Demography and threats to population growth of Cirsium pitcheri, a threatened dune plant, in Wisconsin

Multi-year and multi-site demographic data for rare plants allow researchers to observe threats and project population growth rates and thus long-term persistence of the species, generating knowledge, which allows for effective conservation planning. Demographic studies across more than a decade are extremely rare but allow for the effects of threats to be observed and assessed within the context of interannual environmental variation. We collected demographic data on the Threatened plant Cirsium pitcheri in two sites from 2011-2022. These sites were chosen because one exhibited the presence of non-native seed predators while the other did not, and we hypothesized that we would see declines and potentially extinction of the population threatened by predation. Over the course of our study, we observed additional threats, such as human trampling and high lake levels, which led to significant erosion, sand burial, and storm damage to plants. We find high interannual variation in vital rates and population growth rates for both populations, which mask the overall effects of predation. We observed dramatic declines in plant survivorship and population growth rates in both sites in the years with high lake levels. We conclude that high lake levels, which are expected to become more frequent with climate change, pose a significant threat to all near-shore populations of C. pitcheri.

Spatial and temporal trends of chlorinated epoxides in the atmosphere near the North American Great Lakes

Dieldrin, heptachlor epoxide, and oxychlordane are highly chlorinated, persistent, bicyclic epoxides that are widely present in the environment. Given the long-standing restrictions on the production and use of these compounds, it is appropriate to wonder if their environmental levels have decreased over time, and if so, how fast. The Integrated Atmospheric Deposition Network (IADN) provides this information by measuring the concentrations of these compounds in the atmosphere at six sites near the Great Lakes once every 12 days. During the period 1990-2021 (inclusive), a total of 4125 samples have been collected. The median concentrations at the six sites are significantly different from one another. The concentrations of all three compounds at Chicago (population: 3,900,000) are significantly higher than those at most other sites, and those at Eagle Harbor (population: 1330) are significantly lower than those at most other sites. This concentration trend reflects the use of these compounds as termiticides and insecticides in cities as opposed to their use in agriculture. Multivariate statistical analyses of the spatially- and time-resolved data indicate that the atmospheric concentrations of these compounds are decreasing by a factor of two every 14 ± 5 years. Although the atmospheric levels of these three highly chlorinated epoxides are decreasing slowly, it is clear that they are environmentally persistent. It is also clear that our earlier reported halving times (1-10 years) for dieldrin were overly optimistic. To determine reliable long term temporal trends, it is essential to have long term concentration measurements.

Distinct variations in fluorescent DOM components along a trophic gradient in the lower Fox River-Green Bay as characterized using one-sample PARAFAC approach

Variations in molecular weight distributions of dissolved organic matter (DOM) and PARAFAC-derived fluorescent components were investigated along a transect in the seasonally hypereutrophic lower Fox River-Green Bay using the one-sample PARAFAC approach coupling flow field-flow fractionation for size-separation with fluorescence excitation-emission matrix (EEM) and PARAFAC analysis. Concentrations of dissolved organic carbon and nitrogen, chromophoric-DOM, specific UV absorbance at 254 nm, and humification index all decreased monotonically from river to open bay, showing a strong river-dominated DOM source and a dynamic change in DOM quality along the river-lake transect. The relative abundance of colloidal DOM (>1 kDa) derived from ultrafiltration exhibited minimal variation, averaging 71 ± 4 % of the bulk DOM, across the entire estuarine transect although the colloidal concentration decreased in general. Using the one-sample EEM-PARAFAC approach, the identified major fluorescent components were distinct between stations along the river-estuary-open bay continuum, with four components in river/upper-estuary but three components in open bay waters. Among the four common fluorescent components (C475, C410, C320 and C290), the most abundant and refractory humic-like component, C475, behaved conservatively and its relative abundance (%ΣFmax) remained fairly constant (50 ± 4 %) along the transect, while the semi-labile humic-like component, C410, consistently decreased from river to estuary and eventually vanished in open Green Bay. In contrast, the two autochthonous protein-like components (C320 and C290) increased from river to open bay along the trophic gradient. The new results presented here provide an improved understanding of the diverse and fluctuating characteristics in DOM composition, lability, and estuarine mixing behavior across the river-lake interface and demonstrate the efficacy of the one-sample PARAFAC approach.

The Conservation Genetics of Iris lacustris (Dwarf Lake Iris), a Great Lakes Endemic

Iris lacustris, a northern Great Lakes endemic, is a rare species known from 165 occurrences across Lakes Michigan and Huron in the United States and Canada. Due to multiple factors, including habitat loss, lack of seed dispersal, patterns of reproduction, and forest succession, the species is threatened. Early population genetic studies using isozymes and allozymes recovered no to limited genetic variation within the species. To better explore genetic variation across the geographic range of I. lacustris and to identify units for conservation, we used tunable Genotyping-by-Sequencing (tGBS) with 171 individuals across 24 populations from Michigan and Wisconsin, and because the species is polyploid, we filtered the single nucleotide polymorphism (SNP) matrices using polyRAD to recognize diploid and tetraploid loci. Based on multiple population genetic approaches, we resolved three to four population clusters that are geographically structured across the range of the species. The species migrated from west to east across its geographic range, and minimal genetic exchange has occurred among populations. Four units for conservation are recognized, but nine adaptive units were identified, providing evidence for local adaptation across the geographic range of the species. Population genetic analyses with all, diploid, and tetraploid loci recovered similar results, which suggests that methods may be robust to variation in ploidy level.

Aqueous Geochemical Controls on the Sestonic Microbial Community in Lakes Michigan and Superior

Despite being the largest freshwater lake system in the world, relatively little is known about the sestonic microbial community structure in the Laurentian Great Lakes. The goal of this research was to better understand this ecosystem using high-throughput sequencing of microbial communities as a function of water depth at six locations in the westernmost Great Lakes of Superior and Michigan. The water column was characterized by gradients in temperature, dissolved oxygen (DO), pH, and other physicochemical parameters with depth. Mean nitrate concentrations were 32 μmol/L, with only slight variation within and between the lakes, and with depth. Mean available phosphorus was 0.07 μmol/L, resulting in relatively large N:P ratios (97:1) indicative of P limitation. Abundances of the phyla Actinobacteria, Bacteroidetes, Cyanobacteria, Thaumarchaeota, and Verrucomicrobia differed significantly among the Lakes. Candidatus Nitrosopumilus was present in greater abundance in Lake Superior compared to Lake Michigan, suggesting the importance of ammonia-oxidating archaea in water column N cycling in Lake Superior. The Shannon diversity index was negatively correlated with pH, temperature, and salinity, and positively correlated with DO, latitude, and N₂ saturation. Results of this study suggest that DO, pH, temperature, and salinity were major drivers shaping the community composition in the Great Lakes.

Impacts of Environmental and Engineered Processes on the PFAS Fingerprint of Fluorotelomer-Based AFFF

Forensic analysis can potentially be used to determine per- and polyfluoroalkyl substance (PFAS) sources at contaminated sites. However, fluorotelomer aqueous film-forming foam (AFFF) sources are difficult to identify because the polyfluorinated active ingredients do not have authentic standards and because the parent compounds can undergo transformation and differential transport, resulting in alteration of the PFAS distribution or fingerprint. In this study, we investigate changes in the PFAS fingerprint of fluorotelomer-derived AFFF due to environmental and engineered processes, including groundwater transport, surface water flow, and land application of contaminated biosolids. Fingerprint analysis supplemented by quantification of precursors and identification of suspected active ingredients shows a clear correlation between a fluorotelomer AFFF manufacturer and surface water of nearby Lake Michigan, demonstrating contamination (>100 ng/L PFOA) of the lake due to migration of an AFFF-impacted groundwater plume. In contrast, extensive processing during wastewater treatment and environmental transport results in large changes to the AFFF fingerprint near agricultural fields where contaminated biosolids were spread. At biosolids-impacted sites, the presence of active ingredients confirms contamination by fluorotelomer AFFF. While sediments can retain longer-chain PFAS, this study demonstrates that aqueous samples are most relevant for PFAS fingerprinting in complex sites, particularly where shorter-chain compounds have been used.

Modelling the transport of sloughed cladophora in the nearshore zone of Lake Michigan

The invasion of dreissenid mussels has profoundly altered benthic physical environments and whole-lake nutrient cycling in the Great Lakes over the past several decades. The resurgence of the filamentous green alga Cladophora appears to be one of the consequences of this invasion. Sloughed Cladophora deteriorates water quality, fouls recreational beaches, and may contribute to outbreaks of avian botulism, which have been especially severe in the Sleeping Bear Dunes National Lakeshore (SLBE) region of Lake Michigan. To help determine the fate of sloughed Cladophora, a Lagrangian particle trajectory model was developed to track the transport of Cladophora fragments in the nearshore zone based upon a physical transport-mixing model. The model results demonstrate that the primary deposition sites of sloughed Cladophora within the SLBE region are mid-depth sites not far away from their initial growth area. Because of high algae production in the nearshore waters and limited exchange between the inner and outer bay, the shoreline beach of Platte Bay appears to be particularly vulnerable to fouling, with overall three times as many accumulated particles as those along the Sleeping Bear Bay and Good Harbor Bay. The results of this model may be used to guide regional environmental management initiatives and provide insights into the mechanisms responsible for avian botulism outbreaks. This model may also inform the development of whole-lake ecosystem models that account for nearshore-offshore interactions.

Halophilic bacteria in a Lake Michigan drainage basin as potential biological indicators of chloride-impacted freshwaters

There are few biological indicators for freshwater systems subjected to high chloride levels. Freshwater systems receive many forms of chloride such as road salts (e.g., NaCl, CaCl₂, MgCl₂), fertilizers (e.g., KCl), and year-round water softener pollution. The goal our study was to investigate Halomonadaceae populations as prospective biological indicators of chloride-impacted freshwaters. The bacterial family Halomonadaceae are halophiles that generally require the presence of salt to survive, which make them an attractive candidate in determining chloride impaired areas. Field sediment surveys assessed how salt tolerant and halophilic bacteria abundance corresponded to chloride and conductivity measurements. Colony forming unit (CFU) counts on modified M9 6% NaCl plates (w/v) at urbanized sites compared to the rural sites had highest counts during winter and spring when chloride concentrations were also highest. Select isolates identified as Halomonadaceae through 16S rRNA sequencing were kept as active cultures to determine the NaCl concentration and temperature preference that resulted in the isolates optimal growth. Isolates tested under 5 °C (cold) grew optimally in 2 % NaCl (w/v), whereas under 18 °C (warm), isolates showed optimal growth at 6 % NaCl. The majority of isolates had maximum growth in the warmer temperature, however, select isolates grew better in the cold temperature. Culture-independent methods were used and identified Halomonadaceae were widespread and permeant members of the microbial community in a Lake Michigan drainage basin. Quantitative polymerase chain reaction (qPCR) targeting Halomonadaceae genera demonstrated that abundance varied by site, but overall were present throughout the year. However, community sequencing revealed there were a large relative proportion of specific Halomonadaceae populations present in winter versus summer. Methods targeting salt tolerant bacteria and specific members of Halomonadaceae appears to be a promising approach to assess chloride-impacted areas to better understand the long-term ecological impacts as we continue to salinize freshwater resources.

Drowning incidents and conditions due to hidden flash rips in Lake Michigan

Flash rips are episodic bursts of water jetting offshore, which can lead to drowning incidents by sweeping swimmers offshore without warning, thus posing a hidden and unrecognized danger to beachgoers. This study reveals hazards of flash rips by investigating a series of drowning incidents along coasts of Lake Michigan during a series of storm events on July 18-21, 2019. Occurrences and causes of flash rips were depicted through webcam image observations, storm features of atmospheric disturbances, hydrodynamic circumstances of wind waves and meteorologically induced water level fluctuations, and model-reconstructed nearshore circulations. Results shows that flash rips were generated during or after storms through nearshore processes of storm-induced wind waves and meteorologically induced water level fluctuations. With small wind waves, low water level fluctuations, and a timing delay of rip occurrences relative to the causative convective storms, flash rips pose a hidden hazard to unaware swimmers. Historical observations for incidents in Lake Michigan between 2002 and 2019 further show that dry conditions or fair weathers and a calm water signature at the beach can likely generate unexpected hidden flash rips, resulting in the highest drowning risks. There is an urgent need for communication, education, and prediction/forecast of hidden flash rips to the Laurentian Great Lakes and worldwide coastal communities.

A Hemimysis-driven novel ecosystem at a modified rubble-mound breakwater: An Engineering With Nature® Demonstration Project

The US Army Corps of Engineers (USACE) repairs aging breakwater structures as part of routine maintenance to maintain safe navigation in Great Lakes commercial ports. A USACE repair to an existing breakwater structure in Milwaukee Harbor (WI) implementing Engineering With Nature (EWN) principles created complex rocky habitat by strategically placing cobble-sized stone over conventional 5.4 to 9.1 metric ton boulders, thus creating "control" (boulder) and "treatment" (cobble) habitats. We evaluated the resultant nature-based breakwater (NBBW) developing food web versus an adjacent reference site on the same breakwater and determined that, unexpectedly, locally abundant Hemimysis anomala were impacting the food-web dynamics and feeding ecology of fishes occupying the structure. Fish and forage communities were sampled using gillnets, night scuba diving surveys, rock collections, and a novel trap to capture invertebrates. The resultant NBBW became home to a prolific population of nonindigenous Hemimysis, with indications that they were more abundant on cobble versus boulders, based on rainbow smelt feeding. This lithophilic/cave swelling mysid provided an important new food resource in Milwaukee Harbor for two introduced pelagic prey fishes: alewife (Alosa pseudoharengus) and rainbow smelt (Osmerus mordax). Gillnetting and night scuba diving surveys confirmed that rainbow smelt preferred to forage on the cobble section (p < 0.05). Hemimysis were also the primary food item consumed by nearshore game fishes such as young-of-the-year (YOY) yellow perch (Perca flavescens), YOY largemouth bass (Micropterus salmoides), and juvenile rock bass (Ambloplites rupestris). We propose that those breakwaters that harbor abundant Hemimysis constitute novel ecosystems (ecosystems that include both native and non-native biota) that might benefit harbor fisheries if well-managed. This project demonstrated how a low-cost design modification could be applied during the repair of rubble-mound, breakwater structures to achieve benefits beyond safe navigation. Integr Environ Assess Manag 2022;18:49-62. Published 2021. This article is a US Government work and is in the public domain in the USA.

Impacts of lake breeze meteorology on ozone gradient observations along Lake Michigan Shorelines in Wisconsin

Daytime onshore lake breezes are a critical factor controlling ozone abundance at coastal sites around Lake Michigan. Coastal counties along the western shore of Lake Michigan have historically observed high ozone episodes dating to the 1970s. We classified ozone episode days based on the extent or absence of the lake breeze (i.e., "inland", "near-shore" or "no" lake breeze) to establish a climatology of these events. This work demonstrated variable gradients in ozone abundances based on these different types of meteorology, with the sharpest ozone concentration gradients on days with a near-shore lake breeze. On 76-82% of days in which ozone reached 70 ppb for at least 1 hour, a lake breeze was present. Evidence of ozone gradients from multiple observation platforms during the 2017 Lake Michigan Ozone Study (LMOS 2017) are shown for two days with different depths of lake breezes.

It's complicated: Heterogeneous patterns of genetic structure in five fish species from a fragmented river suggest multiple processes can drive differentiation

Fragmentation of river systems by dams can have substantial genetic impacts on fish populations. However, genetic structure can exist naturally at small scales through processes other than isolation by physical barriers. We sampled individuals from five native fish species with varying life histories above and below a dam in the lower Boardman River, Michigan, USA, and used RADseq to investigate processes influencing genetic structure in this system. Species assessed were white sucker Catostomus commersonii, yellow perch Perca flavescens, walleye Sander vitreus, smallmouth bass Micropterus dolomieu, and rock bass Ambloplites rupestris. We detected significant differentiation within each species, but patterns of population structure varied substantially. Interestingly, genetic structure did not appear to be solely the result of fragmentation by the dam. While genetic structure in yellow perch and walleye generally coincided with "above dam" and "below dam" sampling locations, samples from our other three species did not. Specifically, samples from rock bass, smallmouth bass, and, to a much lesser extent, white sucker, aligned with a putative Great Lakes (GL) group that contained mostly individuals sampled below the dam and a putative Boardman River (BR) group that contained individuals sampled both above and below the dam, with some evidence of admixture among groups. We hypothesize that the GL and BR groups formed prior to dam construction and our samples largely represent a mixed stock that was sampled sympatrically outside of the spawning season. Support for this hypothesis is especially strong in smallmouth bass, where GL fish were 151 mm smaller than BR fish on average, suggesting a potential ontogenetic habitat shift of young GL fish into the lower river for feeding and/or refuge. Our study illuminates the complex dynamics shaping genetic structure in fragmented river systems and indicates that conclusions drawn for a single species cannot be generalized.

Mercury methylation potential in a sand dune on Lake Michigan's eastern shoreline

Lake Michigan hosts the largest freshwater sand dune system in the world and is economically important for the fishery industry and tourism. Due to industrial pollution and atmospheric mercury (Hg) deposition, toxic levels of methylmercury (MeHg) have been found in the Lake biota, but little information is known regarding MeHg sources and Hg methylation potential in the shoreline sand dunes. We conducted anaerobic incubation experiments with beach sands collected from Ludington, Michigan, and examined the effects of organic carbon substrate addition, inorganic nitrogen, and mineral magnetite on Hg methylation. Despite nutrient poor and low-organic carbon conditions, appreciable Hg methylation activity coupled with carbon degradation was observed in the sands. Addition of acetate as a carbon source substantially increased MeHg production from 2 to 380 ng/kg sediment while acetate was rapidly degraded in the first 19 days of incubation. Ammonium addition showed little influence on carbon degradation or Hg methylation, whereas iron oxide addition (~1% dry weight) significantly inhibited both carbon degradation and MeHg production (by up to 90%), highlighting strongly coupled interactions between microbes, carbon substrates, and minerals. This research demonstrates the potential of microbial Hg methylation in the sand dunes, which may play a role in MeHg input and bioaccumulation in the Lake Michigan ecosystem.

Air-water PCB fluxes from southwestern Lake Michigan revisited

From simultaneous air and water polychlorinated biphenyl (PCB) measurements collected in September 2010, we re-evaluated the direction and magnitude of net air-water exchange of PCBs in southwest Lake Michigan and compared them with estimations made using similar approaches 15 years prior. Air and water samples were collected during a research expedition on Lake Michigan at 5 km off the coast of Chicago, with prevailing winds from the southwest of our location. Gas-phase ΣPCB concentrations ranged from 190 to 1100 pg m-3 with a median of 770 pg m-3, which is similar to the concentrations measured in the City of Chicago at the same time and similar to concentrations measured in this part of the lake over the last 20 years. Water dissolved-phase ΣPCB concentrations ranged from 150 to 170 pg L-1 with a median of 160 pg L-1, which is one-tenth of that measured in the 1990s. ƩPCB net fluxes showed a slightly absorptive behavior, with a median of (-) 21 ng m-2 day-1 and an interquartile range of (-) 47 to (+) 5 ng m-2 day-1, where (-) and (+) fluxes indicate absorption and volatilization, respectively. Airborne PCB concentrations were higher when the winds were coming from Chicago and drive the deposition. Our fluxes are not significantly different from estimations from 1994 and 1995 and suggest that absorption of PCBs into the waters is slightly more prevalent than 15 years ago. It was confirmed that Chicago remains an important atmospheric source of PCBs to Lake Michigan.

Mercury source changes and food web shifts alter contamination signatures of predatory fish from Lake Michigan

To understand the impact reduced mercury (Hg) loading and invasive species have had on methylmercury bioaccumulation in predator fish of Lake Michigan, we reconstructed bioaccumulation trends from a fish archive (1978 to 2012). By measuring fish Hg stable isotope ratios, we related temporal changes in Hg concentrations to varying Hg sources. Additionally, dietary tracers were necessary to identify food web influences. Through combined Hg, C, and N stable isotopic analyses, we were able to differentiate between a shift in Hg sources to fish and periods when energetic transitions (from dreissenid mussels) led to the assimilation of contrasting Hg pools (2000 to present). In the late 1980s, lake trout δ202Hg increased (0.4‰) from regulatory reductions in regional Hg emissions. After 2000, C and N isotopes ratios revealed altered food web pathways, resulting in a benthic energetic shift and changes to Hg bioaccumulation. Continued increases in δ202Hg indicate fish are responding to several United States mercury emission mitigation strategies that were initiated circa 1990 and continued through the 2011 promulgation of the Mercury and Air Toxics Standards rule. Unlike archives of sediments, this fish archive tracks Hg sources susceptible to bioaccumulation in Great Lakes fisheries. Analysis reveals that trends in fish Hg concentrations can be substantially affected by shifts in trophic structure and dietary preferences initiated by invasive species in the Great Lakes. This does not diminish the benefits of declining emissions over this period, as fish Hg concentrations would have been higher without these actions.

Pseudomonas Diversity Within Urban Freshwaters

Freshwater lakes are home to bacterial communities with 1000s of interdependent species. Numerous high-throughput 16S rRNA gene sequence surveys have provided insight into the microbial taxa found within these waters. Prior surveys of Lake Michigan waters have identified bacterial species common to freshwater lakes as well as species likely introduced from the urban environment. We cultured bacterial isolates from samples taken from the Chicago nearshore waters of Lake Michigan in an effort to look more closely at the genetic diversity of species found there within. The most abundant genus detected was Pseudomonas, whose presence in freshwaters is often attributed to storm water or runoff. Whole genome sequencing was conducted for 15 Lake Michigan Pseudomonas strains, representative of eight species and three isolates that could not be resolved with named species. These genomes were examined specifically for genes encoding functionality which may be advantageous in their urban environment. Antibiotic resistance, amidst other known virulence factors and defense mechanisms, were identified in the genome annotations and verified in the lab. We also tested the Lake Michigan Pseudomonas strains for siderophore production and resistance to the heavy metals mercury and copper. As the study presented here shows, a variety of pseudomonads have inhabited the urban coastal waters of Lake Michigan.

Benthic video image analysis facilitates monitoring of Dreissena populations across spatial scales

In contrast to marine systems where remote sensing methods in studies of benthic organisms have been widely used for decades, these methods have experienced limited use in studies of freshwater benthos due to the general lack of large epifauna. The situation has changed with the introduction of dreissenid bivalves capable of creating visible aggregations on lake bottoms into North American freshwaters in the 1980s and 1990s. The need for assessment of Dreissena densities prompted exploration of videography as a potentially cost-effective tool. We developed a novel sampling method that analyzes video recorded using a GoPro camera mounted to a benthic sled to estimate Dreissena coverage, density, and biomass over relatively large areas of the lake bed in the Laurentian Great Lakes compared to traditional sampling methods. Using this method, we compared quagga mussel coverage, density, and biomass estimates based on three replicate Ponar grabs vs. 500 m-long video transects across 43 stations sampled in Lake Michigan in 2015. Our results showed that analysis of images from video transects dramatically increased the bottom area surveyed compared to Ponar grabs and increased the precision of Dreissena density and biomass estimations at monitoring stations. By substantially increasing the ability to detect relatively small (<20%) changes between years within a particular station, this method could be a useful and cost-effective addition for monitoring Dreissena populations in the Great Lakes and other freshwater systems where they occur.

A Comparative Examination of Recent Changes in Nutrients and Lower Food Web Structure in Lake Michigan and Lake Huron

The lower food webs of Lake Huron and Lake Michigan have experienced similar reductions in the spring phytoplankton bloom and summer populations of Diporeia and cladocerans since the early 2000s. At the same time phosphorus concentrations have decreased and water clarity and silica concentrations have increased. Key periods of change, identified by using a method based on sequential t-tests, were 2003-2005 (Huron) and 2004-2006 (Michigan). Estimated filtration capacity suggests that dreissenid grazing would have been insufficient to directly impact phytoplankton in the deeper waters of either lake by this time (mid 2000s). Despite some evidence of decreased chlorophyll:TP ratios, consistent with grazing limitation of phytoplankton, the main impact of dreissenids on the offshore waters was probably remote, e.g., through interception of nutrients by nearshore populations. A mass balance model indicates that decreased phosphorus loading could not account for observed in-lake phosphorus declines. However, model-inferred internal phosphorus dynamics were strongly correlated between the lakes, with periods of increased internal loading in the 1990s, and increased phosphorus loss starting in 2000 in Lake Michigan and 2003 in Lake Huron, prior to dreissenid expansion into deep water of both lakes. This suggests a limited role for deep populations of dreissenids in the initial phosphorus declines in the lakes, and also suggests a role for meteorological influence on phosphorus dynamics. The high synchrony in lower trophic level changes between Lake Michigan and Lake Huron suggests that both lakes should be considered when investigating underlying causal factors of these changes.

Using medically-derived iodine-131 to track sewage effluent in the Laurentian Great Lakes

Tracking sewage wastewater in a large lake is difficult. Concentrations of pharmaceuticals that can be used as indicator compounds are quickly diluted and not easy to measure. In this study, we examined the potential of using medically-derived iodine-131 (¹³¹I, t_½ = 8.02 d) as a tracer for Milwaukee sewage effluent in Lake Michigan. ¹³¹I activities in sewage effluent from two Milwaukee wastewater treatment plants (WWTPs) were measured in conjunction with ¹³¹I activities in water, sediment and biota in the Milwaukee Outer Harbor and Lake Michigan. ¹³¹I discharge rates from both WWTPS ranged from 34 ± 15 to 1807 ± 24 MBq d^-1, with average and median ¹³¹I discharges of 278 and 129 MBq d^-1. A budget of ¹³¹I in the Milwaukee Outer Harbor - based on measured sediment and water column inventories - showed that ∼11% of the ¹³¹I discharged to the harbor was scavenged to bottom sediments, ∼19% decayed in the harbor water column, and ∼70% was flushed out of the harbor to Lake Michigan. From this budget, we derived a harbor flushing rate of 3.1 days. In Lake Michigan, ¹³¹I activity was found in Cladophora algae (undetected to 91 ± 2 Bq kg^-1) along ∼40 km of shoreline. Benthic trawl samples showed ¹³¹I activity up to 8 km from shore. Calculated ¹³¹I length scales were 30 km alongshore and 3.4 km offshore and corresponded to sewage effluent dispersion rates of ∼2.6 km d^-1 and ∼0.3 km d^-1 in along- and offshore directions. Using ¹³¹I as a tracer of sewage effluent from other coastal municipalities to the Laurentian Great Lakes appears feasible, particularly for larger (>10⁵) population centers.

Spatiotemporal variations in the abundance and composition of bulk and chromophoric dissolved organic matter in seasonally hypoxia-influenced Green Bay, Lake Michigan, USA

Green Bay, Lake Michigan, USA, is the largest freshwater estuary in the Laurentian Great Lakes and receives disproportional terrestrial inputs as a result of a high watershed to bay surface area ratio. While seasonal hypoxia and the formation of "dead zones" in Green Bay have received increasing attention, there are no systematic studies on the dynamics of dissolved organic matter (DOM) and its linkage to the development of hypoxia. During summer 2014, bulk dissolved organic carbon (DOC) analysis, UV-vis spectroscopy, and fluorescence excitation-emission matrices (EEMs) coupled with PARAFAC analysis were used to quantify the abundance, composition and source of DOM and their spatiotemporal variations in Green Bay, Lake Michigan. Concentrations of DOC ranged from 202 to 571μM-C (average=361±73μM-C) in June and from 279 to 610μM-C (average=349±64μM-C) in August. In both months, absorption coefficient at 254nm (a254) was strongly correlated to bulk DOC and was most abundant in the Fox River, attesting a dominant terrestrial input. Non-chromophoric DOC comprised, on average, ~32% of bulk DOC in June with higher terrestrial DOM and ~47% in August with higher aquagenic DOM, indicating that autochthonous and more degraded DOM is of lower optical activity. PARAFAC modeling on EEM data resulted in four major fluorescent DOM components, including two terrestrial humic-like, one aquagenic humic-like, and one protein-like component. Variations in the abundance of DOM components further supported changes in DOM sources. Mixing behavior of DOM components also indicated that while bulk DOM behaved quasi-conservatively, significant compositional changes occurred during transport from the Fox River to the open bay.

Effects of temperature on Renibacterium salmoninarum infection and transmission potential in Chinook salmon, Oncorhynchus tshawytscha (Walbaum)

Renibacterium salmoninarum is a significant pathogen of salmonids and the causative agent of bacterial kidney disease (BKD). Water temperature affects the replication rate of pathogens and the function of the fish immune system to influence the progression of disease. In addition, rapid shifts in temperature may serve as stressors that reduce host resistance. This study evaluated the effect of shifts in water temperature on established R. salmoninarum infections. We challenged Chinook salmon with R. salmoninarum at 12 °C for 2 weeks and then divided the fish into three temperature groups (8, 12 and 15 °C). Fish in the 8 °C group had significantly higher R. salmoninarum-specific mortality, kidney R. salmoninarum loads and bacterial shedding rates relative to the fish held at 12 or 15 °C. There was a trend towards suppressed bacterial load and shedding in the 15 °C group, but the results were not significant. Bacterial load was a significant predictor of shedding for the 8 and 12 °C groups but not for the 15 °C group. Overall, our results showed little effect of temperature stress on the progress of infection, but do support the conclusion that cooler water temperatures contribute to infection progression and increased transmission potential in Chinook salmon infected with R. salmoninarum.

Removal of Trace Pharmaceuticals from Water using coagulation and powdered activated carbon as pretreatment to ultrafiltration membrane system

In this study, the efficacy of water treatment technologies: ultra-filtration (UF), powdered activated carbon (PAC), coagulation (COA) and a combination of these technologies (PAC/UF and COA/UF) to remove target pharmaceuticals (Acetaminophen, Bezafibrate, Caffeine, Carbamazepine, Cotinine, Diclofenac, Gemfibrozil, Ibuprofen, Metoprolol, Naproxen, Sulfadimethoxine, Sulfamethazine, Sulfamethoxazole, Sulfathiazole, Triclosan and Trimethoprim) was investigated. Samples of wastewater from municipal WWTPs were analyzed using direct aqueous injection High Performance Liquid Chromatography with Tandem Quadrupole Mass Spectrometric (LC/MS/MS) detection. On concentration basis, results showed an average removal efficiency of 29%, 50%, and 7%, respectively, for the UF, PAC dosage of 50ppm, and COA dosage of 10ppm. When PAC dosage of 100ppm was used as pretreatment to the combined PAC and UF in-line membrane system, a 90.3% removal efficiency was achieved. The removal efficiency of UF in tandem with COA was 33%, an increase of 4% compared with the single UF treatment. The adsorption effect of PAC combined with the physical separation process of UF revealed the best treatment strategy for removing pharmaceutical contaminant from water.

Dynamics of dissolved and particulate phosphorus influenced by seasonal hypoxia in Green Bay, Lake Michigan

Despite major investments in point source reductions, portions of the Great Lakes, like Green Bay, remain hypereutrophic and are subject to persistent seasonal hypoxia. Phosphorus (P) is generally a limiting nutrient in the Great Lakes ecosystem, but not all P species are equally bioavailable, and the dynamics of nutrients and their correlation to algal bloom remain poorly characterized, in part, due to a lack of adequate quantification of P chemical speciation. During summer 2014, water samples were collected from seasonally hypoxic Green Bay for measurements of dissolved and particulate inorganic and organic P to examine P cycling dynamics along a steep nutrient gradient ranging from Fox River inflow dominated eutrophic waters in the southern bay to mesotrophic northern waters near the bay's connection with open Lake Michigan. River-derived dissolved and particulate P was quickly removed from the water column in southern Green Bay through biological uptake and sedimentation. Concentrations of phosphate or dissolved inorganic P (DIP) dramatically decreased from 828 ± 216 nM in the Fox River, comprising 57 ± 1% of the total dissolved P, to 24 ± 9 nM in northern Green Bay where dissolved organic P (DOP) became predominant (>80%). Generally low phosphate concentrations and extremely high dissolved organic C/P ratios (2090 ± 1160 in August 2014) suggested high DOP turnover rates and active transformation between DOP and DIP through organic degradation during P-limited conditions in Green Bay. Elevated DIP levels were accompanied by low dissolved oxygen in deeper waters (10-15m) of central Green Bay where hypoxia-development occurred, suggesting the release of DIP through particle regeneration under hypoxic conditions enhanced by lateral transport and sediment resuspension. High partition coefficients (Kd) of both inorganic and organic P and their significant negative correlation with suspended particulate matter concentrations indicated the particle-reactive nature of P in freshwater environments and may imply that DOP could also be bioavailable under P-limitation.

18S rDNA dataset profiling microeukaryotic populations within Chicago area nearshore waters

Despite their critical role in the aquatic food web and nutrient cycling, microeukaryotes within freshwater environments are under-studied. Herein we present the first high-throughput molecular survey of microeukaryotes within Lake Michigan. Every two weeks from May 13 to August 5, 2014, we collected surface water samples from the nearshore waters of four Chicago area beaches: Gillson Park, Montrose Beach, 57th Street Beach, and Calumet Beach. Four biological replicates were collected for each sampling date and location, resulting in 112 samples. Eighty-nine of these samples were surveyed through targeted sequencing of the V7 and V8 regions of the 18S rDNA gene. Both technical and biological replicates were sequenced and are included in this dataset. Raw sequence data is available via NCBI's SRA database (BioProject PRJNA294919).

Assessment of microbial populations within Chicago area nearshore waters and interfaces with river systems

The Chicago area locks separate and control water flow between the freshwaters of Lake Michigan and the network of Illinois waterways. Under extreme storm conditions, however, the locks are opened and storm waters, untreated waste, and runoff are released directly into the lake. These combined sewer overflow (CSO) events introduce microbes, viruses, and nutrients such as nitrogen and phosphorous into nearshore waters which likely affect the native species. We collected surface water samples from four Chicago area beaches – Gillson Park, Montrose Beach, 57th Street Beach, and Calumet Beach – every two weeks from May 13 through August 5, 2014. Sampling was conducted with four biological replicates for each sampling date and location, resulting in 112 samples. Each community was surveyed through targeted sequencing of the V4 16S rRNA gene. Technical replicates were also sequenced and are included in this dataset. Taxa were identified using Mothur. Raw sequence data is available via NCBI׳s SRA database (part of BioProject PRJNA245802).

Survey of microbial populations within Lake Michigan nearshore waters at two Chicago public beaches

Lake Michigan is a critical resource for the residents of Chicago, providing drinking water to its 9+ million area residents. Along Chicago׳s 26 miles of public beaches the populous urban environment and this freshwater environment meet. While city-led monitoring initiatives investigate pathogenic bacteria in these nearshore waters, very little is known about other microbial species present. We collected surface water samples from two Chicago public beaches - Montrose Beach and 57th Street Beach - every ten days from June 5 through August 4, 2013 as well as once in early Fall (October 4, 2013). Sixteen bacterial communities in total were surveyed through targeted sequencing of the V4 16S rRNA gene. Taxa were identified using Mothur. Raw sequence data is available via NCBI׳s SRA database (part of BioProject PRJNA245802). OTU calls for each read are also available at our online repository: www.lakemichiganmicrobes.com/bacteria/.

A unique assemblage of cosmopolitan freshwater bacteria and higher community diversity differentiate an urbanized estuary from oligotrophic Lake Michigan

Water quality is impacted significantly by urbanization. The delivery of increased nutrient loads to waterways is a primary characteristic of this land use change. Despite the recognized effects of nutrient loading on aquatic systems, the influence of urbanization on the bacterial community composition of these systems is not understood. We used massively-parallel sequencing of bacterial 16S rRNA genes to examine the bacterial assemblages in transect samples spanning the heavily urbanized estuary of Milwaukee, WI to the relatively un-impacted waters of Lake Michigan. With this approach, we found that genera and lineages common to freshwater lake epilimnia were common and abundant in both the high nutrient, urban-impacted waterways, and the low nutrient Lake Michigan. Although the two environments harbored many taxa in common, we identified a significant change in the community assemblage across the urban-influence gradient, and three distinct community features drove this change. First, we found the urban-influenced waterways harbored significantly greater bacterial richness and diversity than Lake Michigan (i.e., taxa augmentation). Second, we identified a shift in the relative abundance among common freshwater lineages, where acI, acTH1, Algoriphagus and LD12, had decreased representation and Limnohabitans, Polynucleobacter, and Rhodobacter had increased representation in the urban estuary. Third, by oligotyping 18 common freshwater genera/lineages, we found that oligotypes (highly resolved sequence clusters) within many of these genera/lineages had opposite preferences for the two environments. With these data, we suggest many of the defined cosmopolitan freshwater genera/lineages contain both oligotroph and more copiotroph species or populations, promoting the idea that within-genus lifestyle specialization, in addition to shifts in the dominance among core taxa and taxa augmentation, drive bacterial community change in urbanized waters.

Survey of viral populations within Lake Michigan nearshore waters at four Chicago area beaches

In comparison to the oceans, freshwater environments represent a more diverse community of microorganisms, exhibiting comparatively high levels of variability both temporally and spatially Maranger and Bird, Microb. Ecol. 31 (1996) 141–151. This level of variability is likely to extend to the world of viruses as well, in particular bacteria-infecting viruses (bacteriophages). Phages are known to influence bacterial diversity, and therefore key processes, in environmental niches across the globe Clokie et al., Bacteriophage 1 (2011) 31–45; Jacquet et al., Adv. Ocean Limn. 1 (2010) 97–141; Wilhelm and Suttle, Bioscience 49 (1999) 781–788; Bratback et al., Microb. Ecol. 28 (1994) 209–221. Despite their prevalence and likely critical role in freshwater environments, very few viral species have been characterized. Metagenomic approaches, however, have allowed for a glimpse into phage diversity. We collected surface water samples from four Chicago area beaches – Gillson Park, Montrose Beach, 57th Street Beach, and Calumet Beach – every two weeks from May 13 through August 5, 2014. Sampling was conducted with four biological replicates for each sampling date and location, resulting in 112 samples. DNA isolated from each of the individual samples for a given collection date/location was pooled together, with one exception – Calumet Beach on August 5, 2014 – in which each biological replicate was sequenced individually. Raw sequence data is available via NCBI’s SRA database (part of BioProject PRJNA248239).

Evolutionary stasis despite selection on a heritable trait in an invasive zooplankton

Invasive species are one of the greatest threats to ecosystems, and there is evidence that evolution plays an important role in the success or failure of invasions. Yet, few studies have measured natural selection and evolutionary responses to selection in invasive species, particularly invasive animals. We quantified the strength of natural selection on the defensive morphology (distal spine) of an invasive zooplankton, Bythotrephes longimanus, in Lake Michigan across multiple months during three growing seasons. We used multiple lines of evidence, including historic and contemporary wild-captured individuals and palaeoecology of retrieved spines, to assess phenotypic change in distal spine length since invasion. We found evidence of temporally variable selection, with selection for decreased distal spine length early in the growing season and selection for increased distal spine length later in the season. This trend in natural selection is consistent with seasonal changes in the relative strength of non-gape-limited and gape-limited fish predation. Yet, despite net selection for increased distal spine length and a known genetic basis for distal spine length, we observed little evidence of an evolutionary response to selection. Multiple factors likely limit an evolutionary response to selection, including genetic correlations, trade-offs between components of fitness, and phenotypic plasticity.

An integrated assessment for wind energy in Lake Michigan coastal counties

The benefits and challenges of onshore and offshore wind energy development were assessed for a 4-county area of coastal Michigan. Economic, social, environmental, and spatial dimensions were considered. The coastal counties have suitable wind resources for energy development, which could contribute toward Michigan's 10% renewable energy standard. Wind energy is cost-effective with contract prices less than the benchmark energy price of a new coal-fired power plant. Constructing a 100 MW wind farm could have a $54.7 million economic impact. A patchwork of township-level zoning ordinances regulates wind energy siting. Voluntary collaborations among adjacent townships standardizing the ordinances could reduce regulatory complexity. A Delphi Inquiry on offshore wind energy in Lake Michigan elicited considerable agreement on its challenges, but little agreement on the benefits to coastal communities. Offshore turbines could be acceptable to the participants if they reduced pollution, benefited coastal communities, involved substantial public participation, and had minimal impact on property values and tourism. The US Coast Guard will take a risk-based approach to evaluating individual offshore developments and has no plans to issue blanket restrictions around the wind farms. Models showed that using wind energy to reach the remainder of the 10% renewable energy standard could reduce SO2 , NOx , and CO2 pollution by 4% to 7%. Turbines are highly likely to impact the area's navigational and defense radar systems but planning and technological upgrades can reduce the impact. The integrated assessment shows that responsible wind energy development can enhance the quality of life by reducing air pollution and associated health problems and enhancing economic development. Policies could reduce the negative impacts to local communities while preserving the benefits to the broader region.

Historical trends of inorganic and organic fluorine in sediments of Lake Michigan

Total fluorine (TF), extractable organic fluorine (EOF) and poly- and per-fluorinated compounds (PFCs) were measured in eight dated cores of sediment taken along with 27 surface sediments from Lake Michigan in 2010. Based on rates of sedimentation, total concentrations of PFCs (∑PFCs) reached a maximum in the later 1990s and early 2000s. This result is consistent with rapid changes in production and subsequent sedimentation. Perfluorooctanesulfonate (PFOS) and perfluorooctanoate (PFOA) are still the predominant PFCs in the cores, but in surface sediments, concentrations of perfluorobutane sulfonate (PFBS) and perfluorobutanoic acid (PFBA) are now occurring at concentrations comparable to those of PFOS and PFOA. This observation is consistent with shifts in patterns of production and use in the US and Canada. Concentrations of TF in sediments were greater than those of EOF. This result is consistent with a larger proportion of un-extractable fluorinated material in both surface sediments and in cores.

Genetic and maternal effects on tail spine and body length in the invasive spiny water flea (Bythotrephes longimanus)

Interest in the evolution of invasive species has grown in recent years, yet few studies have investigated sources of variation in invasive species traits experiencing natural selection. The spiny water flea, Bythotrephes longimanus, is an invasive zooplankton in the Great Lakes that exhibits seasonal changes in tail spine and body length consistent with natural selection. Evolution of Bythotrephes traits, however, depends on the presence and magnitude of quantitative genetic variation, which could change within or across years. Clonal analysis of wild-captured Bythotrephes indicated that variance components for distal spine length were variable among but not within years. Spine length was always heritable but was not always influenced by maternal effects. In contrast, variance components for body length varied both within and among years, but likewise body length was always heritable and not always influenced by maternal effects. Results indicate that important Bythotrephes traits have heritable variation comparable to native species and other invasive species that would enable an evolutionary response to natural selection. This evolutionary capacity could contribute to the widespread success and dramatic effects of Bythotrephes invasion in systems with diverse biotic and abiotic conditions.

Spatial and temporal variations of persistent organic pollutants impacted by episodic sediment resuspension in southern Lake Michigan

The impacts of large-scale, episodic sediment resuspension on the cycling of polychlorinated biphenyl congeners (PCBs) were examined using a spatially coordinated air and water sampling strategy conducted in southern Lake Michigan in the late winters of 1998, 1999, and 2000. We found no significant temporal changes in gas phase, dissolved phase, or suspended sediment PCB concentrations despite large-scale seasonal storms occurring before and after sampling campaigns. Only gas phase and suspended sediment PCBs varied spatially. Higher total suspended material (TSM) concentrations and fraction organic carbon (f_oc ) were measured at sampling stations located in the near-shore region of southern Lake Michigan than at open-water sampling stations. Gas phase concentrations (ΣPCB_g) were higher in the west (0.436 ± 0.200 ng/m³, n = 11) and south (0.408 ± 0.286 ng/m³, n = 5) than the east (0.214 ± 0.082 ng/m³, n = 10) and central (0.253 ± 0.145 ng/m³, n = 8) regions of southern Lake Michigan. Dissolved phase concentrations (ΣPCB_d) averaged 0.18 ± 0.024 ng/L (n = 52); suspended sediment concentrations (ΣPCB_s) accounted for between 4% and 72% (23 ± 4%, n = 52) of the total ΣPCB concentrations (ΣPCB_T = ΣPCB_d + ΣPCB_s). Despite no consistent temporal variations in both dissolved phase or suspended sediment ΣPCB concentrations, there were temporal and spatial variations in the distribution shift between phases that can be linked to sediment resuspension, not a state of equilibrium. Specifically, our analysis suggests sediment resuspension results in preferential sorption of heavier, more chlorinated PCB congeners.