Human NMDAR autoantibodies disrupt excitatory-inhibitory balance, leading to hippocampal network hypersynchrony

Anti-NMDA receptor autoantibodies (NMDAR-Abs) in patients with NMDAR encephalitis cause severe disease symptoms resembling psychosis and cause cognitive dysfunction. After passive transfer of patients' cerebrospinal fluid or human monoclonal anti-GluN1-autoantibodies in mice, we find a disrupted excitatory-inhibitory balance resulting from CA1 neuronal hypoexcitability, reduced AMPA receptor (AMPAR) signaling, and faster synaptic inhibition in acute hippocampal slices. Functional alterations are also reflected in widespread remodeling of the hippocampal proteome, including changes in glutamatergic and GABAergic neurotransmission. NMDAR-Abs amplify network γ oscillations and disrupt θ-γ coupling. A data-informed network model reveals that lower AMPAR strength and faster GABAA receptor current kinetics chiefly account for these abnormal oscillations. As predicted in silico and evidenced ex vivo, positive allosteric modulation of AMPARs alleviates aberrant γ activity, reinforcing the causative effects of the excitatory-inhibitory imbalance. Collectively, NMDAR-Ab-induced aberrant synaptic, cellular, and network dynamics provide conceptual insights into NMDAR-Ab-mediated pathomechanisms and reveal promising therapeutic targets that merit future in vivo validation.

Dynamic System Stability Modeling Approach with Sparrow-Inspired Meta-Heuristic Optimization Algorithm

Aiming at the accurate prediction of the inception of instability in a compressor, a dynamic system stability model is proposed based on a sparrow-inspired meta-heuristic optimization algorithm in this article. To achieve this goal, a spatial mode is employed for flow field feature extraction and modeling object acquisition. The nonlinear characteristic presented in the system is addressed using fuzzy entropy as the identification strategy to provide a basis for instability determination. Using Sparrow Search Algorithm (SSA) optimization, a Radial Basis Function Neural Network (RBFNN) is achieved for the performance prediction of system status. A Logistic SSA solution is first established to seek the optimal parameters of the RBFNN to enhance prediction accuracy and stability. On the basis of the RBFNN-LSSA hybrid model, the stall inception is detected about 35.8 revolutions in advance using fuzzy entropy identification. To further improve the multi-step network model, a Tent SSA is introduced to promote the accuracy and robustness of the model. A wider range of potential solutions within the TSSA are explored by incorporating the Tent mapping function. The TSSA-based optimization method proves a suitable adaptation for complex nonlinear dynamic modeling. And this method demonstrates superior performance, achieving 42 revolutions of advance warning with multi-step prediction. This RBFNN-TSSA model represents a novel and promising approach to the application of system modeling. These findings contribute to enhancing the abnormal warning capability of dynamic systems in compressors.

Process Parameter Optimization for Hybrid Manufacturing of PLA Components with Improved Surface Quality

This paper presents a new method of process parameter optimization, adequate for 3D printing of PLA (Polylactic Acid) components. The authors developed a new piece of Hybrid Manufacturing Equipment (HME), suitable for producing complex parts made from a biodegradable thermoplastic polymer, to promote environmental sustainability. Our new HME equipment produces PLA parts by both additive and subtractive techniques, with the aim of obtaining accurate PLA components with good surface quality. A design of experiments has been applied for optimization purposes. The following manufacturing parameters were analyzed: rotation of the spindle, cutting depth, feed rate, layer thickness, nozzle speed, and surface roughness. Linear regression models and neural network models were developed to improve and predict the surface roughness of the manufactured parts. A new test part was designed and manufactured from PLA to validate the new mathematical models, which can now be applied for producing complex parts made from polymer materials. The neural network modeling (NNM) allowed us to obtain much better precision in predicting the final surface roughness (Ra), as compared to the conventional linear regression models (LNM). Based on these modelling methods, the authors developed a practical methodology to optimize the process parameters in order to improve the surface quality of the 3D-printed components and to predict the actual roughness values. The main advantages of the results proposed for hybrid manufacturing using polymer materials like PLA are the optimized process parameters for both 3D printing and milling. A case study has been undertaken by the authors, who designed a specific test part for their new hybrid manufacturing equipment (HME), in order to test the new methodology of optimizing the process parameters, to validate the capability of the new HME. At the same time, this new methodology could be replicated by other researchers and is useful as a guideline on how to optimize the process parameters for newly developed equipment. The innovative approach holds potential for widespread equipment functionality enhancement among other users.

Neural Network Approaches for Soft Biological Tissue and Organ Simulations

Given the functional complexities of soft tissues and organs, it is clear that computational simulations are critical in their understanding and for the rational basis for the development of therapies and replacements. A key aspect of such simulations is accounting for their complex, nonlinear, anisotropic mechanical behaviors. While soft tissue material models have developed to the point of high fidelity, in-silico implementation is typically done using the finite element (FE) method, which remains impractically slow for translational clinical time frames. As a potential path toward addressing the development of high fidelity simulations capable of performing in clinically relevant time frames, we review the use of neural networks (NN) for soft tissue and organ simulation using two approaches. In the first approach, we show how a NN can learn the responses for a detailed meso-structural soft tissue material model. The NN material model not only reproduced the full anisotropic mechanical responses but also demonstrated a considerable efficiency improvement, as it was trained over a range of realizable fibrous structures. In the second approach, we go a step further with the use of a physics-based surrogate model to directly learn the displacement field solution without the need for raw training data or FE simulation datasets. In this approach we utilize a finite element mesh to define the domain and perform the necessary integrations, but not the finite element method (FEM) itself. We demonstrate with this approach, termed neural network finite element (NNFE), results in a trained NNFE model with excellent agreement with the corresponding "ground truth" FE solutions over the entire physiological deformation range on a cuboidal myocardium specimen. More importantly, the NNFE approach provided a significantly decreased computational time for a range of finite element mesh sizes. Specifically, as the FE mesh size increased from 2744 to 175,615 elements, the NNFE computational time increased from 0.1108 s to 0.1393 s, while the "ground truth" FE model increased from 4.541 s to 719.9 s, with the same effective accuracy. These results suggest that NNFE run times are significantly reduced compared with the traditional large-deformation-based finite element solution methods. We then show how a nonuniform rational B-splines (NURBS)-based approach can be directly integrated into the NNFE approach as a means to handle real organ geometries. While these and related approaches are in their early stages, they offer a method to perform complex organ-level simulations in clinically relevant time frames without compromising accuracy.

Design of a Phenotypic Sensor About Protein and Moisture in Wheat Grain

A near-infrared (NIR) spectrometer can perceive the change in characteristics of the grain reflectance spectrum quickly and nondestructively, which can be used to determine grain quality information. The full-band spectral information of samples of multiple physical states can be measured using existing instruments, yet it is difficult for the full-band instrument to be widely used in grain quality detection due to its high price, large size, non-portability, and inability to directly output the grain quality information. Because of the above problems, a phenotypic sensor about grain quality was developed for wheat, and four wavelengths were chosen. The interference of noise signals such as ambient light was eliminated by the phenotypic sensor using the modulated light signal and closed sample pool, the shape and size of the incident light spot of the light source were determined according to the requirement for collecting the reflectance spectrum of the grain, and the luminous units of the light source with stable light intensity and balanced luminescence were developed. Moreover, the sensor extracted the reflectance spectrum information using a weak optical signal conditioning circuit, which improved the resolution of the reflectance signal. A grain quality prediction model was created based on the actual moisture and protein content of grain obtained through Physico-chemical analyses. The calibration test showed that the R² of the relative diffuse reflectance (RDR) of all four wavelengths of the phenotypic sensor and the reflectance of the diffusion fabrics were higher than 0.99. In the noise level and repeatability tests, the standard deviations of the RDR of two types of wheat measured by the sensor were much lower than 1.0%, indicating that the sensor could accurately collect the RDR of wheat. In the calibration test, the root mean square errors (RMSE) of protein and moisture content of wheat in the Test set were 0.4866 and 0.2161%, the mean absolute errors (MAEs) were 0.6515 and 0.3078%, respectively. The results showed that the NIR phenotypic sensor about grain quality developed in this study could be used to collect the diffuse reflectance of grains and the moisture and protein content in real-time.

Multiparameter Neural Network Modeling of Facilitated Transport Mixed Matrix Membranes for Carbon Dioxide Removal

Membranes for carbon capture have improved significantly with various promoters such as amines and fillers that enhance their overall permeance and selectivity toward a certain particular gas. They require nominal energy input and can achieve bulk separations with lower capital investment. The results of an experiment-based membrane study can be suitably extended for techno-economic analysis and simulation studies, if its process parameters are interconnected to various membrane performance indicators such as permeance for different gases and their selectivity. The conventional modelling approaches for membranes cannot interconnect desired values into a single model. Therefore, such models can be suitably applicable to a particular parameter but would fail for another process parameter. With the help of artificial neural networks, the current study connects the concentrations of various membrane materials (polymer, amine, and filler) and the partial pressures of carbon dioxide and methane to simultaneously correlate three desired outputs in a single model: CO₂ permeance, CH₄ permeance, and CO₂/CH₄ selectivity. These parameters help predict membrane performance and guide secondary parameters such as membrane life, efficiency, and product purity. The model results agree with the experimental values for a selected membrane, with an average absolute relative error of 6.1%, 4.2%, and 3.2% for CO₂ permeance, CH₄ permeance, and CO₂/CH₄ selectivity, respectively. The results indicate that the model can predict values at other membrane development conditions.

Flocculation of Chlorella vulgaris with alum and pH adjustment

Microalgae, a group of photosynthetic microorganisms, are a promising feedstock for biodiesel production, but their biomass retrieval is a challenging task. Flocculation is a feasible method for dewatering and harvesting microalgae biomass. In the current study, the effect of alum flocculation on Chlorella vulgaris biomass retrieval has been studied. Alum structural changes with pH were led to a full factorial design to address the effect of this chemical structure changes at different pH values. It is observed that the best flocculation efficiency could be achieved in the natural pH value of C. vulgaris growth medium (8.2) with less than 0.5 g/L flocculant addition, which would lead to the flocculation efficiency of more than 90%. An ensemble architecture of neural networks successfully employed for flocculation modeling.

Sensitivity to geometric shape regularity in humans and baboons: A putative signature of human singularity

Among primates, humans are special in their ability to create and manipulate highly elaborate structures of language, mathematics, and music. Here we show that this sensitivity to abstract structure is already present in a much simpler domain: the visual perception of regular geometric shapes such as squares, rectangles, and parallelograms. We asked human subjects to detect an intruder shape among six quadrilaterals. Although the intruder was always defined by an identical amount of displacement of a single vertex, the results revealed a geometric regularity effect: detection was considerably easier when either the base shape or the intruder was a regular figure comprising right angles, parallelism, or symmetry rather than a more irregular shape. This effect was replicated in several tasks and in all human populations tested, including uneducated Himba adults and French kindergartners. Baboons, however, showed no such geometric regularity effect, even after extensive training. Baboon behavior was captured by convolutional neural networks (CNNs), but neither CNNs nor a variational autoencoder captured the human geometric regularity effect. However, a symbolic model, based on exact properties of Euclidean geometry, closely fitted human behavior. Our results indicate that the human propensity for symbolic abstraction permeates even elementary shape perception. They suggest a putative signature of human singularity and provide a challenge for nonsymbolic models of human shape perception.

Pathological Aspects of Neuronal Hyperploidization in Alzheimer's Disease Evidenced by Computer Simulation

When subjected to stress, terminally differentiated neurons are susceptible to reactivate the cell cycle and become hyperploid. This process is well documented in Alzheimer's disease (AD), where it may participate in the etiology of the disease. However, despite its potential importance, the effects of neuronal hyperploidy (NH) on brain function and its relationship with AD remains obscure. An important step forward in our understanding of the pathological effect of NH has been the development of transgenic mice with neuronal expression of oncogenes as model systems of AD. The analysis of these mice has demonstrated that forced cell cycle reentry in neurons results in most hallmarks of AD, including neurofibrillary tangles, Aβ peptide deposits, gliosis, cognitive loss, and neuronal death. Nevertheless, in contrast to the pathological situation, where a relatively small proportion of neurons become hyperploid, neuronal cell cycle reentry in these mice is generalized. We have recently developed an in vitro system in which cell cycle is induced in a reduced proportion of differentiated neurons, mimicking the in vivo situation. This manipulation reveals that NH correlates with synaptic dysfunction and morphological changes in the affected neurons, and that membrane depolarization facilitates the survival of hyperploid neurons. This suggests that the integration of synaptically silent, hyperploid neurons in electrically active neural networks allows their survival while perturbing the normal functioning of the network itself, a hypothesis that we have tested in silico. In this perspective, we will discuss on these aspects trying to convince the reader that NH represents a relevant process in AD.

A Framework for Collaborative Curation of Neuroscientific Literature

Large models of complex neuronal circuits require specifying numerous parameters, with values that often need to be extracted from the literature, a tedious and error-prone process. To help establishing shareable curated corpora of annotations, we have developed a literature curation framework comprising an annotation format, a Python API (NeuroAnnotation Toolbox; NAT), and a user-friendly graphical interface (NeuroCurator). This framework allows the systematic annotation of relevant statements and model parameters. The context of the annotated content is made explicit in a standard way by associating it with ontological terms (e.g., species, cell types, brain regions). The exact position of the annotated content within a document is specified by the starting character of the annotated text, or the number of the figure, the equation, or the table, depending on the context. Alternatively, the provenance of parameters can also be specified by bounding boxes. Parameter types are linked to curated experimental values so that they can be systematically integrated into models. We demonstrate the use of this approach by releasing a corpus describing different modeling parameters associated with thalamo-cortical circuitry. The proposed framework supports a rigorous management of large sets of parameters, solving common difficulties in their traceability. Further, it allows easier classification of literature information and more efficient and systematic integration of such information into models and analyses.

On the Phase Relationship between Excitatory and Inhibitory Neurons in Oscillation

Characteristic phase shifts between discharges of pyramidal cells and interneurons in oscillation have been widely observed in experiments, and they have been suggested to play important roles in neural computation. Previous studies mainly explored two independent mechanisms to generate neural oscillation, one is based on the interaction loop between pyramidal cells and interneurons, referred to as the E-I loop, and the other is based on the interaction loop between interneurons, referred to as the I-I loop. In the present study, we consider neural networks consisting of both the E-I and I-I loops, and the network oscillation can operate under either E-I loop dominating mode or I-I loop dominating mode, depending on the network structure, and neuronal connection patterns. We found that the phase shift between pyramidal cells and interneurons displays different characteristics in different oscillation modes, and its amplitude varies with the network parameters. We expect that this study helps us to understand the structural characteristics of neural circuits underlying various oscillation behaviors observed in experiments.

Context-dependent memory decay is evidence of effort minimization in motor learning: a computational study

Recent theoretical models suggest that motor learning includes at least two processes: error minimization and memory decay. While learning a novel movement, a motor memory of the movement is gradually formed to minimize the movement error between the desired and actual movements in each training trial, but the memory is slightly forgotten in each trial. The learning effects of error minimization trained with a certain movement are partially available in other non-trained movements, and this transfer of the learning effect can be reproduced by certain theoretical frameworks. Although most theoretical frameworks have assumed that a motor memory trained with a certain movement decays at the same speed during performing the trained movement as non-trained movements, a recent study reported that the motor memory decays faster during performing the trained movement than non-trained movements, i.e., the decay rate of motor memory is movement or context dependent. Although motor learning has been successfully modeled based on an optimization framework, e.g., movement error minimization, the type of optimization that can lead to context-dependent memory decay is unclear. Thus, context-dependent memory decay raises the question of what is optimized in motor learning. To reproduce context-dependent memory decay, I extend a motor primitive framework. Specifically, I introduce motor effort optimization into the framework because some previous studies have reported the existence of effort optimization in motor learning processes and no conventional motor primitive model has yet considered the optimization. Here, I analytically and numerically revealed that context-dependent decay is a result of motor effort optimization. My analyses suggest that context-dependent decay is not merely memory decay but is evidence of motor effort optimization in motor learning.

On the relationship between persistent delay activity, repetition enhancement and priming

Human efficiency in processing incoming stimuli (in terms of speed and/or accuracy) is typically enhanced by previous exposure to the same, or closely related stimuli—a phenomenon referred to as priming. In spite of the large body of knowledge accumulated in behavioral studies about the conditions conducive to priming, and its relationship with other forms of memory, the underlying neuronal correlates of priming are still under debate. The idea has repeatedly been advanced that a major neuronal mechanism supporting behaviorally-expressed priming is repetition suppression, a widespread reduction of spiking activity upon stimulus repetition which has been routinely exposed by single-unit recordings in non-human primates performing delayed-response, as well as passive fixation tasks. This proposal is mainly motivated by the observation that, in human fMRI studies, priming is associated to a significant reduction of the BOLD signal (widely interpreted as a proxy of the level of spiking activity) upon stimulus repetition. Here, we critically re-examine a large part of the electrophysiological literature on repetition suppression in non-human primates and find that repetition suppression is systematically accompanied by stimulus-selective delay period activity, together with repetition enhancement, an increase of spiking activity upon stimulus repetition in small neuronal populations. We argue that repetition enhancement constitutes a more viable candidate for a putative neuronal substrate of priming, and propose a minimal framework that links together, mechanistically and functionally, repetition suppression, stimulus-selective delay activity and repetition enhancement.

A model of hippocampal spiking responses to items during learning of a context-dependent task

Single unit recordings in the rat hippocampus have demonstrated shifts in the specificity of spiking activity during learning of a contextual item-reward association task. In this task, rats received reward for responding to different items dependent upon the context an item appeared in, but not dependent upon the location an item appears at. Initially, neurons in the rat hippocampus primarily show firing based on place, but as the rat learns the task this firing became more selective for items. We simulated this effect using a simple circuit model with discrete inputs driving spiking activity representing place and item followed sequentially by a discrete representation of the motor actions involving a response to an item (digging for food) or the movement to a different item (movement to a different pot for food). We implemented spiking replay in the network representing neural activity observed during sharp-wave ripple events, and modified synaptic connections based on a simple representation of spike-timing dependent synaptic plasticity. This simple network was able to consistently learn the context-dependent responses, and transitioned from dominant coding of place to a gradual increase in specificity to items consistent with analysis of the experimental data. In addition, the model showed an increase in specificity toward context. The increase of selectivity in the model is accompanied by an increase in binariness of the synaptic weights for cells that are part of the functional network.

Toward a unified model of face and object recognition in the human visual system

Our understanding of the mechanisms and neural substrates underlying visual recognition has made considerable progress over the past 30 years. During this period, accumulating evidence has led many scientists to conclude that objects and faces are recognised in fundamentally distinct ways, and in fundamentally distinct cortical areas. In the psychological literature, in particular, this dissociation has led to a palpable disconnect between theories of how we process and represent the two classes of object. This paper follows a trend in part of the recognition literature to try to reconcile what we know about these two forms of recognition by considering the effects of learning. Taking a widely accepted, self-organizing model of object recognition, this paper explains how such a system is affected by repeated exposure to specific stimulus classes. In so doing, it explains how many aspects of recognition generally regarded as unusual to faces (holistic processing, configural processing, sensitivity to inversion, the other-race effect, the prototype effect, etc.) are emergent properties of category-specific learning within such a system. Overall, the paper describes how a single model of recognition learning can and does produce the seemingly very different types of representation associated with faces and objects.

Hebbian mechanisms help explain development of multisensory integration in the superior colliculus: a neural network model

The superior colliculus (SC) integrates relevant sensory information (visual, auditory, somatosensory) from several cortical and subcortical structures, to program orientation responses to external events. However, this capacity is not present at birth, and it is acquired only through interactions with cross-modal events during maturation. Mathematical models provide a quantitative framework, valuable in helping to clarify the specific neural mechanisms underlying the maturation of the multisensory integration in the SC. We extended a neural network model of the adult SC (Cuppini et al., Front Integr Neurosci 4:1-15, 2010) to describe the development of this phenomenon starting from an immature state, based on known or suspected anatomy and physiology, in which: (1) AES afferents are present but weak, (2) Responses are driven from non-AES afferents, and (3) The visual inputs have a marginal spatial tuning. Sensory experience was modeled by repeatedly presenting modality-specific and cross-modal stimuli. Synapses in the network were modified by simple Hebbian learning rules. As a consequence of this exposure, (1) Receptive fields shrink and come into spatial register, and (2) SC neurons gained the adult characteristic integrative properties: enhancement, depression, and inverse effectiveness. Importantly, the unique architecture of the model guided the development so that integration became dependent on the relationship between the cortical input and the SC. Manipulations of the statistics of the experience during the development changed the integrative profiles of the neurons, and results matched well with the results of physiological studies.

The Neurodynamics of Cognition: A Tutorial on Computational Cognitive Neuroscience

Computational Cognitive Neuroscience (CCN) is a new field that lies at the intersection of computational neuroscience, machine learning, and neural network theory (i.e., connectionism). The ideal CCN model should not make any assumptions that are known to contradict the current neuroscience literature and at the same time provide good accounts of behavior and at least some neuroscience data (e.g., single-neuron activity, fMRI data). Furthermore, once set, the architecture of the CCN network and the models of each individual unit should remain fixed throughout all applications. Because of the greater weight they place on biological accuracy, CCN models differ substantially from traditional neural network models in how each individual unit is modeled, how learning is modeled, and how behavior is generated from the network. A variety of CCN solutions to these three problems are described. A real example of this approach is described, and some advantages and limitations of the CCN approach are discussed.

Organization, maturation, and plasticity of multisensory integration: insights from computational modeling studies

In this paper, we present two neural network models – devoted to two specific and widely investigated aspects of multisensory integration – in order to evidence the potentialities of computational models to gain insight into the neural mechanisms underlying organization, development, and plasticity of multisensory integration in the brain. The first model considers visual–auditory interaction in a midbrain structure named superior colliculus (SC). The model is able to reproduce and explain the main physiological features of multisensory integration in SC neurons and to describe how SC integrative capability – not present at birth – develops gradually during postnatal life depending on sensory experience with cross-modal stimuli. The second model tackles the problem of how tactile stimuli on a body part and visual (or auditory) stimuli close to the same body part are integrated in multimodal parietal neurons to form the perception of peripersonal (i.e., near) space. The model investigates how the extension of peripersonal space – where multimodal integration occurs – may be modified by experience such as use of a tool to interact with the far space. The utility of the modeling approach relies on several aspects: (i) The two models, although devoted to different problems and simulating different brain regions, share some common mechanisms (lateral inhibition and excitation, non-linear neuron characteristics, recurrent connections, competition, Hebbian rules of potentiation and depression) that may govern more generally the fusion of senses in the brain, and the learning and plasticity of multisensory integration. (ii) The models may help interpretation of behavioral and psychophysical responses in terms of neural activity and synaptic connections. (iii) The models can make testable predictions that can help guiding future experiments in order to validate, reject, or modify the main assumptions.