Geomicrobiology of manganese(II) oxidation

Biogenic metal nanoparticles with microbes and their applications in water treatment: a review

Due to their unique characteristics, nanomaterials are widely used in many applications including water treatment. They are usually synthesized via physiochemical methods mostly involving toxic chemicals and extreme conditions. Recently, the biogenic metal nanoparticles (Bio-Me-NPs) with microbes have triggered extensive exploration. Besides their environmental-friendly raw materials and ambient biosynthesis conditions, Bio-Me-NPs also exhibit the unique surface properties and crystalline structures, which could eliminate various contaminants from water. Recent findings in the synthesis, morphology, composition, and structure of Bio-Me-NPs have been reviewed here, with an emphasis on the metal elements of Fe, Mn, Pd, Au, and Ag and their composites which are synthesized by bacteria, fungi, and algae. Furthermore, the mechanisms of eliminating organic and inorganic contaminants with Bio-Me-NPs are elucidated in detail, including adsorption, oxidation, reduction, and catalysis. The scale-up applicability of Bio-Me-NPs is also discussed.

Manganese Stress Adaptation Mechanisms of Bacillus safensis Strain ST7 From Mine Soil

The mechanism of bacterial adaption to manganese-polluted environments was explored using 50 manganese-tolerant strains of bacteria isolated from soil of the largest manganese mine in China. Efficiency of manganese removal by the isolated strains was investigated using atomic absorption spectrophotometry. Bacillus safensis strain ST7 was the most effective manganese-oxidizing bacteria among the tested isolates, achieving up to 82% removal at a Mn(II) concentration of 2,200 mg/L. Bacteria-mediated manganese oxide precipitates and high motility were observed, and the growth of strain ST7 was inhibited while its biofilm formation was promoted by the presence of Mn(II). In addition, strain ST7 could grow in the presence of high concentrations of Al(III), Cr(VI), and Fe(III). Genome-wide analysis of the gene expression profile of strain ST7 using the RNA-seq method revealed that 2,580 genes were differently expressed under Mn(II) exposure, and there were more downregulated genes (n = 2,021) than upregulated genes (n = 559) induced by Mn stress. KAAS analysis indicated that these differently expressed genes were mainly enriched in material metabolisms, cellular processes, organism systems, and genetic and environmental information processing pathways. A total of twenty-six genes from the transcriptome of strain ST7 were involved in lignocellulosic degradation. Furthermore, after 15 genes were knocked out by homologous recombination technology, it was observed that the transporters, multicopper oxidase, and proteins involved in sporulation and flagellogenesis contributed to the removal of Mn(II) in strain ST7. In summary, B. safensis ST7 adapted to Mn exposure by changing its metabolism, upregulating cation transporters, inhibiting sporulation and flagellogenesis, and activating an alternative stress-related sigB pathway. This bacterial strain could potentially be used to restore soil polluted by multiple heavy metals and is a candidate to support the consolidated bioprocessing community.

Coupled Mn(II) and Cr(III) Oxidation Mediated by Ascomycete Fungi

Manganese (Mn) oxides are considered as the primary oxidant of trivalent chromium [Cr(III)] in the environment. Microbial activities are responsible for the majority of Mn oxide formation in nature, thus likely influencing Cr(III) oxidation. Previous studies have been limited to Cr(III) oxidation by bacterial Mn oxides. Herein, we report coupled Mn(II) and Cr(III) oxidation in the presence of three Mn(II)-oxidizing Ascomycete fungi. In contrast to the previously reported inhibitory effect of Cr(III) on bacterial Mn(II) oxidation, varying effects of Cr(III) on fungal Mn(II) oxidation were observed, which may be linked to their Mn(II)-oxidation mechanisms. Under the concentrations of Mn(II) and Cr(III) applied in this study, Cr(III) promoted Mn(II) oxidation if it was mediated by hyphae-associated processes, but inhibited Mn(II) oxidation if it was achieved via extracellular enzymes/metabolites. The Cr(III) oxidation rate and extent were affected by Cr(III) speciation, Cr(VI) removal capacity (i.e., adsorption/reduction) of fungi, and organic content. The morphology and spatial relationship of Mn oxides with fungi varied, depending on fungal species and Cr(III) presence. Our findings highlight the importance of Mn(II)-oxidizing fungi in biogeochemical cycles of Mn and Cr and have significant implications for the origin of geogenic Cr(VI) and stability of reduced chromium in contaminated environments.

Oligo-heterotrophic Activity of Marinobacter subterrani Creates an Indirect Fe(II) Oxidation Phenotype in Gradient Tubes

Autotrophic bacteria utilizing Fe(II) as their energy and electron sources for growth affect multiple biogeochemical cycles. Some chemoheterotrophic bacteria have also been considered to exhibit an Fe(II) oxidation phenotype. For example, several Marinobacter strains have been reported to oxidize Fe(II) based on formation of oxidized iron bands in semi-solid gradient tubes that produce opposing concentration gradients of Fe(II) and oxygen. While gradient tubes are a simple and visually compelling method to test for Fe(II) oxidation, this method alone cannot confirm if, and to what extent, Fe(II) oxidation is linked to metabolism in chemoheterotrophic bacteria. Here we probe the possibility of protein-mediated and metabolic by-product-mediated Fe(II) oxidation in Marinobacter subterrani JG233, a chemoheterotroph previously proposed to oxidize Fe(II). Results from conditional and mutant studies, along with measurements of Fe(II) oxidation rates, suggest M. subterrani is unlikely to facilitate Fe(II) oxidation under microaerobic conditions. We conclude that the Fe(II) oxidation phenotype observed in gradient tubes inoculated with M. subterrani JG233 is a result of oligo-heterotrophic activity, shifting the location where oxygen dependent chemical Fe(II) oxidation occurs, rather than a biologically mediated process. IMPORTANCE Gradient tubes are the most commonly used method to isolate and identify neutrophilic Fe(II)-oxidizing bacteria. The formation of oxidized iron bands in gradient tubes provides a compelling assay to ascribe the ability to oxidize Fe(II) to autotrophic bacteria whose growth is dependent on Fe(II) oxidation. However, the physiological significance of Fe(II) oxidation in chemoheterotrophic bacteria is less well understood. Our work suggests that oligo-heterotrophic activity of certain bacteria may create a false-positive phenotype in gradient tubes by altering the location of the abiotic, oxygen-mediated oxidized iron band. Based on the results and analysis presented here, we caution against utilizing gradient tubes as the sole evidence for the capability of a strain to oxidize Fe(II) and that additional experiments are necessary to ascribe this phenotype to new isolates.

Rhodochrosite Oxidation by Dissolved Oxygen and the Formation of Mn Oxide Product: The Impact of Goethite as a Foreign Solid Substrate

Rhodochrosite conversion to Mn (oxyhydr)oxides significantly affects the fate and transport of various substances in the environment. We examined rhodochrosite oxidation by dissolved oxygen and the oxidation product formation with an emphasis on the effects of goethite substrate. Without goethite, rhodochrosite oxidation was slow as no detectable change was observed for 28 d with microscopic and spectroscopic analyses, except a minor change in X-ray diffraction. Interestingly, by contrast, it was greatly accelerated and completed in 7 d in the presence of goethite, resulting in the heteroepitaxial growth of groutite (α-MnOOH)-like Mn oxides on the goethite (α-FeOOH) tip surfaces. The formation of this secondary Mn oxide likely induced the acidification of the microenvironment in the vicinity of rhodochrosite particles and thereby promoted their dissolution. Subsequently, their oxidative conversion to the Mn oxide was expedited by the surface catalyzed Mn(II) oxidation on the goethite tip. Our results revealed that goethite as a foreign substrate imparts a decisive control on not only the rate but also the type of the reaction product of rhodochrosite oxidation. This study presents a new insight into the geochemical roles of foreign particles on the dynamics of redox-sensitive solid phases in the environment.

Manganese oxides in Phragmites rhizosphere accelerates ammonia oxidation in constructed wetlands

Phragmites reeds are widely used in constructed wetlands (CWs) for treating wastewater. The enrichment of microorganisms and Fe/Mn plaque in Phragmites rhizospheres largely contributes to pollutant removal. However, their interactions and potential synergistic roles in water purification are poorly understood. To address the issue, we first compared the microbial community traits in the Phragmites rhizosphere and adjacent bulk soil in six long-term operated CWs. Results showed that enriched microbes and functional genes in the Phragmites rhizosphere were largely involved in Mn oxidation, resulting in a two to three times enrichment of Mn oxides in the rhizosphere. In turn, the enriched Mn oxides played significant roles in driving microbial community composition and function. To further understand the biological manganese oxidation in the rhizosphere, we identified Mn-oxidizing bacteria using genome-centric analysis and found that 92% of identified Mn-oxidizing bacteria potentially participated in nitrogen cycling. We then conducted relationships between Mn-oxidizing genes and different nitrogen cycling genes and found Mn-oxidizing gene abundance was significantly correlated with ammonia oxidation gene amoA (R = 0.65). Remarkably, complete ammonia oxidation (comammox) Nitrospira, accounting for 39.11% of ammonia oxidizers, also positively correlated with Mn-oxidizing microbes. Based on the above observations, we inferred that the use of Mn oxides as a substrate in CWs may enhance ammonia oxidation. To apply this to actual engineering, we explored treatment performance in a pilot-scale Mn-amending CW. As expected, ammonia removal capacity improved by 23.34%, on average, in the Mn-amending CW. In addition, the abundance of amoA genes increased significantly in the Mn-amending CW, indicating improved biological processes rather than chemical reactions.

Manganese-Oxidizing Antarctic Bacteria (Mn-Oxb) Release Reactive Oxygen Species (ROS) as Secondary Mn(II) Oxidation Mechanisms to Avoid Toxicity

Manganese (Mn) oxidation is performed through oxidative Mn-oxidizing bacteria (MnOxb) as the main bio-weathering mechanism for Mn(III/IV) deposits during soil formation. However, with an increase in temperature, the respiration rate also increases, producing Reactive Oxygen Species (ROS) as by-products, which are harmful to microbial cells. We hypothesize that bacterial ROS oxidize Mn(II) to Mn(III/IV) as a secondary non-enzymatic temperature-dependent mechanism for cell protection. Fourteen MnOxb were isolated from Antarctic soils under the global warming effect, and peroxidase (PO) activity, ROS, and Mn(III/IV) production were evaluated for 120 h of incubation at 4 °C, 15 °C, and 30 °C. ROS contributions to Mn oxidation were evaluated in Arthrobacter oxydans under antioxidant (Trolox) and ROS-stimulated (menadione) conditions. The Mn(III/IV) concentration increased with temperature and positively correlated with ROS production. ROS scavenging with Trolox depleted the Mn oxidation, and ROS-stimulant increased the Mn precipitation in A. oxydans. Increasing the Mn(II) concentration caused a reduction in the membrane potential and bacterial viability, which resulted in Mn precipitation on the bacteria surface. In conclusion, bacterial ROS production serves as a complementary non-enzymatic temperature-dependent mechanism for Mn(II) oxidation as a response in warming environments.

Zeolite-supported manganese oxides decrease the Cd uptake of wheat plants in Cd-contaminated weakly alkaline arable soils

Cd pollution in arable soils has posed serious threats to food safety and human health. Mn oxides and Mn oxide-based materials have been widely applied to the removal of heavy metals for their high adsorption capacity, especially in water treatment. However, the performance and stability of Mn oxide-based materials and the underlying mechanism of Cd immobilization in upland soils remain unclear. Here, zeolite-supported Mn oxides were used as amendment to investigate their impact on the availability of soil Cd in wheat pot experiments. The decrease in soil available Cd content (by 44.3%) and increase in soil available Mn content (by 61.9%) significantly inhibited Cd accumulation in wheat plant tissues under the application of zeolite-supported Mn oxides. The exchangeable Cd was transformed to more stable fractionation of Fe-Mn oxide bound Cd, and the maximum decrease of Cd content in wheat grains, straw and roots reached 65.0%, 11.7% and 55.3%, respectively. Besides, zeolite-supported Mn oxides exhibited high chemical stability and stable Cd immobilization performance in two successive years of wheat pot experiments. These findings improve our understanding of Mn oxide-based materials for soil remediation and indicate that zeolite-supported Mn oxides have great potential for the remediation of Cd-contaminated alkaline upland soils.

The Microbiology of Metal Mine Waste: Bioremediation Applications and Implications for Planetary Health

Mine wastes pollute the environment with metals and metalloids in toxic concentrations, causing problems for humans and wildlife. Microorganisms colonize and inhabit mine wastes, and can influence the environmental mobility of metals through metabolic activity, biogeochemical cycling and detoxification mechanisms. In this article we review the microbiology of the metals and metalloids most commonly associated with mine wastes: arsenic, cadmium, chromium, copper, lead, mercury, nickel and zinc. We discuss the molecular mechanisms by which bacteria, archaea, and fungi interact with contaminant metals and the consequences for metal fate in the environment, focusing on long-term field studies of metal-impacted mine wastes where possible. Metal contamination can decrease the efficiency of soil functioning and essential element cycling due to the need for microbes to expend energy to maintain and repair cells. However, microbial communities are able to tolerate and adapt to metal contamination, particularly when the contaminant metals are essential elements that are subject to homeostasis or have a close biochemical analog. Stimulating the development of microbially reducing conditions, for example in constructed wetlands, is beneficial for remediating many metals associated with mine wastes. It has been shown to be effective at low pH, circumneutral and high pH conditions in the laboratory and at pilot field-scale. Further demonstration of this technology at full field-scale is required, as is more research to optimize bioremediation and to investigate combined remediation strategies. Microbial activity has the potential to mitigate the impacts of metal mine wastes, and therefore lessen the impact of this pollution on planetary health.

Oxidative transformation of emerging organic contaminants by aqueous permanganate: Kinetics, products, toxicity changes, and effects of manganese products

Permanganate (Mn(VII)) has been widely studied for removal of emerging organic contaminants (EOCs) in water treatment and in situ chemical oxidation process. Studies on the reactive intermediate manganese products (e.g., Mn(III) and manganese dioxide (MnO₂)) generated from Mn(VII) reduction by EOCs in recent decades shed new light on Mn(VII) oxidation process. The present work summarizes the latest research findings on Mn(VII) reactions with a wide range of EOCs (including phenols, olefins, and amines) in detailed aspects of reaction kinetics, oxidation products, and toxicity changes, along with special emphasis on the impacts of intermediate manganese products (mainly Mn(III) and MnO₂) in-situ formed. Mn(VII) shows appreciable reactivities towards EOCs with apparent second-order rate constants (k_app) generally decrease in the order of olefins (k_app = 0.3 - 2.1 × 10⁴ M^-1s^-1) > phenols (k_app = 0.03 - 460 M^-1s^-1) > amines (k_app = 3.5 × 10^-3 - 305.3 M^-1s^-1) at neutral pH. Phenolic benzene ring (for phenols), (conjugated) double bond (for olefins), primary amine group and the N-containing heterocyclic ring (for amines) are the most reactive sites towards Mn(VII) oxidation, leading to the formation of products with different structures (e.g., hydroxylated, aldehyde, carbonyl, quinone-like, polymeric, ring-opening, nitroso/nitro and C-N cleavage products). Destruction of functional groups of EOCs (e.g., benzene ring, (conjugated) double bond, and N-containing heterocyclic) by Mn(VII) tends to decrease solution toxicity, while oxidation products with higher toxicity than parent EOCs (e.g., quinone-like products in the case of phenolic EOCs) are sometimes formed. Mn(III) stabilized by model or unknown ligands remarkably accelerates phenolic EOCs oxidation by Mn(VII) under acidic to neutral conditions, while MnO₂ enhances the oxidation efficiency of phenolic and amine EOCs by Mn(VII) at acidic pH. The intermediate manganese products participate in Mn(VII) oxidation process most likely as both oxidants and catalysts with their generation/stability/reactivity affecting by the presence of NOM, ligand, cations, and anions in water matrices. This work presents the state-of-the-art findings on Mn(VII) oxidation of EOCs, especially highlights the significant roles of manganese products, which advances our understanding on Mn(VII) oxidation and its application in future water treatment processes.

Growth rates for freshwater ferromanganese concretions indicate regional climate change in eastern Canada at the Northgrippian-Meghalayan boundary

The existence of freshwater ferromanganese concretions has been known for decades, but we are not aware of a generally accepted explanation for their formation, and there has been little research into their potential use as records of Holocene climate and paleohydrology. A conceptual model is presented to describe the environmental and geochemical processes which result in the formation and growth of freshwater ferromanganese concretions. In order to evaluate their potential as historical geochemical records, a concretion from Magaguadavic Lake, New Brunswick, Canada is the focus of a detailed geochronological and geochemical investigation. The radiocarbon data provide a coherent growth curve and a maximum age for the concretion of 8448 ± 43 years, consistent with the establishment of Magaguadavic Lake as a stable post-glacial lacustrine system. The data suggest accretion rates of 1.5 and 3.4 mm per 1000 years during the Northgrippian and Meghalayan stages of the Holocene, respectively. The abrupt change in growth rate observed at the stage boundary may be an indicator of Holocene climate change. These features are consistent with inferences from previous research that warmer climate in the Northgrippian led to eutrophication in some lakes in eastern North America. The results confirm that freshwater Fe-Mn concretions may yield important information about past climatic and environmental conditions.

Rethinking microbial infallibility in the metagenomics era

The 'principle of microbial infallibility' was a mainstay of microbial physiology and environmental microbiology in earlier decades. This principle asserts that wherever there is an energetic gain to be made from environmental resources, microorganisms will find a way to take advantage of the situation. Although previously disputed, this claim was revived with the discovery of anammox bacteria and other major contributors to biogeochemistry. Here, we discuss the historical background to microbial infallibility, and focus on its contemporary relevance to metagenomics. Our analysis distinguishes exploration-driven metagenomics from hypothesis-driven metagenomics. In particular, we show how hypothesis-driven metagenomics can use background assumptions of microbial infallibility to enable the formulation of hypotheses to be tested by enrichment cultures. Discoveries of comammox and the anaerobic oxidation of methane are major instances of such strategies, and we supplement them with outlines of additional examples. This overview highlights one way in which metagenomics is making the transition from an exploratory data-analysis programme of research to a hypothesis-testing one. We conclude with a discussion of how microbial infallibility is a heuristic with far-reaching implications for the investigation of life.

Metallo-inhibition of Mnx, a bacterial manganese multicopper oxidase complex

The manganese oxidase complex, Mnx, from Bacillus sp. PL-12 contains a multicopper oxidase (MCO) and oxidizes dissolved Mn(II) to form insoluble manganese oxide (MnO₂) mineral. Previous kinetic and spectroscopic analyses have shown that the enzyme's mechanism proceeds through an activation step that facilitates formation of a series of binuclear Mn complexes in the oxidation states II, III, and IV on the path to MnO₂ formation. We now demonstrate that the enzyme is inhibited by first-row transition metals in the order of the Irving-Williams series. Zn(II) strongly (K_i ~ 1.5 μM) inhibits both activation and turnover steps, as well as the rate of Mn(II) binding. The combined Zn(II) and Mn(II) concentration dependence establishes that the inhibition is non-competitive. This result is supported by electron paramagnetic resonance (EPR) spectroscopy, which reveals unaltered Mnx-bound Mn(II) EPR signals, both mono- and binuclear, in the presence of Zn(II). We infer that inhibitory metals bind at a site separate from the substrate sites and block the conformation change required to activate the enzyme, a case of allosteric inhibition. The likely biological role of this inhibitory site is discussed in the context of Bacillus spore physiology. While Cu(II) inhibits Mnx strongly, in accord with the Irving-Williams series, it increases Mnx activation at low concentrations, suggesting that weakly bound Cu, in addition to the four canonical MCO-Cu, may support enzyme activity, perhaps as an electron transfer agent.

Forced Biomineralization: A Review

Biologically induced and controlled mineralization of metals promotes the development of protective structures to shield cells from thermal, chemical, and ultraviolet stresses. Metal biomineralization is widely considered to have been relevant for the survival of life in the environmental conditions of ancient terrestrial oceans. Similar behavior is seen among extremophilic biomineralizers today, which have evolved to inhabit a variety of industrial aqueous environments with elevated metal concentrations. As an example of extreme biomineralization, we introduce the category of "forced biomineralization", which we use to refer to the biologically mediated sequestration of dissolved metals and metalloids into minerals. We discuss forced mineralization as it is known to be carried out by a variety of organisms, including polyextremophiles in a range of psychrophilic, thermophilic, anaerobic, alkaliphilic, acidophilic, and halophilic conditions, as well as in environments with very high or toxic metal ion concentrations. While much additional work lies ahead to characterize the various pathways by which these biominerals form, forced biomineralization has been shown to provide insights for the progression of extreme biomimetics, allowing for promising new forays into creating the next generation of composites using organic-templating approaches under biologically extreme laboratory conditions relevant to a wide range of industrial conditions.

Complete Degradation and Detoxification of Ciprofloxacin by a Micro-/Nanostructured Biogenic Mn Oxide Composite from a Highly Active Mn2+-Oxidizing Pseudomonas Strain

Ciprofloxacin (CIP), as a representative broad-spectrum antibiotic, poses a major threat to human health and the ecological environment as a result of its abuse and emissions. In this study, a highly active Mn²⁺-oxidizing bacterium, Pseudomonas sp. CCTCC M2014168, was induced to form micro-/nanostructured biogenic Mn oxide (BMO) aggregates through continuous culturing with 1 mmoL^-1 Mn²⁺. Following the characterization of Mn⁴⁺ oxides and the micro-/nanostructures by scanning electron microscopy, high-resolution transmission electron microscopy and X-ray diffraction assays, the BMO composites were subjected to CIP degradation and detoxification in laboratory trials. High-performance liquid chromatograph (HPLC) analysis identified that the BMO composites were capable of completely degrading CIP, and HPLC with a mass spectrometer (LC/MS) assays identified three intermediates in the degradation pathway. The reaction temperature, pH and initial ciprofloxacin concentration substantially affected the degradation efficiency of CIP to a certain extent, and the metal ions Mg²⁺, Cu²⁺, Ni²⁺ and Co²⁺ exerted significant inhibitory effects on CIP degradation. A toxicity test of the degradation products showed that CIP was completely detoxified by degradation. Moreover, the prepared BMO composite exhibited a high capacity for repeated degradation and good performance in continuous degradation cycles, as well as a high capacity to degrade CIP in real natural water.

Genome analysis of Pseudomonas sp. OF001 and Rubrivivax sp. A210 suggests multicopper oxidases catalyze manganese oxidation required for cylindrospermopsin transformation

BACKGROUND

Cylindrospermopsin is a highly persistent cyanobacterial secondary metabolite toxic to humans and other living organisms. Strain OF001 and A210 are manganese-oxidizing bacteria (MOB) able to transform cylindrospermopsin during the oxidation of Mn²⁺. So far, the enzymes involved in manganese oxidation in strain OF001 and A210 are unknown. Therefore, we analyze the genomes of two cylindrospermopsin-transforming MOB, Pseudomonas sp. OF001 and Rubrivivax sp. A210, to identify enzymes that could catalyze the oxidation of Mn²⁺. We also investigated specific metabolic features related to pollutant degradation and explored the metabolic potential of these two MOB with respect to the role they may play in biotechnological applications and/or in the environment.

RESULTS

Strain OF001 encodes two multicopper oxidases and one haem peroxidase potentially involved in Mn²⁺ oxidation, with a high similarity to manganese-oxidizing enzymes described for Pseudomonas putida GB-1 (80, 83 and 42% respectively). Strain A210 encodes one multicopper oxidase potentially involved in Mn²⁺ oxidation, with a high similarity (59%) to the manganese-oxidizing multicopper oxidase in Leptothrix discophora SS-1. Strain OF001 and A210 have genes that might confer them the ability to remove aromatic compounds via the catechol meta- and ortho-cleavage pathway, respectively. Based on the genomic content, both strains may grow over a wide range of O₂ concentrations, including microaerophilic conditions, fix nitrogen, and reduce nitrate and sulfate in an assimilatory fashion. Moreover, the strain A210 encodes genes which may convey the ability to reduce nitrate in a dissimilatory manner, and fix carbon via the Calvin cycle. Both MOB encode CRISPR-Cas systems, several predicted genomic islands, and phage proteins, which likely contribute to their genome plasticity.

CONCLUSIONS

The genomes of Pseudomonas sp. OF001 and Rubrivivax sp. A210 encode sequences with high similarity to already described MCOs which may catalyze manganese oxidation required for cylindrospermopsin transformation. Furthermore, the analysis of the general metabolism of two MOB strains may contribute to a better understanding of the niches of cylindrospermopsin-removing MOB in natural habitats and their implementation in biotechnological applications to treat water.

The Energetic Potential for Undiscovered Manganese Metabolisms in Nature

Microorganisms are found in nearly every surface and near-surface environment, where they gain energy by catalyzing reactions among a wide variety of chemical compounds. The discovery of new catabolic strategies and microbial habitats can therefore be guided by determining which redox reactions can supply energy under environmentally-relevant conditions. In this study, we have explored the thermodynamic potential of redox reactions involving manganese, one of the most abundant transition metals in the Earth's crust. In particular, we have assessed the Gibbs energies of comproportionation and disproportionation reactions involving Mn²⁺ and several Mn-bearing oxide and oxyhydroxide minerals containing Mn in the +II, +III, and +IV oxidation states as a function of temperature (0-100°C) and pH (1-13). In addition, we also calculated the energetic potential of Mn²⁺ oxidation coupled to O₂, NO₂ ^-, NO₃ ^-, and FeOOH. Results show that these reactions-none of which, except O₂ + Mn²⁺, are known catabolisms-can provide energy to microorganisms, particularly at higher pH values and temperatures. Comproportionation between Mn²⁺ and pyrolusite, for example, can yield 10 s of kJ (mol Mn)^-1. Disproportionation of Mn³⁺ can yield more than 100 kJ (mol Mn)^-1 at conditions relevant to natural settings such as sediments, ferromanganese nodules and crusts, bioreactors and suboxic portions of the water column. Of the Mn²⁺ oxidation reactions, the one with nitrite as the electron acceptor is most energy yielding under most combinations of pH and temperature. We posit that several Mn redox reactions represent heretofore unknown microbial metabolisms.

Macromolecular Characterization of Compound Selectivity for Oxidation and Oxidative Alterations of Dissolved Organic Matter by Manganese Oxide

Manganese (Mn) oxides can oxidize dissolved organic matter (DOM) and alter its chemical properties and microbial degradability, but the compound selectivity for oxidation and oxidative alterations remain to be determined. We applied ultrahigh mass spectrometry to catalog the macromolecular composition of Suwannee River fulvic acid (SRFA) before and after oxidation by a Mn oxide (δ-MnO₂) at pH 4 or 6. Polycyclic aromatic hydrocarbons, polyphenols, and carbohydrates were more reactive in reducing δ-MnO₂ than highly unsaturated and phenolic (HuPh) compounds and aliphatics, but highly abundant HuPh contributed the most (∼50%) to the overall reduction of δ-MnO₂. On average, oxidized species had higher molecular weights, aromaticity, carbon unsaturation degree, nominal oxidation state of carbon, and oxygen and nitrogen contents but were lower in hydrogen content compared to unoxidized species. The oxidation decreased these molecular indices and oxygen and nitrogen contents but increased the hydrogen content, with stronger changes at the lower pH. This DOM oxidation on polar mineral surfaces was more selective but shared similar selectivity rules to adsorption. The abiotic oxidation resembles microbial oxidative degradation of organic matter, and Mn oxide-oxidizable carbon may be a useful index for detection and identification of labile organic carbon.

Sustained production of superoxide radicals by manganese oxides under ambient dark conditions

Manganese (Mn) oxides are ubiquitous in the environment and have strong reactivity to induce the transformation of various contaminants. However, whether reactive oxygen species contribute to their surface reactivity remains unclear. Here, sustainable production of superoxide radicals (O₂^•-) by various MnO₂ polymorphs in the dark was quantified and the mechanisms involved were explored. The results confirm that O₂^•- was produced through one-electron transfer from surface Mn(III) to adsorbed O₂. In contrast, no H₂O₂ was detected due to its decomposition by Mn oxides to form O₂^•- and Mn(III), leading to the sustained production of O₂^•- on Mn oxide surfaces. In addition, the production of O₂^•- was found to make a clear contribution (4 - 28%) to the transformation of a series of halophenols by MnO₂, suggesting that the O₂^•--mediated surface reaction is an important supplement to the direct electron-transfer mechanism in the reactivity of Mn oxides. These findings advance our understanding of the surface reactivity of Mn oxides and also reveal an important but hitherto unrecognized abiotic source of O₂^•- in the natural environment.

Degradation of ofloxacin by a manganese-oxidizing bacterium Pseudomonas sp. F2 and its biogenic manganese oxides

Fluoroquinolone antibiotics like ofloxacin (OFL) have been frequently detected in the aquatic environment. Recently manganese-oxidizing bacteria (MOB) have attracted research efforts on the degradation of recalcitrant pollutants with the aid of their biogenic manganese oxides (BioMnOx). Herein, the degradation of OFL with a strain of MOB (Pseudomonas sp. F2) was investigated for the first time. It was found that the bacteria can degrade up to 100% of 5 μg/L OFL. BioMnOx and Mn(III) intermediates significantly contributed to the degradation. Moreover, the degradation was clearly declined when the microbial activity was inactivated by heat or ethanol, indicating the importance of bioactivity. Possible transformation products of OFL were identified by HPLC-MS and the degradation pathway was proposed. In addition, the toxicity of OFL was reduced by 66% after the degradation.

Dichotomy between Regulation of Coral Bacterial Communities and Calcification Physiology under Ocean Acidification Conditions

Ocean acidification (OA) threatens the growth and function of coral reef ecosystems. A key component to coral health is the microbiome, but little is known about the impact of OA on coral microbiomes. A submarine CO₂ vent at Maug Island in the Northern Mariana Islands provides a natural pH gradient to investigate coral responses to long-term OA conditions. Three coral species (Pocillopora eydouxi, Porites lobata, and Porites rus) were sampled from three sites where the mean seawater pH is 8.04, 7.98, and 7.94. We characterized coral bacterial communities (using 16S rRNA gene sequencing) and determined pH of the extracellular calcifying fluid (ECF) (using skeletal boron isotopes) across the seawater pH gradient. Bacterial communities of both Porites species stabilized (decreases in community dispersion) with decreased seawater pH, coupled with large increases in the abundance of Endozoicomonas, an endosymbiont. P. lobata experienced a significant decrease in ECF pH near the vent, whereas P. rus experienced a trending decrease in ECF pH near the vent. In contrast, Pocillopora exhibited bacterial community destabilization (increases in community dispersion), with significant decreases in Endozoicomonas abundance, while its ECF pH remained unchanged across the pH gradient. Our study shows that OA has multiple consequences on Endozoicomonas abundance and suggests that Endozoicomonas abundance may be an indicator of coral response to OA. We reveal an interesting dichotomy between two facets of coral physiology (regulation of bacterial communities and regulation of calcification), highlighting the importance of multidisciplinary approaches to understanding coral health and function in a changing ocean.IMPORTANCE Ocean acidification (OA) is a consequence of anthropogenic CO₂ emissions that is negatively impacting marine ecosystems such as coral reefs. OA affects many aspects of coral physiology, including growth (i.e., calcification) and disrupting associated bacterial communities. Coral-associated bacteria are important for host health, but it remains unclear how coral-associated bacterial communities will respond to future OA conditions. We document changes in coral-associated bacterial communities and changes to calcification physiology with long-term exposure to decreases in seawater pH that are environmentally relevant under midrange IPCC emission scenarios (0.1 pH units). We also find species-specific responses that may reflect different responses to long-term OA. In Pocillopora, calcification physiology was highly regulated despite changing seawater conditions. In Porites spp., changes in bacterial communities do not reflect a breakdown of coral-bacterial symbiosis. Insights into calcification and host-microbe interactions are critical to predicting the health and function of different coral taxa to future OA conditions.

Natural attenuation of lead by microbial manganese oxides in a karst aquifer

Lead is a toxic environmental contaminant associated with current and historic mine sites. Here we studied the natural attenuation of Pb in a limestone cave system that receives drainage from the ancient Priddy Mineries, UK. Extensive deposits of manganese oxides were observed to be forming on the cave walls and as coatings in the stream beds. Analysis of these deposits identified them as birnessite (δ-MnO₂), with some extremely high concentrations of sorbed Pb (up to 56 wt%) also present. We hypothesised that these cave crusts were actively being formed by microbial Mn(II)-oxidation, and to investigate this the microbial communities were characterised by DNA sequencing, enrichment and isolation experiments. The birnessite deposits contained abundant and diverse prokaryotes and fungi, with ~5% of prokaryotes and ~ 10% of fungi closely related to known heterotrophic Mn(II)-oxidisers. A substantial proportion (up to 17%) of prokaryote sequences were assigned to groups known as autotrophic ammonia and nitrite oxidisers, suggesting that nitrogen cycling may play an important role in contributing energy and carbon to the cave crust microbial communities and consequently the formation of Mn(IV) oxides and Pb attenuation. Enrichment and isolation experiments showed that the birnessite deposits contained Mn(II)-oxidising microorganisms, and two isolates (Streptomyces sp. and Phyllobacterium sp.) could oxidise Mn(II) in the presence of 0.1 mM Pb. Supplying the enrichment cultures with acetate as a source of energy and carbon stimulated Mn(II)-oxidation, but excess organics in the form of glucose generated aqueous Mn(II), likely via microbial Mn(IV)-reduction. In this karst cave, microbial Mn(II)-oxidation contributes to the active sequestration and natural attenuation of Pb from contaminated waters, and therefore may be considered a natural analogue for the design of wastewater remediation systems and for understanding the geochemical controls on karst groundwater quality, a resource relied upon by billions of people across the globe.

Synthesis of MnO/C/NiO-Doped Porous Multiphasic Composites for Lithium-Ion Batteries by Biomineralized Mn Oxides from Engineered Pseudomonas putida Cells

A biotemplated cation-incoporating method based on bacterial cell-surface display technology and biogenic Mn oxide mineralization process was developed to fabricate Mn-based multiphasic composites as anodes for Li-ion batteries. The engineered Pseudomonas putida MB285 cells with surface-immobilized multicopper oxidase serve as nucleation centers in the Mn oxide biomineralization process, and the Mn oxides act as a settler for incorporating Ni ions to form aggregates in this process. The assays using X-ray photoelectron spectroscopy, phase compositions, and fine structures verified that the resulting material MnO/C/NiO (CMB-Ni) was porous multiphasic composites with spherical and porous nanostructures. The electrochemical properties of materials were improved in the presence of NiO. The reversible discharge capacity of CMB-Ni remained at 352.92 mAh g^-1 after 200 cycles at 0.1 A g^-1 current density. In particular, the coulombic efficiency was approximately 100% after the second cycle for CMB-Ni.

Enrichment of marine manganese-oxidizing microorganisms using polycaprolactone as a solid organic substrate

OBJECTIVE

Heterotrophic manganese (Mn)-oxidizing microorganisms responsible for biogenic manganese oxide (Bio-MnOx) production are fastidious. Their enrichment is not easily accomplished by merely adding a soluble organic substrate to non-sterile mixed cultures. The objective of this study was to evaluate polycaprolactone (PCL), an aliphatic polyester, as an effective solid organic substrate for the enrichment of marine Mn-oxidizing microorganisms.

RESULTS

We successfully obtained marine microbial enrichment with the capacity for dissolved Mn removal and MnOx production using PCL as a solid organic substrate. The removal of dissolved Mn by the Mn-oxidizing enrichment culture followed first-order kinetics with a rate constant of 0.014 h^-1. 16S rRNA gene amplicon sequencing analysis revealed that the Mn-oxidizing enrichment culture was highly dominated by operational taxonomic units related to the bacterial phyla Cyanobacteria, Planctomycetes, and Proteobacteria.

CONCLUSIONS

Our data demonstrate that PCL can serve as a potential substrate to enrich Mn-oxidizing microorganisms with the ability to produce MnOx under marine conditions.

Rhizosphere iron and manganese-oxidizing bacteria stimulate root iron plaque formation and regulate Cd uptake of rice plants (Oryza sativa L.)

Iron plaque is the amorphous and/or crystalline layer of Fe and Mn (hydr)oxides formed on the root surface of wetland plants. It could adsorb and co-precipitate metal(loid)s at the rhizosphere, thus modulating the uptake and accumulation of metal elements in plants. In this study, the Fe(II)/Mn(II)-oxidizing bacteria Burkholderia sp. D416 (D416) and Pseudomonas sp. YGL (YGL) were isolated from Cd-contaminated rice field, both hydroponic experiment and pot experiment were performed to assess the impact of bacterial inoculation on iron plaque formation, elemental content of the plaque, plant dry mass, antioxidant enzyme activity and Cd content in rice plants. The results revealed that inoculation with D416, YGL, and D416+YGL stimulated iron plaque formation on the root surface of the hydroponic rice. The content of C, N, O, Na, Mg, Al, Si, P, S, Cl, K, Fe and Ca in the root plaque were affected by the bacterial inoculation and varied among different plant growth stages. The pot experiment indicated that inoculation with D416 increased the root dry biomass by 58.89%, and the combined inoculation of D416 and YGL increased the dry biomass of root, shoot and grain by 16.89%, 21.66% and 23.26%, respectively. Importantly, YGL inoculation decreased the Cd translocation from root to shoot and from glume to brown rice grain by 50.00% and 50.27%, respectively, and the Cd content in shoot and brown rice grain were decreased by 20.00% and 34.48%, respectively. Taken together, the elemental content of the iron plaque and Cd content in rice plants varied among different plant growth stages and when plants were inoculated with different bacterial strains. YGL dramatically reduced the Cd content in brown rice grain, thus it could potentially be used to reduce Cd content in rice crop grown in Cd-contaminated soils.

Self-regulating microbiome networks ensure functional resilience of biofilms in sand biofilters during manganese load fluctuations

Sand biofilters (SBFs) are commonly used to remove manganese (Mn(II)) from drinking water. Mn(II) load variation frequently occurs in SBFs due to fluctuating influent Mn(II) concentrations or flow rates. Therefore, it is important to understand the responses of microbial biofilms in SBFs to environmental disturbances and how they affect Mn(II) oxidation efficiency. Here, the responses of microbial ecological networks and Mn(II) removal in SBFs to increasing Mn(II) load were investigated. The Mn(II) removal efficiency in two SBFs remained at 99.8% despite an increase in influent Mn(II) from 2 mg/L to 4 mg/L, but significantly deteriorated (50.1-58.5%) upon increasing the filtration rate. A canonical correlation analysis of the microbial communities indicated that the local Mn(II) concentration and biofilter depth impacted community compositions of biofilms. The dominant species within the biofilms exhibited clear stratification, with simple associations in the upper layer of the SBFs and more complex interspecies interactions in the bottom layers. Putative manganese-oxidizing bacteria Hyphomicrobium and Pedomicrobium dominated the microbiomes in different layers of SBFs, and changed relatively little in abundance when Mn(II) and filtration rate increased. The community networks showed that biofilm microbiomes in SBFs were resilient to the disturbance of Mn(II) load, primarily via regulating microbial interactions. High manganese loads negatively affected the functional modules for Mn(II) removal. Furthermore, the relatively rare species Candidatus Entotheonella palauensis was identified as a module hub, implying taxa with low abundances can have important roles in ecosystem function. These results shed new light on the ecological rules guiding responses of microbiomes in sand biofilters to environmental stress.

Formation and transformation of manganese(III) intermediates in the photochemical generation of manganese(IV) oxide minerals

As important natural oxidants and adsorbents, manganese (Mn) oxide minerals affect the speciation, bioavailability and fate of pollutants and nutrient elements. It was found that birnessite-type Mn(IV) oxide minerals can be formed in the presence of NO₃^- and solar irradiation. However, the photochemical formation and transformation processes from Mn²⁺ to Mn(IV) oxide minerals remain unclear. In this work, the Mn(IV) oxide minerals were confirmed to be photochemically formed mainly due to the disproportionation of Mn(III) intermediates generated from the oxidation of Mn²⁺ in the presence of NO₃^- under UV light irradiation. The oxidation rate of Mn²⁺ to Mn(IV) oxide minerals decreased with increasing initial Mn²⁺ concentration due to the lower disproportionation rate. The increase in NO₃^- concentration, pH and temperature promoted Mn²⁺ photochemical oxidation. The photochemical formation rate of Mn(IV) oxide minerals increased with increasing ligand concentrations at low ligand concentrations. Ligands affected the formation of Mn(IV) oxide minerals by promoting the formation and reducing the reactivity of Mn(III) intermediates. Overall, this work reveals the important role of Mn(III) intermediates in the formation of natural Mn oxide minerals.

The aggregation kinetics of manganese oxides nanoparticles in Al(III) electrolyte solutions: Roles of distinct Al(III) species and natural organic matters

This study explored the aggregation kinetics of manganese oxides (MnO_x) nanoparticles in Al(III) electrolyte solutions. This is a common process in both water treatments and the natural environment. The results show that aggregation kinetics are Al(III) species-dependent. Without natural organic matters (NOM), ferron Al_a (monomeric Al(III)) and ferron Al_b (polymeric Al(III)) are the main species controlling the Derjaguin-Landau-Verwey-Overbeek (DLVO) type aggregation behavior of MnO_x at pH 5.0 and 7.2, respectively. Al_a and Al_b can neutralize and reverse the negative charge of MnO_x. Correspondingly, the attachment efficiency as a function of Al(III) concentrations contains three stages: destabilization, diffusion-limited, and re-stabilization stage. Interestingly, due to the tiny size of Al_b nanoclusters, they behave similar to free ions and do not induce heteroaggregation at pH 7.2. The influence of some model NOM (i.e., bovine serum albumin (BSA), Sigma humic acid (HA), and alginate) was also studied. At pH 5.0, alginate polymers, while Sigma HA and BSA cannot be, are linked by Al(III) to form alginate gel clusters which bridge MnO_x nanoparticles, and thus induce bridging flocculation. At pH 7.2, NOM induce the aggregation of Al_b nanoclusters to form NOM-Al(III) aggregates through charge neutralization effects. Consequently, highly enhanced aggregation rate, due to the heteroaggregation between these aggregates and MnO_x, was observed.

Groundwater pollution containing ammonium, iron and manganese in a riverbank filtration system: Effects of dynamic geochemical conditions and microbial responses

Bench-scale experiments were conducted to investigate the effect of hydraulic loadings and influent concentration on the migration and biotransformation behavior of three groundwater pollutants: ammonium (NH₄ ⁺), iron (Fe²⁺) and manganese (Mn²⁺). Columns packed with aquifer media collected from a river bank filtration (RBF) site in Harbin City, NE China were introduced synthetic groundwater (SGW) or real groundwater (RGW) were at two different constant flow rates and initial contaminant concentrations to determine the impact of system conditions on the fate of the target pollutants biotransformation. The results showed that the biotransformation rate of Fe²⁺ Mn²⁺, and NH₄ ⁺ decreased by 8%, 39% and 15% under high flow rate (50 L d^-1) compared to low flow rate (25 L d^-1), which was consistent with the residence-time effect. While the biotransformation rate of Fe²⁺ Mn²⁺, and NH₄ ⁺ decreased by 7%, 14% and 9% under high influent concentration compared to original groundwater. The 16S rRNA analysis of the aquifer media at different depths after experiments completion demonstrated that the relative abundance of major functional microbes iron oxidizing bacteria (IOB) and manganese oxidizing bacteria (MnOB) under higher flow rate and higher influent concentration decreased 13%, 14% and 25%, 24%, respectively, whereas the ammonium oxidizing bacteria (AOB) and nitrite oxidizing bacteria (NOB) exhibited minimal change, compared to the lower flow rate. Above all results indicated that both high flow rate and high concentration inhibit the biotransformation of NH₄ ⁺, Fe²⁺ and Mn²⁺. The biotransformation of Fe²⁺ and Mn²⁺ occurs primarily in the 0-40 cm and 20-60 cm depth intervals, respectively, whereas the NH₄ ⁺ biotransformation appears to occur relatively uniformly throughout the whole 110cm column. The biotransformation kinetics of NH₄ ⁺ in RGW and SGW, Mn²⁺ in RGW at different depths accords with the first order kinetics model, while Fe²⁺ in RGW and SGW, Mn²⁺ in SGW presented more complicated biotransformation process. The results should improve understanding of the transport and fate of common groundwater pollutants in riverbank filtration and other groundwater recharge environments.

Smectitization as a Trigger of Bacterially Mediated Mn-Fe Micronodule Generation in Felsic Glass (Livno-Tomislavgrad Paleolake, Bosnia and Herzegovina)

Miocene tuffs preserved in argillaceous sediment interbedded with lacustrine successions are commonly encountered throughout the Dinarides Lake System (DLS) in south-eastern Europe. In this contribution the volcanic glass degradation and co-genetic Mn-Fe precipitation were studied in a 14.68 Ma felsic tuff from DLS Livno-Tomislavgrad Basin. Microbial activity has been involved in both reactions thus adding the interest of revealing effects of biotic and abiotic processes taking place during tuff eogenesis. X-ray diffraction and electron microbeam analysis with energy-dispersive X-ray spectroscopy revealed the pitting or granular structures developed at glass rims along with smectite flakes protruding from a degrading glass. Mn-Fe mineralization emerges in the form of Mn-Fe coatings, an initial step to micronodule formation, where traces of biogenetic influence included a high content of phases rich in structural Mn (IV) (i.e., ranciéite and jacobsite) and presence of microbial microfossils. Co-genetic ties between glass degradation and Mn-Fe precipitation were established through the report of dioctahedral smectite formed out of altered glass; which then served as nuclei of the ongoing biotic and abiotic Mn-Fe mineralization. These processes manifest on a continuous involvement of microbial life in the course of eogenesis of pyroclastic material in lacustrine environments.

Novel insights into the taxonomic diversity and molecular mechanisms of bacterial Mn(III) reduction

Soluble ligand-bound Mn(III) can support anaerobic microbial respiration in diverse aquatic environments. Thus far, Mn(III) reduction has only been associated with certain Gammaproteobacteria. Here, we characterized microbial communities enriched from Mn-replete sediments of Lake Matano, Indonesia. Our results provide the first evidence for the biological reduction of soluble Mn(III) outside the Gammaproteobacteria. Metagenome assembly and binning revealed a novel betaproteobacterium, which we designate 'Candidatus Dechloromonas occultata.' This organism dominated the enrichment and expressed a porin-cytochrome c complex typically associated with iron-oxidizing Betaproteobacteria and a novel cytochrome c-rich protein cluster (Occ), including an undecaheme putatively involved in extracellular electron transfer. This occ gene cluster was also detected in diverse aquatic bacteria, including uncultivated Betaproteobacteria from the deep subsurface. These observations provide new insight into the taxonomic and functional diversity of microbially driven Mn(III) reduction in natural environments.

Microbial community composition in iron deposits and manganese crusts formed in riverine environments around the Aso area in Japan

The Kurokawa river flowing through the Aso Caldera in Southwest Japan is influenced by groundwater containing high concentration of dissolved metals (Fe²⁺ and Mn²⁺) and is associated with orange deposits in the upstream and thick black crusts on the wall of artificial waterway tunnel with several km lengths in the midstream regions. X-ray fluorescence analysis revealed that the orange deposits contained up to 34.4% Fe and black crusts comprised up to 25.4% and 10.6% Mn and Fe, respectively. Although naturally occurring Mn-oxides and crusts are considered biogenic in pH-neutral freshwater environments, the whole microbial community in Mn crust and their contribution to Mn crust formation in these environments remain unclear. High-throughput molecular sequencing for bacteria and eukaryotes including fungi revealed black Mn crusts had a high abundance of Sphingomonas, Hyphomicrobium, Bacillus, Pseudomonas, and Mortierella, previously reported genera including several species with Mn-oxidizing activity in Mn crusts or nodules of other marine and freshwater environments. In addition, one bacterial isolate and one fungal isolate with Mn-oxidizing activity were obtained from black Mn crust. These results suggest that multiple Mn-oxidizing bacteria including Pseudomonas and fungi are involved in Mn crust formation on the wall of dark waterway tunnel in the oligotrophic environment of the Kurokawa river.

Microbially Induced Mineralization of Layered Mn Oxides Electroactive in Li Batteries

Nanoparticles produced by bacteria, fungi, or plants generally have physicochemical properties such as size, shape, crystalline structure, magnetic properties, and stability which are difficult to obtain by chemical synthesis. For instance, Mn(II)-oxidizing organisms promote the biomineralization of manganese oxides with specific textures under ambient conditions. Controlling their crystallinity and texture may offer environmentally relevant routes of Mn oxide synthesis with potential technological applications, e.g., for energy storage. However, whereas the electrochemical activity of synthetic (abiotic) Mn oxides has been extensively studied, the electroactivity of Mn biominerals has been seldom investigated yet. Here we evaluated the electroactivity of biologically induced biominerals produced by the Mn(II)-oxidizer bacteria Pseudomonas putida strain MnB1. For this purpose, we explored the mechanisms of Mn biomineralization, including the kinetics of Mn(II) oxidation, under different conditions. Manganese speciation, biomineral structure, and texture as well as organic matter content were determined by a combination of X-ray diffraction, electron and X-ray microscopies, and thermogravimetric analyses coupled to mass spectrometry. Our results evidence the formation of an organic–inorganic composite material and a competition between the enzymatic (biotic) oxidation of Mn(II) to Mn(IV) yielding MnO₂ birnessite and the abiotic formation of Mn(III), of which the ratio depends on oxygenation levels and activity of the bacteria. We reveal that a subtle control over the conditions of the microbial environment orients the birnessite to Mn(III)-phases ratio and the porosity of the assembly, which both strongly impact the bulk electroactivity of the composite biomineral. The electrochemical properties were tested in lithium battery configuration and exhibit very appealing performances (voltage, capacity, reversibility, and power capability), thanks to the specific texture resulting from the microbially driven synthesis route. Given that such electroactive Mn biominerals are widespread in the environment, our study opens an alternative route for the synthesis of performing electrode materials under environment-friendly conditions.

Arsenic redox transformations and cycling in the rhizosphere of Pteris vittata and Pteris quadriaurita

Pteris vittata (PV) and Pteris quadriaurita (PQ) are reported to hyperaccumulate arsenic (As) when grown in Asrich soil. Yet, little is known about the impact of their unique As accumulation mechanisms on As transformations and cycling at the soil-root interface. Using a combined approach of two-dimensional (2D), sub-mm scale solute imaging of arsenite (As^III), arsenate (As^V), phosphorus (P), manganese (Mn), iron (Fe) and oxygen (O₂), we found localized patterns of As^III/As^V redox transformations in the PV rhizosphere (As^III/As^V ratio of 0.57) compared to bulk soil (As^III/As^V ratio of ≤0.04). Our data indicate that the high As root uptake, translocation and accumulation from the As-rich experimental soil (2080 mg kg^-1) to PV fronds (6986 mg kg^-1) induced As detoxification via As^V reduction and As^III root efflux, leading to As^III accumulation and re-oxidation to As^V in the rhizosphere porewater. This As cycling mechanism is linked to the reduction of O2 and Mn^III/IV (oxyhydr)oxides resulting in decreased O2 levels and increased Mn solubilization along roots. Compared to PV, we found 4-fold lower As translocation to PQ fronds (1611 mg kg^-1), 2-fold lower As^V depletion in the PQ rhizosphere, and no As^III efflux from PQ roots, suggesting that PQ efficiently controls As uptake to avoid toxic As levels in roots. Analysis of root exudates obtained from soil-grown PV showed that As acquisition by PV roots was not associated with phytic acid release. Our study demonstrates that two closely-related As-accumulating ferns have distinct mechanisms for As uptake modulating As cycling in As-rich environments.

Iron and manganese fluxes across the sediment-water interface in a drinking water reservoir

The development of low dissolved oxygen (DO) concentrations in the hypolimnion of drinking water reservoirs during thermal stratification can lead to the reduction of oxidized, insoluble iron (Fe) and manganese (Mn) in sediments to soluble forms, which are then released into the water column. As metals degrade drinking water quality, robust measurements of metal fluxes under changing oxygen conditions are critical for optimizing water treatment. In this study, we conducted benthic flux chamber experiments in summer 2018 to directly quantify Fe and Mn fluxes at the sediment-water interface under different DO and redox conditions of a eutrophic drinking water reservoir with an oxygenation system (Falling Creek Reservoir, Vinton, VA, USA). Throughout the experiments, we monitored DO, oxidation-reduction potential (ORP), water temperature, and pH in the chambers and compared the metal fluxes in the chambers with time-series of fluxes calculated using a hypolimnetic mass balance method. Our results showed that metal fluxes were highly variable during the monitoring period and were sensitive to redox conditions in the water column at the sediment-water interface. The time-series changes in fluxes and relationship to redox conditions are suggestive of "hot moments", short time periods of intense biogeochemical cycling. Although the metal concentrations and fluxes are specific to this site, the approaches for examining relationships between metals, oxygen concentrations and overall redox conditions can be applied by water utilities to improve water quality management of Fe and Mn.

Manganese-oxidizing bacteria form multiple cylindrospermopsin transformation products with reduced human liver cell toxicity

Cylindrospermopsin (CYN) is a toxic alkaloid highly persistent in aquatic environments. Biological removal of CYN was described previously. However, no transformation products formed by biological processes could be identified so far. Here, we describe that various manganese-oxidizing bacteria (MOB) transform CYN completely at an initial mean concentration of 7 mg L^-1 (17 μM) within 3 to 34 days. Regardless of the strain, and transformation rate, transformation of CYN by MOB led to the same seven transformation products identified by mass spectrometry, which suggests that the removal of CYN by MOB follows a similar mechanism. Oxidation was the main transformation process, and the uracil moiety was the most susceptible part of the CYN molecule. In vitro cytotoxicity tests with the transformation products of CYN formed by one of the tested strains against the two human liver cell lines HepG2 and HepaRG, revealed that the transformation products were substantially less toxic than pure CYN for both cell lines. The results suggest that incubation with MOB might be an option for water treatment to remove CYN and may allow more detailed studies on the fate of CYN in the environment.

A manganese-oxidizing bacterial consortium and its biogenic Mn oxides for dye decolorization and heavy metal adsorption

Manganese (Mn) contamination is a common environmental problem in the world and manganese oxidizing bacteria (MOB) play important roles in bioremediation of heavy metal and organic pollution. In this study, a novel MOB consortium AS containing core microbes of Sphingobacterium and Bacillus was acclimated from Mn-contaminated rivulet sediments. The MOB consortium AS presented good Mn(II) removal performance under 500-10,000 mg/L Mn(II), with Mn(II) removal capacities ranging from 481 to 3478 mg/L. In coexistence systems of Mn(II) and Fe(II), Ni(II), Cu(II), and Zn(II), the MOB consortium AS removed 98%, 91%, 99%, and 76% of Mn(II), respectively. Additionally, the MOB consortium AS could utilize multiple carbon sources (e.g., Chitosan, β-Cyclodextrin, and Phenanthrene) to remove Mn(II), with Mn(II) removal efficiencies ranging from 11% to 97%. Meanwhile, XRD, XPS, FTIR, SEM, and EDS analyses reflected that biogenic Mn oxides (bio-MnOx-C) contained C, O, Mn (Mn(II) and Mn(IV)) and embodied in rhodochrosite and birnessite. The bio-MnOx-C exhibited second-order kinetic reaction for removal of dye, with corresponding decolorization capacities of 22.0 mg/g for methylene blue and 23.8 mg/g for crystal violet. In addition, bio-MnOx-C showed adsorption capacities of 159.0 mg/g for Cu(II), 130.7 mg/g for Zn(II), and 123.3 mg/g for Pb(II). Overall, this study illustrates consortium AS and bio-MnOx-C have great potentials in remediation of pollution caused by heavy metals and organic pollutants.

Bacterial chemolithoautotrophy via manganese oxidation

Manganese is among Earth’s most abundant elements. Its oxidation had long been theorized¹, yet undemonstrated^2–4, to fuel chemolithoautotrophic microbial growth. Here, an enrichment culture exhibiting Mn(II)-oxidation-dependent, exponential growth was refined to a two species co-culture. Oxidation required viable bacteria at permissive temperatures, resulting in the generation of small Mn oxide nodules to which the cells associated. The majority member of the culture, ‘Candidatus Manganitrophus noduliformans’, affiliates within phylum Nitrospirae (Nitrospirota) but is distantly related to known Nitrospira and Leptospirillum species. The minority member has been isolated, but does not oxidise Mn(II) alone. Stable isotope probing revealed Mn(II)-oxidation-dependent, ¹³CO₂-fixation into cellular biomass. Transcriptomics reveals candidate pathways for coupling extracellular manganese oxidation to aerobic energy conservation and to autotrophic CO₂-fixation. These findings expand the known diversity of inorganic metabolisms supporting life, while completing a biogeochemical energy cycle for manganese^5,6, one that may interface with other major global elemental cycles.

Molecular Cloning and Heterologous Expression of Manganese(II)-Oxidizing Enzyme from Acremonium strictum Strain KR21-2

Diverse ascomycete fungi oxidize manganese(II) [Mn(II)] and produce Mn(III, IV) oxides in terrestrial and freshwater environments. Although multicopper oxidase (MCO) is considered to be a key catalyst in mediating Mn(II) oxidation in ascomycetes, the responsible gene and its product have not been identified. In this study, a gene, named mco1, encoding Mn(II)-oxidizing MCO from Acremonium strictum strain KR21-2 was cloned and heterologously expressed in the methylotrophic yeast Pichia pastoris. Based on the phylogenetic relationship, similarity of putative copper-binding motifs, and homology modeling, the gene product Mco1 was assigned to a bilirubin oxidase. Mature Mco1 was predicted to be composed of 565 amino acids with a molecular mass of 64.0 kDa. The recombinant enzyme oxidized Mn(II) to yield spherical Mn oxides, several micrometers in diameter. Zinc(II) ions added to the reaction mixture were incorporated by the Mn oxides at a Zn/Mn molar ratio of 0.36. The results suggested that Mco1 facilitates the growth of the micrometer-sized Mn oxides and affects metal sequestration through Mn(II) oxidation. This is the first report on heterologous expression and identification of the Mn(II) oxidase enzyme in Mn(II)-oxidizing ascomycetes. The cell-free, homogenous catalytic system with recombinant Mco1 could be useful for understanding Mn biomineralization by ascomycetes and the sequestration of metal ions in the environment

Dynamics of major and trace elements during seawater intrusion in a coastal sedimentary aquifer impacted by anthropogenic activities

This study analyzed the dynamics of major ions and trace elements along the groundwater flow path of the coastal sedimentary Todos Santos aquifer in Baja California Sur, Mexico, moderately impacted by anthropogenic activities. The results indicate that the elements Ca²⁺, Mg²⁺, Ba²⁺, Sr²⁺ and Li⁺ are mobilized from the aquifer matrix during seawater intrusion, whereas the alkali-elements Na⁺, K⁺ and Rb⁺ are removed from solution, possibly due to cationic exchange process. The anions HCO^3- and SO₄^2- and the elements I and B are mobilized due to carbonate mineral weathering, whereas dissolved silica and the halides Br^- and F^- behave conservatively during salinization. Groundwater NO₃^- is provided by sewage infiltration. Regarding trace elements behavior, we identify three groups: i) elements that are mobilized during saline intrusion (Fe, Co, V, Se, Re), ii) elements revealing low or no mobilization (Mo, Ni, Cr, Ta, W) and iii) elements that show an undefined tendency (U, As, Ge, Sb, Cu, Mn). The U and NO₃^- levels in groundwater should be considered carefully because several wells have concentrations close to the permissible levels. This study may be useful as reference for knowing the possible effect of salinization in coastal aquifers under sea level rise scenarios driven by climate change.

Multiple organic substrates support Mn(II) removal with enrichment of Mn(II)-oxidizing bacteria

Three different organic substrates, K-medium, sterilized activated sludge (SAS), and methanol, were examined for utility as substrates for enriching manganese-oxidizing bacteria (MnOB) in an open bioreactor. The differences in Mn(II) oxidation performance between the substrates were investigated using three down-flow hanging sponge (DHS) reactors continuously treating artificial Mn(II)-containing water over 131 days. The results revealed that all three substrates were useful for enriching MnOB. Surprisingly, we observed only slight differences in Mn(II) removal between the substrates. The highest Mn(II) removal rate for the SAS-supplied reactor was 0.41 kg Mn⋅m^-3⋅d^-1, which was greater than that of K-medium, although the SAS performance was unstable. In contrast, the methanol-supplied reactor had more stable performance and the highest Mn(II) removal rate. We conclude that multiple genera of Comamonas, Pseudomonas, Mycobacterium, Nocardia and Hyphomicrobium play a role in Mn(II) oxidation and that their relative predominance was dependent on the substrate. Moreover, the initial inclusion of abiotic-MnO₂ in the reactors promoted early MnOB enrichment.

Microbial communities and biogenic Mn-oxides in an on-site biofiltration system for cold Fe-(II)- and Mn(II)-rich groundwater treatment

This study investigated relationships between microbial communities, groundwater chemistry, and geochemical and mineralogical characteristics in field-aged biofilter media from a two-stage, pilot-scale, flow-through biofiltration unit designed to remove Fe(II) and Mn(II) from cold groundwater (8 to 15 °C). High-throughput 16S rRNA gene amplicon sequencing of influent groundwater and biofilter samples (solids, effluents, and backwash water) revealed significant differences in the groundwater, Fe filter, and Mn filter communities. These community differences reflect conditions in each filter that select for populations that biologically oxidize Fe(II) and Mn(II) in the two filters, respectively. Genera identified in both filters included relatives of known Fe(II)-oxidizing bacteria (FeOB), Mn(II)-oxidizing bacteria (MnOB), and ammonia-oxidizing bacteria (AOB). Relatives of AOB and nitrite-oxidizing bacteria were abundant in sequencing reads from both filters. Relatives of FeOB in class Betaproteobacteria dominated the Fe filter. Taxa related to Mn-oxidizing organisms were minor members of the Mn-filter communities; intriguingly, while Alphaproteobacteria dominated (40 ± 10% of sequencing reads) the Mn filter community, these Alphaproteobacteria did not classify as known MnOB. Isolates from Fe and Mn filter backwash enrichment studies provide insight on the identity of MnOB in this system. Novel putative MnOB isolates included Azospirillum sp. CDMB, Solimonas soli CDMK, and Paenibacillus sp. CDME. The isolate Hydrogenophaga strain CDMN can oxidize Mn(II) at 8 °C; this known FeOB is likely capable of Mn(II) oxidation in this system. Synchrotron-based X-ray near-edge spectroscopy (XANES) coupled with electron paramagnetic resonance (EPR) revealed the dominant Mn-oxide that formed was biogenic birnessite. Co-existence of amorphous and crystallized Mn-oxide surface morphologies on the Mn-filter media suggest occurrence of both biological and autocatalytic Mn(II) oxidation in the biofilter. This study provides evidence that biofiltration is a viable approach to remove iron, manganese, and ammonia in cold groundwater systems, and that mineralogical and microbiological approaches can be used to monitor biofiltration system efficacy and function.

A Fungal-Mediated Cryptic Selenium Cycle Linked to Manganese Biogeochemistry

Selenium (Se) redox chemistry is a determining factor for its environmental toxicity and mobility. Currently, millions of people are impacted by Se deficiency or toxicity, and in geologic history, several mass extinctions have been linked to extreme Se deficiency. Importantly, microbial activity and interactions with other biogeochemically active elements can drastically alter Se oxidation state and form, impacting its bioavailability. Here, we use wet geochemistry, spectroscopy, and electron microscopy to identify a cryptic, or hidden, Se cycle involving the reoxidation of biogenic volatile Se compounds in the presence of biogenic manganese [Mn(III, IV)] oxides and oxyhydroxides (hereafter referred to as "Mn oxides"). Using two common environmental Ascomycete fungi, Paraconiothyrium sporulosum and Stagonospora sp., we observed that aerobic Se(IV and VI) bioreduction to Se(0) and Se(-II) occurs simultaneously alongside the opposite redox biomineralization process of mycogenic Mn(II) oxidation to Mn oxides. Selenium bioreduction produced stable Se(0) nanoparticles and organoselenium compounds. However, mycogenic Mn oxides rapidly oxidized volatile Se products, recycling these compounds back to soluble forms. Given their abundance in natural systems, biogenic Mn oxides likely play an important role mediating Se biogeochemistry. Elucidating this cryptic Se cycle is essential for understanding and predicting Se behavior in diverse environmental systems.

Multicopper oxidase of Acinetobacter baumannii: Assessing its role in metal homeostasis, stress management and virulence

A putative multicopper oxidase, encoded as CopA in the proteome of Acinetobacter baumannii 19606, and designated as AbMCO, was expressed heterologously in E. coli (pET-28a) and purified by Ni-NTA affinity chromatography. The purified AbMCO exhibited in vitro oxidase activities upon exogenous addition of ≥1 μM copper ions. Kinetic studies revealed its phenol oxidase activity as it could catalyze the oxidation of substrates viz. 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulphonic acid) (ABTS), guaiacol, pyrogallol and catechol. Additionally, AbMCO displayed siderophore oxidase activity which depicted its role in metal homeostasis and protection from the toxic redox states of copper and iron. Importantly, expression of abMCO increased manifold upon challenge with high concentrations of copper sulphate (CuSO₄, 1.5 mM) and sodium chloride (NaCl, 700 mM) which suggested its protective role in stress adaptation and management. Intra-macrophage assay of abMCO-expressing and abMCO-non expressing cells depicted no significant change in the survival rate of A. baumannii inside the macrophages. These findings indicate that A. baumannii encodes a multicopper oxidase, conferring copper tolerance and survival under stress conditions but had no role in virulence of this pathogen.

The spatial variations of correlation between microbial diversity and groundwater quality derived from a riverbank filtration site, northeast China

To identify the relationship between microbial communities and groundwater quality parameters, especially typical groundwater contaminants including ammonium (NH₄⁺), iron (Fe²⁺), and manganese (Mn²⁺), groundwater samples and aquifer media were collected from a riverbank filtration (RBF) site in Harbin city, northeast China. The structures of the microbial communities of aquifer media at different depths were illustrated through 16S rRNA sequencing using the Illumina MiSeq platform, and the correlation between microbial communities and water quality parameters was quantitatively demonstrated by redundancy analysis (RDA). The results revealed that the diversity of microbial communities decreased along the groundwater flow path at the south bank of Songhua river. The richness and diversity in the unsaturated zone (0-5 m) were significantly higher than those in the saturated zone (5-50 m) because of physiochemical properties of aquifer media and the redox environment in the RBF system. Core taxa, which were significantly related to the biotransformation behavior of iron, manganese, and ammonium, were Pseudomonas, Acinetobacter, Ochrobactrum, Sphingobium, and Sphingomonas. RDA results indicated that the critical physiochemical parameters that significantly influenced the composition of microbial communities were different in the saturated and unsaturated zones, and the total organic carbon (TOC), electrical conductivity (EC), nitrate (NO₃^-), and manganese (Mn²⁺) levels were the four principal factors affecting the function and composition of microbial communities in the whole RBF system. Proteobacteria, Sphingomonadales, and Sphingobium were the dominant bacteria at the phylum, order, and genus levels with 39.8%, 59.2%, and 65.3% contribution to the overall groundwater quality, respectively. The results obtained from this study should improve the understanding of the relationship between the structure of microbial communities (especially, bacteria related to the biotransformation of NH₄⁺, Fe²⁺, and Mn²⁺) and physiochemical parameters.

Modern precipitation of hydrogenetic ferromanganese minerals during on-site 15-year exposure tests

Redox-sensitive metallic elements, Mn and Fe, are oxidized in deep sea waters and form abundant ferromanganese crusts and nodules on the world’s ocean floors at ultraslow rates of growth. This process of oxidation and the mechanism of precipitation are yet unknown. In this paper, the results of the first successful, long-term, on-site experiment of mineral precipitation that ascertains modern, ongoing hydrogenetic deposition of oxide materials from normal seawaters at water depths of 900–4500 m of geologically active and inactive environments are presented. We succeeded in the in-situ precipitation experiment on the sea floor and characterized the precipitates using high-resolution and submicron-scale chemical, mineralogical, and structural analyses. The installed artificial plates of glass, ceramics, and plastic yielded spread-out particles of sizes varying from one to a few micrometers in diameter, of coccoid-like irregular shapes, with a maximum of 1,000–10,000 individual particles/mm²/year after 12–15 years of exposure. The results indicated a continuous substantial growth of the hydrogenetic minerals if both Mn and Fe are supplied to the bottom waters. The mineralogical, chemical, and structural properties of the precipitates are similar to those of the natural precipitates on the seabed that are made up of hydrogenetic ferromanganese crusts and nodules, together with settling sediments, suspended hydrothermal particles, or microbial precipitates from cultivated Mn-oxidizing bacteria. Our work presents new realistic insight into proposed genetic models of marine hydrogenetic ferromanganese deposits in modern diverse ocean environments.

Manganese-oxidizing bacteria isolated from natural and technical systems remove cylindrospermopsin

The cyanotoxin cylindrospermopsin was discovered during a drinking water-related outbreak of human poisoning in 1979. Knowledge about the degradation of cylindrospermopsin in waterbodies is limited. So far, only few cylindrospermopsin-removing bacteria have been described. Manganese-oxidizing bacteria remove a variety of organic compounds. However, this has not been assessed for cyanotoxins yet. We investigated cylindrospermopsin removal by manganese-oxidizing bacteria, isolated from natural and technical systems. Cylindrospermopsin removal was evaluated under different conditions. We analysed the correlation between the amount of oxidized manganese and the cylindrospermopsin removal, as well as the removal of cylindrospermopsin by sterile biogenic oxides. Removal rates in the range of 0.4-37.0 μg L^-1 day^-1 were observed. When MnCO₃ was in the media Pseudomonas sp. OF001 removed ∼100% of cylindrospermopsin in 3 days, Comamonadaceae bacterium A210 removed ∼100% within 14 days, and Ideonella sp. A288 and A226 removed 65% and 80% within 28 days, respectively. In the absence of Mn²⁺, strain A288 did not remove cylindrospermopsin, while the other strains removed 5-16%. The amount of manganese oxidized by the strains during the experiment did not correlate with the amount of cylindrospermopsin removed. However, the mere oxidation of Mn²⁺ was indispensable for cylindrospermopsin removal. Cylindrospermopsin removal ranging from 0 to 24% by sterile biogenic oxides was observed. Considering the efficient removal of cylindrospermopsin by the tested strains, manganese-oxidizing bacteria might play an important role in cylindrospermopsin removal in the environment. Besides, manganese-oxidizing bacteria could be promising candidates for biotechnological applications for cylindrospermopsin removal in water treatment plants.