51
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Zhang L, Zhang X, Yao Z, Jiang S, Deng J, Li B, Yu Z. Discovery of Fluorogenic Diarylsydnone-Alkene Photoligation: Conversion of ortho-Dual-Twisted Diarylsydnones into Planar Pyrazolines. J Am Chem Soc 2018; 140:7390-7394. [DOI: 10.1021/jacs.8b02493] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Linmeng Zhang
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
| | - Xiaocui Zhang
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
| | - Zhuojun Yao
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
| | - Shichao Jiang
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
| | - Jiajie Deng
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
| | - Bo Li
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
| | - Zhipeng Yu
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu 610064, People’s Republic of China
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52
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An P, Lewandowski TM, Erbay TG, Liu P, Lin Q. Sterically Shielded, Stabilized Nitrile Imine for Rapid Bioorthogonal Protein Labeling in Live Cells. J Am Chem Soc 2018; 140:4860-4868. [PMID: 29565582 DOI: 10.1021/jacs.8b00126] [Citation(s) in RCA: 84] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
In pursuit of fast bioorthogonal reactions, reactive moieties have been increasingly employed for selective labeling of biomolecules in living systems, posing a challenge in attaining reactivity without sacrificing selectivity. To address this challenge, here we report a bioinspired strategy in which molecular shape controls the selectivity of a transient, highly reactive nitrile imine dipole. By tuning the shape of structural pendants attached to the ortho position of the N-aryl ring of diaryltetrazoles-precursors of nitrile imines, we discovered a sterically shielded nitrile imine that favors the 1,3-dipolar cycloaddition over the competing nucleophilic addition. The photogenerated nitrile imine exhibits an extraordinarily long half-life of 102 s in aqueous medium, owing to its unique molecular shape that hinders the approach of a nucleophile as shown by DFT calculations. The utility of this sterically shielded nitrile imine in rapid (∼1 min) bioorthogonal labeling of glucagon receptor in live mammalian cells was demonstrated.
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Affiliation(s)
- Peng An
- Department of Chemistry , State University of New York at Buffalo , Buffalo , New York 14260-3000 , United States
| | - Tracey M Lewandowski
- Department of Chemistry , State University of New York at Buffalo , Buffalo , New York 14260-3000 , United States
| | - Tuğçe G Erbay
- Department of Chemistry , University of Pittsburgh , Pittsburgh , Pennsylvania 15260 , United States
| | - Peng Liu
- Department of Chemistry , University of Pittsburgh , Pittsburgh , Pennsylvania 15260 , United States
| | - Qing Lin
- Department of Chemistry , State University of New York at Buffalo , Buffalo , New York 14260-3000 , United States
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53
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Buten C, Lamping S, Körsgen M, Arlinghaus HF, Jamieson C, Ravoo BJ. Surface Functionalization with Carboxylic Acids by Photochemical Microcontact Printing and Tetrazole Chemistry. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018; 34:2132-2138. [PMID: 29334733 DOI: 10.1021/acs.langmuir.7b03678] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
In this paper, we show that carboxylic acid-functionalized molecules can be patterned by photochemical microcontact printing on tetrazole-terminated self-assembled monolayers. Upon irradiation, tetrazoles eliminate nitrogen to form highly reactive nitrile imines, which can be ligated with several different nucleophiles, carboxylic acids being the most reactive. As a proof of concept, we immobilized trifluoroacetic acid to monitor the reaction with X-ray photoelectron spectroscopy. Moreover, we also immobilized peptides and fabricated carbohydrate-lectin as well as biotin-streptavidin microarrays using this method. Surface-patterning was demonstrated by fluorescence microscopy and time-of-flight secondary ion mass spectrometry.
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Affiliation(s)
- Christoph Buten
- Organic-Chemistry Institute and Center for Soft Nanoscience, Westfälische Wilhelms-Universität Münster , Corrensstraße 40, 48149 Münster, Germany
| | - Sebastian Lamping
- Organic-Chemistry Institute and Center for Soft Nanoscience, Westfälische Wilhelms-Universität Münster , Corrensstraße 40, 48149 Münster, Germany
| | - Martin Körsgen
- Physics Institute, Westfälische Wilhelms-Universität Münster , Wilhelm-Klemm-Straße 10, 48149 Münster, Germany
| | - Heinrich F Arlinghaus
- Physics Institute, Westfälische Wilhelms-Universität Münster , Wilhelm-Klemm-Straße 10, 48149 Münster, Germany
| | - Craig Jamieson
- Department of Pure and Applied Chemistry, University of Strathclyde , 295 Cathedral Street, Glasgow G1 1XL, U.K
| | - Bart Jan Ravoo
- Organic-Chemistry Institute and Center for Soft Nanoscience, Westfälische Wilhelms-Universität Münster , Corrensstraße 40, 48149 Münster, Germany
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54
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He Z, Chen Y, Wang Y, Wang J, Mo J, Fu B, Wang Z, Du Y, Zhou X. A rapidly photo-activatable light-up fluorescent nucleoside and its application in DNA base variation sensing. Chem Commun (Camb) 2018; 52:8545-8. [PMID: 27315545 DOI: 10.1039/c6cc03098j] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
A new DNA building block (d(Tet)U) bearing a tetrazole and allyloxy group at N-phenyl ring linked through an aminopropynyl linker to the 5-position of 2'-deoxyuridine was synthesized. The modified DNA can be lit up via a photoinduced intramolecular tetrazole-alkene cycloaddition reaction, but quenched when the fully-matched double strand is formed. This conspicuous difference in fluorescence could open a door for DNA single nucleotide polymorphism (SNP) typing.
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Affiliation(s)
- Zhiyong He
- College of Chemistry and Molecular Sciences, Key Laboratory of Biomedical Polymers of Ministry of Education, Wuhan University, Wuhan, Hubei 430072, P. R. China.
| | - Yuqi Chen
- College of Chemistry and Molecular Sciences, Key Laboratory of Biomedical Polymers of Ministry of Education, Wuhan University, Wuhan, Hubei 430072, P. R. China.
| | - Yafen Wang
- College of Chemistry and Molecular Sciences, Key Laboratory of Biomedical Polymers of Ministry of Education, Wuhan University, Wuhan, Hubei 430072, P. R. China.
| | - Jiaqi Wang
- College of Chemistry and Molecular Sciences, Key Laboratory of Biomedical Polymers of Ministry of Education, Wuhan University, Wuhan, Hubei 430072, P. R. China.
| | - Jing Mo
- College of Chemistry and Molecular Sciences, Key Laboratory of Biomedical Polymers of Ministry of Education, Wuhan University, Wuhan, Hubei 430072, P. R. China.
| | - Boshi Fu
- College of Chemistry and Molecular Sciences, Key Laboratory of Biomedical Polymers of Ministry of Education, Wuhan University, Wuhan, Hubei 430072, P. R. China.
| | - Zijing Wang
- College of Chemistry and Molecular Sciences, Key Laboratory of Biomedical Polymers of Ministry of Education, Wuhan University, Wuhan, Hubei 430072, P. R. China.
| | - Yuhao Du
- College of Chemistry and Molecular Sciences, Key Laboratory of Biomedical Polymers of Ministry of Education, Wuhan University, Wuhan, Hubei 430072, P. R. China.
| | - Xiang Zhou
- College of Chemistry and Molecular Sciences, Key Laboratory of Biomedical Polymers of Ministry of Education, Wuhan University, Wuhan, Hubei 430072, P. R. China.
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55
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Remy R, Bochet CG. Application of Photoclick Chemistry for the Synthesis of Pyrazoles via 1,3-Dipolar Cycloaddition between Alkynes and Nitrilimines Generated In Situ. European J Org Chem 2018. [DOI: 10.1002/ejoc.201701225] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Richard Remy
- Department of Chemistry; University of Fribourg; Chemin du Musée 9 CH-1700 Fribourg Switzerland
| | - Christian G. Bochet
- Department of Chemistry; University of Fribourg; Chemin du Musée 9 CH-1700 Fribourg Switzerland
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56
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Singh K, Fennell CJ, Coutsias EA, Latifi R, Hartson S, Weaver JD. Light Harvesting for Rapid and Selective Reactions: Click Chemistry with Strain-Loadable Alkenes. Chem 2018. [DOI: 10.1016/j.chempr.2017.11.007] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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57
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Cheng K, Lee JS, Hao P, Yao SQ, Ding K, Li Z. Tetrazole-Based Probes for Integrated Phenotypic Screening, Affinity-Based Proteome Profiling, and Sensitive Detection of a Cancer Biomarker. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201709584] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Ke Cheng
- School of Pharmacy; Jinan University; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Jun-Seok Lee
- Molecular Recognition Research Center; Korea Institute of Science and Technology (KIST); Department of Biological Chemistry; University of Science & Technology; Republic of Korea
| | - Piliang Hao
- School of Life Science and Technology; ShanghaiTech University; China
| | - Shao Q. Yao
- Department of Chemistry; National University of Singapore; Singapore
| | - Ke Ding
- School of Pharmacy; Jinan University; 601 Huangpu Avenue West Guangzhou 510632 China
| | - Zhengqiu Li
- School of Pharmacy; Jinan University; 601 Huangpu Avenue West Guangzhou 510632 China
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58
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Abstract
Hydrogels mimic many of the physical properties of soft tissue and are widely used biomaterials for tissue engineering and regenerative medicine. Synthetic hydrogels have been developed to recapitulate many of the healthy and diseased states of native tissues and can be used as a cell scaffold to study the effect of matricellular interactions in vitro. However, these matrices often fail to capture the dynamic and heterogenous nature of the in vivo environment, which varies spatially and during events such as development and disease. To address this deficiency, a variety of manufacturing and processing techniques are being adapted to the biomaterials setting. Among these, photochemistry is particularly well suited because these reactions can be performed in precise three-dimensional space and at specific moments in time. This spatiotemporal control over chemical reactions can also be performed over a range of cell- and tissue-relevant length scales with reactions that proceed efficiently and harmlessly at ambient conditions. This review will focus on the use of photochemical reactions to create dynamic hydrogel environments, and how these dynamic environments are being used to investigate and direct cell behavior.
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Affiliation(s)
- Tobin E Brown
- Department of Chemical and Biological Engineering, University of Colorado Boulder, USA.
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59
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Shang X, Lai R, Song X, Li H, Niu W, Guo J. Improved Photoinduced Fluorogenic Alkene-Tetrazole Reaction for Protein Labeling. Bioconjug Chem 2017; 28:2859-2864. [PMID: 29022697 DOI: 10.1021/acs.bioconjchem.7b00562] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The 1,3-dipolar cycloaddition reaction between an alkene and a tetrazole represents one elegant and rare example of fluorophore-forming bioorthogonal chemistry. This is an attractive reaction for imaging applications in live cells that requires less intensive washing steps and/or needs spatiotemporal resolutions. In the present work, as an effort to improve the fluorogenic property of the alkene-tetrazole reaction, an aromatic alkene (styrene) was investigated as the dipolarophile. Over 30-fold improvement in quantum yield of the reaction product was achieved in aqueous solution. According to our mechanistic studies, the observed improvement is likely due to an insufficient protonation of the styrene-tetrazole reaction product. This finding provides useful guidance to the future design of alkene-tetrazole reactions for biological studies. Fluorogenic protein labeling using the styrene-tetrazole reaction was demonstrated both in vitro and in vivo. This was realized by the genetic incorporation of an unnatural amino acid containing the styrene moiety. It is anticipated that the combination of styrene with different tetrazole derivatives can generally improve and broaden the application of alkene-tetrazole chemistry in real-time imaging in live cells.
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Affiliation(s)
- Xin Shang
- Department of Chemistry, ‡Department of Chemistry, Nebraska Center for Materials and Nanoscience, and Center for Integrated Biomolecular Communication, and §Department of Chemical & Biomolecular Engineering, University of Nebraska-Lincoln , Lincoln, Nebraska 68588, United States
| | - Rui Lai
- Department of Chemistry, ‡Department of Chemistry, Nebraska Center for Materials and Nanoscience, and Center for Integrated Biomolecular Communication, and §Department of Chemical & Biomolecular Engineering, University of Nebraska-Lincoln , Lincoln, Nebraska 68588, United States
| | - Xi Song
- Department of Chemistry, ‡Department of Chemistry, Nebraska Center for Materials and Nanoscience, and Center for Integrated Biomolecular Communication, and §Department of Chemical & Biomolecular Engineering, University of Nebraska-Lincoln , Lincoln, Nebraska 68588, United States
| | - Hui Li
- Department of Chemistry, ‡Department of Chemistry, Nebraska Center for Materials and Nanoscience, and Center for Integrated Biomolecular Communication, and §Department of Chemical & Biomolecular Engineering, University of Nebraska-Lincoln , Lincoln, Nebraska 68588, United States
| | - Wei Niu
- Department of Chemistry, ‡Department of Chemistry, Nebraska Center for Materials and Nanoscience, and Center for Integrated Biomolecular Communication, and §Department of Chemical & Biomolecular Engineering, University of Nebraska-Lincoln , Lincoln, Nebraska 68588, United States
| | - Jiantao Guo
- Department of Chemistry, ‡Department of Chemistry, Nebraska Center for Materials and Nanoscience, and Center for Integrated Biomolecular Communication, and §Department of Chemical & Biomolecular Engineering, University of Nebraska-Lincoln , Lincoln, Nebraska 68588, United States
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60
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Cheng K, Lee JS, Hao P, Yao SQ, Ding K, Li Z. Tetrazole-Based Probes for Integrated Phenotypic Screening, Affinity-Based Proteome Profiling, and Sensitive Detection of a Cancer Biomarker. Angew Chem Int Ed Engl 2017; 56:15044-15048. [PMID: 28967196 DOI: 10.1002/anie.201709584] [Citation(s) in RCA: 76] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2017] [Indexed: 01/10/2023]
Abstract
Target-identification phenotypic screening has been a powerful approach in drug discovery; however, it is hindered by difficulties in identifying the underlying cellular targets. To address this challenge, we have combined phenotypic screening of a fully functionalized small-molecule library with competitive affinity-based proteome profiling to map and functionally characterize the targets of screening hits. Using this approach, we identified ANXA2, PDIA3/4, FLAD1, and NOS2 as primary cellular targets of two bioactive molecules that inhibit cancer cell proliferation. We further demonstrated that a panel of probes can label and/or image annexin A2 (a cancer biomarker) from different cancer cell lines, thus providing opportunities for potential cancer diagnosis and therapy.
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Affiliation(s)
- Ke Cheng
- School of Pharmacy, Jinan University, 601 Huangpu Avenue West, Guangzhou, 510632, China
| | - Jun-Seok Lee
- Molecular Recognition Research Center, Korea Institute of Science and Technology (KIST), Department of Biological Chemistry, University of Science & Technology, Republic of Korea
| | - Piliang Hao
- School of Life Science and Technology, ShanghaiTech University, China
| | - Shao Q Yao
- Department of Chemistry, National University of Singapore, Singapore
| | - Ke Ding
- School of Pharmacy, Jinan University, 601 Huangpu Avenue West, Guangzhou, 510632, China
| | - Zhengqiu Li
- School of Pharmacy, Jinan University, 601 Huangpu Avenue West, Guangzhou, 510632, China
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61
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Burke EG, Gold B, Hoang TT, Raines RT, Schomaker JM. Fine-Tuning Strain and Electronic Activation of Strain-Promoted 1,3-Dipolar Cycloadditions with Endocyclic Sulfamates in SNO-OCTs. J Am Chem Soc 2017; 139:8029-8037. [PMID: 28505435 DOI: 10.1021/jacs.7b03943] [Citation(s) in RCA: 58] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
The ability to achieve predictable control over the polarization of strained cycloalkynes can influence their behavior in subsequent reactions, providing opportunities to increase both rate and chemoselectivity. A series of new heterocyclic strained cyclooctynes containing a sulfamate backbone (SNO-OCTs) were prepared under mild conditions by employing ring expansions of silylated methyleneaziridines. SNO-OCT derivative 8 outpaced even a difluorinated cyclooctyne in a 1,3-dipolar cycloaddition with benzylazide. The various orbital interactions of the propargylic and homopropargylic heteroatoms in SNO-OCT were explored both experimentally and computationally. The inclusion of these heteroatoms had a positive impact on stability and reactivity, where electronic effects could be utilized to relieve ring strain. The choice of the heteroatom combinations in various SNO-OCTs significantly affected the alkyne geometries, thus illustrating a new strategy for modulating strain via remote substituents. Additionally, this unique heteroatom activation was capable of accelerating the rate of reaction of SNO-OCT with diazoacetamide over azidoacetamide, opening the possibility of further method development in the context of chemoselective, bioorthogonal labeling.
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Affiliation(s)
- Eileen G Burke
- Department of Chemistry and ‡Department of Biochemistry, University of Wisconsin , Madison, Wisconsin 53706, United States
| | - Brian Gold
- Department of Chemistry and ‡Department of Biochemistry, University of Wisconsin , Madison, Wisconsin 53706, United States
| | - Trish T Hoang
- Department of Chemistry and ‡Department of Biochemistry, University of Wisconsin , Madison, Wisconsin 53706, United States
| | - Ronald T Raines
- Department of Chemistry and ‡Department of Biochemistry, University of Wisconsin , Madison, Wisconsin 53706, United States
| | - Jennifer M Schomaker
- Department of Chemistry and ‡Department of Biochemistry, University of Wisconsin , Madison, Wisconsin 53706, United States
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62
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Blasco E, Wegener M, Barner-Kowollik C. Photochemically Driven Polymeric Network Formation: Synthesis and Applications. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2017; 29. [PMID: 28075059 DOI: 10.1002/adma.201604005] [Citation(s) in RCA: 94] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2016] [Revised: 10/18/2016] [Indexed: 05/11/2023]
Abstract
Polymeric networks have been intensely investigated and a large number of applications have been found in areas ranging from biomedicine to materials science. Network fabrication via light-induced reactions is a particularly powerful tool, since light provides ready access to temporal and spatial control, opening an array of synthetic access routes for structuring the network geometry as well as functionality. Herein, the most recent light-induced modular reactions and their use in the formation of precision polymeric networks are collated. The synthetic strategies including photoinduced thiol-based reactions, Diels-Alder systems, and photogenerated reactive dipoles, as well as photodimerizations, are discussed in detail. Importantly, applications of the fabricated networks via the aforementioned reactions are highlighted with selected examples. Concomitantly, we provide future directions for the field, emphasizing the most critically required advances.
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Affiliation(s)
- Eva Blasco
- Institut für Technische Chemie und Polymerchemie, Karlsruhe Institute of Technology (KIT), Engesserstr. 18, 76128, Karlsruhe, Germany
- Institut für Biologische Grenzflächen, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - Martin Wegener
- Institute of Applied Physics, Karlsruhe Institute of Technology (KIT), Wolfgang-Gaede-Straße 1, 76128, Karlsruhe, Germany
- Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
| | - Christopher Barner-Kowollik
- Institut für Technische Chemie und Polymerchemie, Karlsruhe Institute of Technology (KIT), Engesserstr. 18, 76128, Karlsruhe, Germany
- Institut für Biologische Grenzflächen, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
- School of Chemistry, Physics and Mechanical Engineering, Queensland University of Technology (QUT), 2 George Street, Brisbane, QLD, 4000, Australia
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63
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Blasco E, Sugawara Y, Lederhose P, Blinco JP, Kelterer AM, Barner-Kowollik C. Understanding Reactivity Patterns in Light-Induced Nitrile Imine Mediated Tetrazole-Ene Cycloadditions. CHEMPHOTOCHEM 2017. [DOI: 10.1002/cptc.201600042] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Eva Blasco
- Preparative Macromolecular Chemistry, Institut für Technische Chemie und Polymerchemie; Karlsruhe Institute of Technology (KIT); Engesserstrasse 18 76128 Karlsruhe Germany
- Institut für Biologische Grenzflächen (IBG); Karlsruhe Institute of Technology (KIT); Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Germany
| | - Yuuki Sugawara
- Preparative Macromolecular Chemistry, Institut für Technische Chemie und Polymerchemie; Karlsruhe Institute of Technology (KIT); Engesserstrasse 18 76128 Karlsruhe Germany
- Institut für Biologische Grenzflächen (IBG); Karlsruhe Institute of Technology (KIT); Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Germany
| | - Paul Lederhose
- Preparative Macromolecular Chemistry, Institut für Technische Chemie und Polymerchemie; Karlsruhe Institute of Technology (KIT); Engesserstrasse 18 76128 Karlsruhe Germany
- School of Chemistry, Physics and Mechanical Engineering; Queensland University of Technology (QUT); 2 George Street Brisbane, QLD 4001 Australia
| | - James P. Blinco
- School of Chemistry, Physics and Mechanical Engineering; Queensland University of Technology (QUT); 2 George Street Brisbane, QLD 4001 Australia
| | - Anne-Marie Kelterer
- Institute of Physical and Theoretical Chemistry, NAWI Graz; Graz University of Technology; Stremayrgasse 9 8010 Graz Austria
| | - Christopher Barner-Kowollik
- Preparative Macromolecular Chemistry, Institut für Technische Chemie und Polymerchemie; Karlsruhe Institute of Technology (KIT); Engesserstrasse 18 76128 Karlsruhe Germany
- Institut für Biologische Grenzflächen (IBG); Karlsruhe Institute of Technology (KIT); Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Germany
- School of Chemistry, Physics and Mechanical Engineering; Queensland University of Technology (QUT); 2 George Street Brisbane, QLD 4001 Australia
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64
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Zengeya TT, Garlick JM, Kulkarni RA, Miley M, Roberts AM, Yang Y, Crooks DR, Sourbier C, Linehan WM, Meier JL. Co-opting a Bioorthogonal Reaction for Oncometabolite Detection. J Am Chem Soc 2016; 138:15813-15816. [PMID: 27960310 DOI: 10.1021/jacs.6b09706] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Dysregulated metabolism is a hallmark of many diseases, including cancer. Methods to fluorescently detect metabolites have the potential to enable new approaches to cancer detection and imaging. However, fluorescent sensing methods for naturally occurring cellular metabolites are relatively unexplored. Here we report the development of a chemical approach to detect the oncometabolite fumarate. Our strategy exploits a known bioorthogonal reaction, the 1,3-dipolar cycloaddition of nitrileimines and electron-poor olefins, to detect fumarate via fluorescent pyrazoline cycloadduct formation. We demonstrate hydrazonyl chlorides serve as readily accessible nitrileimine precursors, whose reactivity and spectral properties can be tuned to enable detection of fumarate and other dipolarophile metabolites. Finally, we show this reaction can be used to detect enzyme activity changes caused by mutations in fumarate hydratase, which underlie the familial cancer predisposition syndrome hereditary leiomyomatosis and renal cell cancer. Our studies define a novel intersection of bioorthogonal chemistry and metabolite reactivity that may be harnessed to enable biological profiling, imaging, and diagnostic applications.
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Affiliation(s)
- Thomas T Zengeya
- Chemical Biology Laboratory, National Cancer Institute , Frederick, Maryland 21702, United States
| | - Julie M Garlick
- Chemical Biology Laboratory, National Cancer Institute , Frederick, Maryland 21702, United States
| | - Rhushikesh A Kulkarni
- Chemical Biology Laboratory, National Cancer Institute , Frederick, Maryland 21702, United States
| | - Mikayla Miley
- Chemical Biology Laboratory, National Cancer Institute , Frederick, Maryland 21702, United States
| | - Allison M Roberts
- Chemical Biology Laboratory, National Cancer Institute , Frederick, Maryland 21702, United States
| | - Youfeng Yang
- Urologic Oncology Branch, National Cancer Institute , Bethesda, Maryland 20817, United States
| | - Daniel R Crooks
- Urologic Oncology Branch, National Cancer Institute , Bethesda, Maryland 20817, United States
| | - Carole Sourbier
- Urologic Oncology Branch, National Cancer Institute , Bethesda, Maryland 20817, United States
| | - W Marston Linehan
- Urologic Oncology Branch, National Cancer Institute , Bethesda, Maryland 20817, United States
| | - Jordan L Meier
- Chemical Biology Laboratory, National Cancer Institute , Frederick, Maryland 21702, United States
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65
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Kuan SL, Wang T, Weil T. Site-Selective Disulfide Modification of Proteins: Expanding Diversity beyond the Proteome. Chemistry 2016; 22:17112-17129. [PMID: 27778400 PMCID: PMC5600100 DOI: 10.1002/chem.201602298] [Citation(s) in RCA: 79] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2016] [Indexed: 01/06/2023]
Abstract
The synthetic transformation of polypeptides with molecular accuracy holds great promise for providing functional and structural diversity beyond the proteome. Consequently, the last decade has seen an exponential growth of site-directed chemistry to install additional features into peptides and proteins even inside living cells. The disulfide rebridging strategy has emerged as a powerful tool for site-selective modifications since most proteins contain disulfide bonds. In this Review, we present the chemical design, advantages and limitations of the disulfide rebridging reagents, while summarizing their relevance for synthetic customization of functional protein bioconjugates, as well as the resultant impact and advancement for biomedical applications.
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Affiliation(s)
- Seah Ling Kuan
- Institute of Organic Chemistry IIIUlm UniversityAlbert-Einstein-Allee 1189081UlmGermany
- Max Planck Institute for Polymer ResearchAckermannweg 1055128MainzGermany
| | - Tao Wang
- Institute of Organic Chemistry IIIUlm UniversityAlbert-Einstein-Allee 1189081UlmGermany
- School of Materials Science and EngineeringSouthwest Jiaotong UniversityChengdu610031P.R. China
| | - Tanja Weil
- Institute of Organic Chemistry IIIUlm UniversityAlbert-Einstein-Allee 1189081UlmGermany
- Max Planck Institute for Polymer ResearchAckermannweg 1055128MainzGermany
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66
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Ismael A, Fausto R, Cristiano MLS. Photochemistry of 1- and 2-Methyl-5-aminotetrazoles: Structural Effects on Reaction Pathways. J Org Chem 2016; 81:11656-11663. [PMID: 27809524 DOI: 10.1021/acs.joc.6b02023] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The influence of the position of the methyl substituent in 1- and 2-methyl-substituted 5-aminotetrazoles on the photochemistry of these molecules is evaluated. The two compounds were isolated in an argon matrix (15 K) and the matrix was subjected to in situ narrowband UV excitation at different wavelengths, which induce selectively photochemical transformations of different species (reactants and initially formed photoproducts). The progress of the reactions was followed by infrared spectroscopy, supported by quantum chemical calculations. It is shown that the photochemistries of the two isomers, 1-methyl-(1H)-tetrazole-5-amine (1a) and 2-methyl-(2H)-tetrazole-5-amine (1b), although resulting in a common intermediate diazirine 3, which undergoes subsequent photoconversion into 1-amino-3-methylcarbodiimide (H2N-N═C═N-CH3), show marked differences: formation of the amino cyanamide 4 (H2N-N(CH3)-C≡N) is only observed from the photocleavage of the isomer 1a, whereas formation of the nitrile imine 2 (H2N-C-═N+═N-CH3) is only obtained from photolysis of 1b. The exclusive formation of nitrile imine from the isomer 1b points to the possibility that only the 2H-tetrazoles forms can give a direct access to nitrile imines, while observation of the amino cyanamide 4 represents a novel reaction pathway in the photochemistry of tetrazoles and seems to be characteristic of 1H-tetrazoles. The structural and vibrational characterization of both reactants and photoproducts has been undertaken.
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Affiliation(s)
- A Ismael
- CCMAR and Department of Chemistry and Pharmacy, F.C.T., University of Algarve , P-8005-039 Faro, Portugal.,CQC, Department of Chemistry, University of Coimbra , P-3004-535 Coimbra, Portugal
| | - R Fausto
- CQC, Department of Chemistry, University of Coimbra , P-3004-535 Coimbra, Portugal
| | - M L S Cristiano
- CCMAR and Department of Chemistry and Pharmacy, F.C.T., University of Algarve , P-8005-039 Faro, Portugal
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67
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Singh MS, Chowdhury S, Koley S. Advances of azide-alkyne cycloaddition-click chemistry over the recent decade. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.07.044] [Citation(s) in RCA: 133] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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68
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Gold B, Aronoff MR, Raines RT. Decreasing Distortion Energies without Strain: Diazo-Selective 1,3-Dipolar Cycloadditions. J Org Chem 2016; 81:5998-6006. [PMID: 27332711 PMCID: PMC5141247 DOI: 10.1021/acs.joc.6b00948] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
The diazo group has attributes that complement those of the azido group for applications in chemical biology. Here, we use computational analyses to provide insights into the chemoselectivity of the diazo group in 1,3-dipolar cycloadditions. Dipole distortion energies are responsible for ∼80% of the overall energetic barrier for these reactions. Here, we show that diazo compounds, unlike azides, provide an opportunity to decrease that barrier substantially without introducing strain into the dipolarophile. The ensuing rate enhancement is due to the greater nucleophilic character of a diazo group compared to that of an azido group, which can accommodate decreased distortion energies without predistortion. The tuning of distortion energies with substituents in a diazo compound or dipolarophile can enhance reactivity and selectivity in a predictable manner. Notably, these advantages of diazo groups are amplified in water. Our findings provide a theoretical framework that can guide the design and application of both diazo compounds and azides in "orthogonal" contexts, especially for biological investigations.
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Affiliation(s)
- Brian Gold
- Department of Chemistry, University of Wisconsin–Madison, Madison, Wisconsin 53706, United States
| | - Matthew R. Aronoff
- Department of Chemistry, University of Wisconsin–Madison, Madison, Wisconsin 53706, United States
| | - Ronald T. Raines
- Department of Chemistry, University of Wisconsin–Madison, Madison, Wisconsin 53706, United States
- Department of Biochemistry, University of Wisconsin–Madison, Madison, Wisconsin 53706, United States
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69
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Hu P, Feng T, Yeung CC, Koo CK, Lau KC, Lam MHW. A Photo-Triggered Traceless Staudinger-Bertozzi Ligation Reaction. Chemistry 2016; 22:11537-42. [DOI: 10.1002/chem.201601807] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Indexed: 12/26/2022]
Affiliation(s)
- Peng Hu
- Department of Chemistry and Biology; City University of Hong Kong; 83 Tat Chee Avenue Hong Kong SAR China
| | - Tianshi Feng
- Department of Chemistry and Biology; City University of Hong Kong; 83 Tat Chee Avenue Hong Kong SAR China
- Advanced Laboratory for Environmental Research & Technology; USTC-CityU Suzhou China
- CAS Key Laboratory of Soft Matter Chemistry; Department of Polymer Science and Engineering; University of Science and Technology of China, Hefei; Anhui 230026 China
| | - Chi-Chung Yeung
- Department of Chemistry and Biology; City University of Hong Kong; 83 Tat Chee Avenue Hong Kong SAR China
| | - Chi-Kin Koo
- Department of Chemistry and Biology; City University of Hong Kong; 83 Tat Chee Avenue Hong Kong SAR China
| | - Kai-Chung Lau
- Department of Chemistry and Biology; City University of Hong Kong; 83 Tat Chee Avenue Hong Kong SAR China
| | - Michael H. W. Lam
- Department of Chemistry and Biology; City University of Hong Kong; 83 Tat Chee Avenue Hong Kong SAR China
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70
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Abstract
Over the years, there have been remarkable efforts in the development of selective protein labeling strategies. In this review, we deliver a comprehensive overview of the currently available bioorthogonal and chemoselective reactions. The ability to introduce bioorthogonal handles to proteins is essential to carry out bioorthogonal reactions for protein labeling in living systems. We therefore summarize the techniques that allow for site-specific "installation" of bioorthogonal handles into proteins. We also highlight the biological applications that have been achieved by selective chemical labeling of proteins.
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Affiliation(s)
- Xi Chen
- Chemical Genomics Centre of the Max Planck Society, Otto-Hahn-Str. 15, 44227 Dortmund, Germany
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71
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Herner A, Lin Q. Photo-Triggered Click Chemistry for Biological Applications. Top Curr Chem (Cham) 2016; 374:1. [PMID: 27397964 PMCID: PMC4935935 DOI: 10.1007/s41061-015-0002-2] [Citation(s) in RCA: 221] [Impact Index Per Article: 24.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2015] [Accepted: 11/11/2015] [Indexed: 12/24/2022]
Abstract
In the last decade and a half, numerous bioorthogonal reactions have been developed with a goal to study biological processes in their native environment, i.e., in living cells and animals. Among them, the photo-triggered reactions offer several unique advantages including operational simplicity with the use of light rather than toxic metal catalysts and ligands, and exceptional spatiotemporal control through the application of an appropriate light source with pre-selected wavelength, light intensity and exposure time. While the photoinduced reactions have been studied extensively in materials research, e.g., on macromolecular surface, the adaptation of these reactions for chemical biology applications is still in its infancy. In this chapter, we review the recent efforts in the discovery and optimization the photo-triggered bioorthogonal reactions, with a focus on those that have shown broad utility in biological systems. We discuss in each cases the chemical and mechanistic background, the kinetics of the reactions and the biological applicability together with the limiting factors.
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Affiliation(s)
- András Herner
- Department of Chemistry, State University of New York at Buffalo, Buffalo, NY 14260, USA
| | - Qing Lin
- Department of Chemistry, State University of New York at Buffalo, Buffalo, NY 14260, USA
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72
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Zhao S, Dai J, Hu M, Liu C, Meng R, Liu X, Wang C, Luo T. Photo-induced coupling reactions of tetrazoles with carboxylic acids in aqueous solution: application in protein labelling. Chem Commun (Camb) 2016; 52:4702-5. [DOI: 10.1039/c5cc10445a] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The coupling reactions of diaryltetrazoles with carboxylic acids under UV irradiation were investigated. Application of these transformations in chemical biology was demonstrated in photo-labelling the proteinogenic carboxylic acids in purified proteins, cell lysates and living cells.
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Affiliation(s)
- Shan Zhao
- Peking-Tsinghua Center for Life Sciences
- Academy for Advanced Interdisciplinary Studies
- Peking University
- Beijing 100871
- China
| | - Jianye Dai
- Peking-Tsinghua Center for Life Sciences
- Academy for Advanced Interdisciplinary Studies
- Peking University
- Beijing 100871
- China
| | - Mo Hu
- Beijing National Laboratory for Molecular Science (BNLMS)
- College of Chemistry and Molecular Engineering
- Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education
- College of Chemistry and Molecular Engineering
- Peking University
| | - Chang Liu
- Beijing National Laboratory for Molecular Science (BNLMS)
- College of Chemistry and Molecular Engineering
- Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education
- College of Chemistry and Molecular Engineering
- Peking University
| | - Rong Meng
- Beijing National Laboratory for Molecular Science (BNLMS)
- College of Chemistry and Molecular Engineering
- Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education
- College of Chemistry and Molecular Engineering
- Peking University
| | - Xiaoyun Liu
- Beijing National Laboratory for Molecular Science (BNLMS)
- College of Chemistry and Molecular Engineering
- Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education
- College of Chemistry and Molecular Engineering
- Peking University
| | - Chu Wang
- Peking-Tsinghua Center for Life Sciences
- Academy for Advanced Interdisciplinary Studies
- Peking University
- Beijing 100871
- China
| | - Tuoping Luo
- Peking-Tsinghua Center for Life Sciences
- Academy for Advanced Interdisciplinary Studies
- Peking University
- Beijing 100871
- China
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73
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74
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Mari C, Mosberger S, Llorente N, Spreckelmeyer S, Gasser G. Insertion of organometallic moieties into peptides and peptide nucleic acids using alternative “click” strategies. Inorg Chem Front 2016. [DOI: 10.1039/c5qi00270b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Application of alternative “click” strategies (metal-free photoclick and one-pot click) to cymantrene and ferrocene derivatives yielded novel metal-containing conjugates.
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Affiliation(s)
- Cristina Mari
- University of Zurich
- Department of Chemistry
- Zurich
- Switzerland
| | | | - Nuria Llorente
- University of Zurich
- Department of Chemistry
- Zurich
- Switzerland
| | | | - Gilles Gasser
- University of Zurich
- Department of Chemistry
- Zurich
- Switzerland
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75
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Li Z, Qian L, Li L, Bernhammer JC, Huynh HV, Lee JS, Yao SQ. Tetrazole Photoclick Chemistry: Reinvestigating Its Suitability as a Bioorthogonal Reaction and Potential Applications. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201508104] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Zhengqiu Li
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
- College of Pharmacy; Jinan University; Guangzhou 510632 China
| | - Linghui Qian
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
| | - Lin Li
- Key Laboratory of Flexible Electronics & Institute of Advanced Materials; Nanjing Tech University; Nanjing 211816 China
| | - Jan C. Bernhammer
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
| | - Han Vinh Huynh
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
| | - Jun-Seok Lee
- Molecular Recognition Research Center; Korea Institute of Science and Technology; Department of Biological Chemistry; University of Science & Technology; Republic of Korea
| | - Shao Q. Yao
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
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76
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Li Z, Qian L, Li L, Bernhammer JC, Huynh HV, Lee JS, Yao SQ. Tetrazole Photoclick Chemistry: Reinvestigating Its Suitability as a Bioorthogonal Reaction and Potential Applications. Angew Chem Int Ed Engl 2015; 55:2002-6. [DOI: 10.1002/anie.201508104] [Citation(s) in RCA: 133] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2015] [Indexed: 12/19/2022]
Affiliation(s)
- Zhengqiu Li
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
- College of Pharmacy; Jinan University; Guangzhou 510632 China
| | - Linghui Qian
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
| | - Lin Li
- Key Laboratory of Flexible Electronics & Institute of Advanced Materials; Nanjing Tech University; Nanjing 211816 China
| | - Jan C. Bernhammer
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
| | - Han Vinh Huynh
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
| | - Jun-Seok Lee
- Molecular Recognition Research Center; Korea Institute of Science and Technology; Department of Biological Chemistry; University of Science & Technology; Republic of Korea
| | - Shao Q. Yao
- Department of Chemistry; National University of Singapore; 3 Science Drive 3 Singapore 117543 Singapore
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77
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Ramanathan M, Wang YH, Liu ST. One-Pot Reactions for Synthesis of 2,5-Substituted Tetrazoles from Aryldiazonium Salts and Amidines. Org Lett 2015; 17:5886-9. [PMID: 26600121 DOI: 10.1021/acs.orglett.5b03068] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
One-pot sequential reactions of aryldiazonium salts with amidines followed by the treatment of I2/KI under basic conditions provide 2,5-disubstituted tetrazoles in moderate to excellent yields. This one-pot synthesis has several advantages such as mild reaction conditions, short reaction time, convenient workup, and high yields, making this methodology practical.
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Affiliation(s)
- Mani Ramanathan
- Department of Chemistry, National Taiwan University , Taipei 106, Taiwan
| | - Yu-Hao Wang
- Department of Chemistry, National Taiwan University , Taipei 106, Taiwan
| | - Shiuh-Tzung Liu
- Department of Chemistry, National Taiwan University , Taipei 106, Taiwan
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78
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Nunes CM, Reva I, Rosado MTS, Fausto R. The Quest for Carbenic Nitrile Imines: Experimental and Computational Characterization ofC-Amino Nitrile Imine. European J Org Chem 2015. [DOI: 10.1002/ejoc.201501153] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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79
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Du X, Li J, Welle A, Li L, Feng W, Levkin PA. Reversible and Rewritable Surface Functionalization and Patterning via Photodynamic Disulfide Exchange. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2015; 27:4997-5001. [PMID: 26192333 DOI: 10.1002/adma.201501177] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2015] [Revised: 06/12/2015] [Indexed: 06/04/2023]
Abstract
A reversible surface functionalization and patterning strategy based on a photodynamic disulfide exchange reaction is demonstrated. The method allows for rapid and reversible functionalization, patterning, and exchange or removal of functional groups on the surface.
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Affiliation(s)
- Xin Du
- Institute of Toxicology and Genetics, Karlsruhe Institute of Technology, 76021, Karlsruhe, Germany
- Angewandte Physikalische Chemie Ruprecht-Karls-Universität Heidelberg, 69120, Heidelberg, Germany
| | - Junsheng Li
- Institute of Toxicology and Genetics, Karlsruhe Institute of Technology, 76021, Karlsruhe, Germany
- Angewandte Physikalische Chemie Ruprecht-Karls-Universität Heidelberg, 69120, Heidelberg, Germany
| | - Alexander Welle
- Institute of Functional Interfaces, Karlsruhe Institute of Technology, 76021, Karlsruhe, Germany
- Karlsruhe Nano Micro Facility, Karlsruhe Institute of Technology, 76021, Karlsruhe, Germany
- David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, 500 Main Street, Cambridge, MA, 02139, USA
| | - Linxian Li
- Institute of Toxicology and Genetics, Karlsruhe Institute of Technology, 76021, Karlsruhe, Germany
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, 69120, Heidelberg, Germany
| | - Wenqian Feng
- Institute of Toxicology and Genetics, Karlsruhe Institute of Technology, 76021, Karlsruhe, Germany
- Organisch-Chemisches Institut, Ruprecht-Karls-Universität Heidelberg, 69120, Heidelberg, Germany
| | - Pavel A Levkin
- Institute of Toxicology and Genetics, Karlsruhe Institute of Technology, 76021, Karlsruhe, Germany
- Angewandte Physikalische Chemie Ruprecht-Karls-Universität Heidelberg, 69120, Heidelberg, Germany
- Institute of Organic Chemistry, Karlsruhe Institute of Technology, 76021, Karlsruhe, Germany
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80
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Efficient Photochemical Approaches for Spatially Resolved Surface Functionalization. Angew Chem Int Ed Engl 2015; 54:11388-403. [DOI: 10.1002/anie.201504920] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2015] [Indexed: 12/18/2022]
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81
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Delaittre G, Goldmann AS, Mueller JO, Barner-Kowollik C. Effiziente photochemische Verfahren für die räumlich aufgelöste Oberflächenfunktionalisierung. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201504920] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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82
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Merkel M, Peewasan K, Arndt S, Ploschik D, Wagenknecht HA. Copper-Free Postsynthetic Labeling of Nucleic Acids by Means of Bioorthogonal Reactions. Chembiochem 2015; 16:1541-53. [DOI: 10.1002/cbic.201500199] [Citation(s) in RCA: 64] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2015] [Indexed: 12/25/2022]
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83
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Feng W, Li L, Yang C, Welle A, Trapp O, Levkin PA. UV-Induced Tetrazole-Thiol Reaction for Polymer Conjugation and Surface Functionalization. Angew Chem Int Ed Engl 2015; 54:8732-5. [DOI: 10.1002/anie.201502954] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2015] [Indexed: 12/18/2022]
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84
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Feng W, Li L, Yang C, Welle A, Trapp O, Levkin PA. UV-Induced Tetrazole-Thiol Reaction for Polymer Conjugation and Surface Functionalization. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201502954] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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85
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Recent advances in bioorthogonal reactions for site-specific protein labeling and engineering. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2015.03.065] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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86
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Fuchise K, Lindemann P, Heißler S, Gliemann H, Trouillet V, Welle A, Berson J, Walheim S, Schimmel T, Meier MAR, Barner-Kowollik C. A photolithographic approach to spatially resolved cross-linked nanolayers. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2015; 31:3242-3253. [PMID: 25705846 DOI: 10.1021/la505011j] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The preparation of cross-linked nanosheets with 1-2 nm thickness and predefined shape was achieved by lithographic immobilization of trimethacryloyl thioalkanoates onto the surface of Si wafers, which were functionalized with 2-(phenacylthio)acetamido groups via a photoinduced reaction. Subsequent cross-linking via free radical polymerization as well as a phototriggered Diels-Alder reaction under mild conditions on the surface led to the desired nanosheets. Electrospray ionization mass spectrometry (ESI-MS), X-ray photoelectron spectroscopy (XPS), time-of-flight secondary ion mass spectrometry (ToF-SIMS), as well as infrared reflection-absorption spectroscopy (IRRAS) confirmed the success of individual surface-modification and cross-linking reactions. The thickness and lateral size of the cross-linked structures were determined by atomic force microscopy (AFM) for samples prepared on Si wafers functionalized with a self-assembled monolayer of 1H,1H,2H,2H-perfluorodecyl groups bearing circular pores obtained via a polymer blend lithographic approach, which led to the cross-linking reactions occurring in circular nanoareas (diameter of 50-640 nm) yielding an average thickness of 1.2 nm (radical cross-linking), 1.8 nm (radical cross-linking in the presence of 2,2,2-trifluoroethyl methacrylate as a comonomer), and 1.1 nm (photochemical cross-linking) of the nanosheets.
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Affiliation(s)
- Keita Fuchise
- †Preparative Macromolecular Chemistry, Institut für Technische Chemie und Polymerchemie (ITPC), Karlsruhe Institute of Technology (KIT), Engesserstr. 18, 76128 Karlsruhe, Germany
- ‡Laboratory of Applied Chemistry, Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany
| | - Peter Lindemann
- §Institute of Functional Interfaces (IFG), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Stefan Heißler
- §Institute of Functional Interfaces (IFG), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Hartmut Gliemann
- §Institute of Functional Interfaces (IFG), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Vanessa Trouillet
- ∥Institut für Angewandte Materialien (IAM) and Karlsruhe Nano Micro Facility (KNMF), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Alexander Welle
- †Preparative Macromolecular Chemistry, Institut für Technische Chemie und Polymerchemie (ITPC), Karlsruhe Institute of Technology (KIT), Engesserstr. 18, 76128 Karlsruhe, Germany
- ⊥Institut für Biologische Grenzflächen (IBG), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Jonathan Berson
- #Institute of Nanotechnology (INT), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
- ∇Institute of Applied Physics and Center for Functional Nanostructures (CFN), Karlsruhe Institute of Technology (KIT), 76128 Karlsruhe, Germany
| | - Stefan Walheim
- #Institute of Nanotechnology (INT), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
- ∇Institute of Applied Physics and Center for Functional Nanostructures (CFN), Karlsruhe Institute of Technology (KIT), 76128 Karlsruhe, Germany
| | - Thomas Schimmel
- #Institute of Nanotechnology (INT), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
- ∇Institute of Applied Physics and Center for Functional Nanostructures (CFN), Karlsruhe Institute of Technology (KIT), 76128 Karlsruhe, Germany
| | - Michael A R Meier
- ‡Laboratory of Applied Chemistry, Institute of Organic Chemistry (IOC), Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, 76131 Karlsruhe, Germany
| | - Christopher Barner-Kowollik
- †Preparative Macromolecular Chemistry, Institut für Technische Chemie und Polymerchemie (ITPC), Karlsruhe Institute of Technology (KIT), Engesserstr. 18, 76128 Karlsruhe, Germany
- ⊥Institut für Biologische Grenzflächen (IBG), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
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87
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Development of bioorthogonal reactions and their applications in bioconjugation. Molecules 2015; 20:3190-205. [PMID: 25690284 PMCID: PMC6290559 DOI: 10.3390/molecules20023190] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2015] [Revised: 01/19/2015] [Accepted: 02/02/2015] [Indexed: 12/12/2022] Open
Abstract
Biomolecule labeling using chemical probes with specific biological activities has played important roles for the elucidation of complicated biological processes. Selective bioconjugation strategies are highly-demanded in the construction of various small-molecule probes to explore complex biological systems. Bioorthogonal reactions that undergo fast and selective ligation under bio-compatible conditions have found diverse applications in the development of new bioconjugation strategies. The development of new bioorthogonal reactions in the past decade has been summarized with comments on their potentials as bioconjugation method in the construction of various biological probes for investigating their target biomolecules. For the applications of bioorthogonal reactions in the site-selective biomolecule conjugation, examples have been presented on the bioconjugation of protein, glycan, nucleic acids and lipids.
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88
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Stummer D, Herrmann C, Rentmeister A. Quantum Chemical Calculations and Experimental Validation of the Photoclick Reaction for Fluorescent Labeling of the 5' cap of Eukaryotic mRNAs. ChemistryOpen 2015; 4:295-301. [PMID: 26246991 PMCID: PMC4522179 DOI: 10.1002/open.201402104] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2014] [Indexed: 01/31/2023] Open
Abstract
Bioorthogonal click reactions are powerful tools to specifically label biomolecules in living cells. Considerable progress has been made in site-specific labeling of proteins and glycans in complex biological systems, but equivalent methods for mRNAs are rare. We present a chemo-enzymatic approach to label the 5’ cap of eukaryotic mRNAs using a bioorthogonal photoclick reaction. Herein, the N7-methylated guanosine of the 5’ cap is enzymatically equipped with an allyl group using a variant of the trimethylguanosine synthase 2 from Giardia lamblia (GlaTgs2). To elucidate whether the resulting N2-modified 5’ cap is a suitable dipolarophile for photoclick reactions, we used Kohn–Sham density functional theory (KS-DFT) and calculated the HOMO and LUMO energies of this molecule and nitrile imines. Our in silico studies suggested that combining enzymatic allylation of the cap with subsequent labeling in a photoclick reaction was feasible. This could be experimentally validated. Our approach generates a turn-on fluorophore site-specifically at the 5’ cap and therefore presents an important step towards labeling of eukaryotic mRNAs in a bioorthogonal manner.
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Affiliation(s)
- Daniela Stummer
- Institute of Biochemistry, Westfälische Wilhelms-Universität Münster Wilhelm-Klemm-Straße 2, 48149, Münster, Germany ; Cells-in-Motion Cluster of Excellence (EXC 1003-CiM), Westfälische Wilhelms-Universität Münster Wilhelm-Klemm-Straße 2, 48149, Münster, Germany
| | - Carmen Herrmann
- Institute of Inorganic Chemistry, University of Hamburg Martin-Luther-King-Platz 6, 20146, Hamburg, Germany
| | - Andrea Rentmeister
- Institute of Biochemistry, Westfälische Wilhelms-Universität Münster Wilhelm-Klemm-Straße 2, 48149, Münster, Germany ; Cells-in-Motion Cluster of Excellence (EXC 1003-CiM), Westfälische Wilhelms-Universität Münster Wilhelm-Klemm-Straße 2, 48149, Münster, Germany
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89
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Hufendiek A, Barner-Kowollik C, Meier MAR. Renewable, fluorescent, and thermoresponsive: cellulose copolymers via light-induced ligation in solution. Polym Chem 2015. [DOI: 10.1039/c5py00063g] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We introduce a mild photochemically driven strategy for the synthesis of fluorescent cellulose copolymers in solution using filter paper as the starting material.
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Affiliation(s)
- Andrea Hufendiek
- Preparative Macromolecular Chemistry
- Institut für Technische Chemie und Polymerchemie
- Karlsruhe Institute of Technology (KIT)
- 76128 Karlsruhe
- Germany
| | - Christopher Barner-Kowollik
- Preparative Macromolecular Chemistry
- Institut für Technische Chemie und Polymerchemie
- Karlsruhe Institute of Technology (KIT)
- 76128 Karlsruhe
- Germany
| | - Michael A. R. Meier
- Laboratory of Applied Chemistry
- Institute of Organic Chemistry
- Karlsruhe Institute of Technology (KIT)
- 76131 Karlsruhe
- Germany
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90
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Nunes CM, Reva I, Fausto R, Bégué D, Wentrup C. Bond-shift isomers: the co-existence of allenic and propargylic phenylnitrile imines. Chem Commun (Camb) 2015; 51:14712-5. [DOI: 10.1039/c5cc03518j] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Two bond-shift isomers of phenylnitrile imine resulting from photochemistry of 5-phenyltetrazole.
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Affiliation(s)
- Cláudio M. Nunes
- CQC
- Department of Chemistry
- University of Coimbra
- 3004-535 Coimbra
- Portugal
| | - Igor Reva
- CQC
- Department of Chemistry
- University of Coimbra
- 3004-535 Coimbra
- Portugal
| | - Rui Fausto
- CQC
- Department of Chemistry
- University of Coimbra
- 3004-535 Coimbra
- Portugal
| | - Didier Bégué
- IPREM – Institut des Sciences Analytiques et de Physico-chimie pour l'Environnement et les Matériaux
- UMR 5254
- Université de Pau et des Pays de l'Adour
- 64053 Pau Cedex 09
- France
| | - Curt Wentrup
- School of Chemistry and Molecular Biosciences
- The University of Queensland
- Brisbane
- Australia
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91
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Abstract
The site-specific incorporation of bioorthogonal groups via genetic code expansion provides a powerful general strategy for site-specifically labeling proteins with any probe. Here we describe the genetic encoding of dienophile-bearing unnatural amino acids into proteins expressed in Escherichia coli and mammalian cells using the pyrrolysyl-tRNA synthetase/tRNACUA pair and its variants. We describe the rapid fluorogenic labeling of proteins containing these unnatural amino acids in vitro, in E. coli, and in live mammalian cells with tetrazine-fluorophore conjugates in a bioorthogonal Diels-Alder reaction with inverse electron demand. These approaches have been extended to site-specific protein labeling in animals, and we anticipate that they will have a broad impact on the labeling and imaging field.
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Affiliation(s)
- Kathrin Lang
- Faculty of Chemistry, Technische Universität München, Institute for Advanced Study, Lichtenbergstr. 4, Garching, 85748, Germany,
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92
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Holstein JM, Stummer D, Rentmeister A. Enzymatic modification of 5'-capped RNA with a 4-vinylbenzyl group provides a platform for photoclick and inverse electron-demand Diels-Alder reaction. Chem Sci 2014; 6:1362-1369. [PMID: 29560223 PMCID: PMC5811123 DOI: 10.1039/c4sc03182b] [Citation(s) in RCA: 90] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2014] [Accepted: 11/26/2014] [Indexed: 01/20/2023] Open
Abstract
Enzymatic transfer of 4-vinylbenzyl to the mRNA 5′-cap gives access to the fluorogenic photoclick and the inverse electron-demand Diels–Alder reaction.
Chemo-enzymatic strategies provide a highly selective means to label different classes of biomolecules in vitro, but also in vivo. In the field of RNA, efficient labeling of eukaryotic mRNA with small organic reporter molecules would provide a way to detect endogenous mRNA and is therefore highly attractive. Although more and more bioorthogonal reactions are being reported, they can only be applied to chemo-enzymatic strategies if a suitable (i.e., click compatible) modification can be introduced into the RNA of interest. We report enzymatic site-specific transfer of a 4-vinylbenzyl group to the 5′-cap typical of eukaryotic mRNAs. The 4-vinylbenzyl group gives access to mRNA labeling using the inverse electron-demand Diels–Alder reaction, which does not work with an enzymatically transferred allyl group. The 4-vinylbenzyl-modified 5′-cap can also be converted in a photoclick reaction generating a “turn-on” fluorophore. Both click reactions are bioorthogonal and the two step approach also works in eukaryotic cell lysate. Enzymatic transfer of the 4-vinylbenzyl group addresses the lack of flexibility often attributed to biotransformations and thus advances the potential of chemo-enzymatic approaches for labeling.
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Affiliation(s)
- Josephin Marie Holstein
- Westfälische Wilhelms-Universität Münster , Institute of Biochemistry , 48149 Muenster , Germany .
| | - Daniela Stummer
- Westfälische Wilhelms-Universität Münster , Institute of Biochemistry , 48149 Muenster , Germany . .,Cells-in-Motion Cluster of Excellence (EXC 1003 - CiM) , University of Muenster , 48149 Muenster , Germany
| | - Andrea Rentmeister
- Westfälische Wilhelms-Universität Münster , Institute of Biochemistry , 48149 Muenster , Germany . .,Cells-in-Motion Cluster of Excellence (EXC 1003 - CiM) , University of Muenster , 48149 Muenster , Germany
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93
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Wang T, Wu Y, Kuan SL, Dumele O, Lamla M, Ng DYW, Arzt M, Thomas J, Mueller JO, Barner-Kowollik C, Weil T. A disulfide intercalator toolbox for the site-directed modification of polypeptides. Chemistry 2014; 21:228-38. [PMID: 25359430 DOI: 10.1002/chem.201403965] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2014] [Indexed: 12/15/2022]
Abstract
A disulfide intercalator toolbox was developed for site-specific attachment of a broad variety of functional groups to proteins or peptides under mild, physiological conditions. The peptide hormone somatostatin (SST) served as model compound for intercalation into the available disulfide functionalization schemes starting from the intercalator or the reactive SST precursor before or after bioconjugation. A tetrazole-SST derivative was obtained that undergoes photoinduced cycloaddition in mammalian cells, which was monitored by live-cell imaging.
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Affiliation(s)
- Tao Wang
- Institute of Organic Chemistry III, University of Ulm, Albert-Einstein-Allee 11, 89081 Ulm (Germany), Fax: (+49) 731-5022883
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94
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Xi W, Peng H, Aguirre-Soto A, Kloxin CJ, Stansbury JW, Bowman CN. Spatial and Temporal Control of Thiol-Michael Addition via Photocaged Superbase in Photopatterning and Two-Stage Polymer Networks Formation. Macromolecules 2014; 47:6159-6165. [PMID: 25264379 PMCID: PMC4172303 DOI: 10.1021/ma501366f] [Citation(s) in RCA: 94] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2014] [Revised: 08/15/2014] [Indexed: 12/11/2022]
Abstract
Photochemical processes enable spatial and temporal control of reactions, which can be implemented as an accurate external control approach in both polymer synthesis and materials applications. "Click" reactions have also been employed as efficient tools in the same field. Herein, we combined photochemical processes and thiol-Michael "click" reactions to achieve a "photo-click" reaction that can be used in surface patterning and controlled polymer network formation, owing to the ease of spatial and temporal control through use of photolabile amines as appropriate catalysts.
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Affiliation(s)
- Weixian Xi
- Department of Chemical and Biological Engineering, University of Colorado, Boulder, Colorado 80309-0596, United States
| | - Haiyan Peng
- Department of Chemical and Biological Engineering, University of Colorado, Boulder, Colorado 80309-0596, United States
- Guangzhou
Institute of Advanced Technology, Chinese
Academy of Science, Guangzhou, 511458, People’s Republic
of China
| | - Alan Aguirre-Soto
- Department of Chemical and Biological Engineering, University of Colorado, Boulder, Colorado 80309-0596, United States
| | - Christopher J. Kloxin
- Department of Materials Science & Engineering and
Department of Chemical & Biomolecular Engineering, University of Delaware, 150 Academy Street, Newark, Delaware 19716, United States
| | - Jeffery W. Stansbury
- Department of Chemical and Biological Engineering, University of Colorado, Boulder, Colorado 80309-0596, United States
| | - Christopher N. Bowman
- Department of Chemical and Biological Engineering, University of Colorado, Boulder, Colorado 80309-0596, United States
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95
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Lim RKV, Li N, Ramil CP, Lin Q. Fast and sequence-specific palladium-mediated cross-coupling reaction identified from phage display. ACS Chem Biol 2014; 9:2139-48. [PMID: 25025771 PMCID: PMC4168780 DOI: 10.1021/cb500443x] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Fast and specific bioorthogonal reactions are highly desirable because they provide efficient tracking of biomolecules that are present in low abundance and/or involved in fast dynamic process in living systems. Toward this end, classic strategy involves the optimization of substrate structures and reaction conditions in test tubes, testing their compatibility with biological systems, devising synthetic biology schemes to introduce the modified substrates into living cells or organisms, and finally validating the superior kinetics for enhanced capacity in tracking biomolecules in vivo--a lengthy process often mired by unexpected results. Here, we report a streamlined approach in which the "microenvironment" of a bioorthogonal chemical reporter is exploited directly in biological systems via phage-assisted interrogation of reactivity (PAIR) to optimize not only reaction kinetics but also specificity. Using the PAIR strategy, we identified a short alkyne-containing peptide sequence showing fast kinetics (k2=13,000±2000 M(-1) s(-1)) in a palladium-mediated cross-coupling reaction. Site-directed mutagenesis studies suggested that the residues surrounding the alkyne moiety facilitate the assembly of a key palladium-alkyne intermediate along the reaction pathway. When this peptide sequence was inserted into the extracellular domain of epidermal growth factor receptor (EGFR), this reactive sequence directed the specific labeling of EGFR in live mammalian cells.
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Affiliation(s)
- Reyna K. V. Lim
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, United States
| | - Nan Li
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, United States
| | - Carlo P. Ramil
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, United States
| | - Qing Lin
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260, United States
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96
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McKay CS, Finn MG. Click chemistry in complex mixtures: bioorthogonal bioconjugation. CHEMISTRY & BIOLOGY 2014; 21:1075-101. [PMID: 25237856 PMCID: PMC4331201 DOI: 10.1016/j.chembiol.2014.09.002] [Citation(s) in RCA: 584] [Impact Index Per Article: 53.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2014] [Revised: 09/01/2014] [Accepted: 09/02/2014] [Indexed: 01/18/2023]
Abstract
The selective chemical modification of biological molecules drives a good portion of modern drug development and fundamental biological research. While a few early examples of reactions that engage amine and thiol groups on proteins helped establish the value of such processes, the development of reactions that avoid most biological molecules so as to achieve selectivity in desired bond-forming events has revolutionized the field. We provide an update on recent developments in bioorthogonal chemistry that highlights key advances in reaction rates, biocompatibility, and applications. While not exhaustive, we hope this summary allows the reader to appreciate the rich continuing development of good chemistry that operates in the biological setting.
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Affiliation(s)
- Craig S McKay
- School of Chemistry & Biochemistry, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | - M G Finn
- School of Chemistry & Biochemistry, Georgia Institute of Technology, Atlanta, GA 30332, USA.
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97
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Kurra Y, Odoi KA, Lee YJ, Yang Y, Lu T, Wheeler SE, Torres-Kolbus J, Deiters A, Liu WR. Two rapid catalyst-free click reactions for in vivo protein labeling of genetically encoded strained alkene/alkyne functionalities. Bioconjug Chem 2014; 25:1730-8. [PMID: 25158039 PMCID: PMC4166034 DOI: 10.1021/bc500361d] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
![]()
Detailed
kinetic analyses of inverse electron-demand Diels–Alder
cycloaddition and nitrilimine-alkene/alkyne 1,3-diploar cycloaddition
reactions were conducted and the reactions were applied for rapid
protein bioconjugation. When reacted with a tetrazine or a diaryl
nitrilimine, strained alkene/alkyne entities including norbornene, trans-cyclooctene, and cyclooctyne displayed rapid kinetics.
To apply these “click” reactions for site-specific protein
labeling, five tyrosine derivatives that contain a norbornene, trans-cyclooctene, or cyclooctyne entity were genetically
encoded into proteins in Escherichia coli using an engineered pyrrolysyl-tRNA synthetase-tRNACUAPyl pair. Proteins
bearing these noncanonical amino acids were successively labeled with
a fluorescein tetrazine dye and a diaryl nitrilimine both in vitro
and in living cells.
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Affiliation(s)
- Yadagiri Kurra
- Department of Chemistry, Texas A&M University , College Station, Texas 77843, United States
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98
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Photoclick chemistry: a fluorogenic light-triggered in vivo ligation reaction. Curr Opin Chem Biol 2014; 21:89-95. [PMID: 25022432 DOI: 10.1016/j.cbpa.2014.05.024] [Citation(s) in RCA: 106] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2014] [Revised: 05/17/2014] [Accepted: 05/28/2014] [Indexed: 12/11/2022]
Abstract
The ability to use chemical reactivity to monitor and control biomolecular processes with a spatial and temporal precision motivated the development of light-triggered in vivo chemistries. To this end, the photoinduced tetrazole-alkene cycloaddition, also termed 'photoclick chemistry' offers a very rapid chemical ligation platform for the manipulation of biomolecules and matrices in vivo. Here we outline the recent developments in the optimization of this chemistry, ranging from the search for substrates that offer two-photon photoactivatability, superior reaction kinetics, and/or genetic encodability, to the study of the reaction mechanism. The applications of the photoclick chemistry in protein labeling in vitro and in vivo as well as in preparing 'smart' hydrogels for 3D cell culture are highlighted.
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99
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Tischer T, Rodriguez-Emmenegger C, Trouillet V, Welle A, Schueler V, Mueller JO, Goldmann AS, Brynda E, Barner-Kowollik C. Photo-patterning of non-fouling polymers and biomolecules on paper. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2014; 26:4087-4092. [PMID: 24719300 DOI: 10.1002/adma.201401006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2014] [Indexed: 06/03/2023]
Abstract
Functional cellulose substrates with tetrazole moieties are generated to serve as universal platforms for the spatio-temporal immobilization of synthetic ultra-low fouling polymer brushes and protein species via a nitrile imine-mediated tetrazole-ene cycloaddition (NITEC)-based protocol. Poly(carboxybetaine acrylamide) brushes are grafted from initiators photo-patterned by NITEC utilizing single electron transfer living radical polymerization. Streptavidin is photo-immobilized with remarkable efficiency, opening the possibility to generate new materials for biomedical and biosensing applications.
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Affiliation(s)
- Thomas Tischer
- Preparative Macromolecular Chemistry, Institut für Technische Chemie und Polymerchemie, Karlsruhe Institute of Technology (KIT), Engesserstr. 18, 76128, Karlsruhe, Germany; Institut für Biologische Grenzflächen (IBG), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany
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100
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Tong R, Tang L, Ma L, Tu C, Baumgartner R, Cheng J. Smart chemistry in polymeric nanomedicine. Chem Soc Rev 2014; 43:6982-7012. [DOI: 10.1039/c4cs00133h] [Citation(s) in RCA: 155] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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