. Maximum photosynthetic capacity expressed per unit chlorophyll and nitrogen use efficiency were significantly higher in high-PPFD-grown plants. In addition, apparent photon yield was only slightly reduced in high-PPFD-grown plants with nitrogen, while maximum photosynthetic rate remained the same indicating radiationless dissipation of excess light. Very high levels of recycling of respiratory carbon were observed under nitrogen deficiency in plants grown in both high and low PPFD. The extensive photosynthetic acclimation of B. humilis is discussed in terms of contrasting exposure and limitations of its natural environment.

Ecophysiology of xerophytic and halophytic vegetation of a coastal alluvial plain in northern Venezuela: III. Bromelia humilis Jacq., a terrestrial CAM bromeliad

The terrestrial CAM plant Bromelia humilis was examined in the salinas of the Ciénega el Ostional, on the north coast of Venezuela, in the rainy and dry seasons. Three colour forms were distinguished; yellow (in full sun), green exposed (also in sun) and green shaded (beneath woodland). Plant size decreased with increasing irradiance. An examination was made of the three phenotypes in terms of CO₂ exchange (J_co2 ), dawn-dusk changes in titratable acidity (ΔH⁺ ) and malate and citrate levels, osmotic pressure, xylem tension, sugar and amino acids levels, nitrogen and ion concentrations and ambient temperature fluorescence. All phenotypes exhibited lowered J_co2 and ΔH⁺ in the dry as compared to the rainy season. Citrate, as well as malate, showed dawn-dusk fluctuations. Soluble sugars were the major source of carbon skeletons for nocturnal organic acid production. The dawn-dusk changes in osmotic pressure were negligible. Yellow plants performed poorly in contrast to shaded plants in both seasons. The former showed higher dawn-dusk changes of citrate levels and contained much less nitrogen than shaded plants. Nocturnal recycling of respiratory CO₂ was more important in yellow plants and, in the dry season, reached 87%. These differences were reflected in the overall productivity, shaded plants showing increases in size whereas yellow plants utilized energy mainly for leaf replacement. Water availability and nitrogen supply appear to be the overriding factors determining higher productivity and CO₂ assimilation in partially shaded plants as compared with plants in full sun.

TANSLEY REVIEW No 1.: VARIATION IN PHOTOSYNTHETIC ACID METABOLISM IN VASCULAR PLANTS: CAM AND RELATED PHENOMENA

The term, photosynthetic acid metabolism (PAM), encompasses processes which involve four-carbon (C₄ ) acids as carbon-carrying intermediates between the carboxylations catalysed by phosphoenolpyruvate (PEP) carboxylase and ribulose biphosphate (RuBP) carboxylase. These carboxylations may be separated either spatially, as in C₄ photosynthesis which is not covered here, or temporally. Separation in time is referred to as diel PAM (DPAM) and the variations on this particular theme are the subject of this review. DPAM includes stomatal and astomatal types. The former types, usually described as crassulacean acid metabolism (CAM), are referred to here as stomatal CAM (SCAM). Astomatal PAM includes both aquatic and terrestrial forms; aquatic acid metabolism (AAM) and terrestrial astomatal acid metabolism (TAAM). Physiological, biochemical, structural, ecological and evolutionary aspects of these mechanisms of acquisition of carbon dioxide are reviewed. CONTENTS Summary 3 I. General Introduction to Photosynthetic Acid Metabolism (PAM) 4 II. Stomatal Crassulacean (Diel Photosynthetic) Acid Metabolism (SCAM) 5 III. Astomatal Photosynthetic Acid Metabolism 13 IV. Idling 18 V. Structural Variation in Plants Exhibiting Diel PAM (DPAM) 18 VI. The Mechanism of the Switch between C₃ Photosynthesis and DPAM 19 VII. The Cost of DPAM 19 VIII. The Evolution of DPAM 20 IX. Concluding Comment 22 Acknowledgements 22 References 22.