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Zheng XJ, Yu ZW, Zhang YL, Shi Y. [Effects of nitrogen application rate on light interception and dry matter distribution at diffe-rent layers in wheat canopy under supplemental irrigation based on measuring soil moisture.]. YING YONG SHENG TAI XUE BAO = THE JOURNAL OF APPLIED ECOLOGY 2018; 29:531-537. [PMID: 29692068 DOI: 10.13287/j.1001-9332.201802.024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
With the large-spike wheat cultivar Shannong 23 as test material,a field experiment was conducted by increasing the relative soil moisture content to 70% and 65% at jointing and anthesis stages. Four nitrogen levels,0 (N0), 180 (N1), 240 (N2) and 300 kg·hm-2(N3), were designed to examine the effects of nitrogen application rates on the interception of photosynthetic active radiation (PAR) and dry matter distribution of wheat at different canopy layers. The results showed that the total stem number of wheat population at anthesis stage, the leaf area index at 10, 20 and 30 days after anthesis, PAR capture ratio at upper and middle layers and total PAR capture ratio in wheat canopy on day 20 after anthesis of treatment N2 were significantly higher than those in the treatments of both N0 and N1. Those indexes showed no significant increase when the application rate increased to 300 kg·hm-2(N3). The vegetative organ dry matter accumulation of all layers at maturity stage of treatment N2 were significantly higher than N0 and N1. Compared with treatment N0 and N1, N2 increased the grain and total dry matter accumulation by 36.7% and 35.4%, 9.5% and 10.2%, respectively, but had no significant difference with treatment N3. The vegetative organ dry matter accumulation at all layers, grain and total dry matter accumulation were significantly and positively correlated with PAR capture ratio at upper and middle layers, and had no significant correlation with that at lower layer. The vegetative organ dry matter accumulation at all layers was significantly and positively correlated with grain dry matter accumulation. The application rate at 240 kg·hm-2(N2) would be the optimum treatment under the present experimental condition.
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Zhao A, Liu L, Xu T, Shi L, Xie W, Zhang W, Fu S, Feng H, Chen B. Influences of Canopy Nitrogen and Water Addition on AM Fungal Biodiversity and Community Composition in a Mixed Deciduous Forest of China. FRONTIERS IN PLANT SCIENCE 2018; 9:1842. [PMID: 30619411 PMCID: PMC6297361 DOI: 10.3389/fpls.2018.01842] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Accepted: 11/27/2018] [Indexed: 05/17/2023]
Abstract
Nitrogen (N) deposition and precipitation could profoundly influence the structure and function of forest ecosystems. However, conventional studies with understory additions of nitrogen and water largely ignored canopy-associated ecological processes and may have not accurately reflected the natural situations. Additionally, most studies only made sampling at one time point, overlooked temporal dynamics of ecosystem response to environmental changes. Here we carried out a field trial in a mixed deciduous forest of China with canopy addition of N and water for 4 years to investigate the effects of increased N deposition and precipitation on the diversity and community composition of arbuscular mycorrhizal (AM) fungi, the ubiquitous symbiotic fungi for the majority of terrestrial plants. We found that (1) in the 1st year, N addition, water addition and their interactions all exhibited significant influences on AM fungal community composition; (2) in the 2nd year, only water addition significantly reduced AM fungal alpha-diversity (richness and Shannon index); (3) in the next 2 years, both N addition and water addition showed no significant effect on AM fungal community composition or alpha-diversity, with an exception that water addition significantly changed AM fungal community composition in the 4th year; (4) the increment of N or water tended to decrease the abundance and richness of the dominant genus Glomus and favored other AM fungi. (5) soil pH was marginally positively related with AM fungal community composition dissimilarity, soil NH4 +-N and N/P showed significant/marginal positive correlation with AM fungal alpha-diversity. We concluded that the effect of increased N deposition and precipitation on AM fungal community composition was time-dependent, mediated by soil factors, and possibly related to the sensitivity and resilience of forest ecosystem to environmental changes.
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Aduse‐Poku K, Molleman F, Oduro W, Oppong SK, Lohman DJ, Etienne RS. Relative contribution of neutral and deterministic processes in shaping fruit-feeding butterfly assemblages in Afrotropical forests. Ecol Evol 2018; 8:296-308. [PMID: 29321872 PMCID: PMC5756852 DOI: 10.1002/ece3.3618] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2017] [Revised: 10/03/2017] [Accepted: 10/08/2017] [Indexed: 11/13/2022] Open
Abstract
The unified neutral theory of biodiversity and biogeography has gained the status of a quantitative null model for explaining patterns in ecological (meta)communities. The theory assumes that individuals of trophically similar species are functionally equivalent. We empirically evaluate the relative contribution of neutral and deterministic processes in shaping fruit-feeding butterfly assemblages in three tropical forests in Africa, using both direct (confronting the neutral model with species abundance data) and indirect approaches (testing the predictions of neutral theory using data other than species abundance distributions). Abundance data were obtained by sampling butterflies using banana baited traps set at the forest canopy and understorey strata. Our results indicate a clear consistency in the kind of species or species groups observed at either the canopy or understorey in the three studied communities. Furthermore, we found significant correlation between some flight-related morphological traits and species abundance at the forest canopy, but not at the understorey. Neutral theory's contribution to explaining our data lies largely in identifying dispersal limitation as a key process regulating fruit-feeding butterfly community structure. Our study illustrates that using species abundance data alone in evaluating neutral theory can be informative, but is insufficient. Species-level information such as habitat preference, host plants, geographical distribution, and phylogeny is essential in elucidating the processes that regulate biodiversity community structures and patterns.
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Song Q, Wang Y, Qu M, Ort DR, Zhu X. The impact of modifying photosystem antenna size on canopy photosynthetic efficiency-Development of a new canopy photosynthesis model scaling from metabolism to canopy level processes. PLANT, CELL & ENVIRONMENT 2017; 40:2946-2957. [PMID: 28755407 PMCID: PMC5724688 DOI: 10.1111/pce.13041] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2017] [Revised: 07/09/2017] [Accepted: 07/12/2017] [Indexed: 05/18/2023]
Abstract
Canopy photosynthesis (Ac ) describes photosynthesis of an entire crop field and the daily and seasonal integrals of Ac positively correlate with daily and seasonal biomass production. Much effort in crop breeding has focused on improving canopy architecture and hence light distribution inside the canopy. Here, we develop a new integrated canopy photosynthesis model including canopy architecture, a ray tracing algorithm, and C3 photosynthetic metabolism to explore the option of manipulating leaf chlorophyll concentration ([Chl]) for greater Ac and nitrogen use efficiency (NUE). Model simulation results show that (a) efficiency of photosystem II increased when [Chl] was decreased by decreasing antenna size and (b) the light received by leaves at the bottom layers increased when [Chl] throughout the canopy was decreased. Furthermore, the modelling revealed a modest ~3% increase in Ac and an ~14% in NUE was accompanied when [Chl] reduced by 60%. However, if the leaf nitrogen conserved by this decrease in leaf [Chl] were to be optimally allocated to other components of photosynthesis, both Ac and NUE can be increased by over 30%. Optimizing [Chl] coupled with strategic reinvestment of conserved nitrogen is shown to have the potential to support substantial increases in Ac , biomass production, and crop yields.
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Rusjan D, Mikulic-Petkovsek M. Double maturation raisonnée: the impact of on-vine berry dehydration on the berry and wine composition of Merlot (Vitis vinifera L.). JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2017; 97:4835-4846. [PMID: 28382623 DOI: 10.1002/jsfa.8354] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2016] [Revised: 03/31/2017] [Accepted: 03/31/2017] [Indexed: 06/07/2023]
Abstract
BACKGROUND Double maturation raisonnée (DMR) is a potential canopy measure that affects grape and wine composition. The aim of this work was to study for the first time the DMR impact on the physical, biochemical and sensorial characteristics of the berries and wines of Merlot, one of the world's fastest-expanding grapevine varieties. RESULTS DMR significantly increased the content of soluble solids (1.2-fold), free amino nitrogen (1.8-fold) and acidity in berries but decreased the weight of 100 berries on harvest (approx. 28%). Irrespective of the vintage, DMR-treated grapes had a significantly higher content of non-astringent tannins (0.73-0.78 mg L-1 ) and anthocyanin extractability (34.7-36.4%) but a lower index of astringency (31.2-33.7) when compared to the control. Consequently, the DMR wines achieved higher alcohol, total acidity and extract, hydroxycinnamic acids, flavanol and flavonol contents, whereas the content of anthocyanins was similar to that of the control. Sensorial evaluation showed that DMR wines were not rated higher and would not be appreciated more than control wines. CONCLUSION Changes in berries during DMR altered the wine characteristics only in terms of primary metabolites. A reduced accumulation of phenolics, especially anthocyanin content, in the berry skin of DMR-treated grapes was not reflected in their presence in wines. To the best of our knowledge, this is the first paper that has reported an impact of DMR on the grape and wine composition of Merlot, as one of the most promising red varieties. © 2017 Society of Chemical Industry.
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Fauset S, Gloor MU, Aidar MPM, Freitas HC, Fyllas NM, Marabesi MA, Rochelle ALC, Shenkin A, Vieira SA, Joly CA. Tropical forest light regimes in a human-modified landscape. Ecosphere 2017; 8:e02002. [PMID: 29263939 PMCID: PMC5731677 DOI: 10.1002/ecs2.2002] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2017] [Accepted: 10/02/2017] [Indexed: 11/24/2022] Open
Abstract
Light is the key energy input for all vegetated systems. Forest light regimes are complex, with the vertical pattern of light within canopies influenced by forest structure. Human disturbances in tropical forests impact forest structure and hence may influence the light environment and thus competitiveness of different trees. In this study, we measured vertical diffuse light profiles along a gradient of anthropogenic disturbance, sampling intact, logged, secondary, and fragmented sites in the biodiversity hot spot of the Atlantic forest, southeast Brazil, using photosynthetically active radiation sensors and a novel approach with estimations of vertical light profiles from hemispherical photographs. Our results show clear differences in vertical light profiles with disturbance: Fragmented forests are characterized by rapid light extinction within their low canopies, while the profiles in logged forests show high heterogeneity and high light in the mid-canopy despite decades of recovery. The secondary forest showed similar light profiles to intact forest, but with a lower canopy height. We also show that in some cases the upper canopy layer and heavy liana infestations can severely limit light penetration. Light extinction with height above the ground and depth below the canopy top was highest in fragmented forest and negatively correlated with canopy height. The novel, inexpensive, and rapid methods described here can be applied to other sites to quantify rarely measured vertical light profiles.
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Rahman MA, LaPierre N, Rangwala H, Barbara D. Metagenome sequence clustering with hash-based canopies. J Bioinform Comput Biol 2017; 15:1740006. [PMID: 29113561 DOI: 10.1142/s0219720017400066] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Metagenomics is the collective sequencing of co-existing microbial communities which are ubiquitous across various clinical and ecological environments. Due to the large volume and random short sequences (reads) obtained from community sequences, analysis of diversity, abundance and functions of different organisms within these communities are challenging tasks. We present a fast and scalable clustering algorithm for analyzing large-scale metagenome sequence data. Our approach achieves efficiency by partitioning the large number of sequence reads into groups (called canopies) using hashing. These canopies are then refined by using state-of-the-art sequence clustering algorithms. This canopy-clustering (CC) algorithm can be used as a pre-processing phase for computationally expensive clustering algorithms. We use and compare three hashing schemes for canopy construction with five popular and state-of-the-art sequence clustering methods. We evaluate our clustering algorithm on synthetic and real-world 16S and whole metagenome benchmarks. We demonstrate the ability of our proposed approach to determine meaningful Operational Taxonomic Units (OTU) and observe significant speedup with regards to run time when compared to different clustering algorithms. We also make our source code publicly available on Github. a.
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De Guzman ME, Santiago LS, Schnitzer SA, Álvarez-Cansino L. Trade-offs between water transport capacity and drought resistance in neotropical canopy liana and tree species. TREE PHYSIOLOGY 2017; 37:1404-1414. [PMID: 27672189 DOI: 10.1093/treephys/tpw086] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2016] [Accepted: 08/04/2016] [Indexed: 06/06/2023]
Abstract
In tropical forest canopies, it is critical for upper shoots to efficiently provide water to leaves for physiological function while safely preventing loss of hydraulic conductivity due to cavitation during periods of soil water deficit or high evaporative demand. We compared hydraulic physiology of upper canopy trees and lianas in a seasonally dry tropical forest to test whether trade-offs between safety and efficiency of water transport shape differences in hydraulic function between these two major tropical woody growth forms. We found that lianas showed greater maximum stem-specific hydraulic conductivity than trees, but lost hydraulic conductivity at less negative water potentials than trees, resulting in a negative correlation and trade-off between safety and efficiency of water transport. Lianas also exhibited greater diurnal changes in leaf water potential than trees. The magnitude of diurnal water potential change was negatively correlated with sapwood capacitance, indicating that lianas are highly reliant on conducting capability to maintain leaf water status, whereas trees relied more on stored water in stems to maintain leaf water status. Leaf nitrogen concentration was related to maximum leaf-specific hydraulic conductivity only for lianas suggesting that greater water transport capacity is more tied to leaf processes in lianas compared to trees. Our results are consistent with a trade-off between safety and efficiency of water transport and may have implications for increasing liana abundance in neotropical forests.
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Xavier A, Hall B, Hearst AA, Cherkauer KA, Rainey KM. Genetic Architecture of Phenomic-Enabled Canopy Coverage in Glycine max. Genetics 2017; 206:1081-1089. [PMID: 28363978 PMCID: PMC5499164 DOI: 10.1534/genetics.116.198713] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2016] [Accepted: 03/03/2017] [Indexed: 12/25/2022] Open
Abstract
Digital imagery can help to quantify seasonal changes in desirable crop phenotypes that can be treated as quantitative traits. Because limitations in precise and functional phenotyping restrain genetic improvement in the postgenomic era, imagery-based phenomics could become the next breakthrough to accelerate genetic gains in field crops. Whereas many phenomic studies focus on exploratory analysis of spectral data without obvious interpretative value, we used field images to directly measure soybean canopy development from phenological stage V2 to R5. Over 3 years, we collected imagery using ground and aerial platforms of a large and diverse nested association panel comprising 5555 lines. Genome-wide association analysis of canopy coverage across sampling dates detected a large quantitative trait locus (QTL) on soybean (Glycine max, L. Merr.) chromosome 19. This QTL provided an increase in yield of 47.3 kg ha-1 Variance component analysis indicated that a parameter, described as average canopy coverage, is a highly heritable trait (h2 = 0.77) with a promising genetic correlation with grain yield (0.87), enabling indirect selection of yield via canopy development parameters. Our findings indicate that fast canopy coverage is an early season trait that is inexpensive to measure and has great potential for application in breeding programs focused on yield improvement. We recommend using the average canopy coverage in multiple trait schemes, especially for the early stages of the breeding pipeline (including progeny rows and preliminary yield trials), in which the large number of field plots makes collection of grain yield data challenging.
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van Emmerik T, Steele-Dunne S, Hut R, Gentine P, Guerin M, Oliveira RS, Wagner J, Selker J, van de Giesen N. Measuring Tree Properties and Responses Using Low-Cost Accelerometers. SENSORS 2017; 17:s17051098. [PMID: 28492477 PMCID: PMC5470488 DOI: 10.3390/s17051098] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2017] [Revised: 04/24/2017] [Accepted: 05/09/2017] [Indexed: 11/16/2022]
Abstract
Trees play a crucial role in the water, carbon and nitrogen cycle on local, regional and global scales. Understanding the exchange of momentum, heat, water, and CO2 between trees and the atmosphere is important to assess the impact of drought, deforestation and climate change. Unfortunately, ground measurements of tree properties such as mass and canopy interception of precipitation are often expensive or difficult due to challenging environments. This paper aims to demonstrate the concept of using robust and affordable accelerometers to measure tree properties and responses. Tree sway is dependent on mass, canopy structure, drag coefficient, and wind forcing. By measuring tree acceleration, we can relate the tree motion to external forcing (e.g., wind, precipitation and related canopy interception) and tree physical properties (e.g., mass, elasticity). Using five months of acceleration data of 19 trees in the Brazilian Amazon, we show that the frequency spectrum of tree sway is related to mass, canopy interception of precipitation, and canopy–atmosphere turbulent exchange.
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Lichtenberg M, Brodersen KE, Kühl M. Radiative Energy Budgets of Phototrophic Surface-Associated Microbial Communities and their Photosynthetic Efficiency Under Diffuse and Collimated Light. Front Microbiol 2017; 8:452. [PMID: 28400749 PMCID: PMC5368174 DOI: 10.3389/fmicb.2017.00452] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2017] [Accepted: 03/03/2017] [Indexed: 11/13/2022] Open
Abstract
We investigated the radiative energy budgets of a heterogeneous photosynthetic coral reef sediment and a compact uniform cyanobacterial biofilm on top of coastal sediment. By combining electrochemical, thermocouple and fiber-optic microsensor measurements of O2, temperature and light, we could calculate the proportion of the absorbed light energy that was either dissipated as heat or conserved by photosynthesis. We show, across a range of different incident light regimes, that such radiative energy budgets are highly dominated by heat dissipation constituting up to 99.5% of the absorbed light energy. Highest photosynthetic energy conservation efficiency was found in the coral sediment under low light conditions and amounted to 18.1% of the absorbed light energy. Additionally, the effect of light directionality, i.e., diffuse or collimated light, on energy conversion efficiency was tested on the two surface-associated systems. The effects of light directionality on the radiative energy budgets of these phototrophic communities were not unanimous but, resulted in local spatial differences in heat-transfer, gross photosynthesis, and light distribution. The light acclimation index, Ek, i.e., the irradiance at the onset of saturation of photosynthesis, was >2 times higher in the coral sediment compared to the biofilm and changed the pattern of photosynthetic energy conservation under light-limiting conditions. At moderate to high incident irradiances, the photosynthetic conservation of absorbed energy was highest in collimated light; a tendency that changed in the biofilm under sub-saturating incident irradiances, where higher photosynthetic efficiencies were observed under diffuse light. The aim was to investigate how the physical structure and light propagation affected energy budgets and light utilization efficiencies in loosely organized vs. compact phototrophic sediment under diffuse and collimated light. Our results suggest that the optical properties and the structural organization of phytoelements are important traits affecting the photosynthetic efficiency of biofilms and sediments.
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Smith HL, McAusland L, Murchie EH. Don't ignore the green light: exploring diverse roles in plant processes. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:2099-2110. [PMID: 28575474 DOI: 10.1093/jxb/erx098] [Citation(s) in RCA: 113] [Impact Index Per Article: 16.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The pleasant green appearance of plants, caused by their reflectance of wavelengths in the 500-600 nm range, might give the impression that green light is of minor importance in biology. This view persists to an extent. However, there is strong evidence that these wavelengths are not only absorbed but that they also drive and regulate physiological responses and anatomical traits in plants. This review details the existing evidence of essential roles for green wavelengths in plant biology. Absorption of green light is used to stimulate photosynthesis deep within the leaf and canopy profile, contributing to carbon gain and likely crop yield. In addition, green light also contributes to the array of signalling information available to leaves, resulting in developmental adaptation and immediate physiological responses. Within shaded canopies this enables optimization of resource-use efficiency and acclimation of photosynthesis to available irradiance. In this review, we suggest that plants may use these wavelengths not just to optimize stomatal aperture but also to fine-tune whole-canopy efficiency. We conclude that all roles for green light make a significant contribution to plant productivity and resource-use efficiency. We also outline the case for using green wavelengths in applied settings such as crop cultivation in LED-based agriculture and horticulture.
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Harrison JG, Forister ML, Parchman TL, Koch GW. Vertical stratification of the foliar fungal community in the world's tallest trees. AMERICAN JOURNAL OF BOTANY 2016; 103:2087-2095. [PMID: 27965238 DOI: 10.3732/ajb.1600277] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2016] [Accepted: 11/14/2016] [Indexed: 05/28/2023]
Abstract
PREMISE OF THE STUDY The aboveground tissues of plants host numerous, ecologically important fungi, yet patterns in the spatial distribution of these fungi remain little known. Forest canopies in particular are vast reservoirs of fungal diversity, but intracrown variation in fungal communities has rarely been explored. Knowledge of how fungi are distributed throughout tree crowns will contribute to our understanding of interactions between fungi and their host trees and is a first step toward investigating drivers of community assembly for plant-associated fungi. Here we describe spatial patterns in fungal diversity within crowns of the world's tallest trees, coast redwoods (Sequoia sempervirens). METHODS We took a culture-independent approach, using the Illumina MiSeq platform, to characterize the fungal assemblage at multiple heights within the crown across the geographical range of the coast redwood. KEY RESULTS Within each tree surveyed, we uncovered evidence for vertical stratification in the fungal community; different portions of the tree crown harbored different assemblages of fungi. We also report between-tree variation in the fungal community within redwoods. CONCLUSIONS Our results suggest the potential for vertical stratification of fungal communities in the crowns of other tall tree species and should prompt future study of the factors giving rise to this stratification.
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Camarota F, Powell S, S Melo A, Priest G, J Marquis R, L Vasconcelos H. Co-occurrence patterns in a diverse arboreal ant community are explained more by competition than habitat requirements. Ecol Evol 2016; 6:8907-8918. [PMID: 28035279 PMCID: PMC5192950 DOI: 10.1002/ece3.2606] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2016] [Revised: 10/11/2016] [Accepted: 10/19/2016] [Indexed: 11/15/2022] Open
Abstract
A major goal of community ecology is to identify the patterns of species associations and the processes that shape them. Arboreal ants are extremely diverse and abundant, making them an interesting and valuable group for tackling this issue. Numerous studies have used observational data of species co‐occurrence patterns to infer underlying assembly processes, but the complexity of these communities has resulted in few solid conclusions. This study takes advantage of an observational dataset that is unusually well‐structured with respect to habitat attributes (tree species, tree sizes, and vegetation structure), to disentangle different factors influencing community organization. In particular, this study assesses the potential role of interspecific competition and habitat selection on the distribution patterns of an arboreal ant community by incorporating habitat attributes into the co‐occurrence analyses. These findings are then contrasted against species traits, to explore functional explanations for the identified community patterns. We ran a suite of null models, first accounting only for the species incidence in the community and later incorporating habitat attributes in the null models. We performed analyses with all the species in the community and then with only the most common species using both a matrix‐level approach and a pairwise‐level approach. The co‐occurrence patterns did not differ from randomness in the matrix‐level approach accounting for all ant species in the community. However, a segregated pattern was detected for the most common ant species. Moreover, with the pairwise approach, we found a significant number of negative and positive pairs of species associations. Most of the segregated associations appear to be explained by competitive interactions between species, not habitat affiliations. This was supported by comparisons of species traits for significantly associated pairs. These results suggest that competition is the most important influence on the distribution patterns of arboreal ants within the focal community. Habitat attributes, in contrast, showed no significant influence on the matrix‐wide results and affected only a few associations. In addition, the segregated pairs shared more biological characteristic in common than the aggregated and random ones.
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Rescic J, Mikulic-Petkovsek M, Rusjan D. The impact of canopy managements on grape and wine composition of cv. 'Istrian Malvasia' (Vitis vinifera L.). JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2016; 96:4724-4735. [PMID: 27129430 DOI: 10.1002/jsfa.7778] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2016] [Revised: 04/22/2016] [Accepted: 04/24/2016] [Indexed: 05/08/2023]
Abstract
BACKGROUND The interest in producing wines preferred by consumers increases the need for improving practices to modify grape and wine composition. The aim of this study was to assess the impacts of three different canopy management measures, (1) early leaf removal in the cluster zone, (2) removal of young leaves above the second pair of wires and (3) Double Maturation Raisonnée, on the yield and chemical composition of 'Istrian Malvasia' grape and wine. RESULTS Double Maturation Raisonnée had a significantly greater impact on phenolic compounds, while the highest soluble solids (24.3 and 23.5 °Brix) and titratable acidity (7.0 and 7.1 g L-1 ) were measured at early leaf removal. Leaf removal at véraison caused an unexpected augmentation of flavonols in the berry skin. Early leaf removal resulted in significantly lower extracts of wine. Nevertheless, they reached the highest mark (16.5 out of 20.0 points) in sensory evaluation compared with leaf removal at véraison and Double Maturation Raisonnée (15.0 points) and control (16.0 points). CONCLUSION Leaf removal at véraison and Double Maturation Raisonnée improved the phenolic composition of wine, producing a full-bodied wine. On the other hand, early leaf removal significantly augmented the yield and titratable acidity, hydroxycinnamic acids and flavanols of wine, which might have led to a fresher but less-bodied wine. © 2016 Society of Chemical Industry.
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Burgess AJ, Retkute R, Preston SP, Jensen OE, Pound MP, Pridmore TP, Murchie EH. The 4-Dimensional Plant: Effects of Wind-Induced Canopy Movement on Light Fluctuations and Photosynthesis. FRONTIERS IN PLANT SCIENCE 2016; 7:1392. [PMID: 27708654 PMCID: PMC5030302 DOI: 10.3389/fpls.2016.01392] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2016] [Accepted: 09/01/2016] [Indexed: 05/20/2023]
Abstract
Physical perturbation of a plant canopy brought about by wind is a ubiquitous phenomenon and yet its biological importance has often been overlooked. This is partly due to the complexity of the issue at hand: wind-induced movement (or mechanical excitation) is a stochastic process which is difficult to measure and quantify; plant motion is dependent upon canopy architectural features which, until recently, were difficult to accurately represent and model in 3-dimensions; light patterning throughout a canopy is difficult to compute at high-resolutions, especially when confounded by other environmental variables. Recent studies have reinforced the expectation that canopy architecture is a strong determinant of productivity and yield; however, links between the architectural properties of the plant and its mechanical properties, particularly its response to wind, are relatively unknown. As a result, biologically relevant data relating canopy architecture, light- dynamics, and short-scale photosynthetic responses in the canopy setting are scarce. Here, we hypothesize that wind-induced movement will have large consequences for the photosynthetic productivity of our crops due to its influence on light patterning. To address this issue, in this study we combined high resolution 3D reconstructions of a plant canopy with a simple representation of canopy perturbation as a result of wind using solid body rotation in order to explore the potential effects on light patterning, interception, and photosynthetic productivity. We looked at two different scenarios: firstly a constant distortion where a rice canopy was subject to a permanent distortion throughout the whole day; and secondly, a dynamic distortion, where the canopy was distorted in incremental steps between two extremes at set time points in the day. We find that mechanical canopy excitation substantially alters light dynamics; light distribution and modeled canopy carbon gain. We then discuss methods required for accurate modeling of mechanical canopy excitation (here coined the 4-dimensional plant) and some associated biological and applied implications of such techniques. We hypothesize that biomechanical plant properties are a specific adaptation to achieve wind-induced photosynthetic enhancement and we outline how traits facilitating canopy excitation could be used as a route for improving crop yield.
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Bujan J, Yanoviak SP, Kaspari M. Desiccation resistance in tropical insects: causes and mechanisms underlying variability in a Panama ant community. Ecol Evol 2016; 6:6282-91. [PMID: 27648242 PMCID: PMC5016648 DOI: 10.1002/ece3.2355] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2016] [Revised: 07/05/2016] [Accepted: 07/11/2016] [Indexed: 02/04/2023] Open
Abstract
Desiccation resistance, the ability of an organism to reduce water loss, is an essential trait in arid habitats. Drought frequency in tropical regions is predicted to increase with climate change, and small ectotherms are often under a strong desiccation risk. We tested hypotheses regarding the underexplored desiccation potential of tropical insects. We measured desiccation resistance in 82 ant species from a Panama rainforest by recording the time ants can survive desiccation stress. Species' desiccation resistance ranged from 0.7 h to 97.9 h. We tested the desiccation adaptation hypothesis, which predicts higher desiccation resistance in habitats with higher vapor pressure deficit (VPD) - the drying power of the air. In a Panama rainforest, canopy microclimates averaged a VPD of 0.43 kPa, compared to a VPD of 0.05 kPa in the understory. Canopy ants averaged desiccation resistances 2.8 times higher than the understory ants. We tested a number of mechanisms to account for desiccation resistance. Smaller insects should desiccate faster given their higher surface area to volume ratio. Desiccation resistance increased with ant mass, and canopy ants averaged 16% heavier than the understory ants. A second way to increase desiccation resistance is to carry more water. Water content was on average 2.5% higher in canopy ants, but total water content was not a good predictor of ant desiccation resistance or critical thermal maximum (CT max), a measure of an ant's thermal tolerance. In canopy ants, desiccation resistance and CT max were inversely related, suggesting a tradeoff, while the two were positively correlated in understory ants. This is the first community level test of desiccation adaptation hypothesis in tropical insects. Tropical forests do contain desiccation-resistant species, and while we cannot predict those simply based on their body size, high levels of desiccation resistance are always associated with the tropical canopy.
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Zhang N, Xu WX, Li LH, Wu NP, Wu PJ, Cheng XF. [Effects of nitrogen application on canopy vertical structure, grain-leaf ratio and economic benefit of winter wheat under drip irrigation.]. YING YONG SHENG TAI XUE BAO = THE JOURNAL OF APPLIED ECOLOGY 2016; 27:2491-2498. [PMID: 29733135 DOI: 10.13287/j.1001-9332.201608.028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
To optimize the fertilization rate of winter wheat under drip irrigation in Xinjiang region, a field investigation was carried out to assess effects of nitrogen (N) applications on canopy vertical structure, grain-leaf ratio, yield and economic benefit of winter wheat. Four rates of nitrogen application, 0 kg·hm-2(N0), 104 kg·hm-2(N1), 173 kg·hm-2(N2) and 242 kg·hm-2(N3) were set in a randomized block experimental design. Meantime, leaf and stem morphological characters, canopy temperature and humidity in flowering stage, grain-leaf area ratio, yield and yield components, economic benefits of winter wheat were observed under different treatments. The results showed that the leaf length and width at different positions of wheat under the nitrogen fertilization treatments were significantly higher than that without nitrogen fertilization (P<0.05), and plant height ranged from 65.57 to 81.58 cm. With an increasing rate of nitrogen fertilization, both leafarea index and stem diameter presented a trend of first increasing and then decreasing, and reached the maximum under N2 treatment, which was 5.48 and 0.49 cm, respectively. Diurnal variation of canopy temperature and humidity were "convex" and "concave" shape, followed an order of N0>N1>N2>N3 in temperature, but reversely in canopy humidity. The duration of high temperature higher than 35 ℃ were shorten 1 hour to 3.5 hours as the nitrogen application level increased, and there was significant difference between N1 and N3 on grain-leaf ratio. Yield and economic be-nefit decreased initially and then increased with increasing nitrogen application. Yield and economic benefit of treatment N2 were 32.8% and 77.7% higher than those of treatment N0, 12.6% and 5.4% higher than those of treatment N1, and 5.2% and 4.2% higher than those of treatment N3, respectively. These results indicated that nitrogen application at about 173 kg·hm-2 could be recommended as the optimum rate for winter wheat, which had good leaf and plant morphology, appropriate canopy temperature and humidity, high yield and economic efficiency in the experiment area.
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Fisher JB, Sweeney S, Brzostek ER, Evans TP, Johnson DJ, Myers JA, Bourg NA, Wolf AT, Howe RW, Phillips RP. Tree-mycorrhizal associations detected remotely from canopy spectral properties. GLOBAL CHANGE BIOLOGY 2016; 22:2596-607. [PMID: 27282323 DOI: 10.1111/gcb.13264] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2015] [Revised: 01/27/2016] [Accepted: 02/19/2016] [Indexed: 05/28/2023]
Abstract
A central challenge in global ecology is the identification of key functional processes in ecosystems that scale, but do not require, data for individual species across landscapes. Given that nearly all tree species form symbiotic relationships with one of two types of mycorrhizal fungi - arbuscular mycorrhizal (AM) and ectomycorrhizal (ECM) fungi - and that AM- and ECM-dominated forests often have distinct nutrient economies, the detection and mapping of mycorrhizae over large areas could provide valuable insights about fundamental ecosystem processes such as nutrient cycling, species interactions, and overall forest productivity. We explored remotely sensed tree canopy spectral properties to detect underlying mycorrhizal association across a gradient of AM- and ECM-dominated forest plots. Statistical mining of reflectance and reflectance derivatives across moderate/high-resolution Landsat data revealed distinctly unique phenological signals that differentiated AM and ECM associations. This approach was trained and validated against measurements of tree species and mycorrhizal association across ~130 000 trees throughout the temperate United States. We were able to predict 77% of the variation in mycorrhizal association distribution within the forest plots (P < 0.001). The implications for this work move us toward mapping mycorrhizal association globally and advancing our understanding of biogeochemical cycling and other ecosystem processes.
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Yanoviak SP, Munk Y, Dudley R. Arachnid aloft: directed aerial descent in neotropical canopy spiders. J R Soc Interface 2016; 12:0534. [PMID: 26289654 DOI: 10.1098/rsif.2015.0534] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The behaviour of directed aerial descent has been described for numerous taxa of wingless hexapods as they fall from the tropical rainforest canopy, but is not known in other terrestrial arthropods. Here, we describe similar controlled aerial behaviours for large arboreal spiders in the genus Selenops (Selenopidae). We dropped 59 such spiders from either canopy platforms or tree crowns in Panama and Peru; the majority (93%) directed their aerial trajectories towards and then landed upon nearby tree trunks. Following initial dorsoventral righting when necessary, falling spiders oriented themselves and then translated head-first towards targets; directional changes were correlated with bilaterally asymmetric motions of the anterolaterally extended forelegs. Aerial performance (i.e. the glide index) decreased with increasing body mass and wing loading, but not with projected surface area of the spider. Along with the occurrence of directed aerial descent in ants, jumping bristletails, and other wingless hexapods, this discovery of targeted gliding in selenopid spiders further indicates strong selective pressures against uncontrolled falls into the understory for arboreal taxa.
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Freitas L, Salino A, Neto LM, Elias Almeida T, Mortara SR, Stehmann JR, Amorim AM, Guimarães EF, Coelho MN, Zanin A, Forzza RC. A comprehensive checklist of vascular epiphytes of the Atlantic Forest reveals outstanding endemic rates. PHYTOKEYS 2016; 58:65-79. [PMID: 26884706 PMCID: PMC4743015 DOI: 10.3897/phytokeys.58.5643] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/10/2015] [Accepted: 11/14/2015] [Indexed: 06/05/2023]
Abstract
Knowledge of the geographic distribution of plants is essential to underpin the understanding of global biodiversity patterns. Vascular epiphytes are important components of diversity and functionality of Neotropical forests but, unlike their terrestrial counterparts, they are under-represented in large-scale diversity and biogeographic analyses. This is the case for the Atlantic Forest - one of the most diverse and threatened biomes worldwide. We provide the first comprehensive species list of Atlantic Forest vascular epiphytes; their endemism patterns and threatened species occurrence have also been analyzed. A list with 2,256 species of (hemi-)epiphytes - distributed in 240 genera and 33 families - is presented based on the updated Brazilian Flora Checklist. This represents more than 15% of the total vascular plant richness in the Atlantic Forest. Moreover, 256 species are included on the Brazilian Red List. More than 93% of the overall richness is concentrated in ten families, with 73% represented by Orchidaceae and Bromeliaceae species alone. A total of 78% of epiphytic species are endemic to the Atlantic Forest, in contrast to overall vascular plant endemism in this biome estimated at 57%. Among the non-endemics, 13% of epiphytic species also occur either in the Amazon or in the Cerrado - the other two largest biomes of Brazil - and only 8% are found in two or more Brazilian biomes. This pattern of endemism, in addition to available dated phylogenies of some genera, indicate the dominance of recent radiations of epiphytic groups in the Atlantic Forest, showing that the majority of divergences dating from the Pliocene onwards are similar to those that were recently reported for other Neotropical plants.
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Hass AL, Ellis KN, Reyes Mason L, Hathaway JM, Howe DA. Heat and Humidity in the City: Neighborhood Heat Index Variability in a Mid-Sized City in the Southeastern United States. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2016; 13:ijerph13010117. [PMID: 26761021 PMCID: PMC4730508 DOI: 10.3390/ijerph13010117] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2015] [Revised: 12/17/2015] [Accepted: 01/06/2016] [Indexed: 11/16/2022]
Abstract
Daily weather conditions for an entire city are usually represented by a single weather station, often located at a nearby airport. This resolution of atmospheric data fails to recognize the microscale climatic variability associated with land use decisions across and within urban neighborhoods. This study uses heat index, a measure of the combined effects of temperature and humidity, to assess the variability of heat exposure from ten weather stations across four urban neighborhoods and two control locations (downtown and in a nearby nature center) in Knoxville, Tennessee, USA. Results suggest that trees may negate a portion of excess urban heat, but are also associated with greater humidity. As a result, the heat index of locations with more trees is significantly higher than downtown and areas with fewer trees. Trees may also reduce heat stress by shading individuals from incoming radiation, though this is not considered in this study. Greater amounts of impervious surfaces correspond with reduced evapotranspiration and greater runoff, in terms of overall mass balance, leading to a higher temperature, but lower relative humidity. Heat index and relative humidity were found to significantly vary between locations with different tree cover and neighborhood characteristics for the full study time period as well as for the top 10% of heat index days. This work demonstrates the need for high-resolution climate data and the use of additional measures beyond temperature to understand urban neighborhood exposure to extreme heat, and expresses the importance of considering vulnerability differences among residents when analyzing neighborhood-scale impacts.
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Götmark F, Götmark E, Jensen AM. Why Be a Shrub? A Basic Model and Hypotheses for the Adaptive Values of a Common Growth Form. FRONTIERS IN PLANT SCIENCE 2016; 7:1095. [PMID: 27507981 PMCID: PMC4961008 DOI: 10.3389/fpls.2016.01095] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2016] [Accepted: 07/11/2016] [Indexed: 05/08/2023]
Abstract
Shrubs are multi-stemmed short woody plants, more widespread than trees, important in many ecosystems, neglected in ecology compared to herbs and trees, but currently in focus due to their global expansion. We present a novel model based on scaling relationships and four hypotheses to explain the adaptive significance of shrubs, including a review of the literature with a test of one hypothesis. Our model describes advantages for a small shrub compared to a small tree with the same above-ground woody volume, based on larger cross-sectional stem area, larger area of photosynthetic tissue in bark and stem, larger vascular cambium area, larger epidermis (bark) area, and larger area for sprouting, and faster production of twigs and canopy. These components form our Hypothesis 1 that predicts higher growth rate for a small shrub than a small tree. This prediction was supported by available relevant empirical studies (14 publications). Further, a shrub will produce seeds faster than a tree (Hypothesis 2), multiple stems in shrubs insure future survival and growth if one or more stems die (Hypothesis 3), and three structural traits of short shrub stems improve survival compared to tall tree stems (Hypothesis 4)-all hypotheses have some empirical support. Multi-stemmed trees may be distinguished from shrubs by more upright stems, reducing bending moment. Improved understanding of shrubs can clarify their recent expansion on savannas, grasslands, and alpine heaths. More experiments and other empirical studies, followed by more elaborate models, are needed to understand why the shrub growth form is successful in many habitats.
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Di Giovanni F, Cerretti P, Mason F, Minari E, Marini L. Vertical stratification of ichneumonid wasp communities: the effects of forest structure and life-history traits. INSECT SCIENCE 2015; 22:688-699. [PMID: 24996133 DOI: 10.1111/1744-7917.12153] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 06/16/2014] [Indexed: 06/03/2023]
Abstract
Parasitoid wasp communities of the canopy of temperate forests are still largely unexplored. Very little is known about the community composition of parasitoids between canopy and understory and how much of this difference is related to forest structure or parasitoid biological strategies. In this study we investigated upon the difference in the community composition of the parasitic wasps Ichneumonidae between canopy and understory in a lowland temperate forest in northern Italy. We used general linear models to test whether parasitic strategy modifies species vertical stratification and the effect of forest structure. We also tested differences in β-diversity between canopy and understory traps and over time within single forest layers. We found that stand basal area was positively related to species richness, suggesting that the presence of mature trees can influence local wasp diversity, providing a higher number of microhabitats and hosts. The ichneumonid community of the canopy was different from that of the understory, and the β-diversity analysis showed higher values for the canopy, due to a higher degree of species turnover between traps. In our analyses, the vertical stratification was different between groups of ichneumonids sharing different parasitic strategies. Idiobiont parasitoids of weakly or deeply concealed hosts were more diverse in the understory than in the canopy while parasitoids of spiders were equally distributed between the two layers. Even though the ichneumonid community was not particularly species-rich in the canopy of the temperate forests, the extension of sampling to that habitat significantly increased the number of species recorded.
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Gudex-Cross D, Barraclough RK, Brunton DH, Derraik JGB. Mosquito Communities and Avian Malaria Prevalence in Silvereyes (Zosterops lateralis) Within Forest Edge and Interior Habitats in a New Zealand Regional Park. ECOHEALTH 2015; 12:432-440. [PMID: 26065670 DOI: 10.1007/s10393-015-1039-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2014] [Revised: 05/04/2015] [Accepted: 05/18/2015] [Indexed: 06/04/2023]
Abstract
Forest fragmentation and agricultural development are important anthropogenic landscape alterations affecting the disease dynamics of malarial parasites (Plasmodium spp.), largely through their effects on vector communities. We compared vector abundance and species composition at two forest edge sites abutting pastureland and two forest interior sites in New Zealand, while simultaneously assessing avian malaria prevalence in silvereyes (Zosterops lateralis). Twenty-two of 240 (9.2%) individual silvereyes captured across all sites tested positive for avian malaria, and Plasmodium prevalence was nearly identical in edge and interior habitats. A total of 580 mosquito specimens were trapped across all sites. These comprised five different species: the introduced Aedes notoscriptus and Culex quinquefasciatus; the native A. antipodeus, C. asteliae and C. pervigilans. The known avian malaria vector C. quinquefasciatus was only recorded in the forest edge (mostly at ground level). In contrast, the probable vector C. pervigilans was abundant and widespread in both edge and interior sites. Although frequently caught in ground traps, more C. pervigilans specimens were captured in the canopy. This study shows that avian malaria prevalence among silvereyes appeared to be unaffected by forest fragmentation, at least at the scale assessed. Introduced mosquito species were almost completely absent from the forest interior, and thus our study provides further circumstantial evidence that native mosquito species (in particular C. pervigilans) play an important role in avian malaria transmission in New Zealand.
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