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Liu Z, Xu T, Qi J, Uduagbomen J, Zhao J, Liu T. Achievable information rate optimization in C-band optical fiber communication system. FRONTIERS OF OPTOELECTRONICS 2023; 16:17. [PMID: 37380849 DOI: 10.1007/s12200-023-00072-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Accepted: 04/19/2023] [Indexed: 06/30/2023]
Abstract
Optical fiber communication networks play an important role in the global telecommunication network. However, nonlinear effects in the optical fiber and transceiver noise greatly limit the performance of fiber communication systems. In this paper, the product of mutual information (MI) and communication bandwidth is used as the metric of the achievable information rate (AIR). The MI loss caused by the transceiver is also considered in this work, and the bit-wise MI, generalized mutual information (GMI), is used to calculate the AIR. This loss is more significant in the use of higher-order modulation formats. The AIR analysis is carried out in the QPSK, 16QAM, 64QAM and 256QAM modulation formats for the communication systems with different communication bandwidths and transmission distances based on the enhanced Gaussian noise (EGN) model. The paper provides suggestions for the selection of the optimal modulation format in different transmission scenarios.
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Xu H, Qi J, Zhang Y, Liu H, Hu L, Feng M, Lü W. Magnetic Field-Enhanced Oxygen Evolution Reaction via the Tuneability of Spin Polarization in a Half-Metal Catalyst. ACS APPLIED MATERIALS & INTERFACES 2023. [PMID: 37384856 DOI: 10.1021/acsami.3c03713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/01/2023]
Abstract
The magnetic field response of an electrochemistry process, such as the oxygen evolution reaction (OER), provides not only a strategy for enhanced catalytic activity by applying an external field but also a platform for revealing the functionality of the multiple degrees of freedom of the catalyst. However, the mechanism of the magnetic field tuneable OER is controversial. The strong correlation between the d and p orbitals of transition metal and oxygen still puzzles the dominant role of spin in an OER process. Here in this study, we have employed the manganite La0.7Sr0.2Ca0.1MnO3 as the ferromagnetic OER catalyst, which has a ferromagnetic/paramagnetic transition (TC) around the room temperature. It is found that the overpotential can be reduced by ∼18% after applying a 5 kOe magnetic field. Furthermore, this magnetic field can trigger a further improvement of the OER performance, and it demonstrates a strong temperature dependence which is incongruent with its magnetoresistive behavior. So our experiments suggest that the observed magnetic response originates dominantly from the triplet state of the O2, where the spin-polarized d and oxygen p orbitals lower the Gibbs free energy for every reaction step in OER. This study offers experimental evidence on comprehending the spin degree in the OER process, meanwhile benefiting the further design and engineering of the promising magnetic electrochemistry catalysts.
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Wang M, Lange A, Perlman D, Qi J, George AK, Ferrante S, Semerjian A, Sarle R, Cher ML, Ginsburg KB. Upgrading on Per Protocol versus For Cause surveillance prostate biopsies: An opportunity to decreasing the burden of active surveillance. Prostate 2023. [PMID: 37173808 DOI: 10.1002/pros.24556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Revised: 04/03/2023] [Accepted: 05/01/2023] [Indexed: 05/15/2023]
Abstract
BACKGROUND Most prostate cancer (PC) active surveillance (AS) protocols recommend "Per Protocol" surveillance biopsy (PPSBx) every 1-3 years, even if clinical and imaging parameters remained stable. Herein, we compared the incidence of upgrading on biopsies that met criteria for "For Cause" surveillance biopsy (FCSBx) versus PPSBx. METHODS We retrospectively reviewed men with GG1 PC on AS in the Michigan Urological Surgery Improvement Collaborative (MUSIC) registry. Surveillance prostate biopsies obtained 1 year after diagnosis were classified as either PPSBx or FCSBx. Biopsies were retrospectively deemed FCSBx if any of these criteria were met: PSA velocity > 0.75 ng/mL/year; rise in PSA > 3 ng from baseline; surveillance magnetic resonance imaging (MRI) (sMRI) with a PIRADS ≥ 4; change in DRE. Biopsies were classified PPSBx if none of these criteria were met. The primary outcome was upgrading to ≥GG2 or ≥GG3 on surveillance biopsy. The secondary objective was to assess for the association of reassuring (PIRADS ≤ 3) confirmatory or surveillance MRI findings and upgrading for patients undergoing PPSBx. Proportions were compared with the chi-squared test. RESULTS We identified 1773 men with GG1 PC in MUSIC who underwent a surveillance biopsy. Men meeting criteria for FCSBx had more upgrading to ≥GG2 (45%) and ≥GG3 (12%) compared with those meeting criteria for PPSBx (26% and 4.9%, respectively, p < 0.001 and p < 0.001). Men with a reassuring confirmatory or surveillance MRI undergoing PPSBx had less upgrading to ≥GG2 (17% and 17%, respectively) and ≥GG3 (2.9% and 1.8%, respectively) disease compared with men without an MRI (31% and 7.4%, respectively). CONCLUSIONS Patients undergoing PPSBx had significantly less upgrading compared with men undergoing FCSBx. Confirmatory and surveillance MRI seem to be valuable tools to stratify the intensity of surveillance biopsies for men on AS. These data may help inform the development of a risk-stratified, data driven AS protocol.
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Kim S, Rainer BM, Qi J, Brown I, Ogurtsova A, Leung S, Garza LA, Kang S, Chien AL. Clinical and molecular change induced by repeated low-dose visible light exposure in both light-skinned and dark-skinned individuals. PHOTODERMATOLOGY, PHOTOIMMUNOLOGY & PHOTOMEDICINE 2023; 39:204-212. [PMID: 35861041 PMCID: PMC9859939 DOI: 10.1111/phpp.12819] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 07/01/2022] [Accepted: 07/16/2022] [Indexed: 01/25/2023]
Abstract
BACKGROUND Visible light (VL) is known to induce pigmentation in dark-skinned individuals and immediate erythema in light-skinned individuals. However, the effects of accumulated low-dose VL exposure across skin types are not well established. METHODS Thirty-one healthy subjects with light (Fitzpatrick skin types [FST] I-II, n = 13) and dark (FST V-VI, n = 18) skin types were enrolled. Subjects' buttocks were exposed daily to VL, wavelength 400-700 nm, with a dose of 120 J/cm2 at 50 mW/cm2 , for four consecutive days. Microarray using Affymetrix GeneChip (49,395 genes) was performed followed by qRT-PCR on skin samples. RESULTS Repeated low-dose VL irradiation induced immediate pigment darkening and delayed tanning in dark-skinned individuals while no discernable pigmentation and erythema were observed in light-skinned individuals. Top ten upregulated genes by repeated VL exposure in microarray included melanogenic genes such as tyrosinase (TYR), tyrosinase-related protein-1 (TYRP1), dopachrome tautomerase (DCT), premelanosome protein (PMEL), melan-A (MLANA), and solute carrier family 24, member 5 (SLC24A5) and genes involved in inflammation/matrix remodeling/cell signaling including chemokine (C-C motif) ligand 18 (CCL18), BCL2-related protein A1 (BCL2A1), and cartilage oligomeric matrix protein (COMP). In qRT-PCR CCL18 was upregulated in light skin with a greater extent (mean fold change ± SD; 4.03 ± 3.28, p = .04) than in dark-skinned individuals (1.91 ± 1.32, p = .07) while TYR was not significantly upregulated in both skin types. CONCLUSION This study highlights the genes upregulated by cumulative VL exposure involved in pigmentation, immune response, oxidation/reduction, and matrix remodeling across skin types providing relevant information on daily solar exposure.
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Liu H, Xie R, Wang Q, Han J, Han Y, Wang J, Fang H, Qi J, Ding M, Ji W, He B, Lü W. Enhanced OER Performance and Dynamic Transition of Surface Reconstruction in LaNiO 3 Thin Films with Nanoparticles Decoration. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2023; 10:e2207128. [PMID: 36828784 PMCID: PMC10161029 DOI: 10.1002/advs.202207128] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2022] [Revised: 02/04/2023] [Indexed: 05/06/2023]
Abstract
In an electrocatalytic process, the cognition of the active phase in a catalyst has been regarded as one of the most vital issues, which not only boosts the fundamental understanding of the reaction procedure but also guides the engineering and design for further promising catalysts. Here, based on the oxygen evolution reaction (OER), the stepwise evolution of the dominant active phase is demonstrated in the LaNiO3 (LNO) catalyst once the single-crystal thin film is decorated by LNO nanoparticles. It is found that the OER performance can be dramatically improved by this decoration, and the catalytic current density at 1.65 V can be enhanced by ≈1000% via ≈109 cm-2 nanoparticle adhesion after extracting the contribution of surface enlargement. Most importantly, a transition of the active phase from LNO to NiOOH via surface reconstruction with the density of LNO nanoparticles is demonstrated. Several mechanisms in terms of this active phase transition are discussed involving lattice orientation-induced change of the surface energy profile, the lattice oxygen participation, and the A/B-site ions leaching during OER cycles. This study suggests that the active phases in transition metal-based OER catalysts can transform with morphology, which should be corresponding to distinct engineering strategies.
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Gao H, Qi X, Zhang J, Wang N, Xin J, Jiao D, Liu K, Qi J, Guan Y, Ding D. Smart One-for-All Agent with Adaptive Functions for Improving Photoacoustic /Fluorescence Imaging-Guided Photodynamic Immunotherapy. SMALL METHODS 2023; 7:e2201582. [PMID: 36807567 DOI: 10.1002/smtd.202201582] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 01/19/2023] [Indexed: 05/17/2023]
Abstract
Multifunctional phototheranostics that integrate several diagnostic and therapeutic strategies into one platform hold great promise for precision medicine. However, it is really difficult for one molecule to possess multimodality optical imaging and therapy properties that all functions are in the optimized mode because the absorbed photoenergy is fixed. Herein, a smart one-for-all nanoagent that the photophysical energy transformation processes can be facilely tuned by external light stimuli is developed for precise multifunctional image-guided therapy. A dithienylethene-based molecule is designed and synthesized because it has two light-switchable forms. In the ring-closed form, most of the absorbed energy dissipates via nonradiative thermal deactivation for photoacoustic (PA) imaging. In the ring-open form, the molecule possesses obvious aggregation-induced emission features with excellent fluorescence and photodynamic therapy properties. In vivo experiments demonstrate that preoperative PA and fluorescence imaging help to delineate tumors in a high-contrast manner, and intraoperative fluorescence imaging is able to sensitively detect tiny residual tumors. Furthermore, the nanoagent can induce immunogenic cell death to elicit antitumor immunity and significantly suppress solid tumors. This work develops a smart one-for-all agent that the photophysical energy transformation and related phototheranostic properties can be optimized by light-driven structure switch, which is promising for multifunctional biomedical applications.
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Yu Q, Suo L, Qi J, Wang Y, Hu Q, Shan Y, Zhao Y. Soil habitat condition shapes Tamarix chinensis community diversity in the coastal saline-alkali soils. FRONTIERS IN PLANT SCIENCE 2023; 14:1156297. [PMID: 37180386 PMCID: PMC10169711 DOI: 10.3389/fpls.2023.1156297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 04/10/2023] [Indexed: 05/16/2023]
Abstract
Introduction Unfavorable coastal saline-alkali soil habitats degrade plant community diversity and reduce terrestrial ecological functions. Previous studies have been conducted on the mechanisms by which certain saline-alkali soil properties determine plant community diversity, however, how those properties synergistically affect plant community diversity remains unclear. Methods Here, 36 plots of typical Tamarix chinensis communities were investigated for a range of parameters at three different distances (10, 20, and 40 km) from the coastline in the Yellow River Delta between 2020 and 2022, and corresponding soil samples were taken and analyzed. Results and discussion Our results suggest that although T. chinensis density, ground diameter, and canopy coverage significantly increased (P<0.05) with increasing distance from the coast, the communities with the most plant species were found at 10 to 20 km distance from the coastline, indicating the effects of soil habitat on T. chinensis community diversity. Simpson dominance (species dominance), Margalef (species richness), and Pielou indices (species evenness) differed significantly among the three distances (P<0.05) and were significantly correlated with soil sand content, mean soil moisture, and electrical conductivity (P<0.05), indicating that soil texture, water, and salinity were the main factors governing T. chinensis community diversity. Principal component analysis (PCA) was performed to construct an integrated soil habitat index (SHI) representing the synthesis of the soil texture-water-salinity condition. The estimated SHI quantified a 64.2% variation in the synthetic soil texture-water-salinity condition and was significantly higher at the 10 km distance than at the 40 and 20 km distances. The SHI linearly predicted T. chinensis community diversity (R2 = 0.12-0.17, P<0.05), suggesting that greater SHI (coarser soil texture, wetter soil moisture regime, and higher soil salinity) was found closer to the coast and coincided with higher species dominance and evenness and lower species richness in the T. chinensis community. These findings on the relationship between T. chinensis communities and soil habitat conditions will be valuable in planning the restoration and protection of the ecological functions of T. chinensis shrubs in the Yellow River Delta.
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Pan L, Shen Y, Qi J, Shi J, Feng X. Single photon single pixel imaging into thick scattering medium. OPTICS EXPRESS 2023; 31:13943-13958. [PMID: 37157269 DOI: 10.1364/oe.484874] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Imaging into thick scattering medium is a long-standing challenge. Beyond the quasi-ballistic regime, multiple scattering scrambles the spatiotemporal information of incident/emitted light, making canonical imaging based on light focusing nearly impossible. Diffusion optical tomography (DOT) is one of the most popular approach to look inside scattering medium, but quantitatively inverting the diffusion equation is ill-posed, and prior information of the medium is typically necessary, which is nontrivial to obtain. Here, we show theoretically and experimentally that, by synergizing the one-way light scattering characteristic of single pixel imaging with ultrasensitive single photon detection and a metric-guided image reconstruction, single photon single pixel imaging can serve as a simple and powerful alternative to DOT for imaging into thick scattering medium without prior knowledge or inverting the diffusion equation. We demonstrated an image resolution of 12 mm inside a 60 mm thick (∼ 78 mean free paths) scattering medium.
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Zhang Y, Xu H, Liu M, Qi J, Hu L, Feng M, Lü W. The modulated oxygen evolution reaction performance of LaFeO 3 with abundant electronic structures via a design of stoichiometry offset. Phys Chem Chem Phys 2023; 25:11725-11731. [PMID: 37066604 DOI: 10.1039/d2cp06015a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/18/2023]
Abstract
Transition metal oxides have been widely employed as electrocatalysts in various electrochemical processes such as oxygen evolution reaction (OER) owing to their designable adsorption/desorption ability of water intermediates by engineering their electronic structures. However, the coexistence of multiple chemical valences of the transition metal always hides the realization of the functional active phase in OER. In this study, we have performed the OER measurements on LaFeO3 (LFO) catalysts to reveal the complex relationships between 3d electronic structure and its OER responses; herein, several electronic statuses, including t42ge2g (S = 2), t52ge1g (S = 1), or t62ge0g (S = 0) of Fe ions, can be dominantly achieved by the design of stoichiometry offset in LFO. It is found that the current density of LFO at 1.9 V shows a volcanic dependence on the oxygen content. After the comprehensive characterization of Fe and oxygen ions in LFO by X-ray photoelectron spectroscopy and magnetic hysteresis measurements, we have found the OH- adsorption capacity and exchange interaction of Fe ions jointly determine the OER performance. Our research provides a stepwise evolution of the multiple spin states in LFO, and their subsequent OER responses are demonstrated, which can benefit the fundamental understanding of the link between 3d electronic structure and OER performance and the design for further promising transition metal oxide catalysts.
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Semerjian A, Ginsburg K, Qi J, Johnson A, Noyes S, Rogers C, Lane BR. Guideline Compliance Regarding Chest Imaging of Suspicious cT1 Renal Masses in MUSIC-KIDNEY. UROLOGY PRACTICE 2023:101097UPJ0000000000000408. [PMID: 37103883 DOI: 10.1097/upj.0000000000000408] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/28/2023]
Abstract
INTRODUCTION Multiple urologic societies recommend chest imaging for suspicious renal masses using chest X-ray (CXR), or computed tomography (CT) as clinically indicated. The purpose of chest imaging is to assess for thoracic metastasis at the time of renal mass (RM) diagnosis. Ideally, imaging use and type is commensurate with risk related to tumor size and clinical stage. We examined current practice patterns with chest imaging compliance in the state of Michigan and implemented clinician education and VBR (value-based reimbursement) incentivization on guideline adherence. MATERIALS AND METHODS MUSIC-KIDNEY is a statewide initiative focusing on quality improvement for patients with cT1 RM. Data regarding chest imaging in MUSIC and panel discussion occurred at in-person MUSIC meeting in October 2019. Adherence to chest imaging guidelines was made a VBR metric at the tri-annual MUSIC meeting in January 2020. Adherence was defined as optional in RM <3 cm (CT not indicated), recommended in RM 3-5 cm (CXR preferred), and required in RM >5 cm (CT preferred). The MUSIC registry was queried for percentage of patients receiving chest imaging by type. Factors associated with adherence were assessed. RESULTS There was significant practice level variation in chest imaging rates across the 14 contributing practices, ranging from 11 to 68%. Compliance with MUSIC guidelines for chest imaging during evaluation of T1RM was 81.8% overall, with only 61.8% of patients with masses >5 cm meeting the guideline requiring imaging with preference for CT. Factors associated with increased adherence included larger tumor size (T1b vs T1a) and solid (vs cystic or indeterminate) tumor (P < .05 for each). Prior to VBR introduction, 46.7% of patients underwent imaging of either type, compared to 49.0% post-intervention. Imaging rates only slightly increased in masses >5 cm (58.3% pre-VBR vs 61.2% after, P = .56) and 3-5 cm (50.0% pre-VBR vs 56.2% post-VBR, P = .0585). CONCLUSIONS Chest imaging guideline adherence during the initial evaluation of cT1 renal masses is acceptable, particularly given that most masses are <3 cm for which metastatic risk is low. However, despite consensus from major urologic societies regarding imaging for masses >4-5 cm, imaging rates were low across MUSIC. After educational and VBR incentive initiation, rates of imaging for 3-5 cm and >5 cm masses changed only slightly. There remains significant practice variability and room for improvement.
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Lee T, Qi J, Gadre CA, Huyan H, Ko ST, Zuo Y, Du C, Li J, Aoki T, Wu R, Luo J, Ong SP, Pan X. Atomic-scale origin of the low grain-boundary resistance in perovskite solid electrolyte Li 0.375Sr 0.4375Ta 0.75Zr 0.25O 3. Nat Commun 2023; 14:1940. [PMID: 37024455 PMCID: PMC10079928 DOI: 10.1038/s41467-023-37115-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Accepted: 03/02/2023] [Indexed: 04/08/2023] Open
Abstract
Oxide solid electrolytes (OSEs) have the potential to achieve improved safety and energy density for lithium-ion batteries, but their high grain-boundary (GB) resistance generally is a bottleneck. In the well-studied perovskite oxide solid electrolyte, Li3xLa2/3-xTiO3 (LLTO), the ionic conductivity of grain boundaries is about three orders of magnitude lower than that of the bulk. In contrast, the related Li0.375Sr0.4375Ta0.75Zr0.25O3 (LSTZ0.75) perovskite exhibits low grain boundary resistance for reasons yet unknown. Here, we use aberration-corrected scanning transmission electron microscopy and spectroscopy, along with an active learning moment tensor potential, to reveal the atomic scale structure and composition of LSTZ0.75 grain boundaries. Vibrational electron energy loss spectroscopy is applied for the first time to reveal atomically resolved vibrations at grain boundaries of LSTZ0.75 and to characterize the otherwise unmeasurable Li distribution therein. We find that Li depletion, which is a major reason for the low grain boundary ionic conductivity of LLTO, is absent for the grain boundaries of LSTZ0.75. Instead, the low grain boundary resistivity of LSTZ0.75 is attributed to the formation of a nanoscale defective cubic perovskite interfacial structure that contained abundant vacancies. Our study provides new insights into the atomic scale mechanisms of low grain boundary resistivity.
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Wang H, Fan Z, Hu Z, Xu N, Chen H, Yu X, Qi J, Chen P, Su H. Response to letter 'How to choose the suitable FNS specification in young patients with femoral neck fracture: A finite element analysis-letter to editor'. Injury 2023; 54:1227. [PMID: 36792404 DOI: 10.1016/j.injury.2023.02.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
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Chen Y, Zhou S, Li M, Zhao F, Qi J. STEEL enables high-resolution delineation of spatiotemporal transcriptomic data. Brief Bioinform 2023; 24:7066346. [PMID: 36857617 DOI: 10.1093/bib/bbad068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 01/16/2023] [Accepted: 02/06/2023] [Indexed: 03/03/2023] Open
Abstract
Advances in spatial transcriptomics enlarge the use of single cell technologies to unveil the expression landscape of the tissues with valuable spatial context. Here, we propose an unsupervised and manifold learning-based algorithm, Spatial Transcriptome based cEll typE cLustering (STEEL), which identifies domains from spatial transcriptome by clustering beads exhibiting both highly similar gene expression profiles and close spatial distance in the manner of graphs. Comprehensive evaluation of STEEL on spatial transcriptomic datasets from 10X Visium platform demonstrates that it not only achieves a high resolution to characterize fine structures of mouse brain but also enables the integration of multiple tissue slides individually analyzed into a larger one. STEEL outperforms previous methods to effectively distinguish different cell types/domains of various tissues on Slide-seq datasets, featuring in higher bead density but lower transcript detection efficiency. Application of STEEL on spatial transcriptomes of early-stage mouse embryos (E9.5-E12.5) successfully delineates a progressive development landscape of tissues from ectoderm, mesoderm and endoderm layers, and further profiles dynamic changes on cell differentiation in heart and other organs. With the advancement of spatial transcriptome technologies, our method will have great applicability on domain identification and gene expression atlas reconstruction.
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Han J, Liu H, Qi J, Xiang J, Fu L, Sun X, Wang L, Wang X, Li B, Chen L. A Simple and Effective Visual Fluorescent Sensing Paper-Based Chip for the Ultrasensitive Detection of Mercury Ions in Environmental Water. SENSORS (BASEL, SWITZERLAND) 2023; 23:3094. [PMID: 36991805 PMCID: PMC10058424 DOI: 10.3390/s23063094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/06/2023] [Revised: 03/03/2023] [Accepted: 03/08/2023] [Indexed: 06/19/2023]
Abstract
Traces of mercury ions in environmental water can harm humans and animals. Paper-based visual detection methods have been widely developed for the rapid detection of mercury ions; however, existing methods are not sensitive enough to be used in real environments. Here, we developed a novel, simple and effective visual fluorescent sensing paper-based chip for the ultrasensitive detection of mercury ions in environmental water. CdTe-quantum-dots-modified silica nanospheres were firmly absorbed by and anchored to the fiber interspaces on the paper's surface to effectively avoid the unevenness caused by liquid evaporation. The fluorescence of quantum dots emitted at 525 nm can be selectively and efficiently quenched with mercury ions, and the ultrasensitive visual fluorescence sensing results attained using this principle can be captured using a smartphone camera. This method has a detection limit of 2.83 µg/L and a fast response time (90 s). We successfully achieved the trace spiking detection of seawater (from three regions), lake water, river water and tap water with recoveries in the range of 96.8-105.4% using this method. This method is effective, low-cost, user-friendly and has good prospects for commercial application. Additionally, the work is expected to be utilized in the automated big data collection of large numbers of environmental samples.
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Habet V, Li N, Qi J, Peng G, Charkoftaki G, Vasiliou V, Sharma L, Pober JS, Dela Cruz C, Yan X, Pierce RW. Integrated Analysis of Tracheobronchial Fluid from Before and After Cardiopulmonary Bypass Reveals Activation of the Integrated Stress Response and Altered Pulmonary Microvascular Permeability. THE YALE JOURNAL OF BIOLOGY AND MEDICINE 2023; 96:23-42. [PMID: 37009190 PMCID: PMC10052603 DOI: 10.59249/kfyz8002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
Abstract
Objective: We aim to comprehensively describe the transcriptional activity and signaling of pulmonary parenchymal and immune cells before and after cardiopulmonary bypass (CPB) by using a multi-omic approach coupled with functional cellular assays. We hypothesize that key signaling pathways from specific cells within the lung alter pulmonary endothelial cell function resulting in worsening or improving disease. Methods: We collected serial tracheobronchial lavage samples from intubated patients less than 2-years-old undergoing surgery with CPB. Samples were immediately processed for single cell RNA sequencing (10x Genomics). Cell clustering, cell-type annotation, and visualization were performed, and differentially expressed genes (DEG) between serial samples were identified. Metabolomic and proteomic analyses were performed on the supernatant using mass spectrometry and a multiplex assay (SomaScan) respectively. Functional assays were done using electric cell-substrate impedance sensing to measure resistance across human pulmonary microvascular endothelial cells (HPMECs). Results: Analysis of eight patients showed a heterogeneous mixture of pulmonary parenchymal and immune cells. Cell clustering demonstrated time-dependent changes in the transcriptomic signature indicating altered cellular phenotypes after CPB. DEG analysis was represented by genes involved in host defense, innate immunity, and the mitochondrial respiratory transport chain. Ingenuity pathway analysis showed upregulation of the integrated stress response across all cell types after CPB. Metabolomic analysis demonstrated upregulation of ascorbate and aldarate metabolism. Unbiased proteomic analysis revealed upregulation of proteins involved in cytokine and chemokine pathways. Post-CPB patient supernatant improved HMPEC barrier function, suggesting a protective cellular response to CPB. Conclusion: Children who undergo CPB for cardiac surgery have distinct cell populations, transcriptional activity, and metabolism that change over time. The response to ischemia-reperfusion injury in the lower airway of children appears to be protective, with the need to identify potential targets through future investigations.
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Qi J, Cheng W, Gao Z, Chen Y, Shipton ML, Furkert D, Chin AC, Riley AM, Fiedler D, Potter BVL, Fu C. Itraconazole inhibits endothelial cell migration by disrupting inositol pyrophosphate-dependent focal adhesion dynamics and cytoskeletal remodeling. Biomed Pharmacother 2023; 161:114449. [PMID: 36857911 PMCID: PMC7614367 DOI: 10.1016/j.biopha.2023.114449] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 02/21/2023] [Accepted: 02/23/2023] [Indexed: 03/03/2023] Open
Abstract
The antifungal drug itraconazole has been repurposed to anti-angiogenic agent, but the mechanisms of action have been elusive. Here we report that itraconazole disrupts focal adhesion dynamics and cytoskeletal remodeling, which requires 5-diphosphoinositol 1,2,3,4,6-pentakisphosphate (5-InsP7). We find that inositol hexakisphosphate kinase 1 (IP6K1) binds Arp2 and generates 5-InsP7 to recruit coronin, a negative regulator of the Arp2/3 complex. IP6K1 also produces focal adhesion-enriched 5-InsP7, which binds focal adhesion kinase (FAK) at the FERM domain to promote its dimerization and phosphorylation. Itraconazole treatment elicits displacement of IP6K1/5-InsP7, thus augments 5-InsP7-mediated inhibition of Arp2/3 complex and reduces 5-InsP7-mediated FAK dimerization. Itraconazole-treated cells display reduced focal adhesion dynamics and actin cytoskeleton remodeling. Accordingly, itraconazole severely disrupts cell motility, an essential component of angiogenesis. These results demonstrate critical roles of IP6K1-generated 5-InsP7 in regulating focal adhesion dynamics and actin cytoskeleton remodeling and reveal functional mechanisms by which itraconazole inhibits cell motility.
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Wang X, Zheng X, Song Z, Lin D, Li Q, Qi J, Xiang J, Chen L, Li B. Electric yo-yo centrifugation combining with paper-based microfluidic immunoassay chip for inflammatory biomarkers detection in whole blood. Talanta 2023; 253:123883. [PMID: 36137494 DOI: 10.1016/j.talanta.2022.123883] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Revised: 06/25/2022] [Accepted: 08/23/2022] [Indexed: 12/13/2022]
Abstract
At present, most countries or regions use commercial centrifuges for centrifugation, but this is out of reaching for limited-resource areas. To overcome this problem, a portable electric yo-yo as centrifuge was firstly proposed to obtain serum, and this device can be combined with paper-based analytical devices for enzyme-linked immunosorbent assay (ELISA) analysis from human whole blood. In this study, inflammatory biomarkers C-reactive protein (CRP) and serum amyloid A (SAA) were used as target biomarker to verify the performance of the proposed method. The results shows good performance and their detection limits were determined to be 580 pg/mL for CRP and 800 pg/mL for SAA, respectively. We believe this method provides a new platform of low cost and fast detection for inflammatory biomarkers in the limited-resource settings.
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Zhu A, Srivastava A, Dibianco J, Qi J, Dhir A, Maruf M, Ferrante S, Johnson A, Semerjian A, Davenport M, Mammen L, Dabaja A, Lane B, Ginsburg K, Witzke K, George A. Negative predictive value of prostate MRI in real world practice: Results from a statewide surgical collaborative in the United States. Eur Urol 2023. [DOI: 10.1016/s0302-2838(23)00940-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
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94
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Li P, Fu H, Bai Z, Feng X, Qi J, Song X, Hu X, Chen L. A dummy molecularly imprinted ratiometric fluorescence nanosensor for the sensitive detection of guanidyl-microcystins in environmental water. Analyst 2023; 148:573-582. [PMID: 36594361 DOI: 10.1039/d2an01928k] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
An effective strategy is proposed to construct a highly sensitive ratiometric fluorescence sensing platform for microcystins (MCs) based on a dummy molecularly imprinted polymer using metformin as a template. The imprinted nanohybrids of carbon dots (CDs) combined with fluorescein isothiocyanate (FITC) are synthesized (CDs-FITC-SiO2@MIP), in which the CDs and FITC serve as assisted response signals and reference enhancement signals, respectively. Metformin can be used as a dummy template for MCs due to its partially similar molecular fragments to MCs that can form a specific recognition site cavity. MCs can simultaneously induce an obvious fluorescence quenching effect for the CDs and a reference fluorescence enhancement for FITC-SiO2, enabling ratiometric fluorescence detection of MCs. Thus, CDs-FITC-SiO2@MIP used as a signal probe has favorable sensitivity, stability, and selectivity. More importantly, a good linear relationship between the fluorescence intensity ratio (I620/450) and the concentration of MCs in the range of 0.5-500 μg L-1 is obtained with a LOD of 0.013 μg L-1 and 0.022 μg L-1 for MC-RR and MC-LR, respectively, under the optimum conditions. This method has great application potential in water quality monitoring by using CDs-FITC-SiO2@MIP as a promising candidate for monitoring MCs in complex systems.
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Fan Z, Chen P, Yu X, Li X, Su H, Chen H, Yang B, Qi J, Wang H. Biomechanical study of femoral neck system for young patients with nonanatomically reduced femoral neck fractures: a finite element. BMC Musculoskelet Disord 2023; 24:54. [PMID: 36681804 PMCID: PMC9862848 DOI: 10.1186/s12891-022-06124-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 12/30/2022] [Indexed: 01/22/2023] Open
Abstract
BACKGROUND A consensus regarding the optimal approach for treating femoral neck fractures is lacking. We aimed to investigate the biomechanical outcomes of Femoral Neck System (FNS) internal fixation components in the treatment of nonanatomically reduced femoral neck fractures. METHOD We constructed two types of femoral neck fractures of the Pauwels classification with angles of 30° and 50°, and three models of anatomic reduction, positive buttress reduction and negative buttress reduction were constructed. Subgroups of 1 to 4 mm were divided according to the distance of displacement in the positive buttress reduction and negative buttress reduction models. The von Mises stress and displacements of the femur and FNS internal fixation components were measured for each fracture group under 2100-N axial loads. RESULTS When the Pauwels angle was 30°, the positive 1-mm and 2-mm models had lower FNS stress than the negative buttress model. The positive 3- and 4-mm models showed FNS stress similar to that of the negative buttress model. But the four positive buttress models had similar stresses on the femur as the negative buttress model. When the Pauwels angle was 50°, the four positive buttress models had higher FNS stress than the negative buttress model. Three positive buttress models (2 mm, 3 and 4 mm) resulted in lower stress of the femur than the negative buttress model, though the 1-mm model did not. When the Pauwels angle was 30°, the positive buttress model had a lower displacement of the FNS than the negative buttress model and a similar displacement of the femur with the negative buttress model. When the Pauwels angle was 50°, the positive buttress model had a higher displacement of the FNS and femur than the negative buttress model. Our study also showed that the von Mises stress and displacement of the internal fixation and the femur increased as the fracture angle increased. CONCLUSION From the perspective of biomechanics, when the Pauwels angle was 30°, positive buttress was more stable to negative buttress. However, when the Pauwels angle was 50°, this advantage weakens. In our opinion, the clinical efficacy of FNS internal fixation with positive buttress may be related to the fracture angle, neck-shaft angle and alignment in the lateral view. This result needs verification in further clinical studies.
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Li J, Shen J, Wang R, Chen Y, Zhang T, Wang H, Guo C, Qi J. The nearly complete assembly of the Cercis chinensis genome and Fabaceae phylogenomic studies provide insights into new gene evolution. PLANT COMMUNICATIONS 2023; 4:100422. [PMID: 35957520 PMCID: PMC9860166 DOI: 10.1016/j.xplc.2022.100422] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Revised: 08/02/2022] [Accepted: 08/05/2022] [Indexed: 05/27/2023]
Abstract
Fabaceae is a large family of angiosperms with high biodiversity that contains a variety of economically important crops and model plants for the study of biological nitrogen fixation. Polyploidization events have been extensively studied in some Fabaceae plants, but the occurrence of new genes is still concealed, owing to a lack of genomic information on certain species of the basal clade of Fabaceae. Cercis chinensis (Cercidoideae) is one such species; it diverged earliest from Fabaceae and is essential for phylogenomic studies and new gene predictions in Fabaceae. To facilitate genomic studies on Fabaceae, we performed genome sequencing of C. chinensis and obtained a 352.84 Mb genome, which was further assembled into seven pseudochromosomes with 30 612 predicted protein-coding genes. Compared with other legume genomes, that of C. chinensis exhibits no lineage-specific polyploidization event. Further phylogenomic analyses of 22 legumes and 11 other angiosperms revealed that many gene families are lineage specific before and after the diversification of Fabaceae. Among them, dozens of genes are candidates for new genes that have evolved from intergenic regions and are thus regarded as de novo-originated genes. They differ significantly from established genes in coding sequence length, exon number, guanine-cytosine content, and expression patterns among tissues. Functional analysis revealed that many new genes are related to asparagine metabolism. This study represents an important advance in understanding the evolutionary pattern of new genes in legumes and provides a valuable resource for plant phylogenomic studies.
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Li C, Dong L, Durairaj J, Guan JC, Yoshimura M, Quinodoz P, Horber R, Gaus K, Li J, Setotaw YB, Qi J, De Groote H, Wang Y, Thiombiano B, Floková K, Walmsley A, Charnikhova TV, Chojnacka A, Correia de Lemos S, Ding Y, Skibbe D, Hermann K, Screpanti C, De Mesmaeker A, Schmelz EA, Menkir A, Medema M, Van Dijk ADJ, Wu J, Koch KE, Bouwmeester HJ. Maize resistance to witchweed through changes in strigolactone biosynthesis. Science 2023; 379:94-99. [PMID: 36603079 DOI: 10.1126/science.abq4775] [Citation(s) in RCA: 22] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Maize (Zea mays) is a major staple crop in Africa, where its yield and the livelihood of millions are compromised by the parasitic witchweed Striga. Germination of Striga is induced by strigolactones exuded from maize roots into the rhizosphere. In a maize germplasm collection, we identified two strigolactones, zealactol and zealactonoic acid, which stimulate less Striga germination than the major maize strigolactone, zealactone. We then showed that a single cytochrome P450, ZmCYP706C37, catalyzes a series of oxidative steps in the maize-strigolactone biosynthetic pathway. Reduction in activity of this enzyme and two others involved in the pathway, ZmMAX1b and ZmCLAMT1, can change strigolactone composition and reduce Striga germination and infection. These results offer prospects for breeding Striga-resistant maize.
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Chen Z, Zhang Z, Qi J, You J, Ma J, Chen L. Colorimetric detection of heavy metal ions with various chromogenic materials: Strategies and applications. JOURNAL OF HAZARDOUS MATERIALS 2023; 441:129889. [PMID: 36087533 DOI: 10.1016/j.jhazmat.2022.129889] [Citation(s) in RCA: 48] [Impact Index Per Article: 48.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 08/21/2022] [Accepted: 08/30/2022] [Indexed: 05/27/2023]
Abstract
Detection of heavy metal ions has drawn significant attention in environmental and food area due to their threats to the human health and ecosystem. Colorimetry is one of the most frequently-used methods for the detection of heavy metal ions owing to its simplicity, easy operation and rapid on-site detection. The development of chromogenic materials and their sensing mechanisms are the key research direction in the area of colorimetric method. Since each chromogenic material has their unique optical and chemical properties, they have totally different colorimetric sensing mechanisms. This review focuses on the chromogenic materials and their sensing strategies for the colorimetric detection of heavy metal ions. We divide the chromogenic materials into three types, including organic materials, inorganic materials, and other materials. As for each type of chromogenic material, we discuss their detailed sensing strategies, sensing performance, and real sample applications. Moreover, current challenges and perspectives related to the colorimetry of heavy metal ions are also discussed in this review. The aim of this review is to help readers to better understand the principles of colorimetric methods for heavy metal ions and push the development of rapid detection of heavy metal ions.
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Shi J, Liu SX, Li JW, Liu YQ, Ma JX, Qi J, Chen LX, Zhou BY, Wang SJ, Yu PL. [Study on the reliability and validity of the Chinese Criteria of Health Scale for the elderly people]. ZHONGHUA YU FANG YI XUE ZA ZHI [CHINESE JOURNAL OF PREVENTIVE MEDICINE] 2022; 56:1809-1814. [PMID: 36536570 DOI: 10.3760/cma.j.cn112150-20220223-00170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Objective: To evaluate the reliability and validity of the Chinese Criteria of Health Scale for the elderly people. Methods: A cross-sectional study was performed among older adults of Meiyuan Community in Haidian District, Beijing and Nanwangkong Village in Qingzhou City,Shandong Province during July 2021. Using a cluster sampling method, totally 667 elderly people were investigated by face-to-face interview, using the scale which was formulated after two rounds of the Delphi method and pilot study. The overall scale includes physical health, mental health and social health subscales, including 9, 52 and 15 items, respectively. Four weeks after the survey, 56 elderly people were randomly selected and repeated the survey with the same method. The test-retest reliability, split-half reliability and internal consistency reliability of the scale were evaluated, and the validity was evaluated at the same time, including construct validity and content validity. Results: A total of 710 questionnaires were distributed and 667 valid questionnaires were obtained, with a total effective rate of 93.94%. The score of the overall scale was 79.79±16.22, the scores of the physical health, mental health, social health sub-scores were 41.64±9.76, 26.82±3.92 and 11.34±5.19, respectively. The scale had excellent reliability. In the test-retest reliability, the intraclass correlation coefficient (ICC) of the overall scale and each subscale were 0.766-0.861, and the weighted Kappa values were 0.762-0.817. The Spearman-Brown coefficient of the overall scale and each subscale in the split-half reliability were 0.722-0.855 (all P<0.001). The Cronbach's α coefficients of the overall scale of internal consistency reliability and each subscale were 0.748-0.899, and the Cronbach's α coefficients of each dimension were from 0.709 to 0.963(all P<0.001). At the same time, the scale had good construct validity and content validity. The correlation coefficients between the score of each dimension and its sub-scale were larger, from 0.641 to 0.873 (all P<0.05). The cumulative variance contribution rates of the scale and three subscales were all more than 50% of the approved standard. A total of 11 common factors were extracted, and all the load values of each item on the corresponding factors were ≥0.04. Conclusion: The Chinese Criteria of Health Scale for the elderly people has good validity and excellent reliability. It can be used as a basis for the scientific division of the health status of the elderly, the formulation of relevant policies by the government and the provision of appropriate health services for the elderly.
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Yi Y, Qi J, Chen D. Impact of population agglomeration in big cities on carbon emissions. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:86692-86706. [PMID: 35799006 DOI: 10.1007/s11356-022-21722-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Accepted: 06/25/2022] [Indexed: 06/15/2023]
Abstract
The study explored the influencing mechanism of population agglomeration in large cities on carbon emissions, including technological innovation, industrial structure, and transportation effects. Moreover, we attempt to explore the nonlinear impact of population agglomeration in large cities on carbon emissions. We used the panel data of 207 big cities with a permanent resident population of more than 1 million to study the relationship between population agglomeration and carbon emissions. We found that population agglomeration to big cities increased urban carbon emissions significantly. The results of the mechanism analysis showed that population agglomeration to big cities raised carbon emissions by the channel of industrial structure and transportation effects. The channel of technological innovation effect decreased carbon emissions but did not offset the growth of carbon emissions caused by industrial structure and transportation effects. Nonlinear estimation findings demonstrated that the impact of population agglomeration on carbon emissions was different in big cities with varying levels of population.
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