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Li XY, Li ZF, Zhang XL, Yang MQ, Wu PQ, Huang MJ, Huang HQ. Adaptation mechanism of three Impatiens species to different habitats based on stem morphology, lignin and MYB4 gene. BMC PLANT BIOLOGY 2024; 24:453. [PMID: 38789944 PMCID: PMC11127381 DOI: 10.1186/s12870-024-05115-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Accepted: 05/07/2024] [Indexed: 05/26/2024]
Abstract
BACKGROUND Impatiens is an important genus with rich species of garden plants, and its distribution is extremely extensive, which is reflected in its diverse ecological environment. However, the specific mechanisms of Impatiens' adaptation to various environments and the mechanism related to lignin remain unclear. RESULTS Three representative Impatiens species,Impatiens chlorosepala (wet, low degree of lignification), Impatiens uliginosa (aquatic, moderate degree of lignification) and Impatiens rubrostriata (terrestrial, high degree of lignification), were selected and analyzed for their anatomical structures, lignin content and composition, and lignin-related gene expression. There are significant differences in anatomical parameters among the stems of three Impatiens species, and the anatomical structure is consistent with the determination results of lignin content. Furthermore, the thickness of the xylem and cell walls, as well as the ratio of cell wall thickness to stem diameter have a strong correlation with lignin content. The anatomical structure and degree of lignification in Impatiens can be attributed to the plant's growth environment, morphology, and growth rate. Our analysis of lignin-related genes revealed a negative correlation between the MYB4 gene and lignin content. The MYB4 gene may control the lignin synthesis in Impatiens by controlling the structural genes involved in the lignin synthesis pathway, such as HCT, C3H, and COMT. Nonetheless, the regulation pathway differs between species of Impatiens. CONCLUSIONS This study demonstrated consistency between the stem anatomy of Impatiens and the results obtained from lignin content and composition analyses. It is speculated that MYB4 negatively regulates the lignin synthesis in the stems of three Impatiens species by regulating the expression of structural genes, and its regulation mechanism appears to vary across different Impatiens species. This study analyses the variations among different Impatiens plants in diverse habitats, and can guide further molecular investigations of lignin biosynthesis in Impatiens.
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Affiliation(s)
- Xin-Yi Li
- Southwest Forestry University, College of Landscape Architecture and Horticulture Sciences, Southwest Research Center for Engineering Technology of Landscape Architecture (State Forestry and Grassland Administration), Yunnan Engineering Research Center for Functional Flower Resources and Industrialization, Research and Development Center of Landscape Plants and Horticulture Flowers, Kunming, Yunnan, 650224, China
| | - Ze-Feng Li
- Southwest Forestry University, College of Landscape Architecture and Horticulture Sciences, Southwest Research Center for Engineering Technology of Landscape Architecture (State Forestry and Grassland Administration), Yunnan Engineering Research Center for Functional Flower Resources and Industrialization, Research and Development Center of Landscape Plants and Horticulture Flowers, Kunming, Yunnan, 650224, China
| | - Xiao-Li Zhang
- Southwest Forestry University, College of Landscape Architecture and Horticulture Sciences, Southwest Research Center for Engineering Technology of Landscape Architecture (State Forestry and Grassland Administration), Yunnan Engineering Research Center for Functional Flower Resources and Industrialization, Research and Development Center of Landscape Plants and Horticulture Flowers, Kunming, Yunnan, 650224, China
| | - Meng-Qing Yang
- Southwest Forestry University, College of Landscape Architecture and Horticulture Sciences, Southwest Research Center for Engineering Technology of Landscape Architecture (State Forestry and Grassland Administration), Yunnan Engineering Research Center for Functional Flower Resources and Industrialization, Research and Development Center of Landscape Plants and Horticulture Flowers, Kunming, Yunnan, 650224, China
| | - Pei-Qing Wu
- Southwest Forestry University, College of Landscape Architecture and Horticulture Sciences, Southwest Research Center for Engineering Technology of Landscape Architecture (State Forestry and Grassland Administration), Yunnan Engineering Research Center for Functional Flower Resources and Industrialization, Research and Development Center of Landscape Plants and Horticulture Flowers, Kunming, Yunnan, 650224, China
| | - Mei-Juan Huang
- Southwest Forestry University, College of Landscape Architecture and Horticulture Sciences, Southwest Research Center for Engineering Technology of Landscape Architecture (State Forestry and Grassland Administration), Yunnan Engineering Research Center for Functional Flower Resources and Industrialization, Research and Development Center of Landscape Plants and Horticulture Flowers, Kunming, Yunnan, 650224, China.
| | - Hai-Quan Huang
- Southwest Forestry University, College of Landscape Architecture and Horticulture Sciences, Southwest Research Center for Engineering Technology of Landscape Architecture (State Forestry and Grassland Administration), Yunnan Engineering Research Center for Functional Flower Resources and Industrialization, Research and Development Center of Landscape Plants and Horticulture Flowers, Kunming, Yunnan, 650224, China.
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Liu Y, Li Y, Wang A, Xu Z, Li C, Wang Z, Guo B, Chen Y, Tang F, Li J. Enhancing cold resistance in Banana (Musa spp.) through EMS-induced mutagenesis, L-Hyp pressure selection: phenotypic alterations, biomass composition, and transcriptomic insights. BMC PLANT BIOLOGY 2024; 24:101. [PMID: 38331759 PMCID: PMC10854111 DOI: 10.1186/s12870-024-04775-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Accepted: 01/29/2024] [Indexed: 02/10/2024]
Abstract
BACKGROUND The cultivation of bananas encounters substantial obstacles, particularly due to the detrimental effects of cold stress on their growth and productivity. A potential remedy that has gained attention is the utilization of ethyl mesylate (EMS)-induced mutagenesis technology, which enables the creation of a genetically varied group of banana mutants. This complex procedure entails subjecting the mutants to further stress screening utilizing L-Hyp in order to identify those exhibiting improved resistance to cold. This study conducted a comprehensive optimization of the screening conditions for EMS mutagenesis and L-Hyp, resulting in the identification of the mutant cm784, which exhibited remarkable cold resistance. Subsequent investigations further elucidated the physiological and transcriptomic responses of cm784 to low-temperature stress. RESULTS EMS mutagenesis had a substantial effect on banana seedlings, resulting in modifications in shoot and root traits, wherein a majority of seedlings exhibited delayed differentiation and limited elongation. Notably, mutant leaves displayed altered biomass composition, with starch content exhibiting the most pronounced variation. The application of L-Hyp pressure selection aided in the identification of cold-resistant mutants among seedling-lethal phenotypes. The mutant cm784 demonstrated enhanced cold resistance, as evidenced by improved survival rates and reduced symptoms of chilling injury. Physiological analyses demonstrated heightened activities of antioxidant enzymes and increased proline production in cm784 when subjected to cold stress. Transcriptome analysis unveiled 946 genes that were differentially expressed in cm784, with a notable enrichment in categories related to 'Carbohydrate transport and metabolism' and 'Secondary metabolites biosynthesis, transport, and catabolism'. CONCLUSION The present findings provide insights into the molecular mechanisms that contribute to the heightened cold resistance observed in banana mutants. These mechanisms encompass enhanced carbohydrate metabolism and secondary metabolite biosynthesis, thereby emphasizing the adaptive strategies employed to mitigate the detrimental effects induced by cold stress.
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Affiliation(s)
- Yumeng Liu
- National Key Laboratory for Tropical Crop Breeding, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya/Haikou, Hainan, 572024/571101, China
- College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Yujia Li
- National Key Laboratory for Tropical Crop Breeding, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya/Haikou, Hainan, 572024/571101, China
- Hainan Banana Healthy Seedling Propagation Engineering Research Center, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, Hainan, China
| | - Anbang Wang
- National Key Laboratory for Tropical Crop Breeding, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya/Haikou, Hainan, 572024/571101, China
- Hainan Banana Healthy Seedling Propagation Engineering Research Center, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, Hainan, China
| | - Zhuye Xu
- Hainan Banana Healthy Seedling Propagation Engineering Research Center, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, Hainan, China
- College of Horticulture, Hainan University, Haikou, 571101, Hainan, China
| | - Chunfang Li
- Collage of Tropical Crop, Yunnan Agricultural University, Puer, 611101, Yunnan, China
| | - Zuo Wang
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, Hainan, China
| | - Borui Guo
- National Key Laboratory for Tropical Crop Breeding, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya/Haikou, Hainan, 572024/571101, China
- College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Yan Chen
- Collage of Tropical Crop, Yunnan Agricultural University, Puer, 611101, Yunnan, China
| | - Fenling Tang
- National Key Laboratory for Tropical Crop Breeding, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya/Haikou, Hainan, 572024/571101, China
- Hainan Banana Healthy Seedling Propagation Engineering Research Center, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, Hainan, China
| | - Jingyang Li
- National Key Laboratory for Tropical Crop Breeding, Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya/Haikou, Hainan, 572024/571101, China.
- Hainan Banana Healthy Seedling Propagation Engineering Research Center, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, Hainan, China.
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Zhou R, Wang S, Zhan N, He W, Deng G, Dou T, Zhu XT, Xie WZ, Zheng YY, Hu C, Bi F, Gao H, Dong T, Liu S, Li C, Yang Q, Wang L, Song JM, Dang J, Guo Q, Yi G, Chen LL, Sheng O. High-quality genome assemblies for two Australimusa bananas (Musa spp.) and insights into regulatory mechanisms of superior fiber properties. PLANT COMMUNICATIONS 2024; 5:100681. [PMID: 37660253 PMCID: PMC10811375 DOI: 10.1016/j.xplc.2023.100681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Revised: 08/19/2023] [Accepted: 08/30/2023] [Indexed: 09/04/2023]
Abstract
Bananas (Musa spp.) are monocotyledonous plants with high genetic diversity in the Musaceae family that are cultivated mainly in tropical and subtropical countries. The fruits are a popular food, and the plants themselves have diverse uses. Four genetic groups (genomes) are thought to have contributed to current banana cultivars: Musa acuminata (A genome), Musa balbisiana (B genome), Musa schizocarpa (S genome), and species of the Australimusa section (T genome). However, the T genome has not been effectively explored. Here, we present the high-quality TT genomes of two representative accessions, Abaca (Musa textilis), with high-quality natural fiber, and Utafun (Musa troglodytarum, Fe'i group), with abundant β-carotene. Both the Abaca and Utafun assemblies comprise 10 pseudochromosomes, and their total genome sizes are 613 Mb and 619 Mb, respectively. Comparative genome analysis revealed that the larger size of the T genome is likely attributable to rapid expansion and slow removal of transposons. Compared with those of Musa AA or BB accessions or sisal (Agava sisalana), Abaca fibers exhibit superior mechanical properties, mainly because of their thicker cell walls with a higher content of cellulose, lignin, and hemicellulose. Expression of MusaCesA cellulose synthesis genes peaks earlier in Abaca than in AA or BB accessions during plant development, potentially leading to earlier cellulose accumulation during secondary cell wall formation. The Abaca-specific expressed gene MusaMYB26, which is directly regulated by MusaMYB61, may be an important regulator that promotes precocious expression of secondary cell wall MusaCesAs. Furthermore, MusaWRKY2 and MusaNAC68, which appear to be involved in regulating expression of MusaLAC and MusaCAD, may at least partially explain the high accumulation of lignin in Abaca. This work contributes to a better understanding of banana domestication and the diverse genetic resources in the Musaceae family, thus providing resources for Musa genetic improvement.
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Affiliation(s)
- Run Zhou
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China; College of Informatics, Huazhong Agricultural University, Wuhan 430070, China
| | - Shuo Wang
- College of Informatics, Huazhong Agricultural University, Wuhan 430070, China
| | - Ni Zhan
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China
| | - Weidi He
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China
| | - Guiming Deng
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China
| | - Tongxin Dou
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China
| | - Xi-Tong Zhu
- College of Informatics, Huazhong Agricultural University, Wuhan 430070, China
| | - Wen-Zhao Xie
- College of Informatics, Huazhong Agricultural University, Wuhan 430070, China
| | - Yu-Yu Zheng
- College of Informatics, Huazhong Agricultural University, Wuhan 430070, China
| | - Chunhua Hu
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China
| | - Fangcheng Bi
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China
| | - Huijun Gao
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China
| | - Tao Dong
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China
| | - Siwen Liu
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China
| | - Chunyu Li
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China
| | - Qiaosong Yang
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China
| | - Lingqiang Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Guangxi University, Nanning 530004, China
| | - Jia-Ming Song
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Guangxi University, Nanning 530004, China
| | - Jiangbo Dang
- College of Horticulture and Landscape Architecture, Southwest University, Chongqing 400715, China
| | - Qigao Guo
- College of Horticulture and Landscape Architecture, Southwest University, Chongqing 400715, China
| | - Ganjun Yi
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China.
| | - Ling-Ling Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Life Science and Technology, Guangxi University, Nanning 530004, China.
| | - Ou Sheng
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture and Rural Affairs, Guangdong Provincial Key Laboratory of Tropical and Subtropical Fruit Tree Research, Guangzhou 510640, China.
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Bai Y, Tian D, Chen P, Wu D, Du K, Zheng B, Shi X. A Pectate Lyase Gene Plays a Critical Role in Xylem Vascular Development in Arabidopsis. Int J Mol Sci 2023; 24:10883. [PMID: 37446058 DOI: 10.3390/ijms241310883] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 06/23/2023] [Accepted: 06/25/2023] [Indexed: 07/15/2023] Open
Abstract
As a major component of the plant primary cell wall, structure changes in pectin may affect the formation of the secondary cell wall and lead to serious consequences on plant growth and development. Pectin-modifying enzymes including pectate lyase-like proteins (PLLs) participate in the remodeling of pectin during organogenesis, especially during fruit ripening. In this study, we used Arabidopsis as a model system to identify critical PLL genes that are of particular importance for vascular development. Four PLL genes, named AtPLL15, AtPLL16, AtPLL19, and AtPLL26, were identified for xylem-specific expression. A knock-out T-DNA mutant of AtPLL16 displayed an increased amount of pectin, soluble sugar, and acid-soluble lignin (ASL). Interestingly, the atpll16 mutant exhibited an irregular xylem phenotype, accompanied by disordered xylem ray cells and an absence of interfascicular phloem fibers. The xylem fiber cell walls in the atpll16 mutant were thicker than those of the wild type. On the contrary, AtPLL16 overexpression resulted in expansion of the phloem and a dramatic change in the xylem-to-phloem ratios. Altogether, our data suggest that AtPLL16 as a pectate lyase plays an important role during vascular development in Arabidopsis.
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Affiliation(s)
- Yun Bai
- College of Horticulture, Jilin Agricultural University, Changchun 130118, China
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
| | - Dongdong Tian
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Peng Chen
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Dan Wu
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
| | - Kebing Du
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
- Poplar Research Center, Huazhong Agricultural University, Wuhan 430070, China
| | - Bo Zheng
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
- Poplar Research Center, Huazhong Agricultural University, Wuhan 430070, China
| | - Xueping Shi
- College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China
- Poplar Research Center, Huazhong Agricultural University, Wuhan 430070, China
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Wang S, Robertz S, Seven M, Kraemer F, Kuhn BM, Liu L, Lunde C, Pauly M, Ramírez V. A large-scale forward genetic screen for maize mutants with altered lignocellulosic properties. FRONTIERS IN PLANT SCIENCE 2023; 14:1099009. [PMID: 36959947 PMCID: PMC10028098 DOI: 10.3389/fpls.2023.1099009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Accepted: 02/21/2023] [Indexed: 06/18/2023]
Abstract
The development of efficient pipelines for the bioconversion of grass lignocellulosic feedstocks is challenging due to the limited understanding of the molecular mechanisms controlling the synthesis, deposition, and degradation of the varying polymers unique to grass cell walls. Here, we describe a large-scale forward genetic approach resulting in the identification of a collection of chemically mutagenized maize mutants with diverse alterations in their cell wall attributes such as crystalline cellulose content or hemicellulose composition. Saccharification yield, i.e. the amount of lignocellulosic glucose (Glc) released by means of enzymatic hydrolysis, is increased in two of the mutants and decreased in the remaining six. These mutants, termed candy-leaf (cal), show no obvious plant growth or developmental defects despite associated differences in their lignocellulosic composition. The identified cal mutants are a valuable tool not only to understand recalcitrance of grass lignocellulosics to enzymatic deconstruction but also to decipher grass-specific aspects of cell wall biology once the genetic basis, i.e. the location of the mutation, has been identified.
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Affiliation(s)
- Shaogan Wang
- Institute for Plant Cell Biology and Biotechnology-Cluster of Excellence on Plant Sciences, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| | - Stefan Robertz
- Institute for Plant Cell Biology and Biotechnology-Cluster of Excellence on Plant Sciences, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| | - Merve Seven
- Institute for Plant Cell Biology and Biotechnology-Cluster of Excellence on Plant Sciences, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
| | - Florian Kraemer
- Department of Plant and Microbial Biology, Energy Biosciences Institute, University of California, Berkeley, Berkeley, CA, United States
| | - Benjamin M. Kuhn
- Department of Plant and Microbial Biology, Energy Biosciences Institute, University of California, Berkeley, Berkeley, CA, United States
| | - Lifeng Liu
- Department of Plant and Microbial Biology, Energy Biosciences Institute, University of California, Berkeley, Berkeley, CA, United States
| | - China Lunde
- Plant Gene Expression Center, Agricultural Research Service, U.S. Department of Agriculture, Albany, CA, United States
| | - Markus Pauly
- Institute for Plant Cell Biology and Biotechnology-Cluster of Excellence on Plant Sciences, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
- Department of Plant and Microbial Biology, Energy Biosciences Institute, University of California, Berkeley, Berkeley, CA, United States
| | - Vicente Ramírez
- Institute for Plant Cell Biology and Biotechnology-Cluster of Excellence on Plant Sciences, Heinrich Heine University Düsseldorf, Düsseldorf, Germany
- Department of Plant and Microbial Biology, Energy Biosciences Institute, University of California, Berkeley, Berkeley, CA, United States
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Full-Chain FeCl 3 Catalyzation Is Sufficient to Boost Cellulase Secretion and Cellulosic Ethanol along with Valorized Supercapacitor and Biosorbent Using Desirable Corn Stalk. Molecules 2023; 28:molecules28052060. [PMID: 36903307 PMCID: PMC10004197 DOI: 10.3390/molecules28052060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Revised: 02/16/2023] [Accepted: 02/17/2023] [Indexed: 02/25/2023] Open
Abstract
Cellulosic ethanol is regarded as a perfect additive for petrol fuels for global carbon neutralization. As bioethanol conversion requires strong biomass pretreatment and overpriced enzymatic hydrolysis, it is increasingly considered in the exploration of biomass processes with fewer chemicals for cost-effective biofuels and value-added bioproducts. In this study, we performed optimal liquid-hot-water pretreatment (190 °C for 10 min) co-supplied with 4% FeCl3 to achieve the near-complete biomass enzymatic saccharification of desirable corn stalk for high bioethanol production, and all the enzyme-undigestible lignocellulose residues were then examined as active biosorbents for high Cd adsorption. Furthermore, by incubating Trichoderma reesei with the desired corn stalk co-supplied with 0.05% FeCl3 for the secretion of lignocellulose-degradation enzymes in vivo, we examined five secreted enzyme activities elevated by 1.3-3.0-fold in vitro, compared to the control without FeCl3 supplementation. After further supplying 1:2 (w/w) FeCl3 into the T. reesei-undigested lignocellulose residue for the thermal-carbonization process, we generated highly porous carbon with specific electroconductivity raised by 3-12-fold for the supercapacitor. Therefore, this work demonstrates that FeCl3 can act as a universal catalyst for the full-chain enhancement of biological, biochemical, and chemical conversions of lignocellulose substrates, providing a green-like strategy for low-cost biofuels and high-value bioproducts.
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Feng J, Li Z, Luo W, Liang G, Xu Y, Chong K. COG2 negatively regulates chilling tolerance through cell wall components altered in rice. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2023; 136:19. [PMID: 36680595 DOI: 10.1007/s00122-023-04261-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Accepted: 10/10/2022] [Indexed: 06/17/2023]
Abstract
Chilling-tolerant QTL gene COG2 encoded an extensin and repressed chilling tolerance by affecting the compositions of cell wall. Rice as a major crop is susceptible to chilling stress. Chilling tolerance is a complex trait controlled by multiple quantitative trait loci (QTLs). Here, we identify a QTL gene, COG2, that negatively regulates cold tolerance at seedling stage in rice. COG2 overexpression transgenic plants are sensitive to cold, whereas knockout transgenic lines enhance chilling tolerance. Natural variation analysis shows that Hap1 is a specific haplotype in japonica/Geng rice and correlates with chilling tolerance. The SNP1 in COG2 promoter is a specific divergency and leads to the difference in the expression level of COG2 between japonica/Geng and indica/Xian cultivars. COG2 encodes a cell wall-localized extensin and affects the compositions of cell wall, including pectin and cellulose, to defense the chilling stress. The results extend the understanding of the adaptation to the environment and provide an editing target for molecular design breeding of cold tolerance in rice.
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Affiliation(s)
- Jinglei Feng
- The Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhitao Li
- The Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of the Chinese Academy of Sciences, Beijing, 100049, China
| | - Wei Luo
- The Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Guohua Liang
- Jiangsu Key Laboratory of Crop Genetics and Physiology/Co-Innovation Centre for Modern Production Technology of Grain Crops, Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou, 225009, China
| | - Yunyuan Xu
- The Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100093, China
| | - Kang Chong
- The Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
- University of the Chinese Academy of Sciences, Beijing, 100049, China.
- The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100093, China.
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Bisht D, Kumar N, Singh Y, Malik R, Djalovic I, Dhaka NS, Pal N, Balyan P, Mir RR, Singh VK, Dhankher OP, Kumar U, Kumar S. Effect of stem structural characteristics and cell wall components related to stem lodging resistance in a newly identified mutant of hexaploid wheat ( Triticum aestivum L.). FRONTIERS IN PLANT SCIENCE 2022; 13:1067063. [PMID: 36483946 PMCID: PMC9723335 DOI: 10.3389/fpls.2022.1067063] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Accepted: 11/07/2022] [Indexed: 05/31/2023]
Abstract
In wheat, lodging is affected by anatomical and chemical characteristics of the stem cell wall. Plant characteristics determining the stem strength were measured in lodging tolerant mutant (PMW-2016-1) developed through mutation breeding utilizing hexaploid wheat cultivar, DPW-621-50. Various anatomical features, chemical composition, and mechanical strength of the culms of newly developed lodging-tolerant mutant (PMW-2016-1) and parent (DPW-621-50), were examined by light microscopy, the Klason method, prostate tester coupled with a Universal Tensile Machine, and Fourier Transform Infrared Spectroscopy. Significant changes in the anatomical features, including the outer radius of the stem, stem wall thickness, and the proportions of various tissues, and vascular bundles were noticed. Chemical analysis revealed that the lignin level in the PMW-2016-1 mutant was higher and exhibited superiority in stem strength compared to the DPW-621-50 parent line. The force (N) required to break the internodes of mutant PMW-2016-1 was higher than that of DPW-621-50. The results suggested that the outer stem radius, stem wall thickness, the proportion of sclerenchyma tissues, the number of large vascular bundles, and lignin content are important factors that affect the mechanical strength of wheat stems, which can be the key parameters for the selection of varieties having higher lodging tolerance. Preliminary studies on the newly identified mutant PMW-2016-1 suggested that this mutant may possess higher lodging tolerance because it has a higher stem strength than DPW-621-50 and can be used as a donor parent for the development of lodging-tolerant wheat varieties.
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Affiliation(s)
- Darshana Bisht
- Molecular Cytogenetics Laboratory, Department of Molecular Biology & Genetic Engineering, College of Basic Science & Humanities, Govind Ballabh Pant University of Agriculture and Technology, Pantnagar, India
| | - Naveen Kumar
- Molecular Cytogenetics Laboratory, Department of Molecular Biology & Genetic Engineering, College of Basic Science & Humanities, Govind Ballabh Pant University of Agriculture and Technology, Pantnagar, India
| | - Yogita Singh
- Department of Molecular Biology & Biotechnology, College of Biotechnology, Chaudhary Charan Singh Haryana Agricultural University, Hisar, India
| | - Rashmi Malik
- Department of Genetics & Plant Breeding, College of Agriculture, Govind Ballabh Pant University of Agriculture & Technology, Pantnagar, India
| | - Ivica Djalovic
- Institute of Field and Vegetable Crops, National Institute of the Republic of Serbia, Novi Sad, Serbia
| | - Narendra Singh Dhaka
- Department of Genetics & Plant Breeding, College of Agriculture, Govind Ballabh Pant University of Agriculture & Technology, Pantnagar, India
| | - Neeraj Pal
- Molecular Cytogenetics Laboratory, Department of Molecular Biology & Genetic Engineering, College of Basic Science & Humanities, Govind Ballabh Pant University of Agriculture and Technology, Pantnagar, India
| | - Priyanka Balyan
- Department of Botany, Deva Nagri Post Graduate College, CCS University, Meerut, India
| | - Reyazul Rouf Mir
- Division of Genetics and Plant Breeding, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir (SKUAST-Kashmir), Srinagar, India
| | - Vinay Kumar Singh
- Department of Mechanical Engineering, College of Engineering, Govind Ballabh Pant University of Agriculture and Technology, Pantnagar, India
| | - Om Parkash Dhankher
- Stockbridge School of Agriculture, University of Massachusetts, Amherst, MA, United States
| | - Upendra Kumar
- Department of Molecular Biology & Biotechnology, College of Biotechnology, Chaudhary Charan Singh Haryana Agricultural University, Hisar, India
| | - Sundip Kumar
- Molecular Cytogenetics Laboratory, Department of Molecular Biology & Genetic Engineering, College of Basic Science & Humanities, Govind Ballabh Pant University of Agriculture and Technology, Pantnagar, India
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9
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Effects of Biochar and Nitrogen Application on Rice Biomass Saccharification, Bioethanol Yield and Cell Wall Polymers Features. Int J Mol Sci 2022; 23:ijms232113635. [DOI: 10.3390/ijms232113635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Revised: 10/31/2022] [Accepted: 11/04/2022] [Indexed: 11/09/2022] Open
Abstract
Rice is a major food crop that produces abundant biomass wastes for biofuels. To improve rice biomass and yield, nitrogen (N) fertilizer is excessively used, which is not eco-friendly. Alternatively, biochar (B) application is favored to improve rice biomass and yield under low chemical fertilizers. To minimize the reliance on N fertilizer, we applied four B levels (0, 10, 20, and 30 t B ha−1) combined with two N rates (low-135 and high-180 kg ha−1) to improve biomass yield. Results showed that compared to control, the combined B at 20–30 t ha−1 with low N application significantly improved plant dry matter and arabinose (Ara%), while decreasing cellulose crystallinity (Crl), degree of polymerization (DP), and the ratio of xylose/arabinose (Xyl/Ara), resulting in high hexoses (% cellulose) and bioethanol yield (% dry matter). We concluded that B coupled with N can alter cell wall polymer features in paddy rice resulting in high biomass saccharification and bioethanol production.
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10
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An G, Qi Y, Zhang W, Gao H, Qian J, Larkin RM, Chen J, Kuang H. LsNRL4 enhances photosynthesis and decreases leaf angles in lettuce. PLANT BIOTECHNOLOGY JOURNAL 2022; 20:1956-1967. [PMID: 35748307 PMCID: PMC9491448 DOI: 10.1111/pbi.13878] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 06/10/2022] [Accepted: 06/19/2022] [Indexed: 06/15/2023]
Abstract
Lettuce (Lactuca sativa) is one of the most important vegetables worldwide and an ideal plant for producing protein drugs. Both well-functioning chloroplasts that perform robust photosynthesis and small leaf angles that enable dense planting are essential for high yields. In this study, we used an F2 population derived from a cross between a lettuce cultivar with pale-green leaves and large leaf angles to a cultivar with dark-green leaves and small leaf angles to clone LsNRL4, which encodes an NPH3/RPT2-Like (NRL) protein. Unlike other NRL proteins in lettuce, the LsNRL4 lacks the BTB domain. Knockout mutants engineered using CRISPR/Cas9 and transgenic lines overexpressing LsNRL4 verified that LsNRL4 contributes to chloroplast development, photosynthesis and leaf angle. The LsNRL4 gene was not present in the parent with pale-green leaves and enlarged leaf angles. Loss of LsNRL4 results in the enlargement of chloroplasts, decreases in the amount of cellular space allocated to chloroplasts and defects in secondary cell wall biosynthesis in lamina joints. Overexpressing LsNRL4 significantly improved photosynthesis and decreased leaf angles. Indeed, the plant architecture of the overexpressing lines is ideal for dense planting. In summary, we identified a novel NRL gene that enhances photosynthesis and influences plant architecture. Our study provides new approaches for the breeding of lettuce that can be grown in dense planting in the open field or in modern plant factories. LsNRL4 homologues may also be used in other crops to increase photosynthesis and improve plant architecture.
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Affiliation(s)
- Guanghui An
- Key Laboratory of Horticultural Plant Biology & Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
| | - Yetong Qi
- Key Laboratory of Horticultural Plant Biology & Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
| | - Weiyi Zhang
- Key Laboratory of Horticultural Plant Biology & Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
| | - Hairong Gao
- Biomass & Bioenergy Research CentreHuazhong Agricultural UniversityWuhanChina
| | - Jinlong Qian
- Key Laboratory of Horticultural Plant Biology & Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
| | - Robert M. Larkin
- Key Laboratory of Horticultural Plant Biology & Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
| | - Jiongjiong Chen
- Key Laboratory of Horticultural Plant Biology & Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
| | - Hanhui Kuang
- Key Laboratory of Horticultural Plant Biology & Hubei Hongshan LaboratoryHuazhong Agricultural UniversityWuhanChina
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11
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Ruan N, Dang Z, Wang M, Cao L, Wang Y, Liu S, Tang Y, Huang Y, Zhang Q, Xu Q, Chen W, Li F. FRAGILE CULM 18 encodes a UDP-glucuronic acid decarboxylase required for xylan biosynthesis and plant growth in rice. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:2320-2335. [PMID: 35104839 DOI: 10.1093/jxb/erac036] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Accepted: 01/31/2022] [Indexed: 06/14/2023]
Abstract
Although UDP-glucuronic acid decarboxylases (UXSs) have been well studied with regard to catalysing the conversion of UDP-glucuronic acid into UDP-xylose, their biological roles in grasses remain largely unknown. The rice (Oryza sativa) genome contains six UXSs, but none of them has been genetically characterized. Here, we reported on the characterization of a novel rice fragile culm mutant, fc18, which exhibited brittleness with altered cell wall and pleiotropic defects in growth. Map-based cloning and transgenic analyses revealed that the FC18 gene encodes a cytosol-localized OsUXS3 and is widely expressed with higher expression in xylan-rich tissues. Monosaccharide analysis showed that the xylose level was decreased in fc18, and cell wall fraction determinations confirmed that the xylan content in fc18 was lower, suggesting that UDP-xylose from FC18 participates in xylan biosynthesis. Moreover, the fc18 mutant displayed defective cellulose properties, which led to an enhancement in biomass saccharification. Furthermore, expression of genes involved in sugar metabolism and phytohormone signal transduction was largely altered in fc18. Consistent with this, the fc18 mutant exhibited significantly reduced free auxin (indole-3-acetic acid) content and lower expression levels of PIN family genes compared with wild type. Our work reveals the physiological roles of FC18/UXS3 in xylan biosynthesis, cellulose deposition, and plant growth in rice.
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Affiliation(s)
- Nan Ruan
- Rice Research Institute, Shenyang Agricultural University, Shenyang, China
| | - Zhengjun Dang
- Rice Research Institute, Shenyang Agricultural University, Shenyang, China
| | - Meihan Wang
- Rice Research Institute, Shenyang Agricultural University, Shenyang, China
| | - Liyu Cao
- Rice Research Institute, Shenyang Agricultural University, Shenyang, China
| | - Ye Wang
- Rice Research Institute, Shenyang Agricultural University, Shenyang, China
| | - Sitong Liu
- Jinzhou Academy of Science and Technology, Jinzhou, China
| | - Yijun Tang
- Rice Research Institute, Shenyang Agricultural University, Shenyang, China
| | - Yuwei Huang
- Rice Research Institute, Shenyang Agricultural University, Shenyang, China
| | - Qun Zhang
- Rice Research Institute, Shenyang Agricultural University, Shenyang, China
| | - Quan Xu
- Rice Research Institute, Shenyang Agricultural University, Shenyang, China
| | - Wenfu Chen
- Rice Research Institute, Shenyang Agricultural University, Shenyang, China
| | - Fengcheng Li
- Rice Research Institute, Shenyang Agricultural University, Shenyang, China
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12
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Zhang Y, Zhang H, Zhao H, Xia Y, Zheng X, Fan R, Tan Z, Duan C, Fu Y, Li L, Ye J, Tang S, Hu H, Xie W, Yao X, Guo L. Multi-omics analysis dissects the genetic architecture of seed coat content in Brassica napus. Genome Biol 2022; 23:86. [PMID: 35346318 PMCID: PMC8962237 DOI: 10.1186/s13059-022-02647-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Accepted: 03/07/2022] [Indexed: 01/01/2023] Open
Abstract
Background Brassica napus is an important vegetable oil source worldwide. Seed coat content is a complex quantitative trait that negatively correlates with the seed oil content in B. napus. Results Here we provide insights into the genetic basis of natural variation of seed coat content by transcriptome-wide association studies (TWAS) and genome-wide association studies (GWAS) using 382 B. napus accessions. By population transcriptomic analysis, we identify more than 700 genes and four gene modules that are significantly associated with seed coat content. We also characterize three reliable quantitative trait loci (QTLs) controlling seed coat content by GWAS. Combining TWAS and correlation networks of seed coat content-related gene modules, we find that BnaC07.CCR-LIKE (CCRL) and BnaTT8s play key roles in the determination of the trait by modulating lignin biosynthesis. By expression GWAS analysis, we identify a regulatory hotspot on chromosome A09, which is involved in controlling seed coat content through BnaC07.CCRL and BnaTT8s. We then predict the downstream genes regulated by BnaTT8s using multi-omics datasets. We further experimentally validate that BnaCCRL and BnaTT8 positively regulate seed coat content and lignin content. BnaCCRL represents a novel identified gene involved in seed coat development. Furthermore, we also predict the key genes regulating carbon allocation between phenylpropane compounds and oil during seed development in B. napus. Conclusions This study helps us to better understand the complex machinery of seed coat development and provides a genetic resource for genetic improvement of seed coat content in B. napus breeding. Supplementary Information The online version contains supplementary material available at 10.1186/s13059-022-02647-5.
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13
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Madadi M, Bakr MM, Abdulkhani A, Zahoor, Asadollahi MA, Sun C, Sun F, Abomohra AEF. Alleviating lignin repolymerization by carbocation scavenger for effective production of fermentable sugars from combined liquid hot water and green-liquor pretreated softwood biomass. ENERGY CONVERSION AND MANAGEMENT 2022; 251:114956. [DOI: 10.1016/j.enconman.2021.114956] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
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14
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Wu L, Zhang M, Zhang R, Yu H, Wang H, Li J, Wang Y, Hu Z, Wang Y, Luo Z, Li L, Wang L, Peng L, Xia T. Down-regulation of OsMYB103L distinctively alters beta-1,4-glucan polymerization and cellulose microfibers assembly for enhanced biomass enzymatic saccharification in rice. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:245. [PMID: 34961560 PMCID: PMC8713402 DOI: 10.1186/s13068-021-02093-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2021] [Accepted: 12/13/2021] [Indexed: 05/12/2023]
Abstract
BACKGROUND As a major component of plant cell walls, cellulose provides the most abundant biomass resource convertible for biofuels. Since cellulose crystallinity and polymerization have been characterized as two major features accounting for lignocellulose recalcitrance against biomass enzymatic saccharification, genetic engineering of cellulose biosynthesis is increasingly considered as a promising solution in bioenergy crops. Although several transcription factors have been identified to regulate cellulose biosynthesis and plant cell wall formation, much remains unknown about its potential roles for genetic improvement of lignocellulose recalcitrance. RESULTS In this study, we identified a novel rice mutant (Osfc9/myb103) encoded a R2R3-MYB transcription factor, and meanwhile generated OsMYB103L-RNAi-silenced transgenic lines. We determined significantly reduced cellulose levels with other major wall polymers (hemicellulose, lignin) slightly altered in mature rice straws of the myb103 mutant and RNAi line, compared to their wild type (NPB). Notably, the rice mutant and RNAi line were of significantly reduced cellulose features (crystalline index/CrI, degree of polymerization/DP) and distinct cellulose nanofibers assembly. These alterations consequently improved lignocellulose recalcitrance for significantly enhanced biomass enzymatic saccharification by 10-28% at p < 0.01 levels (n = 3) after liquid hot water and chemical (1% H2SO4, 1% NaOH) pretreatments with mature rice straws. In addition, integrated RNA sequencing with DNA affinity purification sequencing (DAP-seq) analyses revealed that the OsMYB103L might specifically mediate cellulose biosynthesis and deposition by regulating OsCesAs and other genes associated with microfibril assembly. CONCLUSIONS This study has demonstrated that down-regulation of OsMYB103L could specifically improve cellulose features and cellulose nanofibers assembly to significantly enhance biomass enzymatic saccharification under green-like and mild chemical pretreatments in rice. It has not only indicated a powerful strategy for genetic modification of plant cell walls in bioenergy crops, but also provided insights into transcriptional regulation of cellulose biosynthesis in plants.
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Affiliation(s)
- Leiming Wu
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- Laboratory of Biomass Engineering & Nanomaterial Application in Automobiles, College of Food Science & Chemical Engineering, Hubei University of Arts & Science, Xiangyang, China
- College of Life Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Mingliang Zhang
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China
| | - Ran Zhang
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Laboratory of Biomass Engineering & Nanomaterial Application in Automobiles, College of Food Science & Chemical Engineering, Hubei University of Arts & Science, Xiangyang, China
| | - Haizhong Yu
- Laboratory of Biomass Engineering & Nanomaterial Application in Automobiles, College of Food Science & Chemical Engineering, Hubei University of Arts & Science, Xiangyang, China
| | - Hailang Wang
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Laboratory of Biomass Engineering & Nanomaterial Application in Automobiles, College of Food Science & Chemical Engineering, Hubei University of Arts & Science, Xiangyang, China
| | - Jingyang Li
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, 570102, China
| | - Youmei Wang
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Laboratory of Biomass Engineering & Nanomaterial Application in Automobiles, College of Food Science & Chemical Engineering, Hubei University of Arts & Science, Xiangyang, China
| | - Zhen Hu
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Laboratory of Biomass Engineering & Nanomaterial Application in Automobiles, College of Food Science & Chemical Engineering, Hubei University of Arts & Science, Xiangyang, China
| | - Yanting Wang
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Laboratory of Biomass Engineering & Nanomaterial Application in Automobiles, College of Food Science & Chemical Engineering, Hubei University of Arts & Science, Xiangyang, China
| | - Zi Luo
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
| | - Lin Li
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
| | - Lingqiang Wang
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China
- State Key Laboratory for Conservation & Utilization of Subtropical Agro-Bioresources, College of Agriculture, Guangxi University, Nanning, China
| | - Liangcai Peng
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Laboratory of Biomass Engineering & Nanomaterial Application in Automobiles, College of Food Science & Chemical Engineering, Hubei University of Arts & Science, Xiangyang, China
| | - Tao Xia
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China.
- College of Life Science & Technology, Huazhong Agricultural University, Wuhan, 430070, China.
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15
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Wang X, Wang A, Li Y, Xu Y, Wei Q, Wang J, Lin F, Gong D, Liu F, Wang Y, Peng L, Li J. A Novel Banana Mutant " RF 1" ( Musa spp. ABB, Pisang Awak Subgroup) for Improved Agronomic Traits and Enhanced Cold Tolerance and Disease Resistance. FRONTIERS IN PLANT SCIENCE 2021; 12:730718. [PMID: 34630479 PMCID: PMC8496975 DOI: 10.3389/fpls.2021.730718] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Accepted: 08/25/2021] [Indexed: 06/13/2023]
Abstract
Banana is a major fruit crop grown in tropical and subtropical regions worldwide. Among cultivars, "FenJiao, FJ" (Musa spp. ABB, Pisang Awak subgroup) is a popular variety of bananas, due to its better sugar-acid blend and relatively small fruit shape. However, because the traditional FJ variety grows relatively high in height, it is vulnerable to lodging and unsuitable for harvesting. In this study, we sought desirable banana mutants by carrying out ethyl methanesulfonate (EMS) mutagenesis with the FJ cultivar. After the FJ shoot tips had been treated with 0.8% (v/v) EMS for 4 h, we obtained a stably inherited mutant, here called "ReFen 1" (RF1), and also observed a semi-dwarfing phenotype. Compared with the wild type (FJ), this RF1 mutant featured consistently improved agronomic traits during 5-year field experiments conducted in three distinct locations in China. Notably, the RF1 plants showed significantly enhanced cold tolerance and Sigatoka disease resistance, mainly due to a substantially increased soluble content of sugar and greater starch accumulation along with reduced cellulose deposition. Therefore, this study not only demonstrated how a powerful genetic strategy can be used in fruit crop breeding but also provided insight into the identification of novel genes for agronomic trait improvement in bananas and beyond.
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Affiliation(s)
- Xiaoyi Wang
- Hainan Banana Healthy Seedling Propagation Engineering Research Center, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Anbang Wang
- Hainan Banana Healthy Seedling Propagation Engineering Research Center, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Yujia Li
- Hainan Banana Healthy Seedling Propagation Engineering Research Center, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Yi Xu
- Hainan Banana Healthy Seedling Propagation Engineering Research Center, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Qing Wei
- Hainan Banana Healthy Seedling Propagation Engineering Research Center, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Jiashui Wang
- Hainan Banana Healthy Seedling Propagation Engineering Research Center, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Fei Lin
- Hainan Banana Healthy Seedling Propagation Engineering Research Center, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Deyong Gong
- The Fruit Tree Research Center, Institute of Subtropical Crops, Guizhou Academy of Agricultural Sciences, Xinyi, China
| | - Fei Liu
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Yanting Wang
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Liangcai Peng
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Jingyang Li
- Hainan Banana Healthy Seedling Propagation Engineering Research Center, Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
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16
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Hu Z, Wang Y, Liu J, Li Y, Wang Y, Huang J, Ai Y, Chen P, He Y, Aftab MN, Wang L, Peng L. Integrated NIRS and QTL assays reveal minor mannose and galactose as contrast lignocellulose factors for biomass enzymatic saccharification in rice. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:144. [PMID: 34174936 PMCID: PMC8235839 DOI: 10.1186/s13068-021-01987-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Accepted: 06/05/2021] [Indexed: 05/26/2023]
Abstract
BACKGROUND Identifying lignocellulose recalcitrant factors and exploring their genetic properties are essential for enhanced biomass enzymatic saccharification in bioenergy crops. Despite genetic modification of major wall polymers has been implemented for reduced recalcitrance in engineered crops, it could most cause a penalty of plant growth and biomass yield. Alternatively, it is increasingly considered to improve minor wall components, but an applicable approach is required for efficient assay of large population of biomass samples. Hence, this study collected total of 100 rice straw samples and characterized all minor wall monosaccharides and biomass enzymatic saccharification by integrating NIRS modeling and QTL profiling. RESULTS By performing classic chemical analyses and establishing optimal NIRS equations, this study examined four minor wall monosaccharides and major wall polymers (acid-soluble lignin/ASL, acid-insoluble lignin/AIL, three lignin monomers, crystalline cellulose), which led to largely varied hexoses yields achieved from enzymatic hydrolyses after two alkali pretreatments were conducted with large population of rice straws. Correlation analyses indicated that mannose and galactose can play a contrast role for biomass enzymatic saccharification at P < 0.0 l level (n = 100). Meanwhile, we found that the QTLs controlling mannose, galactose, lignin-related traits, and biomass saccharification were co-located. By combining NIRS assay with QTLs maps, this study further interpreted that the mannose-rich hemicellulose may assist AIL disassociation for enhanced biomass enzymatic saccharification, whereas the galactose-rich polysaccharides should be effectively extracted with ASL from the alkali pretreatment for condensed AIL association with cellulose microfibrils. CONCLUSIONS By integrating NIRS assay with QTL profiling for large population of rice straw samples, this study has identified that the mannose content of wall polysaccharides could positively affect biomass enzymatic saccharification, while the galactose had a significantly negative impact. It has also sorted out that two minor monosaccharides could distinctively associate with lignin deposition for wall network construction. Hence, this study demonstrates an applicable approach for fast assessments of minor lignocellulose recalcitrant factors and biomass enzymatic saccharification in rice, providing a potential strategy for bioenergy crop breeding and biomass processing.
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Affiliation(s)
- Zhen Hu
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Laboratory of Biomass Engineering and, Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China
- College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, China
| | - Youmei Wang
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Laboratory of Biomass Engineering and, Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China
| | - Jingyuan Liu
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Laboratory of Biomass Engineering and, Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China
| | - Yuqi Li
- Laboratory of Biomass Engineering and, Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China
| | - Yanting Wang
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Laboratory of Biomass Engineering and, Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China
| | - Jiangfeng Huang
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, Guangxi University, Nanning, 530004, China
| | - Yuanhang Ai
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Laboratory of Biomass Engineering and, Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China
| | - Peng Chen
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China
- Laboratory of Biomass Engineering and, Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China
| | - Yuqing He
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | | | - Lingqiang Wang
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, Guangxi University, Nanning, 530004, China.
| | - Liangcai Peng
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
- Laboratory of Biomass Engineering and, Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China.
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Chen C, Zhao X, Wang X, Wang B, Li H, Feng J, Wu A. Mutagenesis of UDP-xylose epimerase and xylan arabinosyl-transferase decreases arabinose content and improves saccharification of rice straw. PLANT BIOTECHNOLOGY JOURNAL 2021; 19:863-865. [PMID: 33471384 PMCID: PMC8131053 DOI: 10.1111/pbi.13552] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Revised: 01/12/2021] [Accepted: 01/14/2021] [Indexed: 05/27/2023]
Affiliation(s)
- Chen Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro‐bioresourcesGuangzhouChina
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant GermplasmCollege of Forestry and Landscape ArchitecturesSouth China Agricultural UniversityGuangzhouChina
| | - Xianhai Zhao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro‐bioresourcesGuangzhouChina
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant GermplasmCollege of Forestry and Landscape ArchitecturesSouth China Agricultural UniversityGuangzhouChina
| | - Xuchuan Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro‐bioresourcesGuangzhouChina
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant GermplasmCollege of Forestry and Landscape ArchitecturesSouth China Agricultural UniversityGuangzhouChina
| | - Bo Wang
- College of AgricultureSouth China Agricultural UniversityGuangzhouChina
| | - Huiling Li
- State Key Laboratory for Conservation and Utilization of Subtropical Agro‐bioresourcesGuangzhouChina
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant GermplasmCollege of Forestry and Landscape ArchitecturesSouth China Agricultural UniversityGuangzhouChina
| | - Jiaxun Feng
- State Key Laboratory for Conservation and Utilization of Subtropical Agro‐bioresourcesGuangxi Research Center for Microbial and Enzyme Engineering TechnologyCollege of Life Science and TechnologyGuangxi UniversityNanningChina
| | - Aimin Wu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro‐bioresourcesGuangzhouChina
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant GermplasmCollege of Forestry and Landscape ArchitecturesSouth China Agricultural UniversityGuangzhouChina
- Guangdong Laboratory of Lingnan Modern AgricultureGuangzhouChina
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18
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Gabbanelli N, Erbetta E, Sanz Smachetti ME, Lorenzo M, Talia PM, Ramírez I, Vera M, Durruty I, Pontaroli AC, Echarte MM. Towards an ideotype for food-fuel dual-purpose wheat in Argentina with focus on biogas production. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:85. [PMID: 33820551 PMCID: PMC8022367 DOI: 10.1186/s13068-021-01941-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Accepted: 03/27/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND Wheat straw, one of the most abundant agricultural residues worldwide, can be used to produce biogas, which is considered one of the most efficiently produced renewable energies. Wheat grown with the dual-purpose of producing food and biogas should display simultaneously high grain and straw yields, low lodging susceptibility and high conversion efficiency of straw into biogas. The aims of this study were to determine the best food-fuel dual-purpose wheat candidates among 36 wheat genotypes-including French, CIMMYT and local (Criollo) germplasm-used in breeding programs in Argentina and to gain some insights into the relationships between key traits relevant for dual-purpose wheat genotypes. RESULTS High variability in individual key traits for dual-purpose wheat ideotype has been found. Genotypes of French origin displayed the highest grain yield, and those of CIMMYT origin, the lowest straw yield. Genotypes of Criollo origin showed the highest lodging susceptibility, and French ones, the lowest. Straw yield was positively correlated with grain yield in all genotypes, and negatively correlated with plant height in genotypes of Criollo origin. Straw conversion into biogas was measured in terms of the biogas potential production and kinetic parameters Bmax (maximum specific biogas production) and k (first-order kinetic constant) were analyzed. All key traits were analyzed together by a principal component analysis. Baguette 31 and SNR Nogal, two genotypes of French origin, showed high grain yield, high-to-very high straw yield, low lodging susceptibility, and moderate-to-high Bmax and k. Buck Guapo and Buck Baqueano, two genotypes of Criollo origin, displayed good values for grain yield, straw yield and Bmax and k. However, their high lodging susceptibility precludes their production in shallow soils or high-input systems. Lastly, some old genotypes (e.g. Klein Atlas) harbored a good combination of all key traits and could prove valuable to be included in future breeding programs for dual-purpose wheat. CONCLUSIONS While none of the genotypes excelled in every key trait, a few candidates showed potential for dual-purpose ideotype, particularly Baguette 31 and SNR Nogal. The challenge lays in gathering all attributes for food and 2G fuel in the same genotype.
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Affiliation(s)
- Nadia Gabbanelli
- Unidad Integrada Balcarce (Estación Experimental Agropecuaria Balcarce, Instituto Nacional de Tecnología Agropecuaria - Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata), CC 276, 7620 Balcarce, Argentina
- Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible (Estación Experimental Agropecuaria Balcarce, Instituto Nacional de Tecnología Agropecuaria – Consejo Nacional de Investigaciones Científicas y Técnicas), CC 276, 7620 Balcarce, Argentina
| | - Elisa Erbetta
- Unidad Integrada Balcarce (Estación Experimental Agropecuaria Balcarce, Instituto Nacional de Tecnología Agropecuaria - Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata), CC 276, 7620 Balcarce, Argentina
- Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible (Estación Experimental Agropecuaria Balcarce, Instituto Nacional de Tecnología Agropecuaria – Consejo Nacional de Investigaciones Científicas y Técnicas), CC 276, 7620 Balcarce, Argentina
| | - Maria Eugenia Sanz Smachetti
- Unidad Integrada Balcarce (Estación Experimental Agropecuaria Balcarce, Instituto Nacional de Tecnología Agropecuaria - Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata), CC 276, 7620 Balcarce, Argentina
- Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible (Estación Experimental Agropecuaria Balcarce, Instituto Nacional de Tecnología Agropecuaria – Consejo Nacional de Investigaciones Científicas y Técnicas), CC 276, 7620 Balcarce, Argentina
| | - Máximo Lorenzo
- Unidad Integrada Balcarce (Estación Experimental Agropecuaria Balcarce, Instituto Nacional de Tecnología Agropecuaria - Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata), CC 276, 7620 Balcarce, Argentina
| | - Paola Mónica Talia
- Instituto de Agrobiotecnología y Biología Molecular (IABIMO), Instituto Nacional de Tecnología Agropecuaria (INTA), Consejo Nacional de Investigaciones Científicas Y Tecnológicas (CONICET), Hurlingham, Buenos Aires, Argentina
| | - Ignacio Ramírez
- Unidad Integrada Balcarce (Estación Experimental Agropecuaria Balcarce, Instituto Nacional de Tecnología Agropecuaria - Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata), CC 276, 7620 Balcarce, Argentina
| | - Magdalena Vera
- Unidad Integrada Balcarce (Estación Experimental Agropecuaria Balcarce, Instituto Nacional de Tecnología Agropecuaria - Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata), CC 276, 7620 Balcarce, Argentina
| | - Ignacio Durruty
- Grupo de Ingeniería Bioquímica, INCITAA, Facultad de Ingeniería, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
| | - Ana Clara Pontaroli
- Unidad Integrada Balcarce (Estación Experimental Agropecuaria Balcarce, Instituto Nacional de Tecnología Agropecuaria - Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata), CC 276, 7620 Balcarce, Argentina
- Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible (Estación Experimental Agropecuaria Balcarce, Instituto Nacional de Tecnología Agropecuaria – Consejo Nacional de Investigaciones Científicas y Técnicas), CC 276, 7620 Balcarce, Argentina
| | - Maria Mercedes Echarte
- Unidad Integrada Balcarce (Estación Experimental Agropecuaria Balcarce, Instituto Nacional de Tecnología Agropecuaria - Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata), CC 276, 7620 Balcarce, Argentina
- Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible (Estación Experimental Agropecuaria Balcarce, Instituto Nacional de Tecnología Agropecuaria – Consejo Nacional de Investigaciones Científicas y Técnicas), CC 276, 7620 Balcarce, Argentina
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19
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The titers of rice tungro bacilliform virus dictate the expression levels of genes related to cell wall dynamics in rice plants affected by tungro disease. Arch Virol 2021; 166:1325-1336. [PMID: 33660107 DOI: 10.1007/s00705-021-05006-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Accepted: 01/04/2021] [Indexed: 10/22/2022]
Abstract
Rice tungro disease (RTD) is a devastating disease of rice caused by combined infection with rice tungro bacilliform virus (RTBV) and rice tungro spherical virus (RTSV), with one of the main symptoms being stunting. To dissect the molecular events responsible for RTD-induced stunting, the expression patterns of 23 cell-wall-related genes were examined in different rice lines with the same titers of RTSV but different titers of RTBV and in lines where only RTBV was present. Genes encoding cellulose synthases, expansins, glycosyl hydrolases, exostosins, and xyloglucan galactosyl transferase showed downregulation, whereas those encoding defensin or defensin-like proteins showed upregulation with increasing titers of RTBV. RTSV titers did not affect the expression levels of these genes. A similar relationship was seen for the reduction in the cellulose and pectin content and the accumulation of lignin. In silico analysis of promoters of the genes indicated a possible link to transcription factors reported earlier to respond to viral titers in rice. These results suggest a common network in which the genes related to the cell wall components are affected during infection with diverse viruses in rice.
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20
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Dai Y, Hu B, Yang Q, Nie L, Sun D. Comparison of the effects of different pretreatments on the structure and enzymatic hydrolysis of Miscanthus. Biotechnol Appl Biochem 2021; 69:548-557. [PMID: 33608903 DOI: 10.1002/bab.2131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Miscanthus is regarded as a desired bioenergy crop with enormous lignocellulose residues for biofuels and other chemical products. In this study, the effect of different pretreatments (including microwave, NaOH, CaO, and microwave + NaOH/CaO) on sugar yields was investigated, leading to largely varied hexose yields at 4.0-73.4% (% cellulose) released from enzymatic hydrolysis of pretreated Miscanthus residues. Among them, the highest yield of 73.4% for hexoses was obtained from 12% NaOH (w/v) solution pretreatment, whereas 1% CaO (w/w) and microwave pretreatment resulted in a lower hexose yield than the control (without pretreatment). The sugar yield from microwave followed with 1% NaOH pretreatment was 4.3 times higher than that of microwave followed with 1% CaO. However, the enzymatic hydrolysis efficiencies of the sample were 15.2% and 58.5% under microwave pretreatment followed by 12% NaOH or 12.5% CaO, respectively, which were lower than those of the same concentration of alkali (NaOH and CaO) pretreatments. To investigate the mechanism of varied enzymatic saccharification under different pretreatments, the changes in the surface structure and porosity of the Miscanthus-pretreated lignocelluses were studied by means of Fourier transform infrared, Congo red staining, and scanning electron microscopy analysis. The results show that the different pretreatments destroy the cell wall cladding structure and reduce the bonding force between cellulose, hemicellulose, and lignin to different degrees, therefore increasing the accessibility of cellulose and enhancing cellulose digestion.
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Affiliation(s)
- Yongyong Dai
- School of Materials and Chemical Engineering, Hubei University of Technology, Wuhan, People's Republic of China
| | - Bing Hu
- School of Materials and Chemical Engineering, Hubei University of Technology, Wuhan, People's Republic of China
| | - Qiaomei Yang
- College of Plant science and Technology, Huazhong Agricultural University, Wuhan, People's Republic of China
| | - Longhui Nie
- School of Materials and Chemical Engineering, Hubei University of Technology, Wuhan, People's Republic of China
| | - Dan Sun
- School of Materials and Chemical Engineering, Hubei University of Technology, Wuhan, People's Republic of China
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21
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Chen C, Deng X, Kong W, Qaseem MF, Zhao S, Li Y, Wu AM. Rice Straws With Different Cell Wall Components Differ on Abilities of Saccharification. Front Bioeng Biotechnol 2021; 8:624314. [PMID: 33553128 PMCID: PMC7855461 DOI: 10.3389/fbioe.2020.624314] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2020] [Accepted: 12/21/2020] [Indexed: 11/13/2022] Open
Abstract
Rice straw has an enormous amount of biomass for energy use, but the complexity of the cell wall component hinders technical processes. Although belonging to rice straws, the straws from different varieties should be with different treatment strategies to obtain best energy efficiency. To confirm this hypothesis, 7 different rice varieties (RPY GENG, RIL269, RIL272, RIL31, RIL57, RIL06, LUOHUI 9) with different cell wall traits from RIL population were evaluated for their response toward different pretreatments. For japonica RPY GENG, 2% of H2SO4 acid was best pre-treatment while high acid (5% of H2SO4) pretreatment caused undue loss. For Indica LUOHUI 9 rice, high acid pretreatment was suitable, while RIL57 had maximum of glucose yield with high alkali (10% NaOH) pretreatment. High-concentration alkali pretreatment is the most convenient and effective pretreatment method for the treatment of unknown varieties of rice straws, because the lignin has been removed and has the lowest negative effects on the glucose yield under the high alkali condition. As the RILs used in this study vary considerably in their wall structure, an understanding of their response to different pre-treatments confirms our hypothesis and help us to understand the influence of different wall compositions on the final output.
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Affiliation(s)
- Chen Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China.,Guangdong Laboratory of Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, China.,Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architectures, South China Agricultural University, Guangzhou, China
| | - Xiaoxiao Deng
- State Key Laboratory for Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
| | - Weilong Kong
- State Key Laboratory for Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
| | - Mirza Faisal Qaseem
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China.,Guangdong Laboratory of Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, China.,Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architectures, South China Agricultural University, Guangzhou, China
| | - Shuai Zhao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangxi Research Center for Microbial and Enzyme Engineering Technology, College of Life Science and Technology, Guangxi University, Nanning, China
| | - Yangsheng Li
- State Key Laboratory for Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, China
| | - Ai-Min Wu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China.,Guangdong Laboratory of Lingnan Modern Agriculture, South China Agricultural University, Guangzhou, China.,Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architectures, South China Agricultural University, Guangzhou, China
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22
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A grass-specific cellulose-xylan interaction dominates in sorghum secondary cell walls. Nat Commun 2020; 11:6081. [PMID: 33247125 PMCID: PMC7695714 DOI: 10.1038/s41467-020-19837-z] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Accepted: 10/27/2020] [Indexed: 01/02/2023] Open
Abstract
Sorghum (Sorghum bicolor L. Moench) is a promising source of lignocellulosic biomass for the production of renewable fuels and chemicals, as well as for forage. Understanding secondary cell wall architecture is key to understanding recalcitrance i.e. identifying features which prevent the efficient conversion of complex biomass to simple carbon units. Here, we use multi-dimensional magic angle spinning solid-state NMR to characterize the sorghum secondary cell wall. We show that xylan is mainly in a three-fold screw conformation due to dense arabinosyl substitutions, with close proximity to cellulose. We also show that sorghum secondary cell walls present a high ratio of amorphous to crystalline cellulose as compared to dicots. We propose a model of sorghum cell wall architecture which is dominated by interactions between three-fold screw xylan and amorphous cellulose. This work will aid the design of low-recalcitrance biomass crops, a requirement for a sustainable bioeconomy. Sorghum is a source of lignocellulosic biomass for the production of renewable fuels. Here the authors characterise the sorghum secondary cell wall using multi-dimensional magic angle spinning solid-state NMR and present a model dominated by interactions between three-fold screw xylan and amorphous cellulose.
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23
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Xu Y, Hu D, Hou X, Shen J, Liu J, Cen X, Fu J, Li X, Hu H, Xiong L. OsTMF attenuates cold tolerance by affecting cell wall properties in rice. THE NEW PHYTOLOGIST 2020; 227:498-512. [PMID: 32176820 DOI: 10.1111/nph.16549] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2019] [Accepted: 03/04/2020] [Indexed: 05/15/2023]
Abstract
Plant cell wall composition and structure can be modified as plants adapt to environmental stresses; however, the underlying regulatory mechanisms remain elusive. Here, we report that OsTMF, a homologue of the human TATA modulatory factor (TMF) in rice (Oryza sativa) and highly conserved in plants, negatively regulates cold tolerance through modification of cell wall properties. Cold stress increased the expression of OsTMF and accumulation of OsTMF in the nucleus, where OsTMF acts as a transcription activator and modulates the expression of genes involved in pectin degradation (OsBURP16), cellulose biosynthesis (OsCesA4 and OsCesA9), and cell wall structural maintenance (genes encoding proline-rich proteins and peroxidases). OsTMF directly activated the expression of OsBURP16, OsCesA4, and OsCesA9 through binding to the TATA cis-elements in their promoters. Under cold stress conditions, OsTMF negatively regulated pectin content and peroxidase activity and positively regulated cellulose content, causing corresponding alterations to cell wall properties, all of which collectively contribute to the negative effect of OsTMF on cold tolerance. Our findings unravel a previously unreported molecular mechanism of a conserved plant TMF protein in the regulation of cell wall changes under cold stress.
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Affiliation(s)
- Yan Xu
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
- Key Laboratory of Biofuels, Qingdao Engineering Research Center of Biomass Resources and Environment, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China
| | - Dan Hu
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Xin Hou
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Jianqiang Shen
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Juhong Liu
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Xiang Cen
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Jie Fu
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Xianghua Li
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Honghong Hu
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
| | - Lizhong Xiong
- National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan, 430070, China
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24
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Zhang R, Hu H, Wang Y, Hu Z, Ren S, Li J, He B, Wang Y, Xia T, Chen P, Xie G, Peng L. A novel rice fragile culm 24 mutant encodes a UDP-glucose epimerase that affects cell wall properties and photosynthesis. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:2956-2969. [PMID: 32064495 PMCID: PMC7260720 DOI: 10.1093/jxb/eraa044] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Accepted: 01/23/2020] [Indexed: 05/20/2023]
Abstract
UDP-glucose epimerases (UGEs) are essential enzymes for catalysing the conversion of UDP-glucose (UDP-Glc) into UDP-galactose (UDP-Gal). Although UDP-Gal has been well studied as the substrate for the biosynthesis of carbohydrates, glycolipids, and glycoproteins, much remains unknown about the biological function of UGEs in plants. In this study, we selected a novel rice fragile culm 24 (Osfc24) mutant and identified it as a nonsense mutation of the FC24/OsUGE2 gene. The Osfc24 mutant shows a brittleness phenotype with significantly altered cell wall composition and disrupted orientation of the cellulose microfibrils. We found significantly reduced accumulation of arabinogalactan proteins in the cell walls of the mutant, which may consequently affect plant growth and cell wall deposition, and be responsible for the altered cellulose microfibril orientation. The mutant exhibits dwarfism and paler leaves with significantly decreased contents of galactolipids and chlorophyll, resulting in defects in plant photosynthesis. Based on our results, we propose a model for how OsUGE2 participates in two distinct metabolic pathways to co-modulate cellulose biosynthesis and cell wall assembly by dynamically providing UDP-Gal and UDP-Glc substrates.
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Affiliation(s)
- Ran Zhang
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, China
| | - Huizhen Hu
- State Key Laboratory of Biocatalysis & Enzyme Engineering, College of Life Science, Hubei University, Wuhan, China
| | - Youmei Wang
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, China
| | - Zhen Hu
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, China
| | - Shuangfeng Ren
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, China
| | - Jiaying Li
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, China
| | - Boyang He
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, China
| | - Yanting Wang
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, China
| | - Tao Xia
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, China
- College of Life Science & Technology, Huazhong Agricultural University, Wuhan, China
| | - Peng Chen
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, China
| | - Guosheng Xie
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, China
| | - Liangcai Peng
- Biomass & Bioenergy Research Centre, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, China
- Correspondence:
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25
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Wu Y, Wang M, Yu L, Tang SW, Xia T, Kang H, Xu C, Gao H, Madadi M, Alam A, Cheng L, Peng L. A mechanism for efficient cadmium phytoremediation and high bioethanol production by combined mild chemical pretreatments with desirable rapeseed stalks. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 708:135096. [PMID: 31806312 DOI: 10.1016/j.scitotenv.2019.135096] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Revised: 10/17/2019] [Accepted: 10/19/2019] [Indexed: 05/27/2023]
Abstract
Cadmium (Cd) is one of the most hazardous trace metals, and rapeseed is a major oil crop over the world with considerable lignocellulose residues applicable for trace metal phytoremediation and cellulosic ethanol co-production. In this study, we examined that two distinct rapeseed cultivars could accumulate Cd at 72.48 and 43.70 ug/g dry stalk, being the highest Cd accumulation among all major agricultural food crops as previously reported. The Cd accumulation significantly increased pectin deposition as a major factor for trace metal association with lignocellulose. Meanwhile, the Cd-accumulated rapeseed stalks contained much reduced wall polymers (hemicellulose, lignin) and cellulose degree of polymerization, leading to improved lignocellulose enzymatic hydrolysis. Notably, three optimal chemical pretreatments were performed for enhanced biomass enzymatic saccharification and bioethanol production by significantly increasing cellulose accessibility and lignocellulose porosity, along with a complete Cd release for collection and recycling. Hence, this study proposed a mechanism model interpreting why rapeseed stalks are able to accumulate much Cd and how the Cd-accumulated stalks are of enhanced biomass saccharification. It has also provided a powerful technology for both cost-effective Cd phytoremediation and value-added bioethanol co-production with minimum waste release.
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Affiliation(s)
- Yue Wu
- Biomass & Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; Laboratory of Biomass Engineering and Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China
| | - Meiling Wang
- Biomass & Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; Laboratory of Biomass Engineering and Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China
| | - Li Yu
- Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Oil Crops and Key Laboratory of Detection for Mycotoxins, Ministry of Agriculture, Wuhan 430062, China.
| | - Shang-Wen Tang
- Laboratory of Biomass Engineering and Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China
| | - Tao Xia
- Biomass & Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; Laboratory of Biomass Engineering and Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China; College of Life Science & Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Heng Kang
- Biomass & Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; Laboratory of Biomass Engineering and Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China
| | - Chengbao Xu
- Biomass & Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; Laboratory of Biomass Engineering and Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China
| | - Hairong Gao
- Biomass & Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; Laboratory of Biomass Engineering and Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China
| | - Meysam Madadi
- Biomass & Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Aftab Alam
- Biomass & Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Liangliang Cheng
- Biomass & Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Liangcai Peng
- Biomass & Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; Laboratory of Biomass Engineering and Nanomaterial Application in Automobiles, College of Food Science and Chemical Engineering, Hubei University of Arts and Science, Xiangyang, China.
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Weidener D, Dama M, Dietrich SK, Ohrem B, Pauly M, Leitner W, Domínguez de María P, Grande PM, Klose H. Multiscale analysis of lignocellulose recalcitrance towards OrganoCat pretreatment and fractionation. BIOTECHNOLOGY FOR BIOFUELS 2020; 13:155. [PMID: 32944071 PMCID: PMC7487623 DOI: 10.1186/s13068-020-01796-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2020] [Accepted: 09/01/2020] [Indexed: 05/15/2023]
Abstract
BACKGROUND Biomass recalcitrance towards pretreatment and further processing can be related to the compositional and structural features of the biomass. However, the exact role and relative importance to those structural attributes has still to be further evaluated. Herein, ten different types of biomass currently considered to be important raw materials for biorefineries were chosen to be processed by the recently developed, acid-catalyzed OrganoCat pretreatment to produce cellulose-enriched pulp, sugars, and lignin with different amounts and qualities. Using wet chemistry analysis and NMR spectroscopy, the generic factors of lignocellulose recalcitrance towards OrganoCat were determined. RESULTS The different materials were processed applying different conditions (e.g., type of acid catalyst and temperature), and fractions with different qualities were obtained. Raw materials and products were characterized in terms of their compositional and structural features. For the first time, generic correlation coefficients were calculated between the measured chemical and structural features and the different OrganoCat product yields and qualities. Especially lignin-related factors displayed a detrimental role for enzymatic pulp hydrolysis, as well as sugar and lignin yield exhibiting inverse correlation coefficients. Hemicellulose appeared to have less impact, not being as detrimental as lignin factors, but xylan-O-acetylation was inversely correlated with product yield and qualities. CONCLUSION These results illustrate the role of generic features of lignocellulosic recalcitrance towards acidic pretreatments and fractionation, exemplified in the OrganoCat strategy. Discriminating between types of lignocellulosic biomass and highlighting important compositional variables, the improved understanding of how these parameters affect OrganoCat products will ameliorate bioeconomic concepts from agricultural production to chemical products. Herein, a methodological approach is proposed.
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Affiliation(s)
- Dennis Weidener
- Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich, Leo- Brandt-Straße, 52425 Jülich, Germany
- Institute of Technical and Macromolecular Chemistry (ITMC), RWTH Aachen University, Worringer Weg 1, 52074 Aachen, Germany
- Bioeconomy Science Center (BioSC) C/O Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Murali Dama
- Bioeconomy Science Center (BioSC) C/O Forschungszentrum Jülich, 52425 Jülich, Germany
- Institute for Plant Cell Biology and Biotechnology, Heinrich Heine University, Universitätsstraße. 1, 40225 Düsseldorf, Germany
| | - Sabine K. Dietrich
- Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich, Leo- Brandt-Straße, 52425 Jülich, Germany
- Bioeconomy Science Center (BioSC) C/O Forschungszentrum Jülich, 52425 Jülich, Germany
- Institute of Biology I, RWTH Aachen University, Worringerweg 1, 52074 Aachen, Germany
| | - Benedict Ohrem
- Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich, Leo- Brandt-Straße, 52425 Jülich, Germany
- Bioeconomy Science Center (BioSC) C/O Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Markus Pauly
- Bioeconomy Science Center (BioSC) C/O Forschungszentrum Jülich, 52425 Jülich, Germany
- Institute for Plant Cell Biology and Biotechnology, Heinrich Heine University, Universitätsstraße. 1, 40225 Düsseldorf, Germany
| | - Walter Leitner
- Institute of Technical and Macromolecular Chemistry (ITMC), RWTH Aachen University, Worringer Weg 1, 52074 Aachen, Germany
- Max Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, 45470 Mülheim an Der Ruhr, Germany
| | | | - Philipp M. Grande
- Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich, Leo- Brandt-Straße, 52425 Jülich, Germany
- Bioeconomy Science Center (BioSC) C/O Forschungszentrum Jülich, 52425 Jülich, Germany
| | - Holger Klose
- Institute of Bio- and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich, Leo- Brandt-Straße, 52425 Jülich, Germany
- Bioeconomy Science Center (BioSC) C/O Forschungszentrum Jülich, 52425 Jülich, Germany
- Institute of Biology I, RWTH Aachen University, Worringerweg 1, 52074 Aachen, Germany
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Rocha JRDASDC, Marçal TDS, Salvador FV, da Silva AC, Carneiro PCS, de Resende MDV, Carneiro JDC, Azevedo ALS, Pereira JF, Machado JC. Unraveling candidate genes underlying biomass digestibility in elephant grass (Cenchrus purpureus). BMC PLANT BIOLOGY 2019; 19:548. [PMID: 31822283 PMCID: PMC6905061 DOI: 10.1186/s12870-019-2180-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2019] [Accepted: 12/01/2019] [Indexed: 05/08/2023]
Abstract
BACKGROUND Elephant grass [Cenchrus purpureus (Schumach.) Morrone] is used for bioenergy and animal feed. In order to identify candidate genes that could be exploited for marker-assisted selection in elephant grass, this study aimed to investigate changes in predictive accuracy using genomic relationship information and simple sequence repeats for eight traits (height, green biomass, dry biomass, acid and neutral detergent fiber, lignin content, biomass digestibility, and dry matter concentration) linked to bioenergetics and animal feeding. RESULTS We used single-step, genome-based best linear unbiased prediction and genome association methods to investigate changes in predictive accuracy and find candidate genes using genomic relationship information. Genetic variability (p < 0.05) was detected for most of the traits evaluated. In general, the overall means for the traits varied widely over the cuttings, which was corroborated by a significant genotype by cutting interaction. Knowing the genomic relationships increased the predictive accuracy of the biomass quality traits. We found that one marker (M28_161) was significantly associated with high values of biomass digestibility. The marker had moderate linkage disequilibrium with another marker (M35_202) that, in general, was detected in genotypes with low values of biomass digestibility. In silico analysis revealed that both markers have orthologous regions in other C4 grasses such as Setaria viridis, Panicum hallii, and Panicum virgatum, and these regions are located close to candidate genes involved in the biosynthesis of cell wall molecules (xyloglucan and lignin), which support their association with biomass digestibility. CONCLUSIONS The markers and candidate genes identified here are useful for breeding programs aimed at changing biomass digestibility in elephant grass. These markers can be used in marker-assisted selection to grow elephant grass cultivars for different uses, e.g., bioenergy production, bio-based products, co-products, bioactive compounds, and animal feed.
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Głazowska S, Baldwin L, Mravec J, Bukh C, Fangel JU, Willats WG, Schjoerring JK. The source of inorganic nitrogen has distinct effects on cell wall composition in Brachypodium distachyon. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:6461-6473. [PMID: 31504748 PMCID: PMC6859728 DOI: 10.1093/jxb/erz388] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Accepted: 08/19/2019] [Indexed: 05/22/2023]
Abstract
Plants have evolved different strategies to utilize various forms of nitrogen (N) from the environment. While regulation of plant growth and development in response to application of inorganic N forms has been characterized, our knowledge about the effect on cell wall structure and composition is quite limited. In this study, we analysed cell walls of Brachypodium distachyon supplied with three types of inorganic N (NH4NO3, NO3-, or NH4+). Cell wall profiles showed distinct alterations in both the quantity and structures of individual polymers. Nitrate stimulated cellulose, but inhibited lignin deposition at the heading growth stage. On the other hand, ammonium supply resulted in higher concentration of mixed linkage glucans. In addition, the chemical structure of pectins and hemicelluloses was strongly influenced by the form of N. Supply of only NO3- led to alteration in xylan substitution and to lower esterification of homogalacturonan. We conclude that the physiological response to absorption of different inorganic N forms includes pleotropic remodelling of type II cell walls.
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Affiliation(s)
- Sylwia Głazowska
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Laetitia Baldwin
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Jozef Mravec
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Christian Bukh
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - Jonathan U Fangel
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
| | - William Gt Willats
- Department of Plant and Environmental Sciences, University of Copenhagen, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
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29
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de Souza WR, Pacheco TF, Duarte KE, Sampaio BL, de Oliveira Molinari PA, Martins PK, Santiago TR, Formighieri EF, Vinecky F, Ribeiro AP, da Cunha BADB, Kobayashi AK, Mitchell RAC, de Sousa Rodrigues Gambetta D, Molinari HBC. Silencing of a BAHD acyltransferase in sugarcane increases biomass digestibility. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:111. [PMID: 31080518 PMCID: PMC6501328 DOI: 10.1186/s13068-019-1450-7] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Accepted: 04/25/2019] [Indexed: 05/25/2023]
Abstract
BACKGROUND Sugarcane (Saccharum spp.) covers vast areas of land (around 25 million ha worldwide), and its processing is already linked into infrastructure for producing bioethanol in many countries. This makes it an ideal candidate for improving composition of its residues (mostly cell walls), making them more suitable for cellulosic ethanol production. In this paper, we report an approach to improving saccharification of sugarcane straw by RNAi silencing of the recently discovered BAHD01 gene responsible for feruloylation of grass cell walls. RESULTS We identified six BAHD genes in the sugarcane genome (SacBAHDs) and generated five lines with substantially decreased SacBAHD01 expression. To find optimal conditions for determining saccharification of sugarcane straw, we tried multiple combinations of solvent and temperature pretreatment conditions, devising a predictive model for finding their effects on glucose release. Under optimal conditions, demonstrated by Organosolv pretreatment using 30% ethanol for 240 min, transgenic lines showed increases in saccharification efficiency of up to 24%. The three lines with improved saccharification efficiency had lower cell-wall ferulate content but unchanged monosaccharide and lignin compositions. CONCLUSIONS The silencing of SacBAHD01 gene and subsequent decrease of cell-wall ferulate contents indicate a promising novel biotechnological approach for improving the suitability of sugarcane residues for cellulosic ethanol production. In addition, the Organosolv pretreatment of the genetically modified biomass and the optimal conditions for the enzymatic hydrolysis presented here might be incorporated in the sugarcane industry for bioethanol production.
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Affiliation(s)
- Wagner Rodrigo de Souza
- Genetics and Biotechnology Laboratory, Embrapa Agroenergy (CNPAE), Brasília, DF 70770-901 Brazil
- Centre of Natural Sciences and Humanities, Federal University of ABC, São Bernardo do Campo, SP 09606-045 Brazil
| | - Thályta Fraga Pacheco
- Genetics and Biotechnology Laboratory, Embrapa Agroenergy (CNPAE), Brasília, DF 70770-901 Brazil
| | - Karoline Estefani Duarte
- Genetics and Biotechnology Laboratory, Embrapa Agroenergy (CNPAE), Brasília, DF 70770-901 Brazil
| | - Bruno Leite Sampaio
- Genetics and Biotechnology Laboratory, Embrapa Agroenergy (CNPAE), Brasília, DF 70770-901 Brazil
| | | | - Polyana Kelly Martins
- Genetics and Biotechnology Laboratory, Embrapa Agroenergy (CNPAE), Brasília, DF 70770-901 Brazil
| | - Thaís Ribeiro Santiago
- Genetics and Biotechnology Laboratory, Embrapa Agroenergy (CNPAE), Brasília, DF 70770-901 Brazil
| | | | - Felipe Vinecky
- Genetics and Biotechnology Laboratory, Embrapa Agroenergy (CNPAE), Brasília, DF 70770-901 Brazil
| | - Ana Paula Ribeiro
- Genetics and Biotechnology Laboratory, Embrapa Agroenergy (CNPAE), Brasília, DF 70770-901 Brazil
| | | | - Adilson Kenji Kobayashi
- Genetics and Biotechnology Laboratory, Embrapa Agroenergy (CNPAE), Brasília, DF 70770-901 Brazil
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Mohapatra S, Mishra C, Merritt BB, Pattathil S, Thatoi H. Evaluating the Role of Ultrasonication-Assisted Alkali Pretreatment and Enzymatic Hydrolysis on Cellwall Polysaccharides of Pennisetum
Grass Varieties as Potential Biofuel Feedstock. ChemistrySelect 2019. [DOI: 10.1002/slct.201802187] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Sonali Mohapatra
- Department of Biotechnology; College of Engineering and Technology; Biju Pattnaik University of Technology; Bhubaneswar- 751003 India
| | - Chinmaya Mishra
- Department of Biotechnology; College of Engineering and Technology; Biju Pattnaik University of Technology; Bhubaneswar- 751003 India
| | - Brian B Merritt
- Complex Carbohydrate Research Center; University of Georgia, GA 30602 USA and BioEnergy Science Center (BESC); Oak Ridge National Laboratory; Oak Ridge, TN 37831 USA
| | - Sivakumar Pattathil
- Complex Carbohydrate Research Center; University of Georgia, GA 30602 USA and BioEnergy Science Center (BESC); Oak Ridge National Laboratory; Oak Ridge, TN 37831 USA
| | - Hrudayanath Thatoi
- Department of Biotechnology; North Orissa University; Sriram Chandra vihar, Takatpur Baripada- 757003, Odisha India
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Alam A, Zhang R, Liu P, Huang J, Wang Y, Hu Z, Madadi M, Sun D, Hu R, Ragauskas AJ, Tu Y, Peng L. A finalized determinant for complete lignocellulose enzymatic saccharification potential to maximize bioethanol production in bioenergy Miscanthus. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:99. [PMID: 31057665 PMCID: PMC6486690 DOI: 10.1186/s13068-019-1437-4] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 04/13/2019] [Indexed: 05/18/2023]
Abstract
BACKGROUND Miscanthus is a leading bioenergy crop with enormous lignocellulose production potential for biofuels and chemicals. However, lignocellulose recalcitrance leads to biomass process difficulty for an efficient bioethanol production. Hence, it becomes essential to identify the integrative impact of lignocellulose recalcitrant factors on cellulose accessibility for biomass enzymatic hydrolysis. In this study, we analyzed four typical pairs of Miscanthus accessions that showed distinct cell wall compositions and sorted out three major factors that affected biomass saccharification for maximum bioethanol production. RESULTS Among the three optimal (i.e., liquid hot water, H2SO4 and NaOH) pretreatments performed, mild alkali pretreatment (4% NaOH at 50 °C) led to almost complete biomass saccharification when 1% Tween-80 was co-supplied into enzymatic hydrolysis in the desirable Miscanthus accessions. Consequently, the highest bioethanol yields were obtained at 19% (% dry matter) from yeast fermentation, with much higher sugar-ethanol conversion rates by 94-98%, compared to the other Miscanthus species subjected to stronger pretreatments as reported in previous studies. By comparison, three optimized pretreatments distinctively extracted wall polymers and specifically altered polymer features and inter-linkage styles, but the alkali pretreatment caused much increased biomass porosity than that of the other pretreatments. Based on integrative analyses, excellent equations were generated to precisely estimate hexoses and ethanol yields under various pretreatments and a hypothetical model was proposed to outline an integrative impact on biomass saccharification and bioethanol production subjective to a predominate factor (CR stain) of biomass porosity and four additional minor factors (DY stain, cellulose DP, hemicellulose X/A, lignin G-monomer). CONCLUSION Using four pairs of Miscanthus samples with distinct cell wall composition and varied biomass saccharification, this study has determined three main factors of lignocellulose recalcitrance that could be significantly reduced for much-increased biomass porosity upon optimal pretreatments. It has also established a novel standard that should be applicable to judge any types of biomass process technology for high biofuel production in distinct lignocellulose substrates. Hence, this study provides a potential strategy for precise genetic modification of lignocellulose in all bioenergy crops.
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Affiliation(s)
- Aftab Alam
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Ran Zhang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Peng Liu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Jiangfeng Huang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Yanting Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Zhen Hu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Meysam Madadi
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Dan Sun
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- School of Materials and Chemical Engineering, Hubei University of Technology, Wuhan, 430068 China
| | - Ruofei Hu
- College of Food Science and Technology, Hubei University of Arts and Science, Xiangyang, 441053 China
| | - Arthur J. Ragauskas
- Department of Chemical and Biomolecular Engineering, University of Tennessee-Knoxville, Knoxville, TN 37996-2200 USA
| | - Yuanyuan Tu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Liangcai Peng
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
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Huang J, Xia T, Li G, Li X, Li Y, Wang Y, Wang Y, Chen Y, Xie G, Bai FW, Peng L, Wang L. Overproduction of native endo-β-1,4-glucanases leads to largely enhanced biomass saccharification and bioethanol production by specific modification of cellulose features in transgenic rice. BIOTECHNOLOGY FOR BIOFUELS 2019; 12:11. [PMID: 30636971 PMCID: PMC6325865 DOI: 10.1186/s13068-018-1351-1] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Accepted: 12/29/2018] [Indexed: 05/03/2023]
Abstract
BACKGROUND Genetic modification of plant cell walls has been implemented to reduce lignocellulosic recalcitrance for biofuel production. Plant glycoside hydrolase family 9 (GH9) comprises endo-β-1,4-glucanase in plants. Few studies have examined the roles of GH9 in cell wall modification. In this study, we independently overexpressed two genes from GH9B subclasses (OsGH9B1 and OsGH9B3) and examined cell wall features and biomass saccharification in transgenic rice plants. RESULTS Compared with the wild type (WT, Nipponbare), the OsGH9B1 and OsGH9B3 transgenic rice plants, respectively, contained much higher OsGH9B1 and OsGH9B3 protein levels and both proteins were observed in situ with nonspecific distribution in the plant cells. The transgenic lines exhibited significantly increased cellulase activity in vitro than the WT. The OsGH9B1 and OsGH9B3 transgenic plants showed a slight alteration in three wall polymer compositions (cellulose, hemicelluloses, and lignin), in their stem mechanical strength and biomass yield, but were significantly decreased in the cellulose degree of polymerization (DP) and lignocellulose crystalline index (CrI) by 21-22%. Notably, the crude cellulose substrates of the transgenic lines were more efficiently digested by cellobiohydrolase (CBHI) than those of the WT, indicating the significantly increased amounts of reducing ends of β-1,4-glucans in cellulose microfibrils. Finally, the engineered lines generated high sugar yields after mild alkali pretreatments and subsequent enzymatic hydrolysis, resulting in the high bioethanol yields obtained at 22.5% of dry matter. CONCLUSIONS Overproduction of OsGH9B1/B3 enzymes should have specific activity in the postmodification of cellulose microfibrils. The increased reducing ends of β-1,4-glucan chains for reduced cellulose DP and CrI positively affected biomass enzymatic saccharification. Our results demonstrate a potential strategy for genetic modification of cellulose microfibrils in bioenergy crops.
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Affiliation(s)
- Jiangfeng Huang
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
- State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, School of Life Sciences, Inner Mongolia University, Hohhot, 010070 China
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning, 530004 China
| | - Tao Xia
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Guanhua Li
- State Key Laboratory of Reproductive Regulation and Breeding of Grassland Livestock, School of Life Sciences, Inner Mongolia University, Hohhot, 010070 China
| | - Xianliang Li
- College of Bioengineering, Jingchu University of Technology, Jingmen, 448000 China
| | - Ying Li
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Yanting Wang
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Youmei Wang
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Yuanyuan Chen
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Guosheng Xie
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Feng-Wu Bai
- State Key Laboratory of Microbial Metabolism, School of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240 China
| | - Liangcai Peng
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
- State Key Laboratory of Microbial Metabolism, School of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240 China
| | - Lingqiang Wang
- Biomass and Bioenergy Research Centre, College of Plant Science and Technology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
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Mouthier TMB, de Rink B, van Erven G, de Gijsel P, Schols HA, Kabel MA. Low liquid ammonia treatment of wheat straw increased enzymatic cell wall polysaccharide degradability and decreased residual hydroxycinnamic acids. BIORESOURCE TECHNOLOGY 2019; 272:288-299. [PMID: 30366288 DOI: 10.1016/j.biortech.2018.10.025] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Revised: 10/08/2018] [Accepted: 10/10/2018] [Indexed: 06/08/2023]
Abstract
Ammonia treatment of lignocellulose improves carbohydrate degradability, however, low ammonia dose treatment effects and mechanisms are hardly considered. This study describes low dose ammonia treatment of wheat straw in a statistical design of experiments (Taguchi design) to evaluate the effects of ammonia concentration, treatment time and the Solid:Liquid ratio on structure, composition and enzymatic degradability of the residual fractions. The results showed that low ammonia concentration (≤2 w/w % NH3) resulted in a high carbohydrate recovery (>80%) coupled enzymatic hydrolysis of 50% of xylan and 40% of glucan of the treated material using a (hemi-) cellulase enzyme cocktail. This effect coincidences with the relative decrease in ferulic acid by 10% and coumaric acid by more than 50% analysed via pyrolysis-GC-MS, measured as 4-vinyl-phenol and 4-vinyl-guaiacol, respectively. Our findings show that lowering ammonia concentration increased the effect of treatment time on the enzymatic degradability of the residual fraction.
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Affiliation(s)
- Thibaut M B Mouthier
- Wageningen University and Research, Laboratory of Food Chemistry, Bornse Weilanden 9, 6708 WG Wageningen, The Netherlands
| | - Bake de Rink
- Wageningen University and Research, Laboratory of Food Chemistry, Bornse Weilanden 9, 6708 WG Wageningen, The Netherlands
| | - Gijs van Erven
- Wageningen University and Research, Laboratory of Food Chemistry, Bornse Weilanden 9, 6708 WG Wageningen, The Netherlands
| | - Peter de Gijsel
- Wageningen University and Research, Laboratory of Food Chemistry, Bornse Weilanden 9, 6708 WG Wageningen, The Netherlands
| | - Henk A Schols
- Wageningen University and Research, Laboratory of Food Chemistry, Bornse Weilanden 9, 6708 WG Wageningen, The Netherlands
| | - Mirjam A Kabel
- Wageningen University and Research, Laboratory of Food Chemistry, Bornse Weilanden 9, 6708 WG Wageningen, The Netherlands.
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Cheng S, Yu H, Hu M, Wu Y, Cheng L, Cai Q, Tu Y, Xia T, Peng L. Miscanthus accessions distinctively accumulate cadmium for largely enhanced biomass enzymatic saccharification by increasing hemicellulose and pectin and reducing cellulose CrI and DP. BIORESOURCE TECHNOLOGY 2018; 263:67-74. [PMID: 29730520 DOI: 10.1016/j.biortech.2018.04.031] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2018] [Revised: 04/02/2018] [Accepted: 04/07/2018] [Indexed: 05/06/2023]
Abstract
In this study, total eight distinct Miscanthus accessions were collected from the cadmium (Cd)-supplied soil pots, and mild alkali pretreatments (0.5%, 1% NaOH) were then performed to enhance biomass enzymatic saccharification. Due to large Cd accumulation, all Miscanthus accessions showed significantly reduced cellulose levels and features (CrI, DP) with much increased hemicellulose and pectin contents in the mature stems. Under mild alkali pretreatments, all Miscanthus samples exhibited largely increased hexoses yields released from enzymatic hydrolysis, and one desirable accession had an almost complete biomass saccharification with the hexoses yield at 100% (% cellulose). Notably, the biomass residues remained from enzymatic hydrolysis upon 1% NaOH pretreatment could absorb 73-96% Cd (% of total), suggesting an applicable approach for Cd phyto-remediation. Hence, a hypothetic model was proposed to elucidate that the enhanced biomass saccharification should be mainly due to much reduced cellulose CrI and DP in the Cd-accumulated Miscanthus accessions.
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Affiliation(s)
- Shaozhe Cheng
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Hua Yu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Meng Hu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Yue Wu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Liangliang Cheng
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Qiuming Cai
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Yuanyuan Tu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Tao Xia
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; College of Life Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Liangcai Peng
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China; School of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China.
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Neural Network Prediction of Corn Stover Saccharification Based on Its Structural Features. BIOMED RESEARCH INTERNATIONAL 2018; 2018:9167508. [PMID: 30159330 PMCID: PMC6109571 DOI: 10.1155/2018/9167508] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Revised: 04/04/2018] [Accepted: 05/31/2018] [Indexed: 11/18/2022]
Abstract
The classic assay for a large population biomass is time-consuming, labor intensive, and chemically expensive. This paper would find out a rapid assay for predicting biomass digestibility from biomass structural features without hydrolysis. We examined the 62 representative corn stover accessions that displayed a diverse cell-wall composition and varied biomass digestibility. Correlation analysis was firstly to detect effects of cell-wall compositions and wall polymer features on corn stover digestibility. Based on the dependable relationship of structural features and digestibility, a neural networks model has been developed and successfully predicted the corn stover saccharification based on the features without enzymatic hydrolysis. The actual measured and net-simulated predicted corn stover saccharification had good results as mean square error of 1.80E-05, coefficient of determination of 0.942 and average relative deviation of 3.95. The trained networks satisfactorily predicted the saccharification results based on the features of corn stover. Predicting the corn stover saccharification without hydrolysis will reduce capital and operational costs for corn stover purchasing and storage.
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Hu M, Yu H, Li Y, Li A, Cai Q, Liu P, Tu Y, Wang Y, Hu R, Hao B, Peng L, Xia T. Distinct polymer extraction and cellulose DP reduction for complete cellulose hydrolysis under mild chemical pretreatments in sugarcane. Carbohydr Polym 2018; 202:434-443. [PMID: 30287020 DOI: 10.1016/j.carbpol.2018.08.039] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Revised: 07/27/2018] [Accepted: 08/10/2018] [Indexed: 10/28/2022]
Abstract
In this study, liquid hot water (LHW) and chemical (H2SO4, NaOH, CaO) pretreatments were performed in Saccharum species including sugarcane bagasse. In comparison, the LHW and CaO pretreatments significantly enhanced biomass enzymatic hydrolysis, leading to much high bioethanol yield obtained at 19% (% dry matter) with an almost complete hexoses-ethanol conversion in the desirable So5 bagasse sample. Despite the LHW and CaO are distinctive for extracting hemicellulose and lignin, both pretreatments largely reduced cellulose degree of polymerization for enhanced lignocellulose enzymatic saccharification. Further chemical analysis indicated that the pretreated So5 sample had much lower cellulose crystalline index, hemicellulosic Xyl/Ara and lignin S/H ratio than those of other biomass samples, which explained that the So5 had the highest bioethanol yield among Saccharum species. Therefore, a mechanism model was proposed to elucidate how mild pretreatments could enhance biomass enzymatic saccharification for a high bioethanol production in the desirable sugarcane bagasse.
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Affiliation(s)
- Meng Hu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Hua Yu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Yu Li
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; Guangdong Provincial Bioengineering Institute (Guangzhou Sugarcane Industry Research Institute), Guangzhou 510316, China.
| | - Ao Li
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Qiuming Cai
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Peng Liu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Yuanyuan Tu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Yanting Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Ruofei Hu
- College of Food Science and Technology, Hubei University of Arts and Science, Xiangyang City, Hubei Province 441053, China.
| | - Bo Hao
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Liangcai Peng
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
| | - Tao Xia
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
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Hu Z, Zhang G, Muhammad A, Samad RA, Wang Y, Walton JD, He Y, Peng L, Wang L. Genetic loci simultaneously controlling lignin monomers and biomass digestibility of rice straw. Sci Rep 2018; 8:3636. [PMID: 29483532 PMCID: PMC5827516 DOI: 10.1038/s41598-018-21741-y] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2017] [Accepted: 02/07/2018] [Indexed: 12/23/2022] Open
Abstract
Lignin content and composition are crucial factors affecting biomass digestibility. Exploring the genetic loci simultaneously affecting lignin-relevant traits and biomass digestibility is a precondition for lignin genetic manipulation towards energy crop breeding. In this study, a high-throughput platform was employed to assay the lignin content, lignin composition and biomass enzymatic digestibility of a rice recombinant inbred line population. Correlation analysis indicated that the absolute content of lignin monomers rather than lignin content had negative effects on biomass saccharification, whereas the relative content of p-hydroxyphenyl unit and the molar ratio of p-hydroxyphenyl unit to guaiacyl unit exhibited positive roles. Eight QTL clusters were identified and four of them affecting both lignin composition and biomass digestibility. The additive effects of clustered QTL revealed consistent relationships between lignin-relevant traits and biomass digestibility. Pyramiding rice lines containing the above four positive alleles for increasing biomass digestibility were selected and showed comparable lignin content, decreased syringyl or guaiacyl unit and increased molar percentage of p-hydroxyphenyl unit, the molar ratio of p-hydroxyphenyl unit to guaiacyl unit and sugar releases. More importantly, the lodging resistance and eating/cooking quality of pyramiding lines were not sacrificed, indicating the QTL information could be applied to select desirable energy rice lines.
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Affiliation(s)
- Zhen Hu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Guifen Zhang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Ali Muhammad
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Rana Abdul Samad
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Youmei Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Jonathan D Walton
- Department of Energy Plant Research Laboratory and DOE Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, 48824, USA
| | - Yuqing He
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Liangcai Peng
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Lingqiang Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China.
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China.
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.
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Zhang K, Si M, Liu D, Zhuo S, Liu M, Liu H, Yan X, Shi Y. A bionic system with Fenton reaction and bacteria as a model for bioprocessing lignocellulosic biomass. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:31. [PMID: 29445420 PMCID: PMC5803899 DOI: 10.1186/s13068-018-1035-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Accepted: 01/27/2018] [Indexed: 05/25/2023]
Abstract
BACKGROUND The recalcitrance of lignocellulosic biomass offers a series of challenges for biochemical processing into biofuels and bio-products. For the first time, we address these challenges with a biomimetic system via a mild yet rapid Fenton reaction and lignocellulose-degrading bacterial strain Cupriavidus basilensis B-8 (here after B-8) to pretreat the rice straw (RS) by mimicking the natural fungal invasion process. Here, we also elaborated the mechanism through conducting a systematic study of physicochemical changes before and after pretreatment. RESULTS After synergistic Fenton and B-8 pretreatment, the reducing sugar yield was increased by 15.6-56.6% over Fenton pretreatment alone and 2.7-5.2 times over untreated RS (98 mg g-1). Morphological analysis revealed that pretreatment changed the surface morphology of the RS, and the increase in roughness and hydrophilic sites enhanced lignocellulose bioavailability. Chemical components analyses showed that B-8 removed part of the lignin and hemicellulose which caused the cellulose content to increase. In addition, the important chemical modifications also occurred in lignin, 2D NMR analysis of the lignin in residues indicated that the Fenton pretreatment caused partial depolymerization of lignin mainly by cleaving the β-O-4 linkages and by demethoxylation to remove the syringyl (S) and guaiacyl (G) units. B-8 could depolymerize amount of the G units by cleaving the β-5 linkages that interconnect the lignin subunits. CONCLUSIONS A biomimetic system with a biochemical Fenton reaction and lignocellulose-degrading bacteria was confirmed to be able for the pretreatment of RS to enhance enzymatic hydrolysis under mild conditions. The high digestibility was attributed to the destruction of the lignin structure, partial hydrolysis of the hemicellulose and partial surface oxidation of the cellulose. The mechanism of synergistic Fenton and B-8 pretreatment was also explored to understand the change in the RS and the bacterial effects on enzymatic hydrolysis. Furthermore, this biomimetic system offers new insights into the pretreatment of lignocellulosic biomass.
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Affiliation(s)
- Kejing Zhang
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Mengying Si
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Dan Liu
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Shengnan Zhuo
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Mingren Liu
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Hui Liu
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Xu Yan
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Yan Shi
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
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Fan C, Li Y, Hu Z, Hu H, Wang G, Li A, Wang Y, Tu Y, Xia T, Peng L, Feng S. Ectopic expression of a novel OsExtensin-like gene consistently enhances plant lodging resistance by regulating cell elongation and cell wall thickening in rice. PLANT BIOTECHNOLOGY JOURNAL 2018; 16:254-263. [PMID: 28574641 PMCID: PMC5785348 DOI: 10.1111/pbi.12766] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2017] [Revised: 03/30/2017] [Accepted: 05/29/2017] [Indexed: 05/17/2023]
Abstract
Plant lodging resistance is an important integrative agronomic trait of grain yield and quality in crops. Although extensin proteins are tightly associated with plant cell growth and cell wall construction, little has yet been reported about their impacts on plant lodging resistance. In this study, we isolated a novel extensin-like (OsEXTL) gene in rice, and selected transgenic rice plants that expressed OsEXTL under driven with two distinct promoters. Despite different OsEXTL expression levels, two-promoter-driven OsEXTL-transgenic plants, compared to a rice cultivar and an empty vector, exhibited significantly reduced cell elongation in stem internodes, leading to relatively shorter plant heights by 7%-10%. Meanwhile, the OsEXTL-transgenic plants showed remarkably thickened secondary cell walls with higher cellulose levels in the mature plants, resulting in significantly increased detectable mechanical strength (extension and pushing forces) in the mature transgenic plants. Due to reduced plant height and increased plant mechanical strength, the OsEXTL-transgenic plants were detected with largely enhanced lodging resistances in 3 years field experiments, compared to those of the rice cultivar ZH11. In addition, despite relatively short plant heights, the OsEXTL-transgenic plants maintain normal grain yields and biomass production, owing to their increased cellulose levels and thickened cell walls. Hence, this study demonstrates a largely improved lodging resistance in the OsEXTL-transgenic rice plants, and provides insights into novel extensin functions in plant cell growth and development, cell wall network construction and wall structural remodelling.
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Affiliation(s)
- Chunfen Fan
- Biomass and Bioenergy Research CentreHuazhong Agricultural UniversityWuhanChina
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Ying Li
- Biomass and Bioenergy Research CentreHuazhong Agricultural UniversityWuhanChina
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Zhen Hu
- Biomass and Bioenergy Research CentreHuazhong Agricultural UniversityWuhanChina
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Huizhen Hu
- Biomass and Bioenergy Research CentreHuazhong Agricultural UniversityWuhanChina
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Guangya Wang
- Biomass and Bioenergy Research CentreHuazhong Agricultural UniversityWuhanChina
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Ao Li
- Biomass and Bioenergy Research CentreHuazhong Agricultural UniversityWuhanChina
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Youmei Wang
- Biomass and Bioenergy Research CentreHuazhong Agricultural UniversityWuhanChina
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Yuanyuan Tu
- Biomass and Bioenergy Research CentreHuazhong Agricultural UniversityWuhanChina
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Tao Xia
- Biomass and Bioenergy Research CentreHuazhong Agricultural UniversityWuhanChina
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
- College of Life Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Liangcai Peng
- Biomass and Bioenergy Research CentreHuazhong Agricultural UniversityWuhanChina
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
| | - Shengqiu Feng
- Biomass and Bioenergy Research CentreHuazhong Agricultural UniversityWuhanChina
- National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
- College of Plant Science and TechnologyHuazhong Agricultural UniversityWuhanChina
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Zhao C, Fan X, Hou X, Zhu Y, Yue Y, Wu J. Extended light exposure increases stem digestibility and biomass production of switchgrass. PLoS One 2017; 12:e0188349. [PMID: 29166649 PMCID: PMC5699803 DOI: 10.1371/journal.pone.0188349] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2017] [Accepted: 11/06/2017] [Indexed: 11/18/2022] Open
Abstract
Switchgrass is a photoperiod-sensitive energy grass suitable for growing in the marginal lands of China. We explored the effects of extended photoperiods of low-irradiance light (7 μmol·m-2·s-1, no effective photosynthesis) on the growth, the biomass dry weight, the biomass allocation, and, especially, the stem digestibility and cell wall characteristics of switchgrass. Two extended photoperiods (i.e., 18 and 24 h) were applied over Alamo. Extended light exposure (18 and 24 h) resulted in delayed heading and higher dry weights of vegetative organs (by 32.87 and 35.94%, respectively) at the expense of reducing the amount of sexual organs (by 40.05 and 50.87%, respectively). Compared to the control group (i.e., natural photoperiod), the yield of hexoses (% dry matter) in the stems after a direct enzymatic hydrolysis (DEH) treatment significantly increased (by 44.02 and 46.10%) for those groups irradiated during 18 and 24 h, respectively. Moreover, the yield of hexoses obtained via enzymatic hydrolysis increased after both basic (1% NaOH) and acid (1% H2SO4) pretreatments for the groups irradiated during 18 and 24 h. Additionally, low-irradiance light extension (LILE) significantly increased the content of non-structural carbohydrates (NSCs) while notably reducing the lignin content and the syringyl to guaiacyl (S/G) ratio. These structural changes were in part responsible for the observed improved stem digestibility. Remarkably, LILE significantly decreased the cellulose crystallinity index (CrI) of switchgrass by significantly increasing both the arabinose substitution degree in xylan and the content of ammonium oxalate-extractable uronic acids, both favoring cellulose digestibility. Despite this LILE technology is not applied to the cultivation of switchgrass on a large scale yet, we believe that the present work is important in that it reveals important relationships between extended day length irradiations and biomass production and quality. Additionally, this study paves the way for improving biomass production and digestibility via genetic modification of day length sensitive transcription factors or key structural genes in switchgrass leaves.
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Affiliation(s)
- Chunqiao Zhao
- Research & Development Center for Grass and Environment, Beijing Academy of Agricultural and Forestry Sciences, Beijing, P. R. China
- Key Laboratory of Urban Agriculture (North), Ministry of Agriculture, Beijing, P. R. China
| | - Xifeng Fan
- Research & Development Center for Grass and Environment, Beijing Academy of Agricultural and Forestry Sciences, Beijing, P. R. China
- Key Laboratory of Urban Agriculture (North), Ministry of Agriculture, Beijing, P. R. China
| | - Xincun Hou
- Research & Development Center for Grass and Environment, Beijing Academy of Agricultural and Forestry Sciences, Beijing, P. R. China
- Key Laboratory of Urban Agriculture (North), Ministry of Agriculture, Beijing, P. R. China
| | - Yi Zhu
- Research & Development Center for Grass and Environment, Beijing Academy of Agricultural and Forestry Sciences, Beijing, P. R. China
- Key Laboratory of Urban Agriculture (North), Ministry of Agriculture, Beijing, P. R. China
| | - Yuesen Yue
- Research & Development Center for Grass and Environment, Beijing Academy of Agricultural and Forestry Sciences, Beijing, P. R. China
- Key Laboratory of Urban Agriculture (North), Ministry of Agriculture, Beijing, P. R. China
| | - Juying Wu
- Research & Development Center for Grass and Environment, Beijing Academy of Agricultural and Forestry Sciences, Beijing, P. R. China
- Key Laboratory of Urban Agriculture (North), Ministry of Agriculture, Beijing, P. R. China
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Sun D, Li Y, Wang J, Tu Y, Wang Y, Hu Z, Zhou S, Wang L, Xie G, Huang J, Alam A, Peng L. Biomass saccharification is largely enhanced by altering wall polymer features and reducing silicon accumulation in rice cultivars harvested from nitrogen fertilizer supply. BIORESOURCE TECHNOLOGY 2017; 243:957-965. [PMID: 28738551 DOI: 10.1016/j.biortech.2017.07.057] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Revised: 07/09/2017] [Accepted: 07/10/2017] [Indexed: 05/11/2023]
Abstract
In this study, two rice cultivars were collected from experimental fields with seven nitrogen fertilizer treatments. All biomass samples contained significantly increased cellulose contents and reduced silica levels, with variable amounts of hemicellulose and lignin from different nitrogen treatments. Under chemical (NaOH, CaO, H2SO4) and physical (hot water) pretreatments, biomass samples exhibited much enhanced hexoses yields from enzymatic hydrolysis, with high bioethanol production from yeast fermentation. Notably, both degree of polymerization (DP) of cellulose and xylose/arabinose (Xyl/Ara) ratio of hemicellulose were reduced in biomass residues, whereas other wall polymer features (cellulose crystallinity and monolignol proportion) were variable. Integrative analysis indicated that cellulose DP, hemicellulosic Xyl/Ara and silica are the major factors that significantly affect cellulose crystallinity and biomass saccharification. Hence, this study has demonstrated that nitrogen fertilizer supply could largely enhance biomass saccharification in rice cultivars, mainly by reducing cellulose DP, hemicellulosic Xyl/Ara and silica in cell walls.
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Affiliation(s)
- Dan Sun
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China; School of Materials and Chemical Engineering, Hubei University of Technology, Wuhan, Hubei, China
| | - Ying Li
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Jing Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China; MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, Wuhan, China
| | - Yuanyuan Tu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Yanting Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Zhen Hu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Shiguang Zhou
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Lingqiang Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Guosheng Xie
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Jianliang Huang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Aftab Alam
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China
| | - Liangcai Peng
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China; College of Plant Sciences and Technology, Huazhong Agricultural University, Wuhan, China. http://bbrc.hzau.edu.cn
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Tu Y, Wang L, Xia T, Sun D, Zhou S, Wang Y, Li Y, Zhang H, Zhang T, Madadi M, Peng L. Mild chemical pretreatments are sufficient for complete saccharification of steam-exploded residues and high ethanol production in desirable wheat accessions. BIORESOURCE TECHNOLOGY 2017; 243:319-326. [PMID: 28683384 DOI: 10.1016/j.biortech.2017.06.111] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2017] [Revised: 06/19/2017] [Accepted: 06/20/2017] [Indexed: 05/05/2023]
Abstract
In this study, a combined pretreatment was performed in four wheat accessions using steam explosion followed with different concentrations of H2SO4 or NaOH, leading to increased hexoses yields by 3-6 folds from enzymatic hydrolysis. Further co-supplied with 1% Tween-80, Talq90 and Talq16 accessions exhibited an almost complete enzymatic saccharification of steam-exploded (SE) residues after 0.5% H2SO4 or 1% NaOH pretreatment, with the highest bioethanol yields at 18.5%-19.4%, compared with previous reports about wheat bioethanol yields at 11%-17% obtained under relatively strong pretreatment conditions. Furthermore, chemical analysis indicated that much enhanced saccharification in Talq90 and Talq16 may be partially due to their relatively low cellulose CrI and DP values and high hemicellulose Ara and H-monomer levels in raw materials and SE residues. Hence, this study has not only demonstrated a mild pretreatment technology for a complete saccharification, but it has also obtained the high ethanol production in desirable wheat accessions.
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Affiliation(s)
- Yuanyuan Tu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Lingqiang Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Tao Xia
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Dan Sun
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; School of Materials and Chemical Engineering, Hubei University of Technology, Wuhan 430068, China
| | - Shiguang Zhou
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Yanting Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Ying Li
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Heping Zhang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Tong Zhang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Meysam Madadi
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Liangcai Peng
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
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Sun D, Alam A, Tu Y, Zhou S, Wang Y, Xia T, Huang J, Li Y, Wei X, Hao B, Peng L. Steam-exploded biomass saccharification is predominately affected by lignocellulose porosity and largely enhanced by Tween-80 in Miscanthus. BIORESOURCE TECHNOLOGY 2017; 239:74-81. [PMID: 28500891 DOI: 10.1016/j.biortech.2017.04.114] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2017] [Revised: 04/26/2017] [Accepted: 04/27/2017] [Indexed: 05/11/2023]
Abstract
In this study, total ten Miscanthus accessions exhibited diverse cell wall compositions, leading to largely varied hexoses yields at 17%-40% (% cellulose) released from direct enzymatic hydrolysis of steam-exploded (SE) residues. Further supplied with 2% Tween-80 into the enzymatic digestion, the Mis7 accession showed the higher hexose yield by 14.8-fold than that of raw material, whereas the Mis10 had the highest hexoses yield at 77% among ten Miscanthus accessions. Significantly, this study identified four wall polymer features that negatively affect biomass saccharification as p<0.05 or 0.01 in the SE residues, including cellulose DP, Xyl and Ara of hemicellulose, and S-monomer of lignin. Based on Simons' stain, the SE porosity (defined by DY/DB) was examined to be the unique positive factor on biomass enzymatic digestion. Hence, this study provides the potential strategy to enhance biomass saccharification using optimal biomass process technology and related genetic breeding in Miscanthus and beyond.
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Affiliation(s)
- Dan Sun
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China; School of Materials and Chemical Engineering, Hubei University of Technology, Wuhan 430068, China
| | - Aftab Alam
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Yuanyuan Tu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Shiguang Zhou
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Yanting Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Tao Xia
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Jiangfeng Huang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Ying Li
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Xiaoyang Wei
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Bo Hao
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Liangcai Peng
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan 430070, China; National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.
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Bai Y, Wu D, Liu F, Li Y, Chen P, Lu M, Zheng B. Characterization and Functional Analysis of the Poplar Pectate Lyase-Like Gene PtPL1-18 Reveal Its Role in the Development of Vascular Tissues. FRONTIERS IN PLANT SCIENCE 2017; 8:1123. [PMID: 28702042 PMCID: PMC5487484 DOI: 10.3389/fpls.2017.01123] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Accepted: 06/12/2017] [Indexed: 05/04/2023]
Abstract
Pectin is a major component of plant cell walls, and the structure of pectin impacts on the properties of wood. Although we know that pectate lyase (PL, EC 4.2.2.2) has a major influence on the structure of pectin, our knowledge of Pectate lyase-like genes (PLL) in tree species remains limited. To better understand the characteristics of PLL genes in trees and to identify novel PLL genes that are potentially involved in the development of wood, we performed comprehensive analyses of gene structures, phylogenetic relationships, chromosomal locations, gene duplication events, conserved protein motifs, and gene expression patterns of 30 PLLs in Populus trichocarpa (PtPL1s). We performed an in silico gene expression profiling and quantitative real-time PCR analysis and found that most of the PtPL1 genes from subgroups Ia and Ib were highly expressed in xylem. PtPL1-18 from subgroup Ia was preferentially expressed in developing primary xylem and in xylem cells that were developing secondary walls. Overexpression of PtPL1-18 in poplar reduced plant growth and xylem development. Reduced secondary cell wall thickening and irregular xylem cells were observed in the transgenic trees, probably due to their lower pectin content. Although pectin is not a major component of plant secondary cell walls, our results are consistent with the PtPL1 genes performing important functions during wood formation.
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Affiliation(s)
- Yun Bai
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China
| | - Dan Wu
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China
| | - Fei Liu
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, College of Plant Science and Technology, Huazhong Agricultural UniversityWuhan, China
| | - Yuyang Li
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, College of Plant Science and Technology, Huazhong Agricultural UniversityWuhan, China
| | - Peng Chen
- National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, College of Plant Science and Technology, Huazhong Agricultural UniversityWuhan, China
| | - Mengzhu Lu
- State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of ForestryBeijing, China
| | - Bo Zheng
- Key Laboratory of Horticultural Plant Biology of Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural UniversityWuhan, China
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PtoMYB156 is involved in negative regulation of phenylpropanoid metabolism and secondary cell wall biosynthesis during wood formation in poplar. Sci Rep 2017; 7:41209. [PMID: 28117379 PMCID: PMC5259741 DOI: 10.1038/srep41209] [Citation(s) in RCA: 54] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2016] [Accepted: 12/16/2016] [Indexed: 01/18/2023] Open
Abstract
Some R2R3 MYB transcription factors have been shown to be major regulators of phenylpropanoid biosynthetic pathway and impact secondary wall formation in plants. In this study, we describe the functional characterization of PtoMYB156, encoding a R2R3-MYB transcription factor, from Populus tomentosa. Expression pattern analysis showed that PtoMYB156 is widely expressed in all tissues examined, but predominantly in leaves and developing wood cells. PtoMYB156 localized to the nucleus and acted as a transcriptional repressor. Overexpression of PtoMYB156 in poplar repressed phenylpropanoid biosynthetic genes, leading to a reduction in the amounts of total phenolic and flavonoid compounds. Transgenic plants overexpressing PtoMYB156 also displayed a dramatic decrease in secondary wall thicknesses of xylem fibers and the content of cellulose, lignin and xylose compared with wild-type plants. Transcript accumulation of secondary wall biosynthetic genes was down-regulated by PtoMYB156 overexpression. Transcriptional activation assays revealed that PtoMYB156 was able to repress the promoter activities of poplar CESA17, C4H2 and GT43B. By contrast, knockout of PtoMYB156 by CRISPR/Cas9 in poplar resulted in ectopic deposition of lignin, xylan and cellulose during secondary cell wall formation. Taken together, these results show that PtoMYB156 may repress phenylpropanoid biosynthesis and negatively regulate secondary cell wall formation in poplar.
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Tao Z, Huang Y, Zhang L, Wang X, Liu G, Wang H. BnLATE, a Cys2/His2-Type Zinc-Finger Protein, Enhances Silique Shattering Resistance by Negatively Regulating Lignin Accumulation in the Silique Walls of Brassica napus. PLoS One 2017; 12:e0168046. [PMID: 28081140 PMCID: PMC5231383 DOI: 10.1371/journal.pone.0168046] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2016] [Accepted: 11/25/2016] [Indexed: 11/18/2022] Open
Abstract
Silique shattering resistance is one of the most important agricultural traits in oil crop breeding. Seed shedding from siliques prior to and during harvest causes devastating losses in oilseed yield. Lignin biosynthesis in the silique walls is thought to affect silique-shattering resistance in oil crops. Here, we identified and characterized B. napus LATE FLOWERING (BnLATE), which encodes a Cys2/His2-type zinc-finger protein. Heterologous expression of BnLATE under the double enhanced CaMV 35S promoter (D35S) in wild-type Arabidopsis plants resulted in a marked decrease in lignification in the replum, valve layer (carpel) and dehiscence zone. pBnLATE::GUS activity was strong in the yellowing silique walls of transgenic lines. Furthermore, the expression pattern of BnLATE and the lignin content gradient in the silique walls at 48 days after pollination (DAP) of 73290, a B. napus silique shattering-resistant line, are similar to those in transgenic Arabidopsis lines expressing BnLATE. Transcriptome sequencing of the silique walls revealed that genes encoding peroxidases, which polymerize monolignols and lignin in the phenylpropanoid pathway, were down-regulated at least two-fold change in the D35S::BnLATE transgenic lines. pBnLATE::BnLATE transgenic lines were further used to identify the function of BnLATE, and the results showed that lignification in the carpel and dehiscence zone of yellowing silique also remarkably decreased compared with the wild-type control, the silique shattering-resistance and expression pattern of peroxidase genes are very similar to results with D35S::BnLATE. These results suggest that BnLATE is a negative regulator of lignin biosynthesis in the yellowing silique walls, and promotes silique-shattering resistance in B. napus through restraining the polymerization of monolignols and lignin.
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Affiliation(s)
- Zhangsheng Tao
- Oil Crops Research Institute, Chinese Academy of Agricultural Sciences; Key Laboratory of Oil Crop Biology and Genetic Improvement, Ministry of Agriculture; Wuhan, Hubei, China
| | - Yi Huang
- Oil Crops Research Institute, Chinese Academy of Agricultural Sciences; Key Laboratory of Oil Crop Biology and Genetic Improvement, Ministry of Agriculture; Wuhan, Hubei, China
| | - Lida Zhang
- Plant Biotechnology Research Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China
| | - Xinfa Wang
- Oil Crops Research Institute, Chinese Academy of Agricultural Sciences; Key Laboratory of Oil Crop Biology and Genetic Improvement, Ministry of Agriculture; Wuhan, Hubei, China
| | - Guihua Liu
- Oil Crops Research Institute, Chinese Academy of Agricultural Sciences; Key Laboratory of Oil Crop Biology and Genetic Improvement, Ministry of Agriculture; Wuhan, Hubei, China
| | - Hanzhong Wang
- Oil Crops Research Institute, Chinese Academy of Agricultural Sciences; Key Laboratory of Oil Crop Biology and Genetic Improvement, Ministry of Agriculture; Wuhan, Hubei, China
- * E-mail:
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Fan C, Feng S, Huang J, Wang Y, Wu L, Li X, Wang L, Tu Y, Xia T, Li J, Cai X, Peng L. AtCesA8-driven OsSUS3 expression leads to largely enhanced biomass saccharification and lodging resistance by distinctively altering lignocellulose features in rice. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:221. [PMID: 28932262 PMCID: PMC5603028 DOI: 10.1186/s13068-017-0911-0] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2017] [Accepted: 09/08/2017] [Indexed: 05/03/2023]
Abstract
BACKGROUND Biomass recalcitrance and plant lodging are two complex traits that tightly associate with plant cell wall structure and features. Although genetic modification of plant cell walls can potentially reduce recalcitrance for enhancing biomass saccharification, it remains a challenge to maintain a normal growth with enhanced biomass yield and lodging resistance in transgenic plants. Sucrose synthase (SUS) is a key enzyme to regulate carbon partitioning by providing UDP-glucose as substrate for cellulose and other polysaccharide biosynthesis. Although SUS transgenic plants have reportedly exhibited improvement on the cellulose and starch based traits, little is yet reported about SUS impacts on both biomass saccharification and lodging resistance. In this study, we selected the transgenic rice plants that expressed OsSUS3 genes when driven by the AtCesA8 promoter specific for promoting secondary cell wall cellulose synthesis in Arabidopsis. We examined biomass saccharification and lodging resistance in the transgenic plants and detected their cell wall structures and wall polymer features. RESULTS During two-year field experiments, the selected AtCesA8::SUS3 transgenic plants maintained a normal growth with slightly increased biomass yields. The four independent transgenic lines exhibited much higher biomass enzymatic saccharification and bioethanol production under chemical pretreatments at P < 0.01 levels, compared with the controls of rice cultivar and empty vector transgenic line. Notably, all transgenic lines showed a consistently enhanced lodging resistance with the increasing extension and pushing forces. Correlation analysis suggested that the reduced cellulose crystallinity was a major factor for largely enhanced biomass saccharification and lodging resistance in transgenic rice plants. In addition, the cell wall thickenings with the increased cellulose and hemicelluloses levels should also contribute to plant lodging resistance. Hence, this study has proposed a mechanistic model that shows how OsSUS3 regulates cellulose and hemicelluloses biosyntheses resulting in reduced cellulose crystallinity and increased wall thickness, thereby leading to large improvements of both biomass saccharification and lodging resistance in transgenic rice plants. CONCLUSIONS This study has demonstrated that the AtCesA8::SUS3 transgenic rice plants exhibited largely improved biomass saccharification and lodging resistance by reducing cellulose crystallinity and increasing cell wall thickness. It also suggests a powerful genetic approach for cell wall modification in bioenergy crops.
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Affiliation(s)
- Chunfen Fan
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Shengqiu Feng
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Jiangfeng Huang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Yanting Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Leiming Wu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Xukai Li
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Lingqiang Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Yuanyuan Tu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Tao Xia
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan, China
| | - Jingyang Li
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
- HaiKou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, 570102 China
| | - Xiwen Cai
- Department of Plant Science, North Dakota State University, Fargo, ND USA
| | - Liangcai Peng
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China
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Huang J, Li Y, Wang Y, Chen Y, Liu M, Wang Y, Zhang R, Zhou S, Li J, Tu Y, Hao B, Peng L, Xia T. A precise and consistent assay for major wall polymer features that distinctively determine biomass saccharification in transgenic rice by near-infrared spectroscopy. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:294. [PMID: 29234462 PMCID: PMC5719720 DOI: 10.1186/s13068-017-0983-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2017] [Accepted: 11/26/2017] [Indexed: 05/03/2023]
Abstract
BACKGROUND The genetic modification of plant cell walls has been considered to reduce lignocellulose recalcitrance in bioenergy crops. As a result, it is important to develop a precise and rapid assay for the major wall polymer features that affect biomass saccharification in a large population of transgenic plants. In this study, we collected a total of 246 transgenic rice plants that, respectively, over-expressed and RNAi silenced 12 genes of the OsGH9 and OsGH10 family that are closely associated with cellulose and hemicellulose modification. We examined the wall polymer features and biomass saccharification among 246 transgenic plants and one wild-type plant. The samples presented a normal distribution applicable for statistical analysis and NIRS modeling. RESULTS Among the 246 transgenic rice plants, we determined largely varied wall polymer features and the biomass enzymatic saccharification after alkali pretreatment in rice straws, particularly for the fermentable hexoses, ranging from 52.8 to 95.9%. Correlation analysis indicated that crystalline cellulose and lignin levels negatively affected the hexose and total sugar yields released from pretreatment and enzymatic hydrolysis in the transgenic rice plants, whereas the arabinose levels and arabinose substitution degree (reverse xylose/arabinose ratio) exhibited positive impacts on the hexose and total sugars yields. Notably, near-infrared spectroscopy (NIRS) was applied to obtain ten equations for predicting biomass enzymatic saccharification and seven equations for distinguishing major wall polymer features. Most of the equations exhibited high R2/R2cv/R2ev and RPD values for a perfect prediction capacity. CONCLUSIONS Due to large generated populations of transgenic rice lines, this study has not only examined the key wall polymer features that distinctively affect biomass enzymatic saccharification in rice but has also established optimal NIRS models for a rapid and precise screening of major wall polymer features and lignocellulose saccharification in biomass samples. Importantly, this study has briefly explored the potential roles of a total of 12 OsGH9 and OsGH10 genes in cellulose and hemicellulose modification and cell wall remodeling in transgenic rice lines. Hence, it provides a strategy for genetic modification of plant cell walls by expressing the desired OsGH9 and OsGH10 genes that could greatly improve biomass enzymatic digestibility in rice.
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Affiliation(s)
- Jiangfeng Huang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Ying Li
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Yanting Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Yuanyuan Chen
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Mingyong Liu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Youmei Wang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Ran Zhang
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Shiguang Zhou
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Jingyang Li
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
- Haikou Experimental Station, Chinese Academy of Tropical Agricultural Sciences, Haikou, 570102 China
| | - Yuanyuan Tu
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Bo Hao
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Liangcai Peng
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
| | - Tao Xia
- Biomass and Bioenergy Research Centre, Huazhong Agricultural University, Wuhan, 430070 China
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070 China
- College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070 China
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Li M, Pu Y, Ragauskas AJ. Current Understanding of the Correlation of Lignin Structure with Biomass Recalcitrance. Front Chem 2016; 4:45. [PMID: 27917379 PMCID: PMC5114238 DOI: 10.3389/fchem.2016.00045] [Citation(s) in RCA: 144] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2016] [Accepted: 11/02/2016] [Indexed: 12/22/2022] Open
Abstract
Lignin, a complex aromatic polymer in terrestrial plants, contributes significantly to biomass recalcitrance to microbial and/or enzymatic deconstruction. To reduce biomass recalcitrance, substantial endeavors have been exerted on pretreatment and lignin engineering in the past few decades. Lignin removal and/or alteration of lignin structure have been shown to result in reduced biomass recalcitrance with improved cell wall digestibility. While high lignin content is usually a barrier to a cost-efficient application of bioresources to biofuels, the direct correlation of lignin structure and its concomitant properties with biomass remains unclear due to the complexity of cell wall and lignin structure. Advancement in application of biorefinery to production of biofuels, chemicals, and bio-derived materials necessitates a fundamental understanding of the relationship of lignin structure and biomass recalcitrance. In this mini-review, we focus on recent investigations on the influence of lignin chemical properties on bioprocessability-pretreatment and enzymatic hydrolysis of biomass. Specifically, lignin-enzyme interactions and the effects of lignin compositional units, hydroxycinnamates, and lignin functional groups on biomass recalcitrance have been highlighted, which will be useful not only in addressing biomass recalcitrance but also in deploying renewable lignocelluloses efficiently.
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Affiliation(s)
- Mi Li
- BioEnergy Science Center, Biosciences Division, Joint Institute of Biological Science, Oak Ridge National Laboratory Oak Ridge, TN, USA
| | - Yunqiao Pu
- BioEnergy Science Center, Biosciences Division, Joint Institute of Biological Science, Oak Ridge National Laboratory Oak Ridge, TN, USA
| | - Arthur J Ragauskas
- BioEnergy Science Center, Biosciences Division, Joint Institute of Biological Science, Oak Ridge National LaboratoryOak Ridge, TN, USA; Department of Chemical and Bimolecular Engineering, University of Tennessee KnoxvilleKnoxville, TN, USA; Department of Forestry, Wildlife, and Fisheries, Center for Renewable Carbon, University Tennessee Institute of AgricultureKnoxville, TN, USA
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