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Crippen TL, Kim D, Poole TL, Swiger SL, Anderson RC. The bacterial and archaeal communities of flies, manure, lagoons, and troughs at a working dairy. Front Microbiol 2024; 14:1327841. [PMID: 38449879 PMCID: PMC10915237 DOI: 10.3389/fmicb.2023.1327841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Accepted: 12/19/2023] [Indexed: 03/08/2024] Open
Abstract
Background Fundamental investigations into the location, load, and persistence of microbes, whether beneficial or detrimental, are scarce. Many questions about the retention and survival of microbes on various surfaces, as well as the load necessary for spread, exist. To answer these questions, we must know more about where to find various microbes and in what concentrations, the composition of the microbial communities, and the extent of dissemination between various elements. This study investigated the diversity, composition, and relative abundance of the communities associated with manure, lagoons, troughs, house flies, and stable flies present at a dairy, implementing two different free-stall management systems: flow-through and cross-vent. Shotgun metagenomics at the community level was used to compare the microbiomes within the dairy, allowing confident interpretation at the species level. Results The results showed that there were significant difference in microbial composition between not only each of the dairy elements but also management styles. The primary exceptions were the microbiomes of the house fly and the stable fly. Their compositions heavily overlapped with one another, but interestingly, not with the other components sampled. Additionally, both species of flies carried more pathogens than the other elements of the dairy, indicating that they may not share these organisms with the other components, or that the environments offered by the other components are unsatisfactory for the survival of some pathogens.. Conclusion The lack of overlapping pathogen profiles suggests a lack of transfer from flies to other dairy elements. Dairy health data, showing a low incidence of disease, suggests minimal sharing of bacteria by the flies at a level required for infection, given the health program of this dairy. While flies did carry a multitude of pathogenic bacteria, the mere presence of the bacteria associated with the flies did not necessarily translate into high risk leading to morbidity and mortality at this dairy. Thus, using flies as the sole sentinel of dairy health may not be appropriate for all bacterial pathogens or dairies.
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Affiliation(s)
- Tawni L. Crippen
- Southern Plains Agricultural Research Center, Agricultural Research Service, US Department of Agriculture, College Station, TX, United States
| | - Dongmin Kim
- Department of Entomology, Texas A & M University, College Station, TX, United States
| | - Toni L. Poole
- Southern Plains Agricultural Research Center, Agricultural Research Service, US Department of Agriculture, College Station, TX, United States
| | - Sonja L. Swiger
- Entomology Extension, Texas AgriLife, Texas A & M University, College Station, TX, United States
| | - Robin C. Anderson
- Southern Plains Agricultural Research Center, Agricultural Research Service, US Department of Agriculture, College Station, TX, United States
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Tufa TB, Margos G, Fingerle V, Hartberger C, Poppert S, Birtles RJ, Kraiczy P, Kempf VAJ, Frickmann H, Feldt T. Evidence for Bartonella quintana in Lice Collected from the Clothes of Ethiopian Homeless Individuals. Pathogens 2023; 12:1299. [PMID: 38003765 PMCID: PMC10675803 DOI: 10.3390/pathogens12111299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Revised: 10/19/2023] [Accepted: 10/29/2023] [Indexed: 11/26/2023] Open
Abstract
Human lice, Pediculus humanus, can transmit various pathogens, including Bartonella quintana, Borrelia recurrentis, and Rickettsia prowazekii. Xenosurveillance is an epidemiological approach to assessing human infection risks performed by screening vectors of infectious disease agents. In the proof-of-principle study reported herein, the DNA of 23 human lice was collected from the clothes of 30 homeless Ethiopian individuals. These samples were assessed using 16S rRNA gene-specific pan-eubacterial PCR for screening, followed by Bartonella genus 16S-23S internal transcribed spacer (ITS) sequence-specific PCR, Bartonella genus gltA gene-specific PCR, and 16S rRNA gene PCR with specificity for relapsing-fever-associated Borrelia spp. with subsequent sequencing of the amplicons. In one sample, the pan-eubacterial 16S rRNA gene-specific screening PCR, the Bartonella genus 16S-23S ITS sequence-specific PCR, and the Bartonella genus gltA gene-specific PCR allowed for the sequencing of B. quintana-specific amplicons. In two additional samples, Bartonella genus gltA gene-specific PCR also provided sequences showing 100% sequence identity with B. quintana. In total, 3/23 (13.0%) of the assessed lice were found to be positive for B. quintana. Correlating clinical data were not available; however, the assessment confirmed the presence of B. quintana in the local louse population and thus an associated infection pressure. Larger-sized cross-sectional studies seem advisable to more reliably quantify the infection risk of lice-infested local individuals. The need for prevention by providing opportunities to maintain standard hygiene for Ethiopian homeless individuals is stressed by the reported findings, especially in light of the ongoing migration of refugees.
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Affiliation(s)
- Tafese Beyene Tufa
- Asella Teaching and Referral Hospital, College of Health Sciences, Arsi University, Asella P.O. Box 04, Ethiopia;
- Hirsch Institute of Tropical Medicine (HITM), Heinrich-Heine University, Asella P.O. Box 04, Ethiopia
- Department of Gastroenterology, Hepatology and Infectious Diseases, University Medical Center Düsseldorf, 40225 Düsseldorf, Germany
| | - Gabriele Margos
- National Reference Center for Borrelia, Bavarian Health and Food Safety Authority (LGL), Branch Oberschleißheim, 85764 Oberschleißheim, Germany; (G.M.); (V.F.); (C.H.)
| | - Volker Fingerle
- National Reference Center for Borrelia, Bavarian Health and Food Safety Authority (LGL), Branch Oberschleißheim, 85764 Oberschleißheim, Germany; (G.M.); (V.F.); (C.H.)
| | - Christine Hartberger
- National Reference Center for Borrelia, Bavarian Health and Food Safety Authority (LGL), Branch Oberschleißheim, 85764 Oberschleißheim, Germany; (G.M.); (V.F.); (C.H.)
| | - Sven Poppert
- Diagnostic Department, Bernhard Nocht Institute for Tropical Medicine Hamburg, 20239 Hamburg, Germany;
| | - Richard J. Birtles
- School of Science, Engineering and Environment, University of Salford, Salford M5 4WT, UK;
| | - Peter Kraiczy
- Institute for Medical Microbiology and Infection Control and Consiliary Laboratory for Bartonella Infections (Appointed by the Robert Koch Institute), University Hospital, Goethe University Frankfurt, 60596 Frankfurt am Main, Germany; (P.K.); (V.A.J.K.)
| | - Volkhard A. J. Kempf
- Institute for Medical Microbiology and Infection Control and Consiliary Laboratory for Bartonella Infections (Appointed by the Robert Koch Institute), University Hospital, Goethe University Frankfurt, 60596 Frankfurt am Main, Germany; (P.K.); (V.A.J.K.)
| | - Hagen Frickmann
- Department of Microbiology and Hospital Hygiene, Bundeswehr Hospital Hamburg, 20359 Hamburg, Germany
- Institute for Medical Microbiology, Virology and Hygiene, University Medicine Rostock, 18057 Rostock, Germany
| | - Torsten Feldt
- Hirsch Institute of Tropical Medicine (HITM), Heinrich-Heine University, Asella P.O. Box 04, Ethiopia
- Department of Gastroenterology, Hepatology and Infectious Diseases, University Medical Center Düsseldorf, 40225 Düsseldorf, Germany
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Mwakasungula S, Rougeron V, Arnathau C, Boundenga L, Miguel E, Boissière A, Jiolle D, Durand P, Msigwa A, Mswata S, Olotu A, Sterkers Y, Roche B, Killeen G, Cerqueira F, Bitome‐Essono PY, Bretagnolle F, Masanja H, Paupy C, Sumaye R, Prugnolle F. Using haematophagous fly blood meals to study the diversity of blood-borne pathogens infecting wild mammals. Mol Ecol Resour 2022; 22:2915-2927. [PMID: 35730337 PMCID: PMC9796008 DOI: 10.1111/1755-0998.13670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Revised: 04/25/2022] [Accepted: 05/17/2022] [Indexed: 12/30/2022]
Abstract
Many emerging infectious diseases originate from wild animals, so there is a profound need for surveillance and monitoring of their pathogens. However, the practical difficulty of sample acquisition from wild animals tends to limit the feasibility and effectiveness of such surveys. Xenosurveillance, using blood-feeding invertebrates to obtain tissue samples from wild animals and then detect their pathogens, is a promising method to do so. Here, we describe the use of tsetse fly blood meals to determine (directly through molecular diagnostic and indirectly through serology), the diversity of circulating blood-borne pathogens (including bacteria, viruses and protozoa) in a natural mammalian community of Tanzania. Molecular analyses of captured tsetse flies (182 pools of flies totalizing 1728 flies) revealed that the blood meals obtained came from 18 different vertebrate species including 16 non-human mammals, representing approximately 25% of the large mammal species present in the study area. Molecular diagnostic demonstrated the presence of different protozoa parasites and bacteria of medical and/or veterinary interest. None of the six virus species searched for by molecular methods were detected but an ELISA test detected antibodies against African swine fever virus among warthogs, indicating that the virus had been circulating in the area. Sampling of blood-feeding insects represents an efficient and practical approach to tracking a diversity of pathogens from multiple mammalian species, directly through molecular diagnostic or indirectly through serology, which could readily expand and enhance our understanding of the ecology and evolution of infectious agents and their interactions with their hosts in wild animal communities.
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Affiliation(s)
- Solomon Mwakasungula
- Department of Environmental Health and Ecological SciencesIfakara Health InstituteIfakaraTanzania
| | - Virginie Rougeron
- Laboratoire MIVEGEC (Université de Montpellier‐CNRS‐IRD)MontpellierFrance,IRL REHABSNelson Mandela UniversityGeorgeSouth Africa
| | - Céline Arnathau
- Laboratoire MIVEGEC (Université de Montpellier‐CNRS‐IRD)MontpellierFrance
| | - Larson Boundenga
- Centre Interdisciplinaire de Recherches de FrancevilleFrancevilleGabon,Department of AnthropologyDurham UniversityDurhamUK
| | - Eve Miguel
- Laboratoire MIVEGEC (Université de Montpellier‐CNRS‐IRD)MontpellierFrance
| | - Anne Boissière
- Laboratoire MIVEGEC (Université de Montpellier‐CNRS‐IRD)MontpellierFrance,UMR CIRAD‐INRA ASTRECIRADMontpellierFrance
| | - Davy Jiolle
- Laboratoire MIVEGEC (Université de Montpellier‐CNRS‐IRD)MontpellierFrance
| | - Patrick Durand
- Laboratoire MIVEGEC (Université de Montpellier‐CNRS‐IRD)MontpellierFrance,IRL REHABSNelson Mandela UniversityGeorgeSouth Africa
| | - Alphonce Msigwa
- Tanzania National ParksBurigi‐Chato National ParkBiharamuloTanzania
| | - Sarah Mswata
- Department of Environmental Health and Ecological SciencesIfakara Health InstituteIfakaraTanzania
| | - Ally Olotu
- Department of Environmental Health and Ecological SciencesIfakara Health InstituteIfakaraTanzania
| | - Yvon Sterkers
- Laboratoire MIVEGEC (Université de Montpellier‐CNRS‐IRD)MontpellierFrance
| | - Benjamin Roche
- Laboratoire MIVEGEC (Université de Montpellier‐CNRS‐IRD)MontpellierFrance
| | - Gerard Killeen
- Department of Environmental Health and Ecological SciencesIfakara Health InstituteIfakaraTanzania,School of Biological, Earth & Environmental Sciences and Environmental Research InstituteUniversity College CorkCorkIreland
| | - Frédérique Cerqueira
- Plateforme Génotypage – SéquençageInstitut des Sciences de l'Evolution, Université de Montpellier, CNRS, IRD, EPHEMontpellierFrance
| | | | | | - Honorati Masanja
- Department of Environmental Health and Ecological SciencesIfakara Health InstituteIfakaraTanzania
| | - Christophe Paupy
- Laboratoire MIVEGEC (Université de Montpellier‐CNRS‐IRD)MontpellierFrance
| | - Robert Sumaye
- Department of Environmental Health and Ecological SciencesIfakara Health InstituteIfakaraTanzania
| | - Franck Prugnolle
- Laboratoire MIVEGEC (Université de Montpellier‐CNRS‐IRD)MontpellierFrance,IRL REHABSNelson Mandela UniversityGeorgeSouth Africa
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Roundy CM, Hamer SA, Zecca IB, Davila EB, Auckland LD, Tang W, Gavranovic H, Swiger SL, Tomberlin JK, Fischer RSB, Pauvolid-Corrêa A, Hamer GL. No Evidence of SARS-CoV-2 Among Flies or Cockroaches in Households Where COVID-19 Positive Cases Resided. J Med Entomol 2022; 59:1479-1483. [PMID: 35640635 PMCID: PMC9278844 DOI: 10.1093/jme/tjac055] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Indexed: 06/15/2023]
Abstract
Flies and other arthropods mechanically transmit multiple pathogens and a recent experimental study demonstrated house flies, Musca domestica L. (Diptera: Muscidae), can mechanically transmit SARS-CoV-2. The purpose of this study was to explore the possibility of mechanical transmission of SARS-CoV-2 by domestic insects and their potential as a xenosurveillance tool for detection of the virus. Flies were trapped in homes where at least one confirmed human COVID-19 case(s) resided using sticky and liquid-baited fly traps placed inside and outside the home in the Texas counties of Brazos, Bell, and Montgomery, from June to September 2020. Flies from sticky traps were identified, pooled by taxa, homogenized, and tested for the presence of SARS-CoV-2 RNA using quantitative reverse transcription PCR (RT-qPCR). Liquid traps were drained, and the collected fluid similarly tested after RNA concentration. We processed the contents of 133 insect traps from 40 homes, which contained over 1,345 individual insects of 11 different Diptera families and Blattodea. These individuals were grouped into 243 pools, and all tested negative for SARS-CoV-2 RNA. Fourteen traps in seven homes were deployed on the day that cat or dog samples tested positive for SARS-CoV-2 RNA by nasal, oral, body, or rectal samples. This study presents evidence that biting and nonbiting flies and cockroaches (Blattodea) are not likely to contribute to mechanical transmission of SARS-CoV-2 or be useful in xenosurveillance for SARS-CoV-2.
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Affiliation(s)
| | - Sarah A Hamer
- College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX 77843, USA
| | - Italo B Zecca
- College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX 77843, USA
| | - Edward B Davila
- College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX 77843, USA
| | - Lisa D Auckland
- College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX 77843, USA
| | - Wendy Tang
- Department of Entomology, Texas A&M University and AgriLife Research, College Station, TX 77843, USA
| | - Haley Gavranovic
- Department of Entomology, Texas A&M University and AgriLife Research, College Station, TX 77843, USA
| | - Sonja L Swiger
- Department of Entomology, Texas A&M University and AgriLife Research, College Station, TX 77843, USA
| | - Jeffery K Tomberlin
- Department of Entomology, Texas A&M University and AgriLife Research, College Station, TX 77843, USA
| | - Rebecca S B Fischer
- School of Public Health, Texas A&M University, College Station, TX 77843, USA
| | - Alex Pauvolid-Corrêa
- College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX 77843, USA
- Laboratory of Respiratory Viruses and Measles, SARS-CoV-2 National Reference Laboratory and Regional Reference Laboratory in the Americas (PAHO/WHO), Fiocruz, Rio de Janeiro, 21040-360, Brazil
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Batson J, Dudas G, Haas-Stapleton E, Kistler AL, Li LM, Logan P, Ratnasiri K, Retallack H. Single mosquito metatranscriptomics identifies vectors, emerging pathogens and reservoirs in one assay. eLife 2021; 10:e68353. [PMID: 33904402 PMCID: PMC8110308 DOI: 10.7554/elife.68353] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Accepted: 04/09/2021] [Indexed: 12/22/2022] Open
Abstract
Mosquitoes are major infectious disease-carrying vectors. Assessment of current and future risks associated with the mosquito population requires knowledge of the full repertoire of pathogens they carry, including novel viruses, as well as their blood meal sources. Unbiased metatranscriptomic sequencing of individual mosquitoes offers a straightforward, rapid, and quantitative means to acquire this information. Here, we profile 148 diverse wild-caught mosquitoes collected in California and detect sequences from eukaryotes, prokaryotes, 24 known and 46 novel viral species. Importantly, sequencing individuals greatly enhanced the value of the biological information obtained. It allowed us to (a) speciate host mosquito, (b) compute the prevalence of each microbe and recognize a high frequency of viral co-infections, (c) associate animal pathogens with specific blood meal sources, and (d) apply simple co-occurrence methods to recover previously undetected components of highly prevalent segmented viruses. In the context of emerging diseases, where knowledge about vectors, pathogens, and reservoirs is lacking, the approaches described here can provide actionable information for public health surveillance and intervention decisions.
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Affiliation(s)
| | - Gytis Dudas
- Gothenburg Global Biodiversity CentreGothenburgSweden
| | | | | | - Lucy M Li
- Chan Zuckerberg BiohubSan FranciscoUnited States
| | | | - Kalani Ratnasiri
- Program in Immunology, Stanford University School of MedicineStanfordUnited States
| | - Hanna Retallack
- Department of Biochemistry and Biophysics, University of California San FranciscoSan FranciscoUnited States
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Chilton NB, Dergousoff SJ, Brzezowska V, Trost CN, Dunlop DR. American Dog Ticks (Dermacentor variabilis) as Biological Indicators of an Association between the Enteric Bacterium Moellerella wisconsensis and Striped Skunks (Mephitis mephitis) in Southwestern Manitoba, Canada. J Wildl Dis 2020; 56:918-21. [PMID: 32402233 DOI: 10.7589/2019-09-224] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2019] [Accepted: 02/22/2020] [Indexed: 11/20/2022]
Abstract
Total genomic (g)DNA from 100 American dog ticks (Dermacentor variabilis) collected from humans, dogs, raccoons, and skunks near Minnedosa (Manitoba, Canada) in 2005 was tested for the presence of Moellerella wisconsensis (Gammaproteobacteria: Enterobacteriales) using PCR. Although two gDNA samples derived from ticks attached to two striped skunks (Mephitis mephitis) contained M. wisconsensis DNA, it is unlikely that D. variabilis is a vector of this bacterium. Genomic DNA prepared from the washes of the external surfaces of these two ticks (i.e., before DNA extraction from the whole tick) and another two ticks attached to same skunks were also PCR positive for M. wisconsensis. This suggests that ticks acquired the bacterium by physical contact with contaminated or infected skunks. However, it does not exclude the possibility that the ticks may have also imbibed the bacterium from their host blood and lymph. Nonetheless, the results of this molecular study suggest that the four adult D. variabilis represent biological indicators of the presence of M. wisconsensis in association with their vertebrate hosts (i.e., striped skunks). Additional work is needed to determine if M. wisconsensis is present in the blood and lymph of striped skunks in southwestern Manitoba and if there are potential health risks for persons coming into contact with infected animals.
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Tomazatos A, Jansen S, Pfister S, Török E, Maranda I, Horváth C, Keresztes L, Spînu M, Tannich E, Jöst H, Schmidt-Chanasit J, Cadar D, Lühken R. Ecology of West Nile Virus in the Danube Delta, Romania: Phylogeography, Xenosurveillance and Mosquito Host-Feeding Patterns. Viruses 2019; 11:v11121159. [PMID: 31847345 PMCID: PMC6950446 DOI: 10.3390/v11121159] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2019] [Revised: 12/07/2019] [Accepted: 12/11/2019] [Indexed: 12/19/2022] Open
Abstract
The ecology of West Nile virus (WNV) in the Danube Delta Biosphere Reserve (Romania) was investigated by combining studies on the virus genetics, phylogeography, xenosurveillance and host-feeding patterns of mosquitoes. Between 2014 and 2016, 655,667 unfed and 3842 engorged mosquito females were collected from four sampling sites. Blood-fed mosquitoes were negative for WNV-RNA, but two pools of unfed Culex pipiens s.l./torrentium collected in 2014 were tested positive. Our results suggest that Romania experienced at least two separate WNV lineage 2 introductions: from Africa into Danube Delta and from Greece into south-eastern Romania in the 1990s and early 2000s, respectively. The genetic diversity of WNV in Romania is primarily shaped by in situ evolution. WNV-specific antibodies were detected for 19 blood-meals from dogs and horses, but not from birds or humans. The hosts of mosquitoes were dominated by non-human mammals (19 species), followed by human and birds (23 species). Thereby, the catholic host-feeding pattern of Culex pipiens s.l./torrentium with a relatively high proportion of birds indicates the species’ importance as a potential bridge vector. The low virus prevalence in combination with WNV-specific antibodies indicate continuous, but low activity of WNV in the Danube Delta during the study period.
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Affiliation(s)
- Alexandru Tomazatos
- Bernhard Nocht Institute for Tropical Medicine, WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, 20359 Hamburg, Germany; (A.T.); (S.J.); (I.M.); (E.T.); (H.J.)
| | - Stephanie Jansen
- Bernhard Nocht Institute for Tropical Medicine, WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, 20359 Hamburg, Germany; (A.T.); (S.J.); (I.M.); (E.T.); (H.J.)
| | | | - Edina Török
- “Lendület” Landscape and Conservation Ecology, Institute of Ecology and Botany, MTA Centre for Ecological Research, 2163 Vácrátót, Hungary;
| | - Iulia Maranda
- Bernhard Nocht Institute for Tropical Medicine, WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, 20359 Hamburg, Germany; (A.T.); (S.J.); (I.M.); (E.T.); (H.J.)
| | - Cintia Horváth
- Department of Clinical Sciences-Infectious Diseases, University of Agricultural Sciences and Veterinary Medicine, 400372 Cluj-Napoca, Romania (M.S.)
| | - Lujza Keresztes
- Center of Systems Biology, Biodiversity and Bioresources, Faculty of Biology and Geology, Babeș-Bolyai University, 400372 Cluj Napoca, Romania;
| | - Marina Spînu
- Department of Clinical Sciences-Infectious Diseases, University of Agricultural Sciences and Veterinary Medicine, 400372 Cluj-Napoca, Romania (M.S.)
| | - Egbert Tannich
- Bernhard Nocht Institute for Tropical Medicine, WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, 20359 Hamburg, Germany; (A.T.); (S.J.); (I.M.); (E.T.); (H.J.)
- German Centre for Infection Research (DZIF), partner site Hamburg-Luebeck-Borstel-Riems, 20359 Hamburg, Germany
| | - Hanna Jöst
- Bernhard Nocht Institute for Tropical Medicine, WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, 20359 Hamburg, Germany; (A.T.); (S.J.); (I.M.); (E.T.); (H.J.)
| | - Jonas Schmidt-Chanasit
- Bernhard Nocht Institute for Tropical Medicine, WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, 20359 Hamburg, Germany; (A.T.); (S.J.); (I.M.); (E.T.); (H.J.)
- Faculty of Mathematics, Informatics and Natural Sciences, Universität Hamburg, 20148 Hamburg, Germany
| | - Daniel Cadar
- Bernhard Nocht Institute for Tropical Medicine, WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, 20359 Hamburg, Germany; (A.T.); (S.J.); (I.M.); (E.T.); (H.J.)
| | - Renke Lühken
- Bernhard Nocht Institute for Tropical Medicine, WHO Collaborating Centre for Arbovirus and Hemorrhagic Fever Reference and Research, 20359 Hamburg, Germany; (A.T.); (S.J.); (I.M.); (E.T.); (H.J.)
- Faculty of Mathematics, Informatics and Natural Sciences, Universität Hamburg, 20148 Hamburg, Germany
- Correspondence:
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Brinkmann A, Nitsche A, Kohl C. Viral Metagenomics on Blood-Feeding Arthropods as a Tool for Human Disease Surveillance. Int J Mol Sci 2016; 17:E1743. [PMID: 27775568 DOI: 10.3390/ijms17101743] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2016] [Revised: 10/07/2016] [Accepted: 10/11/2016] [Indexed: 11/17/2022] Open
Abstract
Surveillance and monitoring of viral pathogens circulating in humans and wildlife, together with the identification of emerging infectious diseases (EIDs), are critical for the prediction of future disease outbreaks and epidemics at an early stage. It is advisable to sample a broad range of vertebrates and invertebrates at different temporospatial levels on a regular basis to detect possible candidate viruses at their natural source. However, virus surveillance systems can be expensive, costly in terms of finances and resources and inadequate for sampling sufficient numbers of different host species over space and time. Recent publications have presented the concept of a new virus surveillance system, coining the terms "flying biological syringes", "xenosurveillance" and "vector-enabled metagenomics". According to these novel and promising surveillance approaches, viral metagenomics on engorged mosquitoes might reflect the viral diversity of numerous mammals, birds and humans, combined in the mosquitoes' blood meal during feeding on the host. In this review article, we summarize the literature on vector-enabled metagenomics (VEM) techniques and its application in disease surveillance in humans. Furthermore, we highlight the combination of VEM and "invertebrate-derived DNA" (iDNA) analysis to identify the host DNA within the mosquito midgut.
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9
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Valentin RE, Maslo B, Lockwood JL, Pote J, Fonseca DM. Real-time PCR assay to detect brown marmorated stink bug, Halyomorpha halys (Stål), in environmental DNA. Pest Manag Sci 2016; 72:1854-1861. [PMID: 26732613 DOI: 10.1002/ps.4217] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2015] [Revised: 12/15/2015] [Accepted: 12/20/2015] [Indexed: 06/05/2023]
Abstract
BACKGROUND Early detection before establishment and identification of key predators are time-honored strategies towards effective eradication or control of invasive species. The brown marmorated stink bug (BMSB), Halyomorpha halys, is a recent exotic pest of several important crops in North America and Europe. Resulting widespread applications of insecticides have countered years of careful integrated pest management and are leading to the resurgence of other agricultural pests. Environmental DNA (eDNA) has been used effectively to detect aquatic invasives. RESULTS We developed a real-time PCR (qPCR) assay for BMSB in a conserved region of the ribosomal DNA interspacer 1 (ITS1). We validated this assay on worldwide populations of BMSB and tested its specificity and sensitivity against other US Pentatomidae species and on guano of big brown bat, Eptesicus fuscus, which we confirmed is a BMSB predator in New Jersey. We also detected BMSB DNA after rapid (and inexpensive) HotSHOT DNA extractions of soiled paper from cages briefly holding BMSB, as well as from discarded exuviae. CONCLUSION Given the high sensitivity of our assay to BMSB environmental DNA (eDNA) in terrestrial samples, this tool should become a cost-effective approach for using eDNA to detect terrestrial invasive species and their key predators. © 2016 Society of Chemical Industry.
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Affiliation(s)
- Rafael E Valentin
- Department of Ecology, Evolution and Natural Resources and the Graduate Program in Ecology and Evolution, Rutgers, the State University of New Jersey, New Brunswick, NJ, USA
| | - Brooke Maslo
- Department of Ecology, Evolution and Natural Resources and the Graduate Program in Ecology and Evolution, Rutgers, the State University of New Jersey, New Brunswick, NJ, USA
- Rutgers Cooperative Extension, New Jersey Agricultural Experiment Station, Rutgers, the State University of New Jersey, New Brunswick, NJ, USA
| | - Julie L Lockwood
- Department of Ecology, Evolution and Natural Resources and the Graduate Program in Ecology and Evolution, Rutgers, the State University of New Jersey, New Brunswick, NJ, USA
| | - John Pote
- Department of Entomology, Rutgers, The State University of New Jersey, New Brunswick, NJ, USA
| | - Dina M Fonseca
- Department of Ecology, Evolution and Natural Resources and the Graduate Program in Ecology and Evolution, Rutgers, the State University of New Jersey, New Brunswick, NJ, USA
- Rutgers Cooperative Extension, New Jersey Agricultural Experiment Station, Rutgers, the State University of New Jersey, New Brunswick, NJ, USA
- Department of Entomology, Rutgers, The State University of New Jersey, New Brunswick, NJ, USA
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