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Aparicio MA, Lucena C, García MJ, Ruiz-Castilla FJ, Jiménez-Adrián P, López-Berges MS, Prieto P, Alcántara E, Pérez-Vicente R, Ramos J, Romera FJ. The nonpathogenic strain of Fusarium oxysporum FO12 induces Fe deficiency responses in cucumber (Cucumis sativus L.) plants. PLANTA 2023; 257:50. [PMID: 36757472 PMCID: PMC9911487 DOI: 10.1007/s00425-023-04079-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Accepted: 01/18/2023] [Indexed: 05/16/2023]
Abstract
MAIN CONCLUSION FO12 strain enhances Fe deficiency responses in cucumber plants, probably through the production of ethylene and NO in the subapical regions of the roots. Rhizosphere microorganisms can elicit induced systemic resistance (ISR) in plants. This type of resistance involves complex mechanisms that confer protection to the plant against pathogen attack. Additionally, it has been reported by several studies that ISR and Fe deficiency responses are modulated by common pathways, involving some phytohormones and signaling molecules, like ethylene and nitric oxide (NO). The aim of this study was to determine whether the nonpathogenic strain of Fusarium oxysporum FO12 can induce Fe deficiency responses in cucumber (Cucumis sativus L.) plants. Our results demonstrate that the root inoculation of cucumber plants with the FO12 strain promotes plant growth after several days of cultivation, as well as rhizosphere acidification and enhancement of ferric reductase activity. Moreover, Fe-related genes, such as FRO1, IRT1 and HA1, are upregulated at certain times after FO12 inoculation either upon Fe-deficiency or Fe-sufficient conditions. Furthermore, it has been found that this fungus colonizes root cortical tissues, promoting the upregulation of ethylene synthesis genes and NO production in the root subapical regions. To better understand the effects of the FO12 strain on field conditions, cucumber plants were inoculated and cultivated in a calcareous soil under greenhouse conditions. The results obtained show a modification of some physiological parameters in the inoculated plants, such as flowering and reduction of tissue necrosis. Overall, the results suggest that the FO12 strain could have a great potential as a Fe biofertilizer and biostimulant.
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Affiliation(s)
- Miguel A Aparicio
- Departamento de Química Agrícola, Edafología y Microbiología, Edificio Severo Ochoa (C-6), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), University of Córdoba, 14014, Córdoba, Spain
| | - Carlos Lucena
- Departamento de Agronomía, Edificio Celestino Mutis (C-4), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), University of Córdoba, 14014, Córdoba, Spain.
| | - María J García
- Departamento de Agronomía, Edificio Celestino Mutis (C-4), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), University of Córdoba, 14014, Córdoba, Spain
| | - Francisco J Ruiz-Castilla
- Departamento de Química Agrícola, Edafología y Microbiología, Edificio Severo Ochoa (C-6), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), University of Córdoba, 14014, Córdoba, Spain
| | - Pablo Jiménez-Adrián
- Departamento de Química Agrícola, Edafología y Microbiología, Edificio Severo Ochoa (C-6), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), University of Córdoba, 14014, Córdoba, Spain
| | - Manuel S López-Berges
- Departamento de Genética, Edificio Gregor Mendel (C-5), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), University of Córdoba, 14014, Córdoba, Spain
| | - Pilar Prieto
- Departamento de Mejora Genética, Instituto de Agricultura Sostenible (IAS), Consejo Superior de Investigaciones Científicas (CSIC), 14004, Córdoba, Spain
| | - Esteban Alcántara
- Departamento de Agronomía, Edificio Celestino Mutis (C-4), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), University of Córdoba, 14014, Córdoba, Spain
| | - Rafael Pérez-Vicente
- Departamento de Botánica, Ecología y Fisiología Vegetal, Edificio Celestino Mutis (C-4), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), University of Córdoba, 14014, Córdoba, Spain
| | - José Ramos
- Departamento de Química Agrícola, Edafología y Microbiología, Edificio Severo Ochoa (C-6), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), University of Córdoba, 14014, Córdoba, Spain
| | - Francisco J Romera
- Departamento de Agronomía, Edificio Celestino Mutis (C-4), Campus de Excelencia Internacional Agroalimentario de Rabanales (ceiA3), University of Córdoba, 14014, Córdoba, Spain
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Chaudhary P, Agri U, Chaudhary A, Kumar A, Kumar G. Endophytes and their potential in biotic stress management and crop production. Front Microbiol 2022; 13:933017. [PMID: 36325026 PMCID: PMC9618965 DOI: 10.3389/fmicb.2022.933017] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2022] [Accepted: 09/12/2022] [Indexed: 11/21/2022] Open
Abstract
Biotic stress is caused by harmful microbes that prevent plants from growing normally and also having numerous negative effects on agriculture crops globally. Many biotic factors such as bacteria, fungi, virus, weeds, insects, and nematodes are the major constrains of stress that tends to increase the reactive oxygen species that affect the physiological and molecular functioning of plants and also led to the decrease in crop productivity. Bacterial and fungal endophytes are the solution to overcome the tasks faced with conventional farming, and these are environment friendly microbial commodities that colonize in plant tissues without causing any damage. Endophytes play an important role in host fitness, uptake of nutrients, synthesis of phytohormone and diminish the injury triggered by pathogens via antibiosis, production of lytic enzymes, secondary metabolites, and hormone activation. They are also reported to help plants in coping with biotic stress, improving crops and soil health, respectively. Therefore, usage of endophytes as biofertilizers and biocontrol agent have developed an eco-friendly substitute to destructive chemicals for plant development and also in mitigation of biotic stress. Thus, this review highlighted the potential role of endophytes as biofertilizers, biocontrol agent, and in mitigation of biotic stress for maintenance of plant development and soil health for sustainable agriculture.
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Affiliation(s)
- Parul Chaudhary
- Govind Ballabh Pant University of Agriculture and Technology, Pantnagar, Uttarakhand, India
| | - Upasana Agri
- Govind Ballabh Pant University of Agriculture and Technology, Pantnagar, Uttarakhand, India
| | | | - Ashish Kumar
- Govind Ballabh Pant University of Agriculture and Technology, Pantnagar, Uttarakhand, India
| | - Govind Kumar
- Indian Council of Agricultural Research (ICAR)-Central Institute for Subtropical Horticulture, Lucknow, India
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Iida Y, Ogata A, Kanda H, Nishi O, Sushida H, Higashi Y, Tsuge T. Biocontrol Activity of Nonpathogenic Strains of Fusarium oxysporum: Colonization on the Root Surface to Overcome Nutritional Competition. Front Microbiol 2022; 13:826677. [PMID: 35154061 PMCID: PMC8828976 DOI: 10.3389/fmicb.2022.826677] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 01/04/2022] [Indexed: 11/13/2022] Open
Abstract
Fusarium oxysporum is a soil-borne fungal pathogen that causes vascular wilts in a wide variety of crops. Certain nonpathogenic strains of F. oxysporum are known to protect crops against F. oxysporum pathogens. We assessed the biocontrol activities of nonpathogenic mutants of F. oxysporum ff. spp. melonis and lycopersici generated by disruption of the FOW2 gene, which encodes a Zn(II)2Cys6-type transcriptional regulator essential for their pathogenicity. Pre-inoculation of melon or tomato roots with strain ΔFOW2 conidia markedly reduced disease incidence caused by the parental wild-type strain in a concentration-dependent manner of conidial suspensions of ΔFOW2 strains. The biocontrol effect caused by the ΔFOW2 pre-inoculation lasted for at least 7 days. Pre-inoculation of melon roots with the wild-type or ΔFOW2 strain of F. oxysporum f. sp. lycopersici and nonpathogenic F. oxysporum strain also led to biocontrol activity against F. oxysporum f. sp. melonis, indicating that the biocontrol activity of ΔFOW2 strains is due to its nonpathogenic nature, not to the FOW2 disfunction. Conidial germination and hyphal elongation of only the wild-type strain were inhibited on melon root surface pre-inoculated with conidia of strains nonpathogenic to melon plants. Expression of defense-related genes was not significantly induced in roots and aboveground parts of melon seedlings preinoculated with ΔFOW2 conidia. Carbon source competition assay showed that nonpathogenic strains competed with the wild-type strain for a carbon source in soil. Strain ΔFOW2 also competed with the oomycete pathogen Pythium aphanidermatum for carbon source and protected melon plants from P. aphanidermatum. Our results suggest that the biocontrol activity of the nonpathogenic F. oxysporum strains used in this study mainly depends on their extensive colonization of the root surface and outcompeting pathogens for nutrients.
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Affiliation(s)
- Yuichiro Iida
- National Agriculture and Food Research Organization, Tsu, Japan
| | - Aya Ogata
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
| | - Hiroki Kanda
- National Agriculture and Food Research Organization, Tsu, Japan
- Laboratory of Plant Protection and Biotechnology, Kinki University, Nara, Japan
| | - Oumi Nishi
- National Agriculture and Food Research Organization, Tsu, Japan
| | | | - Yumiko Higashi
- National Agriculture and Food Research Organization, Tsu, Japan
| | - Takashi Tsuge
- Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
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Jin L, Yang L, Li W, Xu D, Yang N, Li G, Wan P. Diversity and Biocontrol Potential of Culturable Endophytic Fungi in Cotton. Front Microbiol 2021; 12:698930. [PMID: 34484142 PMCID: PMC8415002 DOI: 10.3389/fmicb.2021.698930] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Accepted: 07/19/2021] [Indexed: 11/13/2022] Open
Abstract
Healthy cotton samples were collected and 93 endophytic fungal strains were isolated: 23 strains from the roots and 70 strains from the stems. Morphological characterization and ITS sequence analysis were used for the identification of these isolates. The results showed that the 93 strains including 20 species were highly diverse in terms of their taxonomy. Simpson's and Shannon's diversity indices were 0.915 and 3.848, respectively. Fusarium and Alternaria were the two dominant genera, constituting 19.4% of the total strains. Then, 72 spore-producing strains were tested for the suppression of cotton Verticillium wilt (CVW) caused by Verticillium dahliae in a greenhouse. Five strains exhibited effective suppression of CVW with average efficacy values higher than 50%. One of the effective strains, namely, Fusarium proliferatum 10R-7, was selected for the investigation of the role of fusaric acid, a secondary metabolite of strain 10R-7, in the suppression of V. dahliae and CVW. The results showed that F. proliferatum 10R-7 could produce fusaric acid, and this metabolite exhibited 100% inhibition of mycelial growth of V. dahliae at concentrations higher than 20 μg/ml. However, fusaric acid at 2.5 to 80 μg/ml was not effective in the suppression of CVW, compared with the control treatment with V. dahliae alone. F. proliferatum 10R-7 was labeled with green fluorescent protein (GFP), and the GFP-tagged strain was found to be able to colonize inside the taproots of cotton, suggesting that F. proliferatum 10R-7 is a true endophyte of cotton and endophytic colonization may play a role in the suppression of infection of cotton by V. dahliae.
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Affiliation(s)
- Lirong Jin
- State Key Laboratory of Agricultural Microbiology, Key Laboratory of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, China.,Key Laboratory of Integrated Pest Management Crops in Central China, Ministry of Agriculture, Hubei Academy of Agricultural Sciences, Wuhan, China.,Hubei Key Laboratory of Crop Disease, Insect Pests and Weeds Control, Plant Protection, Soil and Fertilizer Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, China
| | - Long Yang
- State Key Laboratory of Agricultural Microbiology, Key Laboratory of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, China
| | - Wenjing Li
- Key Laboratory of Integrated Pest Management Crops in Central China, Ministry of Agriculture, Hubei Academy of Agricultural Sciences, Wuhan, China.,Hubei Key Laboratory of Crop Disease, Insect Pests and Weeds Control, Plant Protection, Soil and Fertilizer Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, China
| | - Dong Xu
- Key Laboratory of Integrated Pest Management Crops in Central China, Ministry of Agriculture, Hubei Academy of Agricultural Sciences, Wuhan, China.,Hubei Key Laboratory of Crop Disease, Insect Pests and Weeds Control, Plant Protection, Soil and Fertilizer Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, China
| | - Nina Yang
- Key Laboratory of Integrated Pest Management Crops in Central China, Ministry of Agriculture, Hubei Academy of Agricultural Sciences, Wuhan, China.,Hubei Key Laboratory of Crop Disease, Insect Pests and Weeds Control, Plant Protection, Soil and Fertilizer Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, China
| | - Guoqing Li
- State Key Laboratory of Agricultural Microbiology, Key Laboratory of Plant Pathology of Hubei Province, Huazhong Agricultural University, Wuhan, China
| | - Peng Wan
- Key Laboratory of Integrated Pest Management Crops in Central China, Ministry of Agriculture, Hubei Academy of Agricultural Sciences, Wuhan, China.,Hubei Key Laboratory of Crop Disease, Insect Pests and Weeds Control, Plant Protection, Soil and Fertilizer Research Institute, Hubei Academy of Agricultural Sciences, Wuhan, China
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The Non-Pathogenic Fusarium oxysporum Fo47 Induces Distinct Responses in Two Closely Related Solanaceae Plants against the Pathogen Verticillium dahliae. J Fungi (Basel) 2021; 7:jof7050344. [PMID: 33925134 PMCID: PMC8146752 DOI: 10.3390/jof7050344] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Revised: 04/24/2021] [Accepted: 04/27/2021] [Indexed: 11/16/2022] Open
Abstract
The non-pathogenic Fusarium oxysporum Fo47 is able to protect Capsicum annuum (pepper) but not in Solanum lycopersicum (tomato) against the pathogen Verticillium dahliae. Transcriptomics of the plant during the interaction with Fo47 shows the induction of distinct set of genes in pepper and tomato. The number of differentially expressed (DE) genes in pepper (231 DE genes) is greater than the number of DE genes in tomato (39 DE genes) at 2 days after the treatment with Fo47. Ethylene related genes were present among the DE genes in both plants, and the up-regulation of ethylene biosynthetic genes was observed to be triggered during the interaction of both plants with Fo47. The treatment with MCP (1-Methylcyclopropene, an ethylene-competitive inhibitor) reduced the Fo47 protection in pepper against Verticillium dahliae. Intriguingly, Fo47 was able to protect the ethylene-insensitive tomato mutant Never-ripe (Nr) against Verticillium dahliae, but not the tomato wilt type cv Pearson. Overall, ethylene is shown to be an important player in the response to Fo47, but its role depends on the host species.
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Murali M, Naziya B, Ansari MA, Alomary MN, AlYahya S, Almatroudi A, Thriveni MC, Gowtham HG, Singh SB, Aiyaz M, Kalegowda N, Lakshmidevi N, Amruthesh KN. Bioprospecting of Rhizosphere-Resident Fungi: Their Role and Importance in Sustainable Agriculture. J Fungi (Basel) 2021; 7:314. [PMID: 33919629 PMCID: PMC8072672 DOI: 10.3390/jof7040314] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Revised: 04/09/2021] [Accepted: 04/14/2021] [Indexed: 01/28/2023] Open
Abstract
Rhizosphere-resident fungi that are helpful to plants are generally termed as 'plant growth promoting fungi' (PGPF). These fungi are one of the chief sources of the biotic inducers known to give their host plants numerous advantages, and they play a vital role in sustainable agriculture. Today's biggest challenge is to satisfy the rising demand for crop protection and crop yield without harming the natural ecosystem. Nowadays, PGPF has become an eco-friendly way to improve crop yield by enhancing seed germination, shoot and root growth, chlorophyll production, and fruit yield, etc., either directly or indirectly. The mode of action of these PGPF includes the solubilization and mineralization of the essential micro- and macronutrients needed by plants to regulate the balance for various plant processes. PGPF produce defense-related enzymes, defensive/volatile compounds, and phytohormones that control pathogenic microbes' growth, thereby assisting the plants in facing various biotic and abiotic stresses. Therefore, this review presents a holistic view of PGPF as efficient natural biofertilizers to improve crop plants' growth and resistance.
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Affiliation(s)
- Mahadevamurthy Murali
- Applied Plant Pathology Laboratory, Department of Studies in Botany, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India; (M.M.); (B.N.); (N.K.)
| | - Banu Naziya
- Applied Plant Pathology Laboratory, Department of Studies in Botany, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India; (M.M.); (B.N.); (N.K.)
| | - Mohammad Azam Ansari
- Department of Epidemic Disease Research, Institutes for Research and Medical Consultations (IRMC), Imam Abdulrahman Bin Faisal University, Dammam 31441, Saudi Arabia;
| | - Mohammad N. Alomary
- National Center for Biotechnology, Life Science and Environmental Research Institute, King Abdulaziz City for Science and Technology, Riyadh P.O. Box 6086, Saudi Arabia; (M.N.A.); (S.A.)
| | - Sami AlYahya
- National Center for Biotechnology, Life Science and Environmental Research Institute, King Abdulaziz City for Science and Technology, Riyadh P.O. Box 6086, Saudi Arabia; (M.N.A.); (S.A.)
| | - Ahmad Almatroudi
- Department of Medical Laboratories, College of Applied Medical Sciences, Qassim University, Qassim 51431, Saudi Arabia
| | - M. C. Thriveni
- Central Sericultural Germplasm Resources Centre, Central Silk Board, Ministry of Textiles, Thally Road, TVS Nagar, Hosur 635109, Tamil Nadu, India;
| | | | - Sudarshana Brijesh Singh
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India; (H.G.G.); (S.B.S.); (M.A.)
| | - Mohammed Aiyaz
- Department of Studies in Biotechnology, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India; (H.G.G.); (S.B.S.); (M.A.)
| | - Nataraj Kalegowda
- Applied Plant Pathology Laboratory, Department of Studies in Botany, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India; (M.M.); (B.N.); (N.K.)
| | - Nanjaiah Lakshmidevi
- Department of Studies in Microbiology, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India;
| | - Kestur Nagaraj Amruthesh
- Applied Plant Pathology Laboratory, Department of Studies in Botany, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India; (M.M.); (B.N.); (N.K.)
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de Lamo FJ, Takken FLW. Biocontrol by Fusarium oxysporum Using Endophyte-Mediated Resistance. FRONTIERS IN PLANT SCIENCE 2020; 11:37. [PMID: 32117376 PMCID: PMC7015898 DOI: 10.3389/fpls.2020.00037] [Citation(s) in RCA: 77] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2019] [Accepted: 01/13/2020] [Indexed: 05/06/2023]
Abstract
Interactions between plants and the root-colonizing fungus Fusarium oxysporum (Fo) can be neutral, beneficial, or detrimental for the host. Fo is infamous for its ability to cause wilt, root-, and foot-rot in many plant species, including many agronomically important crops. However, Fo also has another face; as a root endophyte, it can reduce disease caused by vascular pathogens such as Verticillium dahliae and pathogenic Fo strains. Fo also confers protection to root pathogens like Pythium ultimum, but typically not to pathogens attacking above-ground tissues such as Botrytis cinerea or Phytophthora capsici. Endophytes confer biocontrol either directly by interacting with pathogens via mycoparasitism, antibiosis, or by competition for nutrients or root niches, or indirectly by inducing resistance mechanisms in the host. Fo endophytes such as Fo47 and CS-20 differ from Fo pathogens in their effector gene content, host colonization mechanism, location in the plant, and induced host-responses. Whereas endophytic strains trigger localized cell death in the root cortex, and transiently induce immune signaling and papilla formation, these responses are largely suppressed by pathogenic Fo strains. The ability of pathogenic strains to compromise immune signaling and cell death is likely attributable to their host-specific effector repertoire. The lower number of effector genes in endophytes as compared to pathogens provides a means to distinguish them from each other. Co-inoculation of a biocontrol-conferring Fo and a pathogenic Fo strain on tomato reduces disease, and although the pathogen still colonizes the xylem vessels this has surprisingly little effect on the xylem sap proteome composition. In this tripartite interaction the accumulation of just two PR proteins, NP24 (a PR-5) and a β-glucanase, was affected. The Fo-induced resistance response in tomato appears to be distinct from induced systemic resistance (ISR) or systemic acquired resistance (SAR), as the phytohormones jasmonate, ethylene, and salicylic acid are not required. In this review, we summarize our molecular understanding of Fo-induced resistance in a model and identify caveats in our knowledge.
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Affiliation(s)
| | - Frank L. W. Takken
- Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam, Netherlands
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Sefloo NG, Wieczorek K, Steinkellner S, Hage-Ahmed K. Serendipita Species Trigger Cultivar-Specific Responses to Fusarium Wilt in Tomato. AGRONOMY-BASEL 2019; 9:595. [PMID: 31857912 PMCID: PMC6923139 DOI: 10.3390/agronomy9100595] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The endophytic fungi Serendipita indica and S. vermifera have recently gained increasing attention due to their beneficial effects on plant growth and plant health. Little is known about other species, such as S. williamsii and S. herbamans. To test their biocontrol and growth-promoting potential, susceptible and tolerant tomato cultivars (Kremser Perle and Micro-Tom, respectively) were inoculated with S. williamsii, S. herbamans, S. indica, or S. vermifera and challenged with the soilborne pathogen Fusarium oxysporum f. sp. lycopersici (Fol) in greenhouse experiments. Furthermore, in vitro assays on the direct inhibitory effects of Serendipita spp. against Fol were performed. Negative effects of Fol on phenological growth in the susceptible cultivar were alleviated by all four applied Serendipita spp. Apart from these similar effects on biometric parameters, disease incidence was only reduced by S. herbamans and S. vermifera. In the tolerant cultivar, disease parameters remained unaffected although shoot dry mass was negatively affected by S. vermifera. Direct effects of Serendipita spp. against Fol were not evident in the in vitro assays indicating an indirect effect via the host plant. Our results highlight the importance of identifying cultivar-specific effects in pathogen–endophyte–plant interactions to determine the most beneficial combinations.
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Constantin ME, de Lamo FJ, Vlieger BV, Rep M, Takken FLW. Endophyte-Mediated Resistance in Tomato to Fusarium oxysporum Is Independent of ET, JA, and SA. FRONTIERS IN PLANT SCIENCE 2019; 10:979. [PMID: 31417594 PMCID: PMC6685397 DOI: 10.3389/fpls.2019.00979] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Accepted: 07/11/2019] [Indexed: 05/21/2023]
Abstract
Root endophytes can confer resistance against plant pathogens by direct antagonism or via the host by triggering induced resistance. The latter response typically relies on jasmonic acid (JA)/ethylene (ET)-depended signaling pathways, but can also be triggered via salicylic acid (SA)-dependent signaling pathways. Here, we set out to determine if endophyte-mediated resistance (EMR), conferred by the Fusarium endophyte Fo47, against Fusarium wilt disease in tomato is mediated via SA, ET or JA. To test the contribution of SA, ET, and JA in EMR we performed bioassays with Fo47 and Fusarium oxysporum f. sp. lycopersici in tomato plants impaired in SA accumulation (NahG), JA biosynthesis (def1) or ET-production (ACD) and -sensing (Nr). We observed that the colonization pattern of Fo47 in stems of wildtype plants was indistinguishable from that of the hormone mutants. Surprisingly, EMR was not compromised in the lines affected in JA, ET, or SA signaling. The independence of EMR on SA, JA, and ET implies that this induced resistance-response against Fusarium wilt disease is distinct from the classical Induced Systemic Resistance (ISR) response, providing exciting possibilities for control of wilt diseases independent of conventional defense pathways.
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Yang M, Mavrodi DV, Thomashow LS, Weller DM. Differential Response of Wheat Cultivars to Pseudomonas brassicacearum and Take-All Decline Soil. PHYTOPATHOLOGY 2018; 108:1363-1372. [PMID: 29905506 PMCID: PMC6483097 DOI: 10.1094/phyto-01-18-0024-r] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
2,4-Diacetylphloroglucinol (DAPG)-producing Pseudomonas spp. in the P. fluorescens complex are primarily responsible for a natural suppression of take-all of wheat known as take-all decline (TAD) in many fields in the United States. P. brassicacearum, the most common DAPG producer found in TAD soils in the Pacific Northwest (PNW) of the United States, has biological control, growth promoting and phytotoxic activities. In this study, we explored how the wheat cultivar affects the level of take-all suppression when grown in a TAD soil, and how cultivars respond to colonization by P. brassicacearum. Three cultivars (Tara, Finley, and Buchanan) supported similar rhizosphere population sizes of P. brassicacearum when grown in a TAD soil, however they developed significantly different amounts of take-all. Cultivars Tara and Buchanan developed the least and most take-all, respectively, and Finley showed an intermediate amount of disease. However, when grown in TAD soil that was pasteurized to eliminate both DAPG producers and take-all suppression, all three cultivars were equally susceptible to take-all. The three cultivars also responded differently to the colonization and phytotoxicity of P. brassicacearum strains Q8r1-96 and L5.1-96, which are characteristic of DAPG producers in PNW TAD soils. Compared with cultivar Tara, cultivar Buchanan showed significantly reduced seedling emergence and root growth when colonized by P. brassicacearum, and the response of Finley was intermediate. However, all cultivars emerged equally when treated with a DAPG-deficient mutant of Q8r1-96. Our results indicate that wheat cultivars grown in a TAD soil modulate both the robustness of take-all suppression and the potential phytotoxicity of the antibiotic DAPG.
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Affiliation(s)
| | - Dmitri V. Mavrodi
- Department of Cell and Molecular Biology, The University of Southern Mississippi, Hattiesburg 39406
| | - Linda S. Thomashow
- U.S. Department of Agriculture, Agricultural Research Service, Wheat Health, Genetics and Quality Research Unit, Pullman, WA 99164-6430
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Guijarro B, Larena I, Melgarejo P, De Cal A. Surfactant effects on wettability of Penicillium frequentans formulations to improve brown rot biocontrol. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2018; 98:5832-5840. [PMID: 29770458 DOI: 10.1002/jsfa.9133] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Revised: 05/11/2018] [Accepted: 05/14/2018] [Indexed: 06/08/2023]
Abstract
BACKGROUND Penicillium frequentans can be used in the management of brown rot caused by Monilinia spp. Competition is the primary mode of biocontrol activity of P. frequentans, which must therefore cover most of fruit surface to avoid pathogen infection. Our objective was to optimize the efficacy of P. frequentans by maximizing fruit surface coverage and retention with the antagonist formulation by surfactant incorporation. RESULTS Sixteen surfactants were assessed for the management of brown rot at 3-5 different concentrations. Nine surfactants increased the droplet surface up to 2.5 times compared with water on an inert surface, with or without the presence of P. frequentans in each drop. Eight surfactants increased P. frequentans on the fruit surface, enhancing colony forming units after run off or lateral spray application uptake by 50% compared to the control without surfactants. But only some doses of sodium carboxymethyl cellulose, gelatin, Tween 20, sorbitan alkyl esters, synthetic latex, polyethylene glycol isotridecyl ether, and hydroxypropyl methylcellulose could show the same covered fruit surface after run off or lateral spray application. There were also no phytotoxic side-effects on five different species of stone fruit. CONCLUSIONS The efficacy of P. frequentans dry conidia can be enhanced by optimizing the composition of the formulation with surfactants. © 2018 Society of Chemical Industry.
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Affiliation(s)
- Belén Guijarro
- Department of Plant Protection, Phytopathology Fungi Unit, National Institute for Agriculture and Food Research, INIA, Madrid, Spain
| | - Inmaculada Larena
- Department of Plant Protection, Phytopathology Fungi Unit, National Institute for Agriculture and Food Research, INIA, Madrid, Spain
| | - Paloma Melgarejo
- Department of Plant Protection, Phytopathology Fungi Unit, National Institute for Agriculture and Food Research, INIA, Madrid, Spain
| | - Antonieta De Cal
- Department of Plant Protection, Phytopathology Fungi Unit, National Institute for Agriculture and Food Research, INIA, Madrid, Spain
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12
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Han L, Pu T, Wang X, Liu B, Wang Y, Feng J, Zhang X. Optimization of a protective medium for enhancing the viability of freeze-dried Bacillus amyloliquefaciens B1408 based on response surface methodology. Cryobiology 2018; 81:101-106. [DOI: 10.1016/j.cryobiol.2018.02.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2017] [Revised: 01/28/2018] [Accepted: 02/06/2018] [Indexed: 10/18/2022]
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13
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Mousa WK, Schwan AL, Raizada MN. Characterization of Antifungal Natural Products Isolated from Endophytic Fungi of Finger Millet (Eleusine coracana). Molecules 2016; 21:E1171. [PMID: 27598120 PMCID: PMC6273740 DOI: 10.3390/molecules21091171] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2016] [Revised: 08/19/2016] [Accepted: 08/27/2016] [Indexed: 02/01/2023] Open
Abstract
Finger millet is an ancient African-Indian crop that is resistant to many pathogens including the fungus, Fusarium graminearum. We previously reported the first isolation of putative fungal endophytes from finger millet and showed that the crude extracts of four strains had anti-Fusarium activity. However, active compounds were isolated from only one strain. The objectives of this study were to confirm the endophytic lifestyle of the three remaining anti-Fusarium isolates, to identify the major underlying antifungal compounds, and to initially characterize the mode(s) of action of each compound. Results of confocal microscopy and a plant disease assay were consistent with the three fungal strains behaving as endophytes. Using bio-assay guided fractionation and spectroscopic structural elucidation, three anti-Fusarium secondary metabolites were purified and characterized. These molecules were not previously reported to derive from fungi nor have antifungal activity. The purified antifungal compounds were: 5-hydroxy 2(3H)-benzofuranone, dehydrocostus lactone (guaianolide sesquiterpene lactone), and harpagoside (an iridoide glycoside). Light microscopy and vitality staining were used to visualize the in vitro interactions between each compound and Fusarium; the results suggested a mixed fungicidal/fungistatic mode of action. We conclude that finger millet possesses fungal endophytes that can synthesize anti-fungal compounds not previously reported as bio-fungicides against F. graminearum.
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Affiliation(s)
- Walaa Kamel Mousa
- Department of Plant Agriculture, University of Guelph, Guelph, ON N1G 2W1, Canada.
- Department of Pharmacognosy, Mansoura University, Mansoura 35516, Egypt.
| | - Adrian L Schwan
- Department of Chemistry, University of Guelph, Guelph, ON N1G 2W1, Canada.
| | - Manish N Raizada
- Department of Plant Agriculture, University of Guelph, Guelph, ON N1G 2W1, Canada.
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14
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Shcherbakova LA, Odintsova TI, Stakheev AA, Fravel DR, Zavriev SK. Identification of a Novel Small Cysteine-Rich Protein in the Fraction from the Biocontrol Fusarium oxysporum Strain CS-20 that Mitigates Fusarium Wilt Symptoms and Triggers Defense Responses in Tomato. FRONTIERS IN PLANT SCIENCE 2016; 6:1207. [PMID: 26779237 PMCID: PMC4703993 DOI: 10.3389/fpls.2015.01207] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2015] [Accepted: 12/15/2015] [Indexed: 05/06/2023]
Abstract
The biocontrol effect of the non-pathogenic Fusarium oxysporum strain CS-20 against the tomato wilt pathogen F. oxysporum f. sp. lycopersici (FOL) has been previously reported to be primarily plant-mediated. This study shows that CS-20 produces proteins, which elicit defense responses in tomato plants. Three protein-containing fractions were isolated from CS-20 biomass using size exclusion chromatography. Exposure of seedling roots to one of these fractions prior to inoculation with pathogenic FOL strains significantly reduced wilt severity. This fraction initiated an ion exchange response in cultured tomato cells resulting in a reversible alteration of extracellular pH; increased tomato chitinase activity, and induced systemic resistance by enhancing PR-1 expression in tomato leaves. Two other protein fractions were inactive in seedling protection. The main polypeptide (designated CS20EP), which was specifically present in the defense-inducing fraction and was not detected in inactive protein fractions, was identified. The nucleotide sequence encoding this protein was determined, and its complete amino acid sequence was deduced from direct Edman degradation (25 N-terminal amino acid residues) and DNA sequencing. The CS20EP was found to be a small basic cysteine-rich protein with a pI of 9.87 and 23.43% of hydrophobic amino acid residues. BLAST search in the NCBI database showed that the protein is new; however, it displays 48% sequence similarity with a hypothetical protein FGSG_10784 from F. graminearum strain PH-1. The contribution of CS20EP to elicitation of tomato defense responses resulting in wilt mitigating is discussed.
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Affiliation(s)
- Larisa A. Shcherbakova
- Laboratory of Physiological Plant Pathology, All-Russian Research Institute of PhytopathologyMoscow, Russia
| | - Tatyana I. Odintsova
- Laboratory of Molecular-Genetic Bases of Plant Immunity, Vavilov Institute of General GeneticsMoscow, Russia
| | - Alexander A. Stakheev
- Laboratory of Molecular Diagnostic, M. M. Shemyakin and Yu. A. Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of SciencesMoscow, Russia
| | - Deborah R. Fravel
- Crop Production and Protection, United States Department of Agriculture, Agricultural Research ServiceBeltsville, MD, USA
| | - Sergey K. Zavriev
- Laboratory of Molecular Diagnostic, M. M. Shemyakin and Yu. A. Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of SciencesMoscow, Russia
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15
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Pu X, Xie B, Li P, Mao Z, Ling J, Shen H, Zhang J, Huang N, Lin B. Analysis of the defence-related mechanism in cucumber seedlings in relation to root colonization by nonpathogenic Fusarium oxysporum CS-20. FEMS Microbiol Lett 2014; 355:142-51. [PMID: 24810367 DOI: 10.1111/1574-6968.12461] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2014] [Revised: 04/21/2014] [Accepted: 05/05/2014] [Indexed: 11/28/2022] Open
Abstract
A defence response can be induced by nonpathogenic Fusarium oxysporum CS-20 in several crops, but the molecular mechanism has not been clearly demonstrated. In the present study, we analysed the defence mechanism of a susceptible cucumber cultivar (Cucumis sativus L. 9930) against a pathogen (F. oxysporum f. sp. cucumerinum) through the root precolonization of CS-20. A challenge inoculation assay indicated that the disease severity index (DSI) was reduced, ranging from 18.83 to 61.67 in comparison with the pathogen control. Root colonization analysis indicated that CS-20 clearly did not appear to influence the growth of cucumber seedlings. Quantitative reverse-transcriptase polymerase chain reaction (qRT-PCR) revealed that CS-20-mediated defence response was activated by PR3, LOX1 and PAL1 and the pathogen-mediated resistance response was regulated by PR1 and PR3. Moreover, both nonpathogenic and pathogenic F. oxysporum were able to upregulate NPR1 expression. In contrast to a pathogen, CS-20 can activate the Ca(2+) /CaM signal transduction pathway, and the gene expression of both CsCam7 and CsCam12 increased significantly. The gene expression analysis indicated that CS-20 strongly enhanced the expression of PR3, LOX1, PAL1, NPR1, CsCam7 and CsCam12 after inoculation. Overall, the defence response induced by CS-20 can be controlled by multiple genes in the cucumber plant.
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Affiliation(s)
- Xiaoming Pu
- College of Agriculture, Guangxi University, Nanning, China; Key Laboratory of New Technique for Plant Protection in Guangdong, Institute of Plant Protection, Guangdong Academy of Agricultural Sciences, Guangzhou, China
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16
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Mehta CM, Palni U, Franke-Whittle IH, Sharma AK. Compost: its role, mechanism and impact on reducing soil-borne plant diseases. WASTE MANAGEMENT (NEW YORK, N.Y.) 2014; 34:607-22. [PMID: 24373678 DOI: 10.1016/j.wasman.2013.11.012] [Citation(s) in RCA: 90] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2013] [Revised: 11/28/2013] [Accepted: 11/28/2013] [Indexed: 05/14/2023]
Abstract
Soil-borne plant pathogens are responsible for causing many crop plant diseases, resulting in significant economic losses. Compost application to agricultural fields is an excellent natural approach, which can be taken to fight against plant pathogens. The application of organic waste products is also an environmentally friendly alternative to chemical use, which unfortunately is the most common approach in agriculture today. This review analyses pioneering and recent compost research, and also the mechanisms and mode of action of compost microbial communities for reducing the activity of plant pathogens in agricultural crops. In addition, an approach for improving the quality of composts through the microbial communities already present in the compost is presented. Future agricultural practices will almost definitely require integrated research strategies to help combat plant diseases.
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Affiliation(s)
- C M Mehta
- Department of Biological Sciences, College of Basic Science and Humanities, G. B. P. U. A. & T. Pantnagar, U.S. Nagar, Uttarakhand, India; Department of Botany, D.S.B. Campus, Kumaun University Nainital, Uttarakhand, India
| | - Uma Palni
- Department of Botany, D.S.B. Campus, Kumaun University Nainital, Uttarakhand, India
| | - I H Franke-Whittle
- Leopold-Franzens University, Institute of Microbiology, Technikerstraße 25, 6020 Innsbruck, Austria
| | - A K Sharma
- Department of Biological Sciences, College of Basic Science and Humanities, G. B. P. U. A. & T. Pantnagar, U.S. Nagar, Uttarakhand, India.
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17
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Wang C, Lin Y, Lin Y, Chung W. Modified primers for the identification of nonpathogenic Fusarium oxysporum isolates that have biological control potential against Fusarium wilt of cucumber in Taiwan. PLoS One 2013; 8:e65093. [PMID: 23762289 PMCID: PMC3676385 DOI: 10.1371/journal.pone.0065093] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2012] [Accepted: 04/21/2013] [Indexed: 11/24/2022] Open
Abstract
Previous investigations demonstrated that Fusarium oxysporum (Fo), which is not pathogenic to cucumbers, could serve as a biological control agent for managing Fusarium wilt of cucumber caused by Fo f. sp. cucumerinum (Foc) in Taiwan. However, thus far it has not been possible to separate the populations of pathogenic Fo from the nonpathogenic isolates that have biological control potential through their morphological characteristics. Although these two populations can be distinguished from one another using a bioassay, the work is laborious and time-consuming. In this study, a fragment of the intergenic spacer (IGS) region of ribosomal DNA from an Fo biological control agent, Fo366, was PCR-amplified with published general primers, FIGS11/FIGS12 and sequenced. A new primer, NPIGS-R, which was designed based on the IGS sequence, was paired with the FIGS11 primer. These primers were then evaluated for their specificity to amplify DNA from nonpathogenic Fo isolates that have biological control potential. The results showed that the modified primer pair, FIGS11/NPIGS-R, amplified a 500-bp DNA fragment from five of seven nonpathogenic Fo isolates. These five Fo isolates delayed symptom development of cucumber Fusarium wilt in greenhouse bioassay tests. Seventy-seven Fo isolates were obtained from the soil and plant tissues and then subjected to amplification using the modified primer pair; six samples showed positive amplification. These six isolates did not cause symptoms on cucumber seedlings when grown in peat moss infested with the isolates and delayed disease development when the same plants were subsequently inoculated with a virulent isolate of Foc. Therefore, the modified primer pair may prove useful for the identification of Fo isolates that are nonpathogenic to cucumber which can potentially act as biocontrol agents for Fusarium wilt of cucumber.
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Affiliation(s)
- Chaojen Wang
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan
| | - Yisheng Lin
- Department of Biotechnology, Asia University, Wufeng, Taichung, Taiwan
| | - Yinghong Lin
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan
| | - Wenhsin Chung
- Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan
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18
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Otto-Hanson LK, Grabau Z, Rosen C, Salomon CE, Kinkel LL. Pathogen variation and urea influence selection and success of Streptomyces mixtures in biological control. PHYTOPATHOLOGY 2013; 103:34-42. [PMID: 23035630 DOI: 10.1094/phyto-06-12-0129-r] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Success in biological control of plant diseases remains inconsistent in the field. A collection of well-characterized Streptomyces antagonists (n = 19 isolates) was tested for their capacities to inhibit pathogenic Streptomyces scabies (n = 15 isolates). There was significant variation among antagonists in ability to inhibit pathogen isolates and among pathogens in their susceptibility to inhibition. Only one antagonist could inhibit all pathogens, and antagonist-pathogen interactions were highly specific, highlighting the limitations of single-strain inoculum in biological control. However, the collection of pathogens could be inhibited by several combinations of antagonists, suggesting the potential for successful antagonist mixtures. Urea generally increased effectiveness of antagonists at inhibiting pathogens in vitro (increased mean inhibition zones) but its specific effects varied among antagonist-pathogen combinations. In greenhouse trials, urea enhanced the effectiveness of antagonist mixtures relative to individual antagonists in controlling potato scab. Although antagonist mixtures were frequently antagonistic in the absence of urea, all n= 2 and n = 3 antagonist-isolate combinations were synergistic in the presence of urea. This work provides insights into the efficacy of single- versus multiple-strain inocula in biological control and on the potential for nutrients to influence mixture success.
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Affiliation(s)
- L K Otto-Hanson
- Department of Plant Pathology, University of Minnesota, St. Paul 55108, USA.
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19
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Huang X, Shi D, Sun F, Lu H, Liu J, Wu W. Efficacy of sludge and manure compost amendments against Fusarium wilt of cucumber. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2012; 19:3895-905. [PMID: 22729873 DOI: 10.1007/s11356-012-1025-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2011] [Accepted: 06/04/2012] [Indexed: 05/04/2023]
Abstract
Fusarium wilt of cucumber caused by the fungus, Fusarium oxysporum, is one of the most destructive soilborne diseases and can result in serious economic loss. No efficient fungicide is currently available to control the disease. The aim of this study was to examine the disease suppression ability of pig manure and sludge composts in peat-based container media and explore the possible disease suppression mechanisms. Pig manure and sewage sludge compost were made in laboratory-scale tanks. Plant growth media were formulated with peat mixture and compost (or 60 °C heated compost) in a 4:1 ratio (v/v). Cucumber seedlings were artificially inoculated with F. oxysporum conidia (5 × 10(5) conidia mL(-1)) by the root-dip method. Cucumber Fusarium wilt was effectively suppressed in sludge compost-amended media, while the disease suppression effect of pig manure compost was limited. The ammonia levels in the manure compost-amended media were significantly higher than those of sludge compost-amended media, which could explain its lower disease suppression ability. Heated composts behaved similarly with respect to disease suppression. Adding composts increased microbial biomass, microbial activity, and the microbial diversity of the growth media. PCR-DGGE results indicated that the fungal community had a significant correlation to the disease severity. The artificially inoculated pathogen was retrieved in all treatments and one possible biocontrol agent was identified as a strain of F. oxysporum by phylogenetic analyses. The results indicated that the sludge compost used in this study could be applied as a method for biocontrol of cucumber Fusarium wilt.
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Affiliation(s)
- Xiao Huang
- Ministry of Agriculture Key Laboratory of Non-point Source Pollution Control, Institute of Environmental Science and Technology, Zhejiang University, Yuhangtang Road 866#, Hangzhou, 310058, People's Republic of China
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20
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Lundberg DS, Lebeis SL, Paredes SH, Yourstone S, Gehring J, Malfatti S, Tremblay J, Engelbrektson A, Kunin V, Del Rio TG, Edgar RC, Eickhorst T, Ley RE, Hugenholtz P, Tringe SG, Dangl JL. Defining the core Arabidopsis thaliana root microbiome. Nature 2012; 41:325-50. [PMID: 22859206 DOI: 10.1146/annurev.phyto.41.052002.095514] [Citation(s) in RCA: 111] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2011] [Accepted: 05/15/2012] [Indexed: 05/20/2023]
Abstract
Land plants associate with a root microbiota distinct from the complex microbial community present in surrounding soil. The microbiota colonizing the rhizosphere (immediately surrounding the root) and the endophytic compartment (within the root) contribute to plant growth, productivity, carbon sequestration and phytoremediation. Colonization of the root occurs despite a sophisticated plant immune system, suggesting finely tuned discrimination of mutualists and commensals from pathogens. Genetic principles governing the derivation of host-specific endophyte communities from soil communities are poorly understood. Here we report the pyrosequencing of the bacterial 16S ribosomal RNA gene of more than 600 Arabidopsis thaliana plants to test the hypotheses that the root rhizosphere and endophytic compartment microbiota of plants grown under controlled conditions in natural soils are sufficiently dependent on the host to remain consistent across different soil types and developmental stages, and sufficiently dependent on host genotype to vary between inbred Arabidopsis accessions. We describe different bacterial communities in two geochemically distinct bulk soils and in rhizosphere and endophytic compartments prepared from roots grown in these soils. The communities in each compartment are strongly influenced by soil type. Endophytic compartments from both soils feature overlapping, low-complexity communities that are markedly enriched in Actinobacteria and specific families from other phyla, notably Proteobacteria. Some bacteria vary quantitatively between plants of different developmental stage and genotype. Our rigorous definition of an endophytic compartment microbiome should facilitate controlled dissection of plant-microbe interactions derived from complex soil communities.
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Affiliation(s)
- Derek S Lundberg
- Department of Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA
- Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA
| | - Sarah L Lebeis
- Department of Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA
| | - Sur Herrera Paredes
- Department of Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA
| | - Scott Yourstone
- Department of Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA
- Curriculum in Bioinformatics and Computational Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA
| | - Jase Gehring
- Department of Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA
| | | | - Julien Tremblay
- DOE Joint Genome Institute, Walnut Creek, California 94598, USA
| | | | - Victor Kunin
- DOE Joint Genome Institute, Walnut Creek, California 94598, USA
| | | | | | - Thilo Eickhorst
- Soil Science, Faculty of Biology and Chemistry, University of Bremen, Bremen 28359, Germany
| | - Ruth E Ley
- Department of Microbiology, Cornell University, Ithaca, New York 14853, USA
| | - Philip Hugenholtz
- DOE Joint Genome Institute, Walnut Creek, California 94598, USA
- Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences & Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland 4072, Australia
| | | | - Jeffery L Dangl
- Department of Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA
- Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, North Carolina 27599, USA
- Department of Microbiology and Immunology, University of North Carolina, Chapel Hill, North Carolina 27599, USA
- Carolina Center for Genome Sciences, University of North Carolina, Chapel Hill, North Carolina 27599, USA
- Howard Hughes Medical Institute, University of North Carolina, Chapel Hill, North Carolina 27599, USA
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21
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Park JK, Kim JD, Park YI, Kim SK. Purification and characterization of a 1,3-β-d-glucanase from Streptomyces torulosus PCPOK-0324. Carbohydr Polym 2012. [DOI: 10.1016/j.carbpol.2011.09.058] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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22
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Pseudomonas and other Microbes in Disease-Suppressive Soils. SUSTAINABLE AGRICULTURE REVIEWS 2012. [DOI: 10.1007/978-94-007-4113-3_5] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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23
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Cunniffe NJ, Gilligan CA. A theoretical framework for biological control of soil-borne plant pathogens: Identifying effective strategies. J Theor Biol 2011; 278:32-43. [DOI: 10.1016/j.jtbi.2011.02.023] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2010] [Revised: 02/23/2011] [Accepted: 02/23/2011] [Indexed: 10/18/2022]
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24
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Nur Ain Izzati MZ, Azmi AR, Siti Nordahliawate MS, Norazlina J. Contribution to the knowledge of diversity of Fusarium associated with maize in Malaysia. PLANT PROTECTION SCIENCE 2011; 47:20-24. [DOI: 10.17221/52/2008-pps] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
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Kiewnick S, Neumann S, Sikora RA, Frey JE. Effect of Meloidogyne incognita inoculum density and application rate of Paecilomyces lilacinus strain 251 on biocontrol efficacy and colonization of egg masses analyzed by real-time quantitative PCR. PHYTOPATHOLOGY 2011; 101:105-112. [PMID: 20822430 DOI: 10.1094/phyto-03-10-0090] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
The fungal biocontrol agent, Paecilomyces lilacinus strain 251 (PL251), was evaluated for its potential to control the root-knot nematode Meloidogyne incognita on tomato at varying application rates and inoculum densities. Conversely to previous studies, significant dose-response relationships could not be established. However, we demonstrated that a preplanting soil treatment with the lowest dose of commercially formulated PL251 (2 × 10(5) CFU/g soil) was already sufficient to reduce root galling by 45% and number of egg masses by 69% when averaged over inoculum densities of 100 to 1,600 eggs and infective juveniles per 100 cm(3) of soil. To determine the role of colonization of M. incognita egg masses by PL251 for biocontrol efficacy, a real-time quantitative polymerase chain reaction (PCR) assay with a detection limit of 10 CFU/egg mass was used. Real-time PCR revealed a significant relationship between egg mass colonization by PL251 and the dose of product applied to soil but no correlation was found between fungal density and biocontrol efficacy or nematode inoculum level. These results demonstrate that rhizosphere competence is not the key mode of action for PL251 in controlling M. incognita on tomato.
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Affiliation(s)
- S Kiewnick
- Research Station Agroscope Changins-Waedenswil ACW, Plant Protection and Extension Fruit and Vegetables, Schloss P.O. Box, 8820 Waedenswil, Switzerland.
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Mohd Fishal EM, Meon S, Yun WM. Induction of Tolerance to Fusarium Wilt and Defense-Related Mechanisms in the Plantlets of Susceptible Berangan Banana Pre-Inoculated with Pseudomonas sp. (UPMP3) and Burkholderia sp. (UPMB3). ACTA ACUST UNITED AC 2010. [DOI: 10.1016/s1671-2927(09)60201-7] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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27
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Johnson KB. Pathogen refuge: a key to understanding biological control. ANNUAL REVIEW OF PHYTOPATHOLOGY 2010; 48:141-160. [PMID: 19400637 DOI: 10.1146/annurev.phyto.112408.132643] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Pathogen refuge is the idea that some potentially infectious pathogen propagules are not susceptible to the influence of an antagonistic microbial agent. The existence of a refuge can be attributable to one or more factors, including temporal, spatial, structural, and probabilistic, or to the pathogen's evolved ability to acquire antagonist-free space prior to ingress into a plant host. Within a specific pathosystem, refuge size can be estimated in experiments by measuring the proportion of pathogen propagules that remain infective as a function of the amount of antagonist introduced to the system. Refuge size is influenced by qualities of specific antagonists and by environment but less so by the quantity of antagonist. Consequently, most efforts to improve and optimize biological control are in essence efforts to reduce refuge size. Antagonist mixtures, optimal timing of antagonist introductions, integrated biological and chemical control, environmental optimization, and the utilization of disarmed pathogens as antagonists are strategies with potential to minimize a pathogen refuge.
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Affiliation(s)
- Kenneth B Johnson
- Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon 97331, USA.
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28
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Alabouvette C, Olivain C, Migheli Q, Steinberg C. Microbiological control of soil-borne phytopathogenic fungi with special emphasis on wilt-inducing Fusarium oxysporum. THE NEW PHYTOLOGIST 2009; 184:529-544. [PMID: 19761494 DOI: 10.1111/j.1469-8137.2009.03014.x] [Citation(s) in RCA: 107] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Plant diseases induced by soil-borne plant pathogens are among the most difficult to control. In the absence of effective chemical control methods, there is renewed interest in biological control based on application of populations of antagonistic micro-organisms. In addition to Pseudomonas spp. and Trichoderma spp., which are the two most widely studied groups of biological control agents, the protective strains of Fusarium oxysporum represent an original model. These protective strains of F. oxysporum can be used to control wilt induced by pathogenic strains of the same species. Exploring the mechanisms involved in the protective capability of these strains is not only necessary for their development as commercial biocontrol agents but raises many basic questions related to the determinism of pathogenicity versus biocontrol capacity in the F. oxysporum species complex. In this paper, current knowledge regarding the interaction between the plant and the protective strains is reviewed in comparison with interactions between the plant and pathogenic strains. The success of biological control depends not only on plant-microbial interactions but also on the ecological fitness of the biological control agents.
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Affiliation(s)
- Claude Alabouvette
- UMR 1229, INRA Université de Bourgogne, Microbiologie du Sol et de l'Environnement, 17 rue Sully, BP 86510, F 21065 Dijon Cedex, France
| | - Chantal Olivain
- UMR 1229, INRA Université de Bourgogne, Microbiologie du Sol et de l'Environnement, 17 rue Sully, BP 86510, F 21065 Dijon Cedex, France
| | - Quirico Migheli
- Dipartimento di Protezione delle Piante and Istituto Nazionale di Biostrutture e Biosistemi, Università degli Studi di Sassari,Via Enrico De Nicola 9, I - 07100 Sassari, Italy
| | - Christian Steinberg
- UMR 1229, INRA Université de Bourgogne, Microbiologie du Sol et de l'Environnement, 17 rue Sully, BP 86510, F 21065 Dijon Cedex, France
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Silvar C, Merino F, Díaz J. Resistance in pepper plants induced by Fusarium oxysporum f. sp. lycopersici involves different defence-related genes. PLANT BIOLOGY (STUTTGART, GERMANY) 2009; 11:68-74. [PMID: 19121115 DOI: 10.1111/j.1438-8677.2008.00100.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Inoculation with Fusarium oxysporum f. sp. lycopersici (FOL) protects pepper plants from subsequent infection with Phytophthora capsici. In the present paper, the level of local and systemic protection achieved by plants induced with FOL was evaluated by quantifying the pathogen biomass and using real-time PCR. Differences in the amount of pathogen were found in stems and roots between FOL-treated and untreated plants, while pathogen biomass could not be detected in leaves of induced plants. Five defence-related genes coding for a PR-1 protein, a beta-1,3-glucanase, a chitinase, a peroxidase and a sesquiterpene cyclase were up-regulated 48 h after treatment in all the tissues studied, and maximal mRNAs levels were found in leaves.
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Affiliation(s)
- C Silvar
- Dpto de Bioloxía Animal, Bioloxía Vexetal e Ecoloxía, Universidade da Coruña, Campus da Zapateira, A Coruña, Spain
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Termorshuizen A, Jeger M. Strategies of soilborne plant pathogenic fungi in relation to disease suppression. FUNGAL ECOL 2008. [DOI: 10.1016/j.funeco.2008.10.006] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Takenaka S, Sekiguchi H, Nakaho K, Tojo M, Masunaka A, Takahashi H. Colonization of Pythium oligandrum in the tomato rhizosphere for biological control of bacterial wilt disease analyzed by real-time PCR and confocal laser-scanning microscopy. PHYTOPATHOLOGY 2008; 98:187-95. [PMID: 18943195 DOI: 10.1094/phyto-98-2-0187] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
It recently has been reported that the non-plant-pathogenic oomycete Pythium oligandrum suppresses bacterial wilt caused by Ralstonia solanacearum in tomato. As one approach to determine disease-suppressive mechanisms of action, we analyzed the colonization of P. oligandrum in rhizospheres of tomato using real-time polymerase chain reaction (PCR) and confocal laser-scanning microscopy. The real-time PCR specifically quantified P. oligandrum in the tomato rhizosphere that is reliable over a range of 0.1 pg to 1 ng of P. oligandrum DNA from 25 mg dry weight of soil. Rhizosphere populations of P. oligandrum from tomato grown for 3 weeks in both unsterilized and sterilized field soils similarly increased with the initial application of at least 5 x 10(5) oospores per plant. Confocal microscopic observation also showed that hyphal development was frequent on the root surface and some hyphae penetrated into root epidermis. However, rhizosphere population dynamics after transplanting into sterilized soil showed that the P. oligandrum population decreased with time after transplanting, particularly at the root tips, indicating that this biocontrol fungus is rhizosphere competent but does not actively spread along roots. Protection over the long term from root-infecting pathogens does not seem to involve direct competition. However, sparse rhizosphere colonization of P. oligandrum reduced the bacterial wilt as well as more extensive colonization, which did not reduce the rhizosphere population of R. solanacearum. These results suggest that competition for infection sites and nutrients in rhizosphere is not the primary biocontrol mechanism of bacterial wilt by P. oligandrum.
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Affiliation(s)
- Shigehito Takenaka
- National Agricultural Research Center for Hokkaido Region, Kasaigun, Hokkaido, Japan.
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Strunnikova OK, Shakhnazarova VY, Vishnevskaya NA, Chebotar’ VK, Tikhonovich IA. Development and relations of Fusarium culmorum and Pseudomonas fluorescens in soil. Microbiology (Reading) 2007. [DOI: 10.1134/s002626170705013x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Identification and characterization of non-pathogenic Fusarium oxysporum capable of increasing and decreasing Fusarium wilt severity. ACTA ACUST UNITED AC 2006; 110:929-35. [DOI: 10.1016/j.mycres.2006.03.008] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2005] [Revised: 02/10/2006] [Accepted: 03/10/2006] [Indexed: 11/24/2022]
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Olivain C, Humbert C, Nahalkova J, Fatehi J, L'Haridon F, Alabouvette C. Colonization of tomato root by pathogenic and nonpathogenic Fusarium oxysporum strains inoculated together and separately into the soil. Appl Environ Microbiol 2006; 72:1523-31. [PMID: 16461707 PMCID: PMC1392888 DOI: 10.1128/aem.72.2.1523-1531.2006] [Citation(s) in RCA: 102] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2005] [Accepted: 11/05/2005] [Indexed: 11/20/2022] Open
Abstract
In soil, fungal colonization of plant roots has been traditionally studied by indirect methods such as microbial isolation that do not enable direct observation of infection sites or of interactions between fungal pathogens and their antagonists. Confocal laser scanning microscopy was used to visualize the colonization of tomato roots in heat-treated soil and to observe the interactions between a nonpathogenic strain, Fo47, and a pathogenic strain, Fol8, inoculated onto tomato roots in soil. When inoculated separately, both fungi colonized the entire root surface, with the exception of the apical zone. When both strains were introduced together, they both colonized the root surface and were observed at the same locations. When Fo47 was introduced at a higher concentration than Fol8, it colonized much of the root surface, but hyphae of Fol8 could still be observed at the same location on the root. There was no exclusion of the pathogenic strain by the presence of the nonpathogenic strain. These results are not consistent with the hypothesis that specific infection sites exist on the root for Fusarium oxysporum and instead support the hypothesis that competition occurs for nutrients rather than for infection sites.
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Affiliation(s)
- Chantal Olivain
- UMR Microbiologie Géochimie des Sols INRA, BP 86510, F-21065 Dijon Cedex, France
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Shishido M, Miwa C, Usami T, Amemiya Y, Johnson KB. Biological Control Efficiency of Fusarium Wilt of Tomato by Nonpathogenic Fusarium oxysporum Fo-B2 in Different Environments. PHYTOPATHOLOGY 2005; 95:1072-80. [PMID: 18943305 DOI: 10.1094/phyto-95-1072] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
ABSTRACT Efficiency of nonpathogenic Fusarium oxysporum Fo-B2 for the biological control of Fusarium wilt of tomato, caused by F. oxysporum f. sp. lycopersici CU1, was examined in different environments: a growth chamber with sterile soil-less medium, a greenhouse with fumigated or nonfumigated soil, and nonfumigated field plots. Inoculation of Fo-B2 onto tomato roots significantly reduced the severity of disease, but the efficiency of disease suppression decreased as the experimental environment became less controlled. Relationships between the recovery of Fo-B2 from hypocotyls and the disease severity indicated that the biocontrol agent was most effective when it colonized vascular tissues intensively. Moreover, the degree of Fo-B2 colonization was greatly reduced when the seedlings were grown in nonfumigated soil. Dose-response models (negative exponential, hyperbolic saturation, and logistic) were fit to observed data collected over a range of inoculum densities of the pathogen and the antagonist; the logistic model provided the best fit in all environments. The ratios of an 50% effective dose parameter for Fo-B2 to that of CU1 increased as the environment became less controlled, suggesting that environmentally related efficiency reduction impacted the antagonist more than the pathogen. The results suggest that indigenous soil microbes were a primary factor negatively influencing the efficiency of Fo-B2. Therefore, early establishment of the antagonist in a noncompetitive environment prior to outplanting could improve the efficacy of biological control.
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Silva JCD, Bettiol W. Potential of non-pathogenic Fusarium oxysporum isolates for control of Fusarium wilt of tomato. ACTA ACUST UNITED AC 2005. [DOI: 10.1590/s0100-41582005000400012] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
This study was done to evaluate the efficiency of non-pathogenic Fusarium oxysporum isolates (141/3, 233, 233/1, 245, 245/1, 251, 251/2, 251/5, and 257) in controlling vascular wilt caused by F. oxysporum f. sp. lycopersici, race 2 (isolates C-21A, TO11, and TO245) in tomato (Lycopersicon esculentum) cv. Viradoro seedlings. In order to determine the effect of non-pathogenic F. oxysporum isolates in tomato plants, the root system of 30-day-old seedlings was immersed in conidial suspensions (10(6) ml-1) of each isolate and the seedlings were transplanted to a cultivation substrate. Thirty-five days after transplanting it was observed that the non-pathogenic F. oxysporum isolates were not pathogenic to the cv. Viradoro nor did they affect seedling development. The efficiency of the non-pathogenic F. oxysporum isolates in controlling Fusarium wilt was determined by immersing the tomato seedling roots in the conidial suspension (10(6) ml-1) of each isolate and then transplanting them into substrates previously infested with isolates of F. oxysporum f.sp. lycopersici, race 2 (10(5) conidia ml-1 of substrate). Evaluations were performed 35 days after transplanting, for severity in scale with 1=healthy plant to 6=dead plant or plant showing vessel browning and wilted leaves up to the leader shoot and seedling height. The non-pathogenic F. oxysporum isolates were efficient in reducing the severity of the disease and maintaining normal plant development. These results provide evidence of the antagonistic activity of non-pathogenic F. oxysporum isolates in controlling vascular wilt caused by F. oxysporum f. sp. lycopersici race 2 in tomato.
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Ros M, Hernandez MT, Garcia C, Bernal A, Pascual JA. Biopesticide effect of green compost against fusarium wilt on melon plants. J Appl Microbiol 2005; 98:845-54. [PMID: 15752330 DOI: 10.1111/j.1365-2672.2004.02508.x] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
AIMS The biopesticide effect of four green composts against fusarium wilt in melon plants and the effect of soil quality in soils amended with composts were assayed. METHODS AND RESULTS The composts consisted of pruning wastes, with or without addition of coffee wastes (3/1 and 4/1, dry wt/dry wt) or urea (1000/1, dry wt/dry wt). In vitro experiments suggested the biopesticide effect of the composts against Fusarium oxysporum, while only the compost of pine bark and urea (1000/1dry wt/dry wt) had an abiotic effect. Melon plant growth with composts and F. oxysporum was one to four times greater than in the non-amended soil, although there was no significant decrease in the level of the F. oxysporum in the soil. The addition of composts to the soil also improved its biological quality, as assessed by microbiological and biochemical parameters: ATP and hydrolases involved in the P (phosphatase), C (beta-glucosidase) and N (urease) cycles. CONCLUSIONS Green composts had greater beneficial characteristics, improved plant growth and controlled fusarium wilt in melon plants. These composts improve the soil quality of semi-arid agricultural soils. SIGNIFICANCE AND IMPACT OF THE STUDY Biotic and abiotic factors from composts have been tested as responsible of their biopesticide activity against fusarium wilt.
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Affiliation(s)
- M Ros
- Department of Soil Water Conservation and Organic Waste Management, Centro de Edafologia y Biologia Aplicada del segura (CEBAS-CSIC), 30100 Espinardo, Murcia, Spain
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Bowers JH, Locke JC. Effect of Formulated Plant Extracts and Oils on Population Density of Phytophthora nicotianae in Soil and Control of Phytophthora Blight in the Greenhouse. PLANT DISEASE 2004; 88:11-16. [PMID: 30812449 DOI: 10.1094/pdis.2004.88.1.11] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Formulated plant extracts and oils were investigated for control of diseases caused by Phytophthora spp. Soil infested with chlamydospores of Phytophthora nicotianae was treated by incorporating 1, 5, and 10% aqueous emulsions of formulations containing clove oil, neem oil, pepper extract and mustard oil, cassia extract, synthetic cinnamon oil, or the fungicide metalaxyl. Population densities of P. nicotianae were determined at 0 (before treatment), 1, 3, 7, 14, and 21 days after treatment. Treatment of the soil with 5 and 10% aqueous emulsions resulted in significant (P < 0.05) differences among treatment mean values at each assay date. After 1 day, population densities were reduced to below the limit of detection (<0.04 CFU/cm3) in soil treated with 10% aqueous emulsions of two pepper extract-mustard oil formulations and two cassia extract formulations, and near the limit of detection for a synthetic cinnamon oil formulation. Over time, populations of P. nicotianae were detected in the assay; however, after 21 days, populations of P. nicotianae in soil treated with one of the pepper extract-mustard oil formulations still were not detected. Formulations of clove oil, another pepper extract-mustard oil combination, the two cassia extracts, and the synthetic cinnamon oil reduced populations 98.4 to 99.9% after 21 days compared with the nontreated control soil. The neem oil formulation and metalaxyl did not reduce pathogen populations at any rate tested. In the greenhouse after 35 days, 10% aqueous emulsions of a pepper extract-mustard oil formulation, a cassia extract, and the synthetic cinnamon oil formulation suppressed disease development in periwinkle 93.0 to 96.7% compared with the nontreated infested soil. The observed reduction in the pathogen population and significantly more healthy plants in the greenhouse indicates that these formulations of plant extracts and oils could have important roles in biologically based management strategies for control of diseases caused by P. nicotianae.
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Affiliation(s)
- John H Bowers
- United States Department of Agriculture-Agricultural Research Service (USDA-ARS), U. S. National Arboretum, Floral & Nursery Plants Research Unit, Beltsville, MD 20705
| | - James C Locke
- United States Department of Agriculture-Agricultural Research Service (USDA-ARS), U. S. National Arboretum, Floral & Nursery Plants Research Unit, Beltsville, MD 20705
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Takehara T, Kuniyasu K, Mori M, Hagiwara H. Use of a Nitrate-Nonutilizing Mutant and Selective Media to Examine Population Dynamics of Fusarium oxysporum f. sp. spinaciae in Soil. PHYTOPATHOLOGY 2003; 93:1173-1181. [PMID: 18944103 DOI: 10.1094/phyto.2003.93.9.1173] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
ABSTRACT Determining the population density of the spinach wilt pathogen Fusarium oxysporum f. sp. spinaciae in soil with conventional Fusarium-selective media is quite difficult because nonpathogenic strains of F. oxysporum also grow on those media and are indistinguishable from the pathogen. Therefore, a nitrate-nonutilizing (nit) mutant of the pathogen and corresponding selective media were tested in an experimental approach to determine the population density of the pathogen. Colony forming units of the pathogen were countable after soil-dilution plating onto nit mutant-selective media MMCPA, CMP, and CGMBP. Colony forming units of wild-type Fusarium spp. were countable using a wildtype Fusarium-selective medium, GMBP. By combining nit mutant- and wild-type-selective media, the population densities of pathogenic and nonpathogenic F. oxysporum in the same soil could be measured selectively. This method was useful in studying population dynamics of the pathogen after different soil treatments. Soil disinfested with hot water or chloropicrin was amended with the nit mutant pathogen, and subsequent changes in population densities of the pathogen were compared with those in nontreated field soil. The pathogen rapidly proliferated in disinfested soil and wilt developed faster than in nontreated soil. When a nonpathogenic isolate of F. oxysporum was added at high density to sterilized soil prior to the pathogen, growth of the pathogen was greatly suppressed. Nonpathogenic F. oxysporum could not, however, reduce the density of preexisting pathogen.
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Bonaterra A, Mari M, Casalini L, Montesinos E. Biological control of Monilinia laxa and Rhizopus stolonifer in postharvest of stone fruit by Pantoea agglomerans EPS125 and putative mechanisms of antagonism. Int J Food Microbiol 2003; 84:93-104. [PMID: 12781959 DOI: 10.1016/s0168-1605(02)00403-8] [Citation(s) in RCA: 81] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
Treatment of stone fruits (apricot, peach and nectarine) with Pantoea agglomerans strain EPS125 decreased the incidence and diameter of lesions of brown rot caused by Monilinia laxa and soft rot caused by Rhizopus stolonifer. Root control was achieved on fruits either wounded and subsequently inoculated with the pathogens or non-wounded and naturally infected from orchards. The efficacy of biocontrol was dependent on the concentration of the biocontrol agent and pathogen. At medium to low pathogen dose, optimal EPS125 concentrations were above 10(7) CFU ml(-1). The median effective dose (ED(50)) of EPS125 was 4.5x10(4) in M. laxa and 2.2x10(5) CFU ml(-1) in R. stolonifer. However, EPS125 was more effective in M. laxa than in R. stolonifer as indicated by the ratio between ED(50) of the biocontrol agent and pathogen (K(z)/K(x)) which was 166 and 1263, respectively. Interactions between the strain EPS125 and the fruit surface, and M. laxa and R. stolonifer, were studied to determine the mechanisms of protection from postharvest rots. The strain EPS125 colonizes, grows and survives on stone fruit wounds. Significant inhibition of conidial germination and hyphal growth of R. stolonifer and M. laxa was achieved when the fungal and EPS125 cells were cocultivated on peel leachate or nectarine juice. However, no effect was observed when the antagonist and the pathogen cells were physically separated by a membrane filter which permits nutrient and metabolite interchange. Therefore, a direct interaction between the strain and the pathogen cells is necessary for antagonism, without a significant contribution of the production of antibiotic substances or nutrient competition. Preemptive exclusion by wound colonization and direct interaction with the pathogen is proposed as the mechanism of biocontrol.
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Affiliation(s)
- Anna Bonaterra
- Institute of Food and Agricultural Technology and CeRTA-CIDSAV, University of Girona, Av. Lluís Santaló, 17071 Girona, Spain
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Recorbet G, Steinberg C, Olivain C, Edel V, Trouvelot S, Dumas-Gaudot E, Gianinazzi S, Alabouvette C. Wanted: pathogenesis-related marker molecules for Fusarium oxysporum. THE NEW PHYTOLOGIST 2003; 159:73-92. [PMID: 33873682 DOI: 10.1046/j.1469-8137.2003.00795.x] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
Although Fusarium oxysporum pathogens cause severe wilts in about 80 botanical species, the mechanisms of pathogenicity and symptom induction are poorly understood. Knowledge about the genetic and biochemical pathways involved in the pathogenesis of F. oxysporum would be invaluable in getting targets for both fungicide development and search for biocontrol agents. In this respect, we described the main approaches that have been developed to identify some mechanisms underlying the pathogenesis of F. oxysporum. During the last decades, the potential functions triggering of F. oysporum pathogenicity have mainly been investigated by comparing soilborne pathogenic strains with nonpathogenic ones with regards to the analysis of the pre- and infection stages and of the resulting plant-fungus interactions. The relatively recent progress in the molecular biology of this fungus has allowed complementary approaches to be developed in order to identify key factors involved in F. oxysporum pathogenicity. Screening mutants of F. oxysporum for loss of virulence led to the successful identification of some pathogenesis-related factors, such as hydrophobicity or attachment of germlings. Taken together, the strategies described above support the idea that changes in fungal metabolism is also of importance in triggering of F. oxysporum pathogenesis.
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Affiliation(s)
- Ghislaine Recorbet
- Unité Mixte de Recherche 1088, INRA/Université de Bourgogne: Biochimie, Biologie Cellulaire et Ecologie des Interactions Plantes/Micro-Organismes, INRA-CMSE, BP 86510, 21065 Dijon Cedex, France
| | - Christian Steinberg
- Unité Mixte de Recherche 1088, INRA/Université de Bourgogne: Biochimie, Biologie Cellulaire et Ecologie des Interactions Plantes/Micro-Organismes, INRA-CMSE, BP 86510, 21065 Dijon Cedex, France
| | - Chantal Olivain
- Unité Mixte de Recherche 1088, INRA/Université de Bourgogne: Biochimie, Biologie Cellulaire et Ecologie des Interactions Plantes/Micro-Organismes, INRA-CMSE, BP 86510, 21065 Dijon Cedex, France
| | - Véronique Edel
- Unité Mixte de Recherche 1088, INRA/Université de Bourgogne: Biochimie, Biologie Cellulaire et Ecologie des Interactions Plantes/Micro-Organismes, INRA-CMSE, BP 86510, 21065 Dijon Cedex, France
| | - Sophie Trouvelot
- Unité Mixte de Recherche 1088, INRA/Université de Bourgogne: Biochimie, Biologie Cellulaire et Ecologie des Interactions Plantes/Micro-Organismes, INRA-CMSE, BP 86510, 21065 Dijon Cedex, France
| | - Eliane Dumas-Gaudot
- Unité Mixte de Recherche 1088, INRA/Université de Bourgogne: Biochimie, Biologie Cellulaire et Ecologie des Interactions Plantes/Micro-Organismes, INRA-CMSE, BP 86510, 21065 Dijon Cedex, France
| | - Silvio Gianinazzi
- Unité Mixte de Recherche 1088, INRA/Université de Bourgogne: Biochimie, Biologie Cellulaire et Ecologie des Interactions Plantes/Micro-Organismes, INRA-CMSE, BP 86510, 21065 Dijon Cedex, France
| | - Claude Alabouvette
- Unité Mixte de Recherche 1088, INRA/Université de Bourgogne: Biochimie, Biologie Cellulaire et Ecologie des Interactions Plantes/Micro-Organismes, INRA-CMSE, BP 86510, 21065 Dijon Cedex, France
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Lievens B, Brouwer M, Vanachter ACRC, Lévesque CA, Cammue BPA, Thomma BPHJ. Design and development of a DNA array for rapid detection and identification of multiple tomato vascular wilt pathogens. FEMS Microbiol Lett 2003; 223:113-22. [PMID: 12799009 DOI: 10.1016/s0378-1097(03)00352-5] [Citation(s) in RCA: 109] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
Abstract
Fusarium wilt, caused by Fusarium oxysporum f. sp. lycopersici, and Verticillium wilt, caused by either Verticillium albo-atrum or Verticillium dahliae, are devastating diseases of tomato (Lycopersicon esculentum) found worldwide. Monitoring is the cornerstone of integrated pest management of any disease. The lack of rapid, accurate, and reliable means by which plant pathogens can be detected and identified is one of the main limitations in integrated disease management. In this paper, we describe the development of a molecular detection system, based on DNA array technology, for rapid and efficient detection of these vascular wilt pathogens. We show the utility of this array for the sensitive detection of these pathogens from complex substrates like soil, plant tissues and irrigation water, and samples that are collected by tomato growers in their greenhouses.
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Affiliation(s)
- Bart Lievens
- Centre of Microbial and Plant Genetics (CMPG), Katholieke Universiteit Leuven, Kasteelpark Arenberg 20, 3001, Heverlee-Leuven, Belgium
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Roberts DP, Lohrke SM. United States Department of Agriculture-Agricultural Research Service research programs in biological control of plant diseases. PEST MANAGEMENT SCIENCE 2003; 59:654-664. [PMID: 12846315 DOI: 10.1002/ps.613] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
A number of USDA-ARS programs directed at overcoming impediments to the use of biocontrol agents on a commercial scale are described. These include improvements in screening techniques, taxonomic studies to identify beneficial strains more precisely, and studies on various aspects of the large-scale production of biocontrol agents. Another broad area of studies covers the ecological aspects of biocontrol agents-their interaction with the pathogen, with the plant and with other aspects of the environmental complex. Examples of these studies are given and their relevance to the further development and expansion of biocontrol agents is discussed.
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Affiliation(s)
- Daniel P Roberts
- Sustainable Agricultural Systems Laboratory, USDA-ARS, Beltsville, MD 20705-2350, USA.
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Schneider SM, Rosskopf EN, Leesch JG, Chellemi DO, Bull CT, Mazzola M. United States Department of Agriculture-Agricultural Research Service research on alternatives to methyl bromide: pre-plant and post-harvest. PEST MANAGEMENT SCIENCE 2003; 59:814-826. [PMID: 12846332 DOI: 10.1002/ps.728] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Methyl bromide is a widely used fumigant for both pre-plant and post-harvest pest and pathogen control. The Montreal Protocol and the US Clean Air Act mandate a phase-out of the import and manufacture of methyl bromide, beginning in 2001 and culminating with a complete ban, except for quarantine and certain pre-shipment uses and exempted critical uses, in January 2005. In 1995, ARS built on its existing programs in soil-borne plant pathology and post-harvest entomology and plant pathology to initiate a national research program to develop alternatives to methyl bromide. The focus has been on strawberry, pepper, tomato, perennial and nursery cropping systems for pre-plant methyl bromide use and fresh and durable commodities for post-harvest use. Recently the program has been expanded to include research on alternatives for the ornamental and cut flower cropping systems. An overview of the national research program is presented. Results from four specific research trials are presented, ranging from organic to conventional systems. Good progress on short-term alternatives is being made. These will be used as the foundation of integrated management systems which begin with pre-plant management decisions and continue through post-harvest processing.
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Affiliation(s)
- Sally M Schneider
- USDA-ARS, San Joaquin Valley Agricultural Sciences Center, Parlier, CA 93648, USA.
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Chan YK, McCormick WA, Seifert KA. Characterization of an antifungal soil bacterium and its antagonistic activities against Fusarium species. Can J Microbiol 2003; 49:253-62. [PMID: 12897834 DOI: 10.1139/w03-033] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Bacteria were isolated from a cultivated soil and screened for antagonistic activity against Fusarium graminearum, a predominant agent of ear rot and head blight in cereal crops. Based on its in vitro effectiveness, isolate D1/2 was selected for characterization and identified as a strain of Bacillus subtilis by phenotypic tests and comparative analysis of its 16S ribosomal RNA gene (rDNA) sequence. It inhibited the mycelial growth of a collection of common fungal phytopathogens, including eight Fusarium species, three other ascomycetes, and one basidiomycete. The cell-free culture filtrate of D1/2 at different dilutions was active against macroconidium germination and hyphal growth of F. graminearum, depending on the initial macroconidium density. It induced the formation of swollen hyphal cells in liquid cultures of this fungus grown from macroconidia. A bioassay also demonstrated that D1/2 offered in planta protection against the damping-off disease in alfalfa seedlings caused by F. graminearum, while the type strain of B. subtilis was ineffective. Hence, B. subtilis D1/2 or its culture filtrate has potential application in controlling plant diseases caused by Fusarium.
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Affiliation(s)
- Yiu-Kwok Chan
- Eastern Cereal and Oilseed Research Center, Agriculture and Agri-Food Canada, Ottawa.
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Abstract
Fusarium oxysporum is well represented among the rhizosphere microflora. While all strains exist saprophytically, some are well-known for inducing wilt or root rots on plants whereas others are considered as nonpathogenic. Several methods based on phenotypic and genetic traits have been developed to characterize F. oxysporum strains. Results showed the great diversity affecting the soil-borne populations of F. oxysporum. In suppressive soils, interactions between pathogenic and nonpathogenic strains result in the control of the disease. Therefore nonpathogenic strains are developed as biocontrol agents. The nonpathogenic F. oxysporum strains show several modes of action contributing to their biocontrol capacity. They are able to compete for nutrients in the soil, affecting the rate of chlamydospore germination of the pathogen. They can also compete for infection sites on the root, and can trigger plant defence reactions, inducing systemic resistance. These mechanisms are more or less important depending on the strain. The nonpathogenic F. oxysporum are easy to mass produce and formulate, but application conditions for biocontrol efficacy under field conditions have still to be determined.
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Affiliation(s)
- D Fravel
- USDA, ARS, Vegetable Laboratory, Building 010 A, BARC-West, Beltsville, MD 20705, USA
| | - C Olivain
- INRA-CMSE, UMR BBCE-IPM, BP 85610, F-21065 Dijon Cedex, France
| | - C Alabouvette
- INRA-CMSE, UMR BBCE-IPM, BP 85610, F-21065 Dijon Cedex, France
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Chellemi DO. Nonchemical management of soilborne pests in fresh market vegetable production systems. PHYTOPATHOLOGY 2002; 92:1367-1372. [PMID: 18943895 DOI: 10.1094/phyto.2002.92.12.1367] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
ABSTRACT Nonchemical methods including host resistance, organic amendments, crop rotation, soil solarization, and cultural practices have been used to control soilborne pests in fresh market vegetable production systems. Their suitability as alternatives to methyl bromide will depend on the approach to pest management used by the grower. Traditionally, methyl bromide is used in production systems that rely on the single application of a broad-spectrum biocide to disinfest soils prior to planting. Non-chemical methods are not suitable for a single tactic approach to pest management because they do not provide the same broad spectrum of activity or consistency as fumigation with methyl bromide. Nonchemical methods are compatible with an integrated pest management (IPM) approach, where multiple tactics are used to maintain damage from pests below an economic threshold while minimizing the impact to beneficial organisms. However, adoption of IPM is hindered by the paucity of economically feasible sampling programs and thresholds for soilborne pests and by a reluctance of growers to commit additional resources to the collection and management of biological information. A novel approach to the management of soilborne pests is to design the crop production system to avoid pest outbreaks. Using this "proactive" approach, a tomato production system was developed using strip-tillage into existing bahia-grass pasture. By minimizing inputs and disruption to the pasture, growers were able to reap the rotational benefits of bahiagrass without cultivating the rotational crop. While minimizing the need for interventive procedures, a proactive approach is difficult to integrate into existing crop production systems and will require several years of testing and validation.
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Larkin RP, Fravel DR. Effects of Varying Environmental Conditions on Biological Control of Fusarium Wilt of Tomato by Nonpathogenic Fusarium spp. PHYTOPATHOLOGY 2002; 92:1160-1166. [PMID: 18944240 DOI: 10.1094/phyto.2002.92.11.1160] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
ABSTRACT The influence of varying environmental and cropping conditions including temperature, light, soil type, pathogen isolate and race, and cultivar of tomato on biological control of Fusarium wilt of tomato by isolates of nonpathogenic Fusarium oxysporum (CS-20 and CS-24) and F. solani (CS-1) was evaluated in greenhouse and growth chamber experiments. Liquid spore suspensions (10(6)/ml) of the biocontrol isolates were applied to soilless potting mix at the time of tomato seeding, and the seedlings were transplanted into pathogen-infested field soil 2 weeks later. Temperature regimes ranging from 22 to 32 degrees C significantly affected disease development and plant physiological parameters. Biocontrol isolate CS-20 significantly reduced disease at all temperature regimes tested, yielding reductions of disease incidence of 59 to 100% relative to pathogen control treatments. Isolates CS-24 and CS-1 reduced disease incidence in the greenhouse and at high temperatures, but were less effective at the optimum temperature for disease development (27 degrees C). Growing plants under shade (50% of full light) versus full light affected some plant growth parameters, but did not affect the efficacy of biocontrol of any of the three bio-control isolates. Isolate CS-20 effectively reduced disease incidence (56 to 79% reduction) in four different field soils varying in texture (sandy to clayey) and organic matter content (0 to 3.2%). Isolate CS-1 reduced disease in the sandy and loamy soils (49 to 66% reduction), but was not effective in a heavy clay soil. Both CS-1 and CS-20 were equally effective against all three races of the pathogen, as well as multiple isolates of each race (48 to 66% reduction in disease incidence). Both isolates, CS-1 and CS-20, were equally effective in reducing disease incidence (66 to 80% reduction) by pathogenic races 1, 2, and 3 on eight different tomato cultivars containing varying levels of inherent resistance to Fusarium wilt (susceptible, resistant to race 1, or resistant to races 1 and 2). These results demonstrate that both these Fusarium isolates, and particularly CS-20, can effectively reduce Fusarium wilt disease of tomato under a variety of environmental conditions and have potential for further development.
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Bao JR, Fravel DR, O'Neill NR, Lazarovits G, Berkum PV. Genetic analysis of pathogenic and nonpathogenic Fusarium oxysporum from tomato plants. ACTA ACUST UNITED AC 2002. [DOI: 10.1139/b02-004] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Forty-three Fusarium oxysporum strains and one Fusarium solani strain were analyzed for genetic diversity. These strains represent a wide range of geographic locations and were collected primarily from tomato (Lycopersicon esculentum) roots. Among all 43 F. oxysporum strains, 21 were not pathogenic to tomato, 20 were pathogenic, including 13 strains of Fusarium oxysporum lycopersici and seven strains of Fusarium oxysporum radicis-lycopersici, and two were other formae speciales of the fungus. Genetic diversity of all 43 strains was assessed by vegetative compatibility group (VCG), sequence analysis of the rDNA internal transcribed spacers (ITS1 and ITS2) and the 5.8S rRNA gene, and amplified fragment length polymorphism (AFLP). Most of the F. o. lycopersici strains were assigned to VCG 0030, while most nonpathogenic ones were incompatible with each other. ITS region analysis grouped the strains into four clusters. The nonpathogenic F. oxysporum strains were in two groups, while the pathogenic strains were placed in two different groups. Pathogenic and nonpathogenic strains were also separated into different clusters based on AFLP data, although some nonpathogenic strains grouped with pathogenic strains. The population of pathogenic strains was less diverse than that of the nonpathogenic strains, suggesting that the pathogenic strains were possibly of monophyletic origin. For both pathogenic and nonpathogenic F. oxysporum strains, no relationship was observed between the genetic profiles and geographic origin; this may indicate that pathogens did not originate independently at each locality.Key words: Fusarium oxysporum, VCG, rDNA (ITS) sequence, AFLP.
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