151
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Duan J, Shen S, Popple R, Wu X, Brezovich I. TH-E-BRB-07: Treatment Planning Performance of High Intensity Flattening-Filter- Free Beams for Head-And-Neck Cancer: IMRT versus VMAT. Med Phys 2011. [DOI: 10.1118/1.3613564] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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152
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An T, Wang J, Bai H, Wu M, Zhao J, Duan J, Wang Y, Wang Z, Yang L. Retreatment after the failure of initial epidermal growth factor receptor inhibitor in non-small cell lung cancer. J Clin Oncol 2011. [DOI: 10.1200/jco.2011.29.15_suppl.e18048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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153
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Zhu J, Wang J, Bai H, Zhao J, Wang Z, Zhuo M, An T, Duan J, Yang L, Wu M, Guo Q, Liu X, Wang S, Wang Y. Effect of wnt aberrant methylation and epidermal growth factor receptor pathway mutation on responsiveness of non-small cell lung cancer to gefitinib and erlotinib. J Clin Oncol 2011. [DOI: 10.1200/jco.2011.29.15_suppl.e18011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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154
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Wang F, Wang J, Bai H, Zhao J, Wang Z, Zhuo M, An T, Duan J, Yang L, Wu M, Wang Y, Wang S, Liu X. An evaluation of phosphorylated EGFR expression in predicting outcome of EGFR-TKI therapy for the advanced NSCLC patients with EGFR wild type. J Clin Oncol 2011. [DOI: 10.1200/jco.2011.29.15_suppl.7532] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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155
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Wang J, Chen K, Bai H, Zhao J, Wang Z, Zhuo M, An T, Duan J, Yang L, Wu M, Guo Q, Liu X, Wang S, Wang Y. Chemotherapy influence EGFR mutation status for Chinese patients with regionally advanced non-small cell lung cancer. J Clin Oncol 2011. [DOI: 10.1200/jco.2011.29.15_suppl.7031] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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156
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Duan J, Sastry M, Dixon SL, Lowrie JF, Sherman W. Analysis and comparison of 2D fingerprints: insights into database screening performance using eight fingerprint methods. J Cheminform 2011. [PMCID: PMC3083563 DOI: 10.1186/1758-2946-3-s1-p1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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157
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Fiveash J, Guthrie B, Duan J, Markert J, DeLosSantos J, Keene K, Spencer S, Dobelbower M, Arafat W, Popple R. A Phase II Isotoxicity Study of Spinal Radiosurgery/SBRT. Int J Radiat Oncol Biol Phys 2010. [DOI: 10.1016/j.ijrobp.2010.07.662] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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158
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Duan J, Shen S, Popple R, Wu X, Brezovich I. Dosimetric Errors Caused by Couch Shifts: An Investigation with Phantom Measurements and Computer Simulation. Int J Radiat Oncol Biol Phys 2010. [DOI: 10.1016/j.ijrobp.2010.07.1713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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159
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Linnan H, Duan J, Chen X, Yan S. Child injury surveillance that guides interventions: the Beijing primary healthcare experience. Inj Prev 2010; 17:74-8. [DOI: 10.1136/ip.2010.026443] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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160
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Popple R, Duan J, Shen S, Wu X, Brezovich I. SU-GG-T-555: Dosimetric Effect of Couch Position Variation for Intensity Modulated Arc Therapy. Med Phys 2010. [DOI: 10.1118/1.3468953] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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161
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Shen S, Jacob R, Steward J, Duan J, Varadarajulu S. SU-GG-J-59: Variation of Target Position Determined by Gold Fiducial Markers for Radiotherapy of Pancreatic Cancers. Med Phys 2010. [DOI: 10.1118/1.3468283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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162
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Wang J, Bai H, Zhao J, Wang Z, Zhuo M, Wu M, Duan J, Wang S. Effect of chemotherapy on EGFR mutation status in Chinese non-small cell lung cancer patients. J Clin Oncol 2010. [DOI: 10.1200/jco.2010.28.15_suppl.e18031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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163
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Bai H, An T, Zhuo M, Zhao J, Wu M, Duan J, Yang L, Wang Z, Wang J. Multibiomarker analysis homing in on EGFR-TKIs therapy in non-small cell lung cancer. J Clin Oncol 2010. [DOI: 10.1200/jco.2010.28.15_suppl.e18025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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164
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Zhao L, Bai H, Zhuo M, Zhao J, Duan J, Wang Z, Wang Y, Wu M, An T, Wang J. The relationship between EGFR gene copy number and EGFR mutation and clinical predicting significance in the Chinese patients with advanced non-small cell lung cancer patients. J Clin Oncol 2010. [DOI: 10.1200/jco.2010.28.15_suppl.e18082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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165
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Abstract
It is well known that innate immune plays an important role in controlling the development of Plasmodium liver stage. However, little is known about the role of toll-like receptors (TLR) signalling in the pre-erythrocytic immunity against Plasmodium. Here, we found that pre-treatment with individual TLR agonist pam3CSK4 (TLR2), poly(I:C) (TLR3), LPS (TLR4) and CpG (TLR9) could decrease significantly the liver malaria parasite load in mice for 58%, 63%, 75% and 88% respectively. Moreover, no parasitaemia was observed within 14 days in CpG group mice challenged with 100 sporozoites. At 24 h prior to CpG injection, administration of gadolinium chloride (GdCl(3)) led to the rebound of liver Plasmodium load through inhibiting selectively Kupffer cells (KC) phagocytosis capacity but failed to neutralize completely CpG-induced immunity against malaria liver stage. Compared with the control, pre-treatment of CpG up-regulated hepatic pro-inflammatory cytokines IL-12, IFN-gamma and TNF-alpha, but down-regulated anti-inflammatory cytokines IL-10 and TGF-beta. Hence, our data demonstrated the inhibitory role of diverse TLR agonists in the Plasmodium development during pre-erythrocytic stage. As the most robust agonist, CpG might inhibit the development of Plasmodium liver stage through regulation of intrahepatic inflammatory cytokines and enhancement of KC cells phagocytosis capacity.
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Affiliation(s)
- J Chen
- Department of Pathogenic Biology, Third Military Medical University, Chongqing 400038 China
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166
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Duan J, Willey C, Shen S, Brezovich I. A Method to Overcome the Limitations of KVCT and MVCT in Treatment Planning for Patients with Bilateral Hip Prostheses. Int J Radiat Oncol Biol Phys 2009. [DOI: 10.1016/j.ijrobp.2009.07.797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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167
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Shen S, Spencer S, Fiveash J, Duan J, Jacob R, Keene K, Meredith R. Respiratory Motion of Different Thoracic Regions Determined by Prospective Gated CT for Treatment Planning. Int J Radiat Oncol Biol Phys 2009. [DOI: 10.1016/j.ijrobp.2009.07.1063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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168
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Huang L, Cheng T, Xu P, Duan J, Fang T, Xia Q. Immunoglobulin superfamily is conserved but evolved rapidly and is active in the silkworm, Bombyx mori. Insect Mol Biol 2009; 18:517-530. [PMID: 19604311 DOI: 10.1111/j.1365-2583.2009.00896.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Immunoglobulin superfamily (IgSF) proteins are known for their abilities to specifically recognize and adhere to cells. In this paper, we predicted the presence of 133 IgSF proteins in the silkworm (Bombyx mori) genome. Comparison with similar proteins in other model organisms (Caenorhabditis elegans, Drosophila melanogaster, Anopheles gambiae, Apis mellifera and Homo sapiens) indicated that IgSF proteins are conserved but have rapidly evolved from worms to human beings. However, these proteins are well conserved amongst insects. Silkworm microarray-based expression data showed tissue expression of 57 IgSF genes and microbe-induced differential expression of 37 genes. Based on the expression data, we can conclude that the silkworm IgSF is active.
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Affiliation(s)
- L Huang
- Institute of Sericulture and Systems Biology, Southwest University, Chongqing, China.
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169
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170
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Holmans PA, Riley B, Pulver AE, Owen MJ, Wildenauer DB, Gejman PV, Mowry BJ, Laurent C, Kendler KS, Nestadt G, Williams NM, Schwab SG, Sanders AR, Nertney D, Mallet J, Wormley B, Lasseter VK, O'Donovan MC, Duan J, Albus M, Alexander M, Godard S, Ribble R, Liang KY, Norton N, Maier W, Papadimitriou G, Walsh D, Jay M, O'Neill A, Lerer FB, Dikeos D, Crowe RR, Silverman JM, Levinson DF. Genomewide linkage scan of schizophrenia in a large multicenter pedigree sample using single nucleotide polymorphisms. Mol Psychiatry 2009; 14:786-95. [PMID: 19223858 PMCID: PMC2714870 DOI: 10.1038/mp.2009.11] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/09/2008] [Revised: 11/20/2008] [Accepted: 11/25/2008] [Indexed: 12/15/2022]
Abstract
A genomewide linkage scan was carried out in eight clinical samples of informative schizophrenia families. After all quality control checks, the analysis of 707 European-ancestry families included 1615 affected and 1602 unaffected genotyped individuals, and the analysis of all 807 families included 1900 affected and 1839 unaffected individuals. Multipoint linkage analysis with correction for marker-marker linkage disequilibrium was carried out with 5861 single nucleotide polymorphisms (SNPs; Illumina version 4.0 linkage map). Suggestive evidence for linkage (European families) was observed on chromosomes 8p21, 8q24.1, 9q34 and 12q24.1 in nonparametric and/or parametric analyses. In a logistic regression allele-sharing analysis of linkage allowing for intersite heterogeneity, genomewide significant evidence for linkage was observed on chromosome 10p12. Significant heterogeneity was also observed on chromosome 22q11.1. Evidence for linkage across family sets and analyses was most consistent on chromosome 8p21, with a one-LOD support interval that does not include the candidate gene NRG1, suggesting that one or more other susceptibility loci might exist in the region. In this era of genomewide association and deep resequencing studies, consensus linkage regions deserve continued attention, given that linkage signals can be produced by many types of genomic variation, including any combination of multiple common or rare SNPs or copy number variants in a region.
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Affiliation(s)
- P A Holmans
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, UK
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171
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Popple R, Brezovich I, Duan J, Shen S, Wu X. SU-DD-A1-06: RapidArc Patient Specific Quality Assurance: Comparison with DMLC IMRT. Med Phys 2009. [DOI: 10.1118/1.3181074] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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172
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Shen S, Spencer S, Fiveash J, Duan J, Jacob R, Keene K, Meredith R, Popple R. SU-FF-J-102: Determining Residual Target Motion and Gating Window Width From Gated CT for Routine Gated Delivery. Med Phys 2009. [DOI: 10.1118/1.3181394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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173
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Popple R, Brezovich I, Duan J, Shen S, Wu X. SU-FF-T-253: Use of a Commercial Linac QA Device for RapidArc Routine Quality Assurance. Med Phys 2009. [DOI: 10.1118/1.3181729] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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174
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Duan J, Zhang Y, Liang H. [Control of an outbreak of vivax malaria in Qiongzhong county]. Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi 2009; 17:270. [PMID: 12563853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/28/2023]
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175
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Duan J, Zhao Y. Antimicrobial Efficiency of Essential Oil and Freeze-Thaw Treatments againstEscherichia coliO157:H7 andSalmonella entericaSer. Enteritidis in Strawberry Juice. J Food Sci 2009; 74:M131-7. [DOI: 10.1111/j.1750-3841.2009.01094.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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176
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O’Donovan M, Norton N, Williams H, Peirce T, Moskvina V, Nikolov I, Hamshere M, Carroll L, Georgieva L, Dwyer S, Holmans P, Marchini JL, Spencer C, Howie B, Leung HT, Giegling I, Hartmann A, Möller HJ, Morris D, Shi Y, Feng G, Hoffmann P, Propping P, Vasilescu C, Maier W, Rietschel M, Zammit S, Schumacher J, Quinn E, Schulze T, Iwata N, Ikeda M, Darvasi A, Shifman S, He L, Duan J, Sanders A, Levinson D, Adolfsson R, Ösby U, Terenius L, Jönsson EG, Cichon S, Nöthen MM, Gill M, Corvin A, Rujescu D, Gejman P, Kirov G, Craddock N, Williams N, Owen M. Analysis of 10 independent samples provides evidence for association between schizophrenia and a SNP flanking fibroblast growth factor receptor 2. Mol Psychiatry 2009; 14:30-6. [PMID: 18813210 PMCID: PMC3016613 DOI: 10.1038/mp.2008.108] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
We and others have previously reported linkage to schizophrenia on chromosome 10q25-q26 but, to date, a susceptibility gene in the region has not been identified. We examined data from 3606 single-nucleotide polymorphisms (SNPs) mapping to 10q25-q26 that had been typed in a genome-wide association study (GWAS) of schizophrenia (479 UK cases/2937 controls). SNPs with P<0.01 (n=40) were genotyped in an additional 163 UK cases and those markers that remained nominally significant at P<0.01 (n=22) were genotyped in replication samples from Ireland, Germany and Bulgaria consisting of a total of 1664 cases with schizophrenia and 3541 controls. Only one SNP, rs17101921, was nominally significant after meta-analyses across the replication samples and this was genotyped in an additional six samples from the United States/Australia, Germany, China, Japan, Israel and Sweden (n=5142 cases/6561 controls). Across all replication samples, the allele at rs17101921 that was associated in the GWAS showed evidence for association independent of the original data (OR 1.17 (95% CI 1.06-1.29), P=0.0009). The SNP maps 85 kb from the nearest gene encoding fibroblast growth factor receptor 2 (FGFR2) making this a potential susceptibility gene for schizophrenia.
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Affiliation(s)
- M.C. O’Donovan
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - N. Norton
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - H. Williams
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - T. Peirce
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - V. Moskvina
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - I. Nikolov
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - M. Hamshere
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - L. Carroll
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - L. Georgieva
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - S Dwyer
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - P. Holmans
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - J. L. Marchini
- Department of Statistics, University of Oxford, OX1 3TG, UK
| | - C.C.A. Spencer
- Department of Statistics, University of Oxford, OX1 3TG, UK
| | - B. Howie
- Department of Statistics, University of Oxford, OX1 3TG, UK
| | - H-T. Leung
- Juvenile Diabetes Research Foundation/Wellcome Trust Diabetes and Inflammation Laboratory, Department of Medical Genetics, University of Cambridge, Cambridge, CB2 0XY, UK
| | - I. Giegling
- Division of Molecular and Clinical Neurobiology Ludwig-Maximilians-University, Nußbaumstr. 7, 80336 Munich, Germany
| | - A.M. Hartmann
- Division of Molecular and Clinical Neurobiology Ludwig-Maximilians-University, Nußbaumstr. 7, 80336 Munich, Germany
| | - H.-J. Möller
- Department of Psychiatry, Ludwig-Maximilians-University, Nußbaumstr. 7, 80336 Munich, Germany
| | - D.W. Morris
- Neuropsychiatric Genetics Research Group, School of Medicine, Trinity College Dublin 8, Ireland
| | - Y. Shi
- Bio-X Center, Shanghai Jiao Tong University, Shanghai 200030, P.R.China
| | - G. Feng
- Shanghai Institute of Mental Health, Shanghai 200030, P.R. China
| | - P. Hoffmann
- Department of Genomics, Life & Brain Center, University of Bonn, 53105 Bonn, Germany
| | - P. Propping
- Institute of Human Genetics University of Bonn, 53105 Bonn, Germany
| | - C. Vasilescu
- Department of Genomics, Life & Brain Center, University of Bonn, 53105 Bonn, Germany
| | - W. Maier
- Department of Psychiatry, University of Bonn, 53105 Bonn, Germany
| | - M. Rietschel
- Central Institute for Mental Health, Division Genetic Epidemiology in Psychiatry, 68159 Mannheim, Germany
| | - S. Zammit
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - J. Schumacher
- Genetic Basis of Mood and Anxiety Disorders, NIMH/NIH, Bethesda MD 20892-3719, USA
| | - E.M. Quinn
- Neuropsychiatric Genetics Research Group, School of Medicine, Trinity College Dublin 8, Ireland
| | - T.G. Schulze
- Genetic Basis of Mood and Anxiety Disorders, NIMH/NIH, Bethesda MD 20892-3719, USA
| | - N. Iwata
- Department of Psychiatry, Fujita Health University School of Medicine, Aichi 470-1192, Japan
,CREST Japan Science and Technology Agency, Saitama 332-0012, Japan
| | - M. Ikeda
- Department of Psychiatry, Fujita Health University School of Medicine, Aichi 470-1192, Japan
,CREST Japan Science and Technology Agency, Saitama 332-0012, Japan
| | - A. Darvasi
- Department of Genetics, Institute of Life Sciences, Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - S. Shifman
- Department of Genetics, Institute of Life Sciences, Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - L. He
- Bio-X Center, Shanghai Jiao Tong University, Shanghai 200030, P.R.China
,Institute for Nutritional Sciences, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, P.R. China
| | - J. Duan
- Center for Psychiatric Genetics, Evanston Northwestern Healthcare (ENH) The Northwestern University, Evanston, Il 60201, USA
,Feinberg School of Medicine, The Northwestern University, Evanston, Il 60201, USA
| | - A.R. Sanders
- Center for Psychiatric Genetics, Evanston Northwestern Healthcare (ENH) The Northwestern University, Evanston, Il 60201, USA
,Feinberg School of Medicine, The Northwestern University, Evanston, Il 60201, USA
| | - D.F. Levinson
- Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, CA 94305, USA
| | - R. Adolfsson
- Clinical Sciences and Psychiatry, SE-901 87 Umeå University, SE-901 87 Umeå Sweden
| | - U. Ösby
- Department of Clinical Neuroscience, HUBIN project, Karolinska Institutet, SE-171 76 Stockholm, Sweden
| | - Lars Terenius
- Department of Clinical Neuroscience, HUBIN project, Karolinska Institutet, SE-171 76 Stockholm, Sweden
| | - Erik G Jönsson
- Department of Clinical Neuroscience, HUBIN project, Karolinska Institutet, SE-171 76 Stockholm, Sweden
| | | | - S. Cichon
- Department of Genomics, Life & Brain Center, University of Bonn, 53105 Bonn, Germany
,Institute of Human Genetics University of Bonn, 53105 Bonn, Germany
| | - M. M. Nöthen
- Department of Genomics, Life & Brain Center, University of Bonn, 53105 Bonn, Germany
,Institute of Human Genetics University of Bonn, 53105 Bonn, Germany
| | - M. Gill
- Neuropsychiatric Genetics Research Group, School of Medicine, Trinity College Dublin 8, Ireland
| | - A.P. Corvin
- Neuropsychiatric Genetics Research Group, School of Medicine, Trinity College Dublin 8, Ireland
| | - D. Rujescu
- Division of Molecular and Clinical Neurobiology Ludwig-Maximilians-University, Nußbaumstr. 7, 80336 Munich, Germany
| | - P.V. Gejman
- Center for Psychiatric Genetics, Evanston Northwestern Healthcare (ENH) The Northwestern University, Evanston, Il 60201, USA
,Feinberg School of Medicine, The Northwestern University, Evanston, Il 60201, USA
| | - G. Kirov
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - N. Craddock
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - N.M. Williams
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
| | - M.J. Owen
- Department of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK
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177
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Duan J, Fiveash J, Shen S, De Los Santos J, Spencer S, Keene K, Popple R. Factors Impacting Patient Intrafractional Motion during Spinal Radiosurgery with Tomotherapy. Int J Radiat Oncol Biol Phys 2008. [DOI: 10.1016/j.ijrobp.2008.06.1520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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178
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Shen S, Spencer S, Bender L, Duan J. Routine IMRT and 3D Treatment Planning with SPECT Images for Preserving Functional Lung. Int J Radiat Oncol Biol Phys 2008. [DOI: 10.1016/j.ijrobp.2008.06.1389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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179
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180
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Shen S, Spencer S, Bender L, Duan J. MO-E-AUD C-02: Incorporating SPECT Functional Lung Images in Routine Treatment Planning for Lung Cancer. Med Phys 2008. [DOI: 10.1118/1.2962391] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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181
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Duan J, Fiveash J, Shen S, Popple R. TH-C-AUD C-05: Assessment of Intrafractional Motion for Spinal Radiosurgery Patients by Multiple Onboard Megavoltage CT Scans During Treatment. Med Phys 2008. [DOI: 10.1118/1.2962851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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182
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Guo LH, Wang HL, Liu XD, Duan J. Identification of protein differences between two clinical isolates of Streptococcus mutans by proteomic analysis. ACTA ACUST UNITED AC 2008; 23:105-11. [DOI: 10.1111/j.1399-302x.2007.00394.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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183
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Duan J, Park SI, Daeschel M, Zhao Y. Antimicrobial Chitosan-Lysozyme (CL) Films and Coatings for Enhancing Microbial Safety of Mozzarella Cheese. J Food Sci 2007; 72:M355-62. [DOI: 10.1111/j.1750-3841.2007.00556.x] [Citation(s) in RCA: 106] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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184
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Duan J, Shen S, Fiveash J, Brezovich I. Feasibility of Helical Tomotherapy for Lung Cancer Treatment: The Effect of Respiratory Motion on Imaging and Dose Delivery. Int J Radiat Oncol Biol Phys 2007. [DOI: 10.1016/j.ijrobp.2007.07.1965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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185
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Shen S, Duan J, Popple R, Fiveash J, Spencer S, Wu X, Ye S, Pareek P, Brezovich I. SU-FF-J-78: 3-D Target Localization at the End of Expiration Prior to Respiration-Gated Radiotherapy Treatment. Med Phys 2007. [DOI: 10.1118/1.2760583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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186
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Popple R, Brezovich I, Duan J, Spencer S. SU-FF-T-426: Treatment Planning Comparison of Dynamic Multileaf Collimation and Helical Tomotherapy for Spinal Cord Sparing in Head and Neck Re-Irradiation. Med Phys 2007. [DOI: 10.1118/1.2761151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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187
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Wu X, Spencer S, Fiveash J, Brezovich I, Duan J, Shen S, Young P. SU-FF-T-372: Registration of Frameless High-Field MRI to Low-Field Frame-Based MRI Images in Leksell Gamma-Knife (LGK) Radiosurgery. Med Phys 2007. [DOI: 10.1118/1.2761097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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188
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Duan J, Shen S, Popple R, Fiveash J, Wu X, Pareek P, Brezovich I. TH-C-AUD-03: Impact of Respiratory Motion On Helical Tomotherapy Dose Delivery: A Phantom Study with 3-D Volumetric Dose Measurements. Med Phys 2007. [DOI: 10.1118/1.2761662] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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189
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Chen BD, Zhu YG, Duan J, Xiao XY, Smith SE. Effects of the arbuscular mycorrhizal fungus Glomus mosseae on growth and metal uptake by four plant species in copper mine tailings. Environ Pollut 2007; 147:374-80. [PMID: 16764975 DOI: 10.1016/j.envpol.2006.04.027] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2006] [Accepted: 04/14/2006] [Indexed: 05/10/2023]
Abstract
A greenhouse experiment was conducted to evaluate the potential role of arbuscular mycorrhizal fungi (AMF) in encouraging revegetation of copper (Cu) mine tailings. Two native plant species, Coreopsis drummondii and Pteris vittata, together with a turf grass, Lolium perenne and a leguminous plant Trifolium repens associated with and without AMF Glomus mosseae were grown in Cu mine tailings to assess mycorrhizal effects on plant growth, mineral nutrition and metal uptake. Results indicated that symbiotic associations were successfully established between G. mosseae and all plants tested, and mycorrhizal colonization markedly increased plant dry matter yield except for L. perenne. The beneficial impacts of mycorrhizal colonization on plant growth could be largely explained by both improved P nutrition and decreased shoot Cu, As and Cd concentrations. The experiment provided evidence for the potential use of local plant species in combination with AMF for ecological restoration of metalliferous mine tailings.
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Affiliation(s)
- B D Chen
- Department of Soil Environmental Science, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, PR China.
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190
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Nilsson A, Duan J, Mo-Boquist LL, Benedikz E, Sundström E. Characterisation of the human NMDA receptor subunit NR3A glycine binding site. Neuropharmacology 2006; 52:1151-9. [PMID: 17320117 DOI: 10.1016/j.neuropharm.2006.12.002] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2006] [Revised: 12/05/2006] [Accepted: 12/07/2006] [Indexed: 11/20/2022]
Abstract
In this study, we characterise the binding site of the human N-methyl-d-aspartate (NMDA) receptor subunit NR3A. Saturation radioligand binding of the NMDA receptor agonists [(3)H]-glycine and [(3)H]-glutamate showed that only glycine binds to human NR3A (hNR3A) with high affinity (K(d)=535nM (277-793nM)). Eight amino acids, which correspond to amino acids that are critical for ligand binding to other NMDA receptor subunits, situated within the S1S2 predicted ligand binding domain of hNR3A were mutated, which resulted in complete or near complete loss of [(3)H]-glycine binding to hNR3A. The NMDA NR1 glycine site agonist d-serine and partial agonist HA-966 (3-amino-1-hydroxypyrrolid-2-one), similarly to glycine displaced [(3)H]-glycine monophasically, suggesting a single common binding site. However, neither the partial agonist d-cycloserine nor the antagonist 7-chlorokynurenic acid displaced [(3)H]-glycine. Using homology modelling, a model of the NR3A binding pocket was generated which we suggest can be used to identify candidate agonists and antagonists. Our data show that glycine is a ligand, and most probably the endogenous ligand, for native NR3A at a binding site with unique pharmacological characteristics.
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Affiliation(s)
- A Nilsson
- Division of Neurodegeneration and Neuroinflammation, Department of Neurobiology, Caring Sciences and Society, Karolinska Institutet, Novum, S-141 86 Stockholm, Sweden.
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191
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Guo LH, Shi JN, Zhang Y, Liu XD, Duan J, Wei S. Identification of genetic differences between two clinical isolates of Streptococcus mutans by suppression subtractive hybridization. ACTA ACUST UNITED AC 2006; 21:372-80. [PMID: 17064395 DOI: 10.1111/j.1399-302x.2006.00306.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Streptococcus mutans is generally considered to be the principal aetiological agent for dental caries. Phenotypic variation in strains is often associated with differences in gene content, so the isolation of DNA fragments from these genes or associated regions is illuminating. The S. mutans strains 9-1 and 9-2, which both colonized the same oral cavity, were selected after screening for the possession of suspected virulence traits. Genomic DNA of strain 9-1 was used as the tester, and that of 9-2 was used as the driver. Suppression subtractive hybridization (SSH) was applied between the tester and the driver DNAs. The subtractive products were cloned into a pCR2.1 vector. Clone libraries representing sequence differences were obtained. The subtractive fragments that were found specifically in strain 9-1 but not in strain 9-2 were identified by dot blotting and then sequenced. BLASTn and BLASTx sequence homology analyses were subsequently performed. Twenty-seven sequences were found in the genome of strain 9-1 that were not in 9-2. Among them, three revealed no homology to published nucleotide sequences while the remaining sequences showed 81-100% homology to known genes of S. mutans strain UA159. These sequences are involved in competence development, signal transduction and transcriptional regulation, repairing stress damage, transport, carbohydrate catabolism, biochemical synthesis, or unknown functions. Differences exist in the genomes of different S. mutans isolates. SSH is effective in screening for S. mutans strain specific DNA sequences.
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Affiliation(s)
- L H Guo
- Department of Oral Biology, Peking University School and Hospital of Stomatology, Beijing, China.
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192
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Chiu TH, Duan J, Liu C, Su YC. Efficacy of electrolysed oxidizing water in inactivating Vibrio parahaemolyticus on kitchen cutting boards and food contact surfaces. Lett Appl Microbiol 2006; 43:666-72. [PMID: 17083714 DOI: 10.1111/j.1472-765x.2006.02006.x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
AIM To determine the efficacy of electrolysed oxidizing (EO) water in inactivating Vibrio parahaemolyticus on kitchen cutting boards and food contact surfaces. METHODS AND RESULTS Cutting boards (bamboo, wood and plastic) and food contact surfaces (stainless steel and glazed ceramic tile) were inoculated with V. parahaemolyticus. Viable cells of V. parahaemolyticus were detected on all cutting boards and food contact surfaces after 10 and 30 min, respectively, at room temperatures. Soaking inoculated food contact surfaces and cutting boards in distilled water for 1 and 3 min, respectively, resulted in various reductions of V. parahaemolyticus, but failed to remove the organism completely from surfaces. However, the treatment of EO water [pH 2.7, chlorine 40 ppm, oxidation-reduction potential 1151 mV] for 30, 45, and 60 s, completely inactivated V. parahaemolyticus on stainless steel, ceramic tile, and plastic cutting boards, respectively. CONCLUSIONS EO water could be used as a disinfecting agent for inactivating V. parahaemolyticus on plastic and wood cutting boards and food contact surfaces. SIGNIFICANCE AND IMPACT OF THE STUDY Rinsing the food contact surfaces with EO water or soaking cutting boards in EO water for up to 5 min could be a simple strategy to reduce cross-contamination of V. parahaemolyticus during food preparation.
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Affiliation(s)
- T-H Chiu
- OSU Seafood Laboratory, Oregon State University, Astoria, Oregon 97103, USA
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193
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Duan J, Spencer S, Shen S, De Los Santos J. 2424. Int J Radiat Oncol Biol Phys 2006. [DOI: 10.1016/j.ijrobp.2006.07.834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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194
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Popple R, Brezovich I, Fiveash J, Duan J, Shen S, Wu X. TU-D-ValA-06: Incorporation of Modulation Range Constraints Into a Gradient Search Algorithm for IMRT Optimization. Med Phys 2006. [DOI: 10.1118/1.2241575] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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195
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Wu X, Sui S, Spencer S, Fiveash J, Duan J, Popple R, Pareek P, Brezovich I. MO-E-330A-04: Semi-Automatic Contouring for Respiratory Gating. Med Phys 2006. [DOI: 10.1118/1.2241452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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196
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Shen S, Duan J, Spencer S, Fiveash J, Ye S, Wu X, Popple R, Pareek P, Brezovich I. SU-FF-J-114: Reduction of Respiratory Motion Using Diaphragm Compression and Gating for Hypofractionated Radiotherapy of Lung and Liver Cancer. Med Phys 2006. [DOI: 10.1118/1.2240890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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197
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Duan J, Shen S, Popple R, Wu X, Pareek P, Brezovich I. SU-FF-T-189: Dosimetric Figures-Of-Merit Based Comparison of Three IMRT Modalities: Helical Tomotherapy, Sequential Tomotherapy and DMLC-IMRT. Med Phys 2006. [DOI: 10.1118/1.2241113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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198
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Ye S, Brezovich I, Pareek P, Duan J, Spencer S. SU-FF-T-282: Beam Modifier Design for Total Skin Electron Irradiations Using Monte Carlo Techniques. Med Phys 2005. [DOI: 10.1118/1.1998011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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199
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Shen S, Duan J, Spencer S, Fiveash J, Russo S, Bonner J, Ye S, Popple R, Pareek P, Brezovich I. SU-FF-J-123: Residual Tumor Motion in Respiratory Gated CT Treatment Planing. Med Phys 2005. [DOI: 10.1118/1.1997669] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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200
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Popple R, Weinberg R, Antolak J, Brezovich I, Duan J, Pareek P. SU-FF-T-288: Evaluation of a Commercial Macro Monte Carlo Electron Dose Calculation Algorithm. Med Phys 2005. [DOI: 10.1118/1.1998017] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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