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Voiniciuc C. Modern mannan: a hemicellulose's journey. THE NEW PHYTOLOGIST 2022; 234:1175-1184. [PMID: 35285041 DOI: 10.1111/nph.18091] [Citation(s) in RCA: 18] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Accepted: 03/06/2022] [Indexed: 06/14/2023]
Abstract
Hemicellulosic polysaccharides built of β-1,4-linked mannose units have been found throughout the plant kingdom and have numerous industrial applications. Here, I review recent advances in the biosynthesis and modification of plant β-mannans. These matrix polymers can associate with cellulose bundles to impact the mechanical properties of plant fibers or biocomposites. In certain algae, mannan microfibrils even replace cellulose as the dominant structural component of the cell wall. Conversely, patterned galactoglucomannan found in Arabidopsis thaliana seed mucilage significantly modulates cell wall architecture and abiotic stress tolerance despite its relatively low content. I also discuss the subcellular requirements for β-mannan biosynthesis, the increasing number of carbohydrate-active enzymes involved in this process, and the players that continue to be puzzling. I discuss how cellulose synthase-like enzymes elongate (gluco)mannans in orthogonal hosts and highlight the discoveries of plant enzymes that add specific galactosyl or acetyl decorations. Hydrolytic enzymes such as endo-β-1,4-mannanases have recently been involved in a wide range of biological contexts including seed germination, wood formation, heavy metal tolerance, and defense responses. Synthetic biology tools now provide faster tracks to modulate the increasingly-relevant mannan structures for improved plant traits and bioproducts.
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Affiliation(s)
- Cătălin Voiniciuc
- Independent Junior Research Group-Designer Glycans, Leibniz Institute of Plant Biochemistry, Halle (Saale), 06120, Germany
- Horticultural Sciences Department, University of Florida, Gainesville, FL, 32611, USA
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52
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Nitro-Oxidation Process for Fabrication of Efficient Bioadsorbent from Lignocellulosic Biomass by Combined Liquid-Gas Phase Treatment. CARBOHYDRATE POLYMER TECHNOLOGIES AND APPLICATIONS 2022. [DOI: 10.1016/j.carpta.2022.100219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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53
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Hu X, Wang H, Liu Q, Liao Y, Wang C, Ma L. Comparative study on the hydrogenolysis performance of solid residues from different bamboo pretreatments. BIORESOURCE TECHNOLOGY 2022; 352:127095. [PMID: 35367326 DOI: 10.1016/j.biortech.2022.127095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 03/28/2022] [Accepted: 03/29/2022] [Indexed: 06/14/2023]
Abstract
Both alkaline organosolv and formaldehyde stabilization pretreatment can yield high-quality lignin by preventing condensation. For the hydrogenolysis of the pretreated solid residues, the highest yield of C2-C4 chemicals was 66.8% under alkaline organosolv pretreatment for 60 min. Specifically, the crimped fibers and residual lignin and hemicellulose increased the surface roughness of the residue by 40.6%, the crystallinity index decreased to 44.4%, and the crystal size was reduced to 2.15 nm, which in turn promoted hydrogenolysis of the residue. However, the increase of crystallinity and crystal size and the decrease in surface roughness of the formaldehyde stabilization pretreatment residue greatly hindered the conversion of polysaccharides. In addition, residual formaldehyde on the residue may also inhibit catalyst activity. Overall, this study provides novel perspectives on the full utilization of biomass, as well as new insights into the conversion of polysaccharides.
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Affiliation(s)
- Xiaohong Hu
- Guangzhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Key Laboratory of Renewable Energy, Guangdong Provincial Key Laboratory of New and Renewable Energy Research and Development, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Haiyong Wang
- Guangzhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Key Laboratory of Renewable Energy, Guangdong Provincial Key Laboratory of New and Renewable Energy Research and Development, Guangzhou 510640, China
| | - Qiying Liu
- Guangzhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Key Laboratory of Renewable Energy, Guangdong Provincial Key Laboratory of New and Renewable Energy Research and Development, Guangzhou 510640, China
| | - Yuhe Liao
- Guangzhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Key Laboratory of Renewable Energy, Guangdong Provincial Key Laboratory of New and Renewable Energy Research and Development, Guangzhou 510640, China
| | - Chenguang Wang
- Guangzhou Institute of Energy Conversion, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Key Laboratory of Renewable Energy, Guangdong Provincial Key Laboratory of New and Renewable Energy Research and Development, Guangzhou 510640, China
| | - Longlong Ma
- Key Laboratory of Energy Thermal Conversion and Control of Ministry of Education, School of Energy and Environment, Southeast University, Nanjing 210096, China.
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54
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Nanostructural Changes Correlated to Decay Resistance of Chemically Modified Wood Fibers. FIBERS 2022. [DOI: 10.3390/fib10050040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Reactive chemical modifications have been shown to impart decay resistance to wood. These modifications change hydroxyl availability, water uptake, surface energy, and the nanostructure of wood. Because fungal action occurs on the micro and nano scale, further investigation into the nanostructure may lead to better strategies to prevent fungal decay. The aim of this article is to introduce our findings using small angle neutron scattering (SANS) to probe the effects of chemical modifications on the nanostructure of wood fibers. Southern pine wood fiber samples were chemically modified to various weight percentage gains (WPG) using propylene oxide (PO), butylene oxide (BO), or acetic anhydride (AA). After modification, the samples were water leached for two weeks to remove any unreacted reagents, homopolymers or by-products and then the equilibrium moisture content (EMC) was determined. Laboratory soil-block-decay evaluations against the brown rot fungus Gloeophyllum trabeum were performed to determine weight loss and decay resistance of the modifications. To assist in understanding the mechanism behind fungal decay resistance, SANS was used to study samples that were fully immersed in deuterium oxide (D2O). These measurements revealed that modifying the fibers led to differences in the swollen wood nanostructure compared to unmodified wood fibers. Moreover, the modifications led to differences in the nanoscale features observed in samples that were exposed to brown rot fungal attack compared to unmodified wood fibers and solid wood blocks modified with alkylene oxides.
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55
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Dora S, Terrett OM, Sánchez-Rodríguez C. Plant-microbe interactions in the apoplast: Communication at the plant cell wall. THE PLANT CELL 2022; 34:1532-1550. [PMID: 35157079 PMCID: PMC9048882 DOI: 10.1093/plcell/koac040] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Accepted: 01/29/2022] [Indexed: 05/20/2023]
Abstract
The apoplast is a continuous plant compartment that connects cells between tissues and organs and is one of the first sites of interaction between plants and microbes. The plant cell wall occupies most of the apoplast and is composed of polysaccharides and associated proteins and ions. This dynamic part of the cell constitutes an essential physical barrier and a source of nutrients for the microbe. At the same time, the plant cell wall serves important functions in the interkingdom detection, recognition, and response to other organisms. Thus, both plant and microbe modify the plant cell wall and its environment in versatile ways to benefit from the interaction. We discuss here crucial processes occurring at the plant cell wall during the contact and communication between microbe and plant. Finally, we argue that these local and dynamic changes need to be considered to fully understand plant-microbe interactions.
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56
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Petrova A, Sibgatullina G, Gorshkova T, Kozlova L. Dynamics of cell wall polysaccharides during the elongation growth of rye primary roots. PLANTA 2022; 255:108. [PMID: 35449484 DOI: 10.1007/s00425-022-03887-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Accepted: 03/28/2022] [Indexed: 06/14/2023]
Abstract
In cells of growing rye roots, xyloglucans and homogalacturonans demonstrate developmental stage specificity, while different xylans have tissue specificity. Mannans, arabinans and galactans are also detected within the protoplast. Mannans form films on sections of fresh material. The primary cell walls of plants represent supramolecular exocellular structures that are mainly composed of polysaccharides. Cell wall properties and architecture differ between species and across tissues within a species. We revised the distribution of cell wall polysaccharides and their dynamics during elongation growth and histogenesis in rye roots using nonfixed material and the spectrum of antibodies. Rye is a member of the Poaceae family and thus has so-called type II primary cell walls, which are supposed to be low in pectins and xyloglucans and instead have arabinoxylans and mixed-linkage glucans. However, rye cell walls at the earliest stages of cell development were enriched with the epitopes of xyloglucans and homogalacturonans. Mixed-linkage glucan, which is often considered an elongation growth-specific polysaccharide in plants with type II cell walls, did not display such dynamics in rye roots. The cessation of elongation growth and even the emergence of root hairs were not accompanied by the disappearance of mixed-linkage glucans from cell walls. The diversity of xylan motifs recognized by different antibodies was minimal in the meristem zone of rye roots, but this diversity increased and showed tissue specificity during root growth. Antibodies specific for xyloglucans, galactans, arabinans and mannans bound the cell content. When rye root cells were cut, the epitopes of xyloglucans, galactans and arabinans remained within the cell content, while mannans developed net-like or film-like structures on the surface of sections.
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Affiliation(s)
- Anna Petrova
- Laboratory of Plant Cell Growth Mechanisms, Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, Lobachevsky str., 2/31, 420111, Kazan, Russia
| | - Gusel Sibgatullina
- The Laboratory of Biophysics of Synaptic Processes, Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, Lobachevsky str., 2/31, 420111, Kazan, Russia
| | - Tatyana Gorshkova
- Laboratory of Plant Cell Growth Mechanisms, Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, Lobachevsky str., 2/31, 420111, Kazan, Russia
| | - Liudmila Kozlova
- Laboratory of Plant Cell Growth Mechanisms, Kazan Institute of Biochemistry and Biophysics, FRC Kazan Scientific Center of RAS, Lobachevsky str., 2/31, 420111, Kazan, Russia.
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57
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Aguilera-Segura SM, Dragún D, Gaumard R, Di Renzo F, Ondík IM, Mineva T. Thermal fluctuation and conformational effects on NMR parameters in β-O-4 lignin dimers from QM/MM and machine-learning approaches. Phys Chem Chem Phys 2022; 24:8820-8831. [PMID: 35352736 DOI: 10.1039/d2cp00361a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Advanced solid-state and liquid-state nuclear magnetic resonance (NMR) approaches have enabled high throughput information about functional groups and types of bonding in a variety of lignin fragments from degradation processes and laboratory synthesis. The use of quantum chemical (QM) methods may provide detailed insight into the relationships between NMR parameters and specific lignin conformations and their dynamics, whereas a rapid prediction of NMR properties could be achieved by combining QM with machine-learning (ML) approaches. In this study, we present the effect of conformations of β-O-4 linked lignin guaiacyl dimers on 13C and 1H chemical shifts while considering the thermal fluctuations of the guaiacyl dimers in water, ethanol and acetonitrile, as well as their binary 75 wt% aqueous solutions. Molecular dynamics and QM/MM simulations were used to describe the dynamics of guaiacyl dimers. The isotropic shielding of the majority of the carbon nuclei was found to be less sensitive toward a specific conformation than that of the hydrogen nuclei. The largest 1H downfield shifts of 4-6 ppm were established in the hydroxy groups and the rings in the presence of organic solvent components. The Gradient Boosting Regressor model has been trained on 60% of the chemical environments in the dynamics trajectories with the NMR isotropic shielding (σiso), computed with density-functional theory, for lignin atoms. The high efficiency of this machine-learning model in predicting the remaining 40% σiso(13C) and σiso(1H) values was established.
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Affiliation(s)
| | - Dominik Dragún
- FIIT STU in Bratislava, Ilkovičova 2, 842 16 Bratislava, Slovakia
| | - Robin Gaumard
- ICGM, Univ Montpellier, CNRS, ENSCM, Montpellier, France.
| | | | - Irina Malkin Ondík
- FIIT STU in Bratislava, Ilkovičova 2, 842 16 Bratislava, Slovakia.,MicroStep-MIS spol. s.r.o. Čavojského 1, 84104 Bratislava, Slovakia
| | - Tzonka Mineva
- ICGM, Univ Montpellier, CNRS, ENSCM, Montpellier, France.
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58
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Mechanism and biomass association of glucuronoyl esterase: an α/β hydrolase with potential in biomass conversion. Nat Commun 2022; 13:1449. [PMID: 35304453 PMCID: PMC8933493 DOI: 10.1038/s41467-022-28938-w] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 02/11/2022] [Indexed: 12/02/2022] Open
Abstract
Glucuronoyl esterases (GEs) are α/β serine hydrolases and a relatively new addition in the toolbox to reduce the recalcitrance of lignocellulose, the biggest obstacle in cost-effective utilization of this important renewable resource. While biochemical and structural characterization of GEs have progressed greatly recently, there have yet been no mechanistic studies shedding light onto the rate-limiting steps relevant for biomass conversion. The bacterial GE OtCE15A possesses a classical yet distinctive catalytic machinery, with easily identifiable catalytic Ser/His completed by two acidic residues (Glu and Asp) rather than one as in the classical triad, and an Arg side chain participating in the oxyanion hole. By QM/MM calculations, we identified deacylation as the decisive step in catalysis, and quantified the role of Asp, Glu and Arg, showing the latter to be particularly important. The results agree well with experimental and structural data. We further calculated the free-energy barrier of post-catalysis dissociation from a complex natural substrate, suggesting that in industrial settings non-catalytic processes may constitute the rate-limiting step, and pointing to future directions for enzyme engineering in biomass utilization. Zong and coworkers combine computational and experimental methods to decipher in detail the mechanism of action of glucuronoyl esterases, enzymes with significant biotechnological potential for decoupling lignin from polysaccharides in biomass.
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59
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Chemical Characteristics of Wood Cell Wall with an Emphasis on Ultrastructure: A Mini-Review. FORESTS 2022. [DOI: 10.3390/f13030439] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Wood is complex in its chemical composition that has an important influence on its chemical behavior and mechanical strength. The complexity is reflected in the ultrastructure of the wood cell wall. In particular, the concentration of main components (cellulose, hemicelluloses and lignin) changes depending on many factors such as the different type or parts of wood, and varies in different cell wall layers. From an ultrastructural standpoint, we describe the current level of knowledge about chemical characteristics of the wood cell walls. The information of distribution of main components in the cell walls of normal wood, reaction wood and water-logged archaeological wood, the cellulose microfibrils orientation, and the interactions between main components were presented based on the use of advanced techniques including transmission electron microscopy, scanning electron microscopy, spectral imaging and nuclear magnetic resonance. In addition, the chemical changes of the wood cell wall during pretreatment are discussed. This mini-review not only provides a better understanding of wood chemistry, but also brings new insights into cell wall recalcitrance.
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60
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Dutta K, Singh A. Chemical modification of lignin and thereafter grafting with lactic acid for flexible polymer film preparation. J Appl Polym Sci 2022. [DOI: 10.1002/app.52320] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Koushik Dutta
- Coal and Energy Group, Materials Sciences and Technology Division CSIR‐North East Institute of Science and Technology Jorhat Assam India
- Acadmey of Scientific and Innovative Research (AcSIR) Ghaziabad India
| | - Ajit Singh
- Coal and Energy Group, Materials Sciences and Technology Division CSIR‐North East Institute of Science and Technology Jorhat Assam India
- Acadmey of Scientific and Innovative Research (AcSIR) Ghaziabad India
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61
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Solid State NMR a Powerful Technique for Investigating Sustainable/Renewable Cellulose-Based Materials. Polymers (Basel) 2022; 14:polym14051049. [PMID: 35267872 PMCID: PMC8914817 DOI: 10.3390/polym14051049] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2022] [Revised: 02/24/2022] [Accepted: 03/02/2022] [Indexed: 01/27/2023] Open
Abstract
Solid state nuclear magnetic resonance (ssNMR) is a powerful and attractive characterization method for obtaining insights into the chemical structure and dynamics of a wide range of materials. Current interest in cellulose-based materials, as sustainable and renewable natural polymer products, requires deep investigation and analysis of the chemical structure, molecular packing, end chain motion, functional modification, and solvent–matrix interactions, which strongly dictate the final product properties and tailor their end applications. In comparison to other spectroscopic techniques, on an atomic level, ssNMR is considered more advanced, especially in the structural analysis of cellulose-based materials; however, due to a dearth in the availability of a broad range of pulse sequences, and time consuming experiments, its capabilities are underestimated. This critical review article presents the comprehensive and up-to-date work done using ssNMR, including the most advanced NMR strategies used to overcome and resolve the structural difficulties present in different types of cellulose-based materials.
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62
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Heinonen E, Henriksson G, Lindström ME, Vilaplana F, Wohlert J. Xylan adsorption on cellulose: Preferred alignment and local surface immobilizing effect. Carbohydr Polym 2022; 285:119221. [DOI: 10.1016/j.carbpol.2022.119221] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Revised: 01/31/2022] [Accepted: 02/01/2022] [Indexed: 12/22/2022]
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63
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Carbohydrate-aromatic interface and molecular architecture of lignocellulose. Nat Commun 2022; 13:538. [PMID: 35087039 PMCID: PMC8795156 DOI: 10.1038/s41467-022-28165-3] [Citation(s) in RCA: 66] [Impact Index Per Article: 33.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Accepted: 01/10/2022] [Indexed: 12/12/2022] Open
Abstract
Plant cell walls constitute the majority of lignocellulosic biomass and serve as a renewable resource of biomaterials and biofuel. Extensive interactions between polysaccharides and the aromatic polymer lignin make lignocellulose recalcitrant to enzymatic hydrolysis, but this polymer network remains poorly understood. Here we interrogate the nanoscale assembly of lignocellulosic components in plant stems using solid-state nuclear magnetic resonance and dynamic nuclear polarization approaches. We show that the extent of glycan-aromatic association increases sequentially across grasses, hardwoods, and softwoods. Lignin principally packs with the xylan in a non-flat conformation via non-covalent interactions and partially binds the junction of flat-ribbon xylan and cellulose surface as a secondary site. All molecules are homogeneously mixed in softwoods; this unique feature enables water retention even around the hydrophobic aromatics. These findings unveil the principles of polymer interactions underlying the heterogeneous architecture of lignocellulose, which may guide the rational design of more digestible plants and more efficient biomass-conversion pathways. The plant biomass is a composite formed by a variety of polysaccharides and an aromatic polymer named lignin. Here, the authors use solid-state NMR spectroscopy to unveil the carbohydrate-aromatic interface that leads to the variable architecture of lignocellulose biomaterials.
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64
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Comparison of six lytic polysaccharide monooxygenases from Thermothielavioides terrestris shows that functional variation underlies the multiplicity of LPMO genes in filamentous fungi. Appl Environ Microbiol 2022; 88:e0009622. [PMID: 35080911 PMCID: PMC8939357 DOI: 10.1128/aem.00096-22] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Lytic polysaccharide monooxygenases (LPMOs) are mono-copper enzymes that oxidatively degrade various polysaccharides. Genes encoding LPMOs in the AA9 family are abundant in filamentous fungi while their multiplicity remains elusive. We describe a detailed functional characterization of six AA9 LPMOs from the ascomycetous fungus Thermothielavioides terrestris LPH172 (syn. Thielavia terrestris). These six LPMOs were shown to be upregulated during growth on different lignocellulosic substrates in our previous study. Here, we produced them heterologously in Pichia pastoris and tested their activity on various model and native plant cell wall substrates. All six T. terrestris AA9 (TtAA9) LPMOs produced hydrogen peroxide in the absence of polysaccharide substrate and displayed peroxidase-like activity on a model substrate, yet only five of them were active on selected cellulosic substrates. TtLPMO9A and TtLPMO9E were also active on birch acetylated glucuronoxylan, but only when the xylan was combined with phosphoric acid-swollen cellulose (PASC). Another of the six AA9s, TtLPMO9G, was active on spruce arabinoglucuronoxylan mixed with PASC. TtLPMO9A, TtLPMO9E, TtLPMO9G, and TtLPMO9T could degrade tamarind xyloglucan and, with the exception of TtLPMO9T, beechwood xylan when combined with PASC. Interestingly, none of the tested enzymes were active on wheat arabinoxylan, konjac glucomannan, acetylated spruce galactoglucomannan, or cellopentaose. Overall, these functional analyses support the hypothesis that the multiplicity of the fungal LPMO genes assessed in this study relates to the complex and recalcitrant structure of lignocellulosic biomass. Our study also highlights the importance of using native substrates in functional characterization of LPMOs, as we were able to demonstrate distinct, previously unreported xylan-degrading activities of AA9 LPMOs using such substrates. IMPORTANCE The discovery of LPMOs in 2010 has revolutionized the industrial biotechnology field, mainly by increasing the efficiency of cellulolytic enzyme cocktails. Nonetheless, the biological purpose of the multiplicity of LPMO-encoding genes in filamentous fungi has remained an open question. Here, we address this point by showing that six AA9 LPMOs from a single fungal strain have various substrate preferences and activities on tested cellulosic and hemicellulosic substrates, including several native xylan substrates. Importantly, several of these activities could only be detected when using copolymeric substrates that likely resemble plant cell walls more than single fractionated polysaccharides do. Our results suggest that LPMOs have evolved to contribute to the degradation of different complex structures in plant cell walls where different biomass polymers are closely associated. This knowledge together with the elucidated novel xylanolytic activities could aid in further optimization of enzymatic cocktails for efficient degradation of lignocellulosic substrates and more.
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65
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Munson CR, Gao Y, Mortimer JC, Murray DT. Solid-State Nuclear Magnetic Resonance as a Tool to Probe the Impact of Mechanical Preprocessing on the Structure and Arrangement of Plant Cell Wall Polymers. FRONTIERS IN PLANT SCIENCE 2022; 12:766506. [PMID: 35095947 PMCID: PMC8790750 DOI: 10.3389/fpls.2021.766506] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2021] [Accepted: 11/25/2021] [Indexed: 06/14/2023]
Abstract
Efficient separation of the plant cell wall polymers during lignocellulose processing has been historically challenging due to insolubility of the polymers and their propensity for recalcitrant reassembly. Methods, such as "lignin first" extraction techniques, have advanced efficient biomass use, but the molecular mechanisms for recalcitrance remain enigmatic. Here, we discuss how solid-state Nuclear Magnetic Resonance (NMR) approaches report on the 3D organization of cellulose, xylan, and lignin in the plant cell wall. Recent results illustrate that the organization of these polymers varies across biomass sources and sample preparation methods, with even minimal physical processing causing significant effects. These structural differences contribute to variable extraction efficiencies for bioproducts after downstream processing. We propose that solid-state NMR methods can be applied to follow biomass processing, providing an understanding of the polymer rearrangements that can lead to poor yields for the desired bioproducts. The utility of the technique is illustrated for mechanical processing using lab-scale vibratory ball milling of Sorghum bicolor.
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Affiliation(s)
- Coyla R. Munson
- Department of Chemistry, University of California, Davis, Davis, CA, United States
| | - Yu Gao
- Joint BioEnergy Institute, Emeryville, CA, United States
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
| | - Jenny C. Mortimer
- Joint BioEnergy Institute, Emeryville, CA, United States
- Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States
- School of Agriculture, Food and Wine, Waite Research Institute, University of Adelaide, Glen Osmond, SA, Australia
| | - Dylan T. Murray
- Department of Chemistry, University of California, Davis, Davis, CA, United States
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66
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Ghassemi N, Poulhazan A, Deligey F, Mentink-Vigier F, Marcotte I, Wang T. Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants. Chem Rev 2021; 122:10036-10086. [PMID: 34878762 DOI: 10.1021/acs.chemrev.1c00669] [Citation(s) in RCA: 55] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Extracellular matrixes (ECMs), such as the cell walls and biofilms, are important for supporting cell integrity and function and regulating intercellular communication. These biomaterials are also of significant interest to the production of biofuels and the development of antimicrobial treatment. Solid-state nuclear magnetic resonance (ssNMR) and magic-angle spinning-dynamic nuclear polarization (MAS-DNP) are uniquely powerful for understanding the conformational structure, dynamical characteristics, and supramolecular assemblies of carbohydrates and other biomolecules in ECMs. This review highlights the recent high-resolution investigations of intact ECMs and native cells in many organisms spanning across plants, bacteria, fungi, and algae. We spotlight the structural principles identified in ECMs, discuss the current technical limitation and underexplored biochemical topics, and point out the promising opportunities enabled by the recent advances of the rapidly evolving ssNMR technology.
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Affiliation(s)
- Nader Ghassemi
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - Alexandre Poulhazan
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States.,Department of Chemistry, Université du Québec à Montréal, Montreal H2X 2J6, Canada
| | - Fabien Deligey
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | | | - Isabelle Marcotte
- Department of Chemistry, Université du Québec à Montréal, Montreal H2X 2J6, Canada
| | - Tuo Wang
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
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67
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Quantifying Oxidation of Cellulose-Associated Glucuronoxylan by Two Lytic Polysaccharide Monooxygenases from Neurospora crassa. Appl Environ Microbiol 2021; 87:e0165221. [PMID: 34613755 PMCID: PMC8612270 DOI: 10.1128/aem.01652-21] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
Family AA9 lytic polysaccharide monooxygenases (LPMOs) are abundant in fungi, where they catalyze oxidative depolymerization of recalcitrant plant biomass. These AA9 LPMOs cleave cellulose and some also act on hemicelluloses, primarily other (substituted) β-(1→4)-glucans. Oxidative cleavage of xylan has been shown for only a few AA9 LPMOs, and it remains unclear whether this activity is a minor side reaction or primary function. Here, we show that Neurospora crassa LPMO9F (NcLPMO9F) and the phylogenetically related, hitherto uncharacterized NcLPMO9L from N. crassa are active on both cellulose and cellulose-associated glucuronoxylan but not on glucuronoxylan alone. A newly developed method for simultaneous quantification of xylan-derived and cellulose-derived oxidized products showed that NcLPMO9F preferentially cleaves xylan when acting on a cellulose–beechwood glucuronoxylan mixture, yielding about three times more xylan-derived than cellulose-derived oxidized products. Interestingly, under similar conditions, NcLPMO9L and the previously characterized McLPMO9H, from Malbranchea cinnamomea, showed different xylan-to-cellulose preferences, giving oxidized product ratios of about 0.5:1 and 1:1, respectively, indicative of functional variation among xylan-active LPMOs. Phylogenetic and structural analysis of xylan-active AA9 LPMOs led to the identification of characteristic structural features, including unique features that do not occur in phylogenetically remote AA9 LPMOs, such as four AA9 LPMOs whose lack of activity toward glucuronoxylan was demonstrated in the present study. Taken together, the results provide a path toward discovery of additional xylan-active LPMOs and show that the huge family of AA9 LPMOs has members that preferentially act on xylan. These findings shed new light on the biological role and industrial potential of these fascinating enzymes. IMPORTANCE Plant cell wall polysaccharides are highly resilient to depolymerization by hydrolytic enzymes, partly due to cellulose chains being tightly packed in microfibrils that are covered by hemicelluloses. Lytic polysaccharide monooxygenases (LPMOs) seem well suited to attack these resilient copolymeric structures, but the occurrence and importance of hemicellulolytic activity among LPMOs remain unclear. Here, we show that certain AA9 LPMOs preferentially cleave xylan when acting on a cellulose–glucuronoxylan mixture, and that this ability is the result of protein evolution that has resulted in a clade of AA9 LPMOs with specific structural features. Our findings strengthen the notion that the vast arsenal of AA9 LPMOs in certain fungal species provides functional versatility and that AA9 LPMOs may have evolved to promote oxidative depolymerization of a wide variety of recalcitrant, copolymeric plant polysaccharide structures. These findings have implications for understanding the biological roles and industrial potential of LPMOs.
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Poulhazan A, Dickwella Widanage MC, Muszyński A, Arnold AA, Warschawski DE, Azadi P, Marcotte I, Wang T. Identification and Quantification of Glycans in Whole Cells: Architecture of Microalgal Polysaccharides Described by Solid-State Nuclear Magnetic Resonance. J Am Chem Soc 2021; 143:19374-19388. [PMID: 34735142 PMCID: PMC8630702 DOI: 10.1021/jacs.1c07429] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Indexed: 12/15/2022]
Abstract
Microalgae are photosynthetic organisms widely distributed in nature and serve as a sustainable source of bioproducts. Their carbohydrate components are also promising candidates for bioenergy production and bioremediation, but the structural characterization of these heterogeneous polymers in cells remains a formidable problem. Here we present a widely applicable protocol for identifying and quantifying the glycan content using magic-angle-spinning (MAS) solid-state NMR (ssNMR) spectroscopy, with validation from glycosyl linkage and composition analysis deduced from mass-spectrometry (MS). Two-dimensional 13C-13C correlation ssNMR spectra of a uniformly 13C-labeled green microalga Parachlorella beijerinckii reveal that starch is the most abundant polysaccharide in a naturally cellulose-deficient strain, and this polymer adopts a well-organized and highly rigid structure in the cell. Some xyloses are present in both the mobile and rigid domains of the cell wall, with their chemical shifts partially aligned with the flat-ribbon 2-fold xylan identified in plants. Surprisingly, most other carbohydrates are largely mobile, regardless of their distribution in glycolipids or cell walls. These structural insights correlate with the high digestibility of this cellulose-deficient strain, and the in-cell ssNMR methods will facilitate the investigations of other economically important algae species.
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Affiliation(s)
- Alexandre Poulhazan
- Department
of Chemistry, University of Quebec at Montreal, Montreal H2X 2J6, Canada
| | | | - Artur Muszyński
- Complex
Carbohydrate Research Center, University
of Georgia, Athens, Georgia 30602, United States
| | - Alexandre A. Arnold
- Department
of Chemistry, University of Quebec at Montreal, Montreal H2X 2J6, Canada
| | - Dror E. Warschawski
- Laboratoire
des Biomolécules, LBM, CNRS UMR 7203,
Sorbonne Université, École Normale Supérieure,
PSL University, 75005 Paris, France
| | - Parastoo Azadi
- Complex
Carbohydrate Research Center, University
of Georgia, Athens, Georgia 30602, United States
| | - Isabelle Marcotte
- Department
of Chemistry, University of Quebec at Montreal, Montreal H2X 2J6, Canada
| | - Tuo Wang
- Department
of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
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Cresswell R, Dupree R, Brown SP, Pereira CS, Skaf MS, Sorieul M, Dupree P, Hill S. Importance of Water in Maintaining Softwood Secondary Cell Wall Nanostructure. Biomacromolecules 2021; 22:4669-4680. [PMID: 34669375 PMCID: PMC8579401 DOI: 10.1021/acs.biomac.1c00937] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
![]()
Water is one of the
principal constituents by mass of living plant
cell walls. However, its role and interactions with secondary cell
wall polysaccharides and the impact of dehydration and subsequent
rehydration on the molecular architecture are still to be elucidated.
This work combines multidimensional solid-state 13C magic-angle-spinning
(MAS) nuclear magnetic resonance (NMR) with molecular dynamics modeling
to decipher the role of water in the molecular architecture of softwood
secondary cell walls. The proximities between all main polymers, their
molecular conformations, and interaction energies are compared in
never-dried, oven-dried, and rehydrated states. Water is shown to
play a critical role at the hemicellulose–cellulose interface.
After significant molecular shrinkage caused by dehydration, the original
molecular conformation is not fully recovered after rehydration. The
changes include xylan becoming more closely and irreversibly associated
with cellulose and some mannan becoming more mobile and changing conformation.
These irreversible nanostructural changes provide a basis for explaining
and improving the properties of wood-based materials.
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Affiliation(s)
| | - Ray Dupree
- Physics Department, University of Warwick, Coventry CV4 7AL, U.K
| | - Steven P Brown
- Physics Department, University of Warwick, Coventry CV4 7AL, U.K
| | - Caroline S Pereira
- Institute of Chemistry and Center for Computing in Engineering and Sciences, University of Campinas─UNICAMP, Campinas 13084-862, Sao Paulo, Brazil
| | - Munir S Skaf
- Institute of Chemistry and Center for Computing in Engineering and Sciences, University of Campinas─UNICAMP, Campinas 13084-862, Sao Paulo, Brazil
| | | | - Paul Dupree
- Department of Biochemistry, University of Cambridge, Hopkins Building, Downing Site, Cambridge CB2 1QW, U.K
| | - Stefan Hill
- Scion, 49 Sala Street, Rotorua 3010, New Zealand
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Lassfolk R, Bertuzzi S, Ardá A, Wärnå J, Jiménez‐Barbero J, Leino R. Kinetic Studies of Acetyl Group Migration between the Saccharide Units in an Oligomannoside Trisaccharide Model Compound and a Native Galactoglucomannan Polysaccharide. Chembiochem 2021; 22:2986-2995. [PMID: 34405515 PMCID: PMC8597014 DOI: 10.1002/cbic.202100374] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Indexed: 01/11/2023]
Abstract
Acyl group migration is a fundamental phenomenon in carbohydrate chemistry, recently shown to take place also between two non-adjacent hydroxyl groups, across the glycosidic bond, in a β-(1→4)-linked mannan trisaccharide model compound. With the central mannoside unit containing acetyl groups at the O2 and O3 positions, the O2-acetyl was in the earlier study shown to migrate to O6 of the reducing end. Potential implications of the general acyl migration process on cell signaling events and plant growth in nature are intriguing open questions. In the present work, migration kinetics in this original trisaccharide model system were studied in more detail together with potential interactions of the model compound and the migration products with DC-SIGN lectin. Furthermore, we demonstrate here for the first time that similar migration may also take place in native polysaccharides, here represented by galactoglucomannan from Norway spruce.
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Affiliation(s)
- Robert Lassfolk
- Laboratory of Molecular Science and EngineeringÅbo Akademi University20500TurkuFinland
| | - Sara Bertuzzi
- Chemical Glycobiology LaboratoryCIC bioGUNEBizkaia Technology Park, Building 80048160DerioSpain
| | - Ana Ardá
- Chemical Glycobiology LaboratoryCIC bioGUNEBizkaia Technology Park, Building 80048160DerioSpain
- Ikerbasque, Basque Foundation for SciencePlaza Euskadi 548009BilbaoSpain
| | - Johan Wärnå
- Laboratory of Industrial Chemistry and Reaction EngineeringÅbo Akademi University20500TurkuFinland
| | - Jesús Jiménez‐Barbero
- Chemical Glycobiology LaboratoryCIC bioGUNEBizkaia Technology Park, Building 80048160DerioSpain
- Ikerbasque, Basque Foundation for SciencePlaza Euskadi 548009BilbaoSpain
- Department of Organic & Inorganic ChemistryUniversity of the Basque Country, UPV/EHU48940LeioaBizkaiaSpain
| | - Reko Leino
- Laboratory of Molecular Science and EngineeringÅbo Akademi University20500TurkuFinland
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71
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Zhang C, Chen M, Keten S, Coasne B, Derome D, Carmeliet J. Hygromechanical mechanisms of wood cell wall revealed by molecular modeling and mixture rule analysis. SCIENCE ADVANCES 2021; 7:eabi8919. [PMID: 34516889 PMCID: PMC8442895 DOI: 10.1126/sciadv.abi8919] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Accepted: 07/16/2021] [Indexed: 05/21/2023]
Abstract
Despite the thousands of years of wood utilization, the mechanisms of wood hygromechanics remain barely elucidated, owing to the nanoscopic system size and highly coupled physics. This study uses molecular dynamics simulations to systematically characterize wood polymers, their mixtures, interface, and composites, yielding an unprecedented micromechanical dataset including swelling, mechanical weakening, and hydrogen bonding, over the full hydration range. The rich data reveal the mechanism of wood cell wall hygromechanics: Cellulose fiber dominates the mechanics of cell wall along the longitudinal direction. Hemicellulose glues lignin and cellulose fiber together defining the cell wall mechanics along the transverse direction, and water severely disturbs the hemicellulose-related hydrogen bonds. In contrast, lignin is rather hydration independent and serves mainly as a space filler. The moisture-induced highly anisotropic swelling and weakening of wood cell wall is governed by the interplay of cellulose reinforcement, mechanical degradation of matrix, and fiber-matrix interface.
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Affiliation(s)
- Chi Zhang
- Chair of Building Physics, Department of Mechanical and Process Engineering, ETH Zurich, 8092 Zurich, Switzerland
- Corresponding author.
| | - Mingyang Chen
- Chair of Building Physics, Department of Mechanical and Process Engineering, ETH Zurich, 8092 Zurich, Switzerland
| | - Sinan Keten
- Department of Civil and Environmental Engineering, Northwestern University, Evanston, IL 60208-3109, USA
| | - Benoit Coasne
- Université Grenoble Alpes, CNRS, LIPhy, 38000 Grenoble, France
| | - Dominique Derome
- Department of Civil and Building Engineering, Université de Sherbrooke, Sherbrooke, QC J1K 2R1, Canada
| | - Jan Carmeliet
- Chair of Building Physics, Department of Mechanical and Process Engineering, ETH Zurich, 8092 Zurich, Switzerland
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72
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Lyczakowski JJ, Yu L, Terrett OM, Fleischmann C, Temple H, Thorlby G, Sorieul M, Dupree P. Two conifer GUX clades are responsible for distinct glucuronic acid patterns on xylan. THE NEW PHYTOLOGIST 2021; 231:1720-1733. [PMID: 34086997 DOI: 10.1111/nph.17531] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Accepted: 05/21/2021] [Indexed: 06/12/2023]
Abstract
Wood of coniferous trees (softwood), is a globally significant carbon sink and an important source of biomass. Despite that, little is known about the genetic basis of softwood cell wall biosynthesis. Branching of xylan, one of the main hemicelluloses in softwood secondary cell walls, with glucuronic acid (GlcA) is critical for biomass recalcitrance. Here, we investigate the decoration patterns of xylan by conifer GlucUronic acid substitution of Xylan (GUX) enzymes. Through molecular phylogenetics we identify two distinct conifer GUX clades. Using transcriptional profiling we show that the genes are preferentially expressed in secondary cell wall forming tissues. With in vitro and in planta assays we demonstrate that conifer GUX enzymes from both clades are active glucuronyltransferases. Conifer GUX enzymes from each clade have different specific activities. While members of clade one add evenly spaced GlcA branches, the members of clade two are also capable of glucuronidating two consecutive xyloses. Importantly, these types of xylan patterning are present in softwood. As xylan patterning might modulate xylan-cellulose and xylan-lignin interactions, our results further the understanding of softwood cell wall biosynthesis and provide breeding or genetic engineering targets that can be used to modify softwood properties.
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Affiliation(s)
- Jan J Lyczakowski
- Department of Plant Biotechnology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, Krakow, 30-387, Poland
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QW, UK
| | - Li Yu
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QW, UK
| | - Oliver M Terrett
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QW, UK
| | | | - Henry Temple
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QW, UK
| | | | | | - Paul Dupree
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QW, UK
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NMR spectroscopy probes microstructure, dynamics and doping of metal halide perovskites. Nat Rev Chem 2021; 5:624-645. [PMID: 37118421 DOI: 10.1038/s41570-021-00309-x] [Citation(s) in RCA: 47] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/15/2021] [Indexed: 12/23/2022]
Abstract
Solid-state magic-angle spinning NMR spectroscopy is a powerful technique to probe atomic-level microstructure and structural dynamics in metal halide perovskites. It can be used to measure dopant incorporation, phase segregation, halide mixing, decomposition pathways, passivation mechanisms, short-range and long-range dynamics, and other local properties. This Review describes practical aspects of recording solid-state NMR data on halide perovskites and how these afford unique insights into new compositions, dopants and passivation agents. We discuss the applicability, feasibility and limitations of 1H, 13C, 15N, 14N, 133Cs, 87Rb, 39K, 207Pb, 119Sn, 113Cd, 209Bi, 115In, 19F and 2H NMR in typical experimental scenarios. We highlight the pivotal complementary role of solid-state mechanosynthesis, which enables highly sensitive NMR studies by providing large quantities of high-purity materials of arbitrary complexity and of chemical shifts calculated using density functional theory. We examine the broader impact of solid-state NMR on materials research and how its evolution over seven decades has benefitted structural studies of contemporary materials such as halide perovskites. Finally, we summarize some of the open questions in perovskite optoelectronics that could be addressed using solid-state NMR. We, thereby, hope to stimulate wider use of this technique in materials and optoelectronics research.
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74
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Zhu J, Chen L, Cai C. Acid Hydrotropic Fractionation of Lignocelluloses for Sustainable Biorefinery: Advantages, Opportunities, and Research Needs. CHEMSUSCHEM 2021; 14:3031-3046. [PMID: 34033701 DOI: 10.1002/cssc.202100915] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 05/24/2021] [Indexed: 06/12/2023]
Abstract
This Minireview provides a comprehensive discussion on the potential of using acid hydrotropes for sustainably fractionating lignocelluloses for biorefinery applications. Acid hydrotropes are a class of acids that have hydrotrope properties toward lignin, which helps to solubilize lignin in aqueous systems. With the capability of cleaving ether and ester bonds and even lignin-carbohydrate complex (LCC) linkages, these acid hydrotropes can therefore isolate lignin embedded in the plant biomass cell wall and subsequently solubilize the isolated lignin in aqueous systems. Performances of two acid hydrotropes, that is, an aromatic sulfonic acid [p-toluenesulfonic acid (p-TsOH)] and a dicarboxylic acid [maleic acid (MA)], in terms of delignification and dissolution of hemicelluloses, and reducing lignin condensation, were evaluated and compared. The advantages of lignin esterification by MA for producing cellulosic sugars through enzymatic hydrolysis and lignin-containing cellulose nanofibrils (LCNFs) through mechanical fibrillation from the fractionated water insoluble solids (WIS), and for obtaining less condensed lignin with light color, were demonstrated. The excellent enzymatic digestibility of maleic acid hydrotropic fractionation WISs was also demonstrated by comparing with WISs from other fractionation processes. The recyclability and reusability of acid hydrotropes were also reviewed. Finally, perspectives on future research needs to address key technical issues for commercialization were also provided.
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Affiliation(s)
- Junyong Zhu
- USDA Forest Service, Forest Products Laboratory, Madison, WI, USA
| | - Liheng Chen
- Department of Biomedical Engineering, Jinan University, Guangzhou, P. R. China
| | - Cheng Cai
- Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, P. R. China
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75
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de Vries L, Guevara-Rozo S, Cho M, Liu LY, Renneckar S, Mansfield SD. Tailoring renewable materials via plant biotechnology. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:167. [PMID: 34353358 PMCID: PMC8344217 DOI: 10.1186/s13068-021-02010-z] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Accepted: 07/06/2021] [Indexed: 05/03/2023]
Abstract
Plants inherently display a rich diversity in cell wall chemistry, as they synthesize an array of polysaccharides along with lignin, a polyphenolic that can vary dramatically in subunit composition and interunit linkage complexity. These same cell wall chemical constituents play essential roles in our society, having been isolated by a variety of evolving industrial processes and employed in the production of an array of commodity products to which humans are reliant. However, these polymers are inherently synthesized and intricately packaged into complex structures that facilitate plant survival and adaptation to local biogeoclimatic regions and stresses, not for ease of deconstruction and commercial product development. Herein, we describe evolving techniques and strategies for altering the metabolic pathways related to plant cell wall biosynthesis, and highlight the resulting impact on chemistry, architecture, and polymer interactions. Furthermore, this review illustrates how these unique targeted cell wall modifications could significantly extend the number, diversity, and value of products generated in existing and emerging biorefineries. These modifications can further target the ability for processing of engineered wood into advanced high performance materials. In doing so, we attempt to illuminate the complex connection on how polymer chemistry and structure can be tailored to advance renewable material applications, using all the chemical constituents of plant-derived biopolymers, including pectins, hemicelluloses, cellulose, and lignins.
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Affiliation(s)
- Lisanne de Vries
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, University of Wisconsin - Madison, Madison, WI , 53726, USA
| | - Sydne Guevara-Rozo
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - MiJung Cho
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - Li-Yang Liu
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - Scott Renneckar
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - Shawn D Mansfield
- Department of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada.
- US Department of Energy (DOE) Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, University of Wisconsin - Madison, Madison, WI , 53726, USA.
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Hobbie E, Rinne-Garmston (Rinne) K, Penttilä R, Vadeboncoeur M, Chen J, Mäkipää R. Carbon and nitrogen acquisition strategies by wood decay fungi influence their isotopic signatures in Picea abies forests. FUNGAL ECOL 2021. [DOI: 10.1016/j.funeco.2021.101069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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77
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Vuong TV, Master ER. Enzymatic upgrading of heteroxylans for added-value chemicals and polymers. Curr Opin Biotechnol 2021; 73:51-60. [PMID: 34311175 DOI: 10.1016/j.copbio.2021.07.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Revised: 06/27/2021] [Accepted: 07/02/2021] [Indexed: 02/06/2023]
Abstract
Xylan is one of the most abundant, natural polysaccharides, and much recent interest focuses on upgrading heteroxylan to make use of its unique structures and chemistries. Significant progress has been made in the discovery and application of novel enzymes for debranching and modifying heteroxylans. Debranching enzymes include acetylxylan esterases, α-l-arabinofuranosidases and α-dglucuronidases that release side groups from the xylan backbone to recover both biochemicals and less substituted xylans for polymer applications in food packaging or drug delivery systems. Besides esterases and hydrolases, many oxidoreductases including carbohydrate oxidases, lytic polysaccharide monooxygenases, laccases and peroxidases have been also applied to alter different types of xylans for improved physical and chemical properties. This review will highlight the recent discovery and application of enzymes for upgrading xylans for use as added-value chemicals and in functional polymers.
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Affiliation(s)
- Thu V Vuong
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Canada
| | - Emma R Master
- Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, Canada; Department of Bioproducts and Biosystems, Aalto University, Espoo, Finland.
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78
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Keplinger T, Wittel FK, Rüggeberg M, Burgert I. Wood Derived Cellulose Scaffolds-Processing and Mechanics. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2021; 33:e2001375. [PMID: 32797688 DOI: 10.1002/adma.202001375] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2020] [Revised: 04/19/2020] [Indexed: 05/16/2023]
Abstract
Wood-derived cellulose materials obtained by structure-retaining delignification are attracting increasing attention due to their excellent mechanical properties and great potential to serve as renewable and CO2 storing cellulose scaffolds for advanced hybrid materials with embedded functionality. Various delignification protocols and a multitude of further processing steps including polymer impregnation and densification are applied resulting in a large range of properties. However, treatment optimization requires a more comprehensive characterization of the developed materials in terms of structure, chemical composition, and mechanical properties for faster progress in the field. Herein, the current protocols for structure-retaining delignification are reviewed and the emphasis is placed on the mechanical characterization at different hierarchical levels of the cellulose scaffolds by experiments and modeling to reveal the underlying structure-property relationships.
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Affiliation(s)
- Tobias Keplinger
- ETH Zürich, Institute for Building Materials, Stefano-Franscini-Platz 3, Zurich, 8093, Switzerland
- Empa-Swiss Federal Laboratories for Material Testing and Research, Cellulose & Wood Materials Laboratory, Dübendorf, 8600, Switzerland
| | - Falk K Wittel
- ETH Zürich, Institute for Building Materials, Stefano-Franscini-Platz 3, Zurich, 8093, Switzerland
| | - Markus Rüggeberg
- ETH Zürich, Institute for Building Materials, Stefano-Franscini-Platz 3, Zurich, 8093, Switzerland
- Empa-Swiss Federal Laboratories for Material Testing and Research, Cellulose & Wood Materials Laboratory, Dübendorf, 8600, Switzerland
| | - Ingo Burgert
- ETH Zürich, Institute for Building Materials, Stefano-Franscini-Platz 3, Zurich, 8093, Switzerland
- Empa-Swiss Federal Laboratories for Material Testing and Research, Cellulose & Wood Materials Laboratory, Dübendorf, 8600, Switzerland
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79
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Toumpanaki E, Shah DU, Eichhorn SJ. Beyond What Meets the Eye: Imaging and Imagining Wood Mechanical-Structural Properties. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2021; 33:e2001613. [PMID: 32830395 DOI: 10.1002/adma.202001613] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2020] [Revised: 05/12/2020] [Indexed: 05/20/2023]
Abstract
Wood presents a hierarchical structure, containing features at all length scales: from the tracheids or vessels that make up its cellular structure, through to the microfibrils within the cell walls, down to the molecular architecture of the cellulose, lignin, and hemicelluloses that comprise its chemical makeup. This structure renders it with high mechanical (e.g., modulus and strength) and interesting physical (e.g., optical) properties. A better understanding of this structure, and how it plays a role in governing mechanical and other physical parameters, will help to better exploit this sustainable resource. Here, recent developments on the use of advanced imaging techniques for studying the structural properties of wood in relation to its mechanical properties are explored. The focus is on synchrotron nuclear magnetic resonance spectroscopy, X-ray diffraction, X-ray tomographical imaging, Raman and infrared spectroscopies, confocal microscopy, electron microscopy, and atomic force microscopy. Critical discussion on the role of imaging techniques and how fields are developing rapidly to incorporate both spatial and temporal ranges of analysis is presented.
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Affiliation(s)
- Eleni Toumpanaki
- Bristol Composites Institute, CAME School of Engineering, University of Bristol, University Walk, Bristol, BS8 1TR, UK
| | - Darshil U Shah
- Department of Architecture, Centre for Natural Materials Innovation, University of Cambridge, Cambridge, CB2 1PX, UK
| | - Stephen J Eichhorn
- Bristol Composites Institute, CAME School of Engineering, University of Bristol, University Walk, Bristol, BS8 1TR, UK
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80
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Zhou S, Jin K, Buehler MJ. Understanding Plant Biomass via Computational Modeling. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2021; 33:e2003206. [PMID: 32945027 DOI: 10.1002/adma.202003206] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2020] [Revised: 07/13/2020] [Indexed: 06/11/2023]
Abstract
Plant biomass, especially wood, has been used for structural materials since ancient times. It is also showing great potential for new structural materials and it is the major feedstock for the emerging biorefineries for building a sustainable society. The plant cell wall is a hierarchical matrix of mainly cellulose, hemicellulose, and lignin. Herein, the structure, properties, and reactions of cellulose, lignin, and wood cell walls, studied using density functional theory (DFT) and molecular dynamics (MD), which are the widely used computational modeling approaches, are reviewed. Computational modeling, which has played a crucial role in understanding the structure and properties of plant biomass and its nanomaterials, may serve a leading role on developing new hierarchical materials from biomass in the future.
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Affiliation(s)
- Shengfei Zhou
- Laboratory for Atomistic and Molecular Mechanics, Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, 77 Mass. Ave 1-290, Cambridge, MA, 02139, USA
| | - Kai Jin
- Laboratory for Atomistic and Molecular Mechanics, Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, 77 Mass. Ave 1-290, Cambridge, MA, 02139, USA
| | - Markus J Buehler
- Laboratory for Atomistic and Molecular Mechanics, Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, 77 Mass. Ave 1-290, Cambridge, MA, 02139, USA
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81
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Namyslo JC, Drafz MHH, Kaufmann DE. Durable Modification of Wood by Benzoylation-Proof of Covalent Bonding by Solution State NMR and DOSY NMR Quick-Test. Polymers (Basel) 2021; 13:2164. [PMID: 34208957 PMCID: PMC8271922 DOI: 10.3390/polym13132164] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 06/18/2021] [Accepted: 06/23/2021] [Indexed: 11/17/2022] Open
Abstract
A convenient, broadly applicable and durable wood protection was recently published by Kaufmann and Namyslo. This procedure efficiently allows for esterification of wood hydroxyl groups with (1H-benzotriazolyl)-activated functionalized benzoic acids. The result of such wood-modifying reactions is usually monitored by an increase in mass of the wood material (weight percent gain value, WPG) and by infrared spectroscopy (IR). However, diagnostic IR bands suffer from overlap with naturally occurring ester groups, mainly in the hemicellulose part of unmodified wood. In contrast to known NMR spectroscopy approaches that use the non-commonly available solid state techniques, herein we present solution state NMR proof of the covalent attachment of our organic precursors to wood. The finding is based on a time-efficient, non-uniformly sampled (NUS) solution state 1H,13C-HMBC experiment that only needs a tenth of the regular recording time. The appropriate NMR sample of thoroughly dissolved modified wood was prepared by a mild and non-destructive method. The 2D-HMBC shows a specific cross-signal caused by spin-spin coupling over three bonds from the ester carbonyl carbon atom to the α-protons of the esterified wood hydroxyl groups. This specific coupling pathway requires a covalent bonding as a conditio sine qua non. An even more rapid test to monitor the covalent bonding was achieved with an up-to-date diffusion-ordered spectroscopy sequence (Oneshot-DOSY) based on 1H or 19F as the sensitive nucleus. The control experiment in a series of DOSY spectra gave a by far higher D value of (1.22 ± 0.06)∙10-10 m2∙s-1, which is in accordance with fast diffusion of the "free" and thus rapidly moving small precursor molecule provided as its methyl ester. In the case of a covalent attachment to wood, a significantly smaller D value of (0.12 ± 0.01)∙10-10 m2∙s-1 was obtained.
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Affiliation(s)
| | | | - Dieter E. Kaufmann
- Institute of Organic Chemistry, Clausthal University of Technology, Leibnizstr. 6, 38678 Clausthal-Zellerfeld, Germany; (J.C.N.); (M.H.H.D.)
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82
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Kirui A, Du J, Zhao W, Barnes W, Kang X, Anderson CT, Xiao C, Wang T. A pectin methyltransferase modulates polysaccharide dynamics and interactions in Arabidopsis primary cell walls: Evidence from solid-state NMR. Carbohydr Polym 2021; 270:118370. [PMID: 34364615 DOI: 10.1016/j.carbpol.2021.118370] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 05/21/2021] [Accepted: 06/21/2021] [Indexed: 12/14/2022]
Abstract
Plant cell walls contain cellulose embedded in matrix polysaccharides. Understanding carbohydrate structures and interactions is critical to the production of biofuel and biomaterials using these natural resources. Here we present a solid-state NMR study of cellulose and pectin in 13C-labeled cell walls of Arabidopsis wild-type and mutant plants. Using 1D 13C and 2D 13C-13C correlation experiments, we detected a highly branched arabinan structure in qua2 and tsd2 samples, two allelic mutants for a pectin methyltransferase. Both mutants show close physical association between cellulose and the backbones of pectic homogalacturonan and rhamnogalacturonan-I. Relaxation and dipolar order parameters revealed enhanced microsecond dynamics due to polymer disorder in the mutants, but restricted motional amplitudes due to tighter pectin-cellulose associations. These molecular data shed light on polymer structure and packing in these two pectin mutants, helping to elucidate how pectin could influence cell wall architecture at the nanoscale, cell wall mechanics, and plant growth.
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Affiliation(s)
- Alex Kirui
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803, USA
| | - Juan Du
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610064, PR China
| | - Wancheng Zhao
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803, USA
| | - William Barnes
- Center for Lignocellulose Structure and Formation, The Pennsylvania State University, University Park, PA 16802, USA; Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA
| | - Xue Kang
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803, USA
| | - Charles T Anderson
- Center for Lignocellulose Structure and Formation, The Pennsylvania State University, University Park, PA 16802, USA; Department of Biology, The Pennsylvania State University, University Park, PA 16802, USA
| | - Chaowen Xiao
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610064, PR China.
| | - Tuo Wang
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803, USA.
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83
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Chavan RR, Singh AP, Azizan A, Harris PJ. Heteromannans are the predominant hemicelluloses in the gametophytic stem of the umbrella moss Hypnodendron menziesii and occur in the walls of all cell types. PLANTA 2021; 254:2. [PMID: 34085144 DOI: 10.1007/s00425-021-03650-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2021] [Accepted: 05/24/2021] [Indexed: 06/12/2023]
Abstract
Heteromannans are the predominant hemicelluloses in the gametophytic stem of the moss Hypnodendron menziesii and occur in the walls of all cell types Little is known about the cell-wall polysaccharides of mosses. Monosaccharide analysis of cell walls isolated from the stem of the umbrella moss Hypnodendron menziesii was consistent with heteromannans, probably galactoglucomannans, being the predominant hemicellulosic polysaccharides in the walls. Immunofluorescence and immunogold microscopy with the monoclonal antibody LM21, specific for heteromannans, showed that these polysaccharides were present in the walls of all stem cell types. These cell types, except the hydroids, have secondary walls. Experiments in which sections were pre-treated with 0.1 M sodium carbonate and with the enzyme pectate lyase indicated that the heteromannans have O-acetyl groups that limit LM21 binding and the cell walls contain pectic homogalacturonan that masks detection of heteromannans using LM21. Therefore, to fully detect heteromannans in the cell walls, it was essential to use these pre-treatments to remove the O-acetyl groups from the heteromannans and pectic homogalacturonan from the cell walls. Fluorescence microscopy experiments with a second monoclonal antibody, LM22, also specific for heteromannans, showed similar results, but the binding was considerably weaker than with LM21, possibly as a result of subtle structural differences in the epitopes of the two antibodies. Although heteromannans occur abundantly in the cell walls of many species in basal lineages of tracheophytes, prior to the present study, research on the distribution of these polysaccharides in the walls of different cell types in mosses was confined to the model species Physcomitrium patens.
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Affiliation(s)
- Ramesh R Chavan
- School of Biological Sciences, The University of Auckland, Auckland Mail Centre, Private Bag 92019, Auckland, 1142, New Zealand
| | - Adya P Singh
- School of Biological Sciences, The University of Auckland, Auckland Mail Centre, Private Bag 92019, Auckland, 1142, New Zealand
| | - Awanis Azizan
- School of Biological Sciences, The University of Auckland, Auckland Mail Centre, Private Bag 92019, Auckland, 1142, New Zealand
- Faculty of Health and Environmental Sciences, Institute for Applied Ecology New Zealand, School of Applied Sciences, Auckland University of Technology, Private Bag 92006, Auckland, 1142, New Zealand
| | - Philip J Harris
- School of Biological Sciences, The University of Auckland, Auckland Mail Centre, Private Bag 92019, Auckland, 1142, New Zealand.
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84
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Yuan ECY, Huang SJ, Huang HC, Sinkkonen J, Oss A, Org ML, Samoson A, Tai HC, Chan JCC. Faster magic angle spinning reveals cellulose conformations in woods. Chem Commun (Camb) 2021; 57:4110-4113. [PMID: 33908496 DOI: 10.1039/d1cc01149a] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present a first report on the detection of three different C6 conformers of cellulose in spruce, as revealed by solid-state 1H-13C correlation spectra. The breakthrough in 1H resolution is achieved by magic-angle spinning in the regime of 150 kHz. The suppression of dense dipolar network of 1H provides inverse detected 13C spectra at a good sensitivity even in natural samples. We find that the glycosidic linkages are initially more ordered in spruce than maple, but a thermal treatment of spruce leads to a more heterogeneous packing order of the remaining cellulose fibrils.
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Affiliation(s)
- Eric Chung-Yueh Yuan
- Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan, Republic of China.
| | - Shing-Jong Huang
- Instrumentation Center, National Taiwan University, Taipei 10617, Taiwan, Republic of China
| | - Hung-Chia Huang
- Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan, Republic of China.
| | - Jari Sinkkonen
- Innovation Centre for Biomaterials, Stora Enso AB, Nacka 13154, Sweden
| | - Andres Oss
- Tallinn University of Technology, Estonia.
| | | | | | - Hwan-Ching Tai
- Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan, Republic of China.
| | - Jerry Chun Chung Chan
- Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan, Republic of China.
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85
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Kishani S, Benselfelt T, Wågberg L, Wohlert J. Entropy drives the adsorption of xyloglucan to cellulose surfaces - A molecular dynamics study. J Colloid Interface Sci 2021; 588:485-493. [PMID: 33429345 DOI: 10.1016/j.jcis.2020.12.113] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 12/21/2020] [Accepted: 12/28/2020] [Indexed: 11/27/2022]
Abstract
The adsorption of nonionic polymers to cellulose is of large importance both in the plant cell wall during synthesis and for the development of sustainable materials from wood. Here, the thermodynamics of adsorption of the polysaccharide xyloglucan (XG) to both native and chemically modified cellulose with carboxyl groups was investigated using molecular dynamics simulations. The free energy of adsorption was calculated as the potential of mean force between an XG oligomer and model cellulose surfaces in a range of temperatures from 298 K to 360 K. It was found that the adsorption near room temperature is an endothermic process dominated by the entropy of released interfacial water molecules. This was corroborated by quantitative assessment of the absolute entropy per water molecule both at the interface and in the bulk. In the case of native cellulose, the adsorption became exothermic at higher temperatures, while the relatively strong interactions between water and the charged groups of the oxidized cellulose impede such a transition. The results also indicate that the extraction of strongly associated hemicelluloses would be facilitated by low temperature.
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Affiliation(s)
- Saina Kishani
- Department of Fiber and Polymer Technology, KTH Royal Institute of Technology, SE-10044, Sweden; Wallenberg Wood Science Center, KTH Royal Institute of Technology, SE-10044, Sweden
| | - Tobias Benselfelt
- Department of Fiber and Polymer Technology, KTH Royal Institute of Technology, SE-10044, Sweden; Wallenberg Wood Science Center, KTH Royal Institute of Technology, SE-10044, Sweden
| | - Lars Wågberg
- Department of Fiber and Polymer Technology, KTH Royal Institute of Technology, SE-10044, Sweden; Wallenberg Wood Science Center, KTH Royal Institute of Technology, SE-10044, Sweden
| | - Jakob Wohlert
- Department of Fiber and Polymer Technology, KTH Royal Institute of Technology, SE-10044, Sweden; Wallenberg Wood Science Center, KTH Royal Institute of Technology, SE-10044, Sweden.
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86
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Yao HYY, Wang JQ, Yin JY, Nie SP, Xie MY. A review of NMR analysis in polysaccharide structure and conformation: Progress, challenge and perspective. Food Res Int 2021; 143:110290. [PMID: 33992390 DOI: 10.1016/j.foodres.2021.110290] [Citation(s) in RCA: 146] [Impact Index Per Article: 48.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2020] [Revised: 02/28/2021] [Accepted: 02/28/2021] [Indexed: 12/31/2022]
Abstract
Nuclear magnetic resonance (NMR) has been widely used as an analytical chemistry technique to investigate the molecular structure and conformation of polysaccharides. Combined with 1D spectra, chemical shifts and coupling constants in both homo- and heteronuclear 2D NMR spectra are able to infer the linkage and sequence of sugar residues. Besides, NMR has also been applied in conformation, quantitative analysis, cell wall in situ, degradation, polysaccharide mixture interaction analysis, as well as carbohydrates impurities profiling. This review summarizes the principle and development of NMR in polysaccharides analysis, and provides NMR spectra data collections of some common polysaccharides. It will help to promote the application of NMR in complex polysaccharides of biochemical interest, and provide valuable information on commercial polysaccharide products.
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Affiliation(s)
- Hao-Ying-Ye Yao
- State Key Laboratory of Food Science and Technology, China-Canada Joint Lab of Food Science and Technology (Nanchang), Nanchang University, 235 Nanjing East Road, Nanchang 330047, China.
| | - Jun-Qiao Wang
- State Key Laboratory of Food Science and Technology, China-Canada Joint Lab of Food Science and Technology (Nanchang), Nanchang University, 235 Nanjing East Road, Nanchang 330047, China.
| | - Jun-Yi Yin
- State Key Laboratory of Food Science and Technology, China-Canada Joint Lab of Food Science and Technology (Nanchang), Nanchang University, 235 Nanjing East Road, Nanchang 330047, China.
| | - Shao-Ping Nie
- State Key Laboratory of Food Science and Technology, China-Canada Joint Lab of Food Science and Technology (Nanchang), Nanchang University, 235 Nanjing East Road, Nanchang 330047, China.
| | - Ming-Yong Xie
- State Key Laboratory of Food Science and Technology, China-Canada Joint Lab of Food Science and Technology (Nanchang), Nanchang University, 235 Nanjing East Road, Nanchang 330047, China; National R&D Center for Freshwater Fish Processing, Jiangxi Normal University, Nanchang, Jiangxi 330022, China.
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87
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Cowley JM, Burton RA. The goo-d stuff: Plantago as a myxospermous model with modern utility. THE NEW PHYTOLOGIST 2021; 229:1917-1923. [PMID: 33220085 DOI: 10.1111/nph.17095] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 10/08/2020] [Indexed: 06/11/2023]
Abstract
Mucilage, a gel-like layer formed around wetted seeds in a process called myxospermy, has importance as a proxy for studying cell wall polysaccharide biosynthesis and interactions and as a source of valuable health supplements and hydrocolloids. Arabidopsis thaliana has provided unrivalled insight into mucilage/cell wall synthesis, but its lack of commercial utility presents an opportunity to develop an alternative myxospermous model linking genetics, chemistry and functionality. Here, we discuss recent advances in the understanding of mucilage production, composition and properties of Plantago, a promising candidate as an alternative model with economic relevance. We outline how genomic/transcriptomic and chemical analysis advances could be made to strengthen Plantago's use as a model system, through challenging but achievable approaches.
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Affiliation(s)
- James M Cowley
- School of Agriculture, Food and Wine and ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Urrbrae, SA, 5064, Australia
| | - Rachel A Burton
- School of Agriculture, Food and Wine and ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Urrbrae, SA, 5064, Australia
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88
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Terrazas-Valencia F, Díaz-Ramírez M, Salgado-Cruz MDLP, Méndez-Méndez JV, Toledo-Madrid KI, Calderón-Domínguez G. A water adsorption study on wheat pericarp macrofibrils using atomic force microscopy. Micron 2021; 143:103010. [PMID: 33485096 DOI: 10.1016/j.micron.2021.103010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 10/27/2020] [Accepted: 12/30/2020] [Indexed: 10/22/2022]
Abstract
Wheat pericarp, which is the most external layer of the wheat kernel, is composed of a polysaccharide matrix, where cellulose macrofibrils, hemicellulose, and lignin are their main components. These polysaccharides modified their structure due to the hydric condition to which they are subjected. This effect is considered as an advantage in the wheat milling process. However, no information about micro and nanostructural changes on wheat pericarp macrofibrils due to their hydric condition, studied by the AFM technique and image analysis, has been reported. On the other hand, cellulose macrofibrils have been extensively studied by AFM but performing the study at constant relative humidity (RH) level. Hence, this study aimed to investigate the water adsorption process on wheat pericarp macrofibrils using AFM and control the RH to which samples were subjected during examinations with a lab equipment specially developed for the AFM experiment. The RH was modified from 10 to 90 %, and peak force error images were acquired, from which macrofibrils' diameter, swelling behavior, and water adsorption isotherms were calculated, using image analysis tools. Also, as an application from the water adsorption isotherms, the specific surface area and the hygroscopic swelling coefficients were determined. Results showed that wheat pericarp macrofibrils presented an unusual swelling behavior, with the most notorious changes after reaching a moisture content in equilibrium to 40 % of RH. The average diameter of the macro-fibrils varied from 45 to 48 nm. The water vapor adsorption isotherm obtained from AFM micrographs image analysis did not resemble the sigmoidal IUPAC Type II, generally obtained by applying gravimetric methods. Results suggest that the macrofibrils swelling controls water accessibility to the internal macrofibrils structures. It was proved with this study the feasibility of using AFM and image analysis to build water vapor isotherms and other mass transport parameters based on the macrofibrils swelling.
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Affiliation(s)
- Francisco Terrazas-Valencia
- Departamento de Ingeniería Bioquímica, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Unidad Profesional Adolfo López Mateos, Zacatenco, Av. Wilfrido Massieu 399, Col. Nueva Industrial Vallejo, Alcaldía, Gustavo A. Madero C.P. 07738, Ciudad de México, Mexico.
| | - Mayra Díaz-Ramírez
- Departamento de Ciencias de la Alimentación, Universidad Autónoma Metropolitana - Unidad Lerma, Av. de las Garzas No. 10, Col. El Panteón Lerma de Villada, Municipio de Lerma C.P. 52005, Estado de México, Mexico
| | - Ma de la Paz Salgado-Cruz
- Departamento de Ingeniería Bioquímica, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Unidad Profesional Adolfo López Mateos, Zacatenco, Av. Wilfrido Massieu 399, Col. Nueva Industrial Vallejo, Alcaldía, Gustavo A. Madero C.P. 07738, Ciudad de México, Mexico; Consejo Nacional de Ciencia y Tecnología (CONACYT), Av. Insurgentes Sur 1582, Col. Crédito Constructor, Alcaldía Benito Juárez C.P. 03940, Ciudad de México, Mexico
| | - Juan Vicente Méndez-Méndez
- Centro de Nanociencias y Micro y Nanotecnologías, Instituto Politécnico Nacional, Av. Luis Enrique Erro s/n, Col. Nueva Industrial Vallejo, Alcaldía Gustavo A. Madero C.P. 07738, Ciudad de México, Mexico
| | - Keren Ileana Toledo-Madrid
- Departamento de Ingeniería Bioquímica, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Unidad Profesional Adolfo López Mateos, Zacatenco, Av. Wilfrido Massieu 399, Col. Nueva Industrial Vallejo, Alcaldía, Gustavo A. Madero C.P. 07738, Ciudad de México, Mexico
| | - Georgina Calderón-Domínguez
- Departamento de Ingeniería Bioquímica, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Unidad Profesional Adolfo López Mateos, Zacatenco, Av. Wilfrido Massieu 399, Col. Nueva Industrial Vallejo, Alcaldía, Gustavo A. Madero C.P. 07738, Ciudad de México, Mexico.
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89
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Thomas LH, Altaner CM, Forsyth VT, Mossou E, Kennedy CJ, Martel A, Jarvis MC. Nanostructural deformation of high-stiffness spruce wood under tension. Sci Rep 2021; 11:453. [PMID: 33432070 PMCID: PMC7801420 DOI: 10.1038/s41598-020-79676-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 12/08/2020] [Indexed: 12/17/2022] Open
Abstract
Conifer wood is an exceptionally stiff and strong material when its cellulose microfibrils are well aligned. However, it is not well understood how the polymer components cellulose, hemicelluloses and lignin co-operate to resist tensile stress in wood. From X-ray scattering, neutron scattering and spectroscopic data, collected under tension and processed by novel methods, the ordered, disordered and hemicellulose-coated cellulose components comprising each microfibril were shown to stretch together and demonstrated concerted, viscous stress relaxation facilitated by water. Different cellulose microfibrils did not all stretch to the same degree. Attempts were made to distinguish between microfibrils showing large and small elongation but these domains were shown to be similar with respect to orientation, crystalline disorder, hydration and the presence of bound xylan. These observations are consistent with a major stress transfer process between microfibrils being shear at interfaces in direct, hydrogen-bonded contact, as demonstrated by small-angle neutron scattering. If stress were transmitted between microfibrils by bridging hemicelluloses these might have been expected to show divergent stretching and relaxation behaviour, which was not observed. However lignin and hemicellulosic glucomannans may contribute to stress transfer on a larger length scale between microfibril bundles (macrofibrils).
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Affiliation(s)
- Lynne H Thomas
- Department of Chemistry, University of Bath, Claverton Down, Bath, BA2 7AY, UK
| | - Clemens M Altaner
- New Zealand School of Forestry, University of Canterbury, Private Bag 4800, Christchurch, New Zealand
| | - V Trevor Forsyth
- Institut Laue-Langevin, 38042, Grenoble Cedex 9, France.,Partnership for Structural Biology (PSB), 38042, Grenoble Cedex 9, France.,Faculty of Natural Sciences, Keele University, Staffordshire, ST5 5BG, UK
| | - Estelle Mossou
- Institut Laue-Langevin, 38042, Grenoble Cedex 9, France.,Partnership for Structural Biology (PSB), 38042, Grenoble Cedex 9, France.,Faculty of Natural Sciences, Keele University, Staffordshire, ST5 5BG, UK
| | - Craig J Kennedy
- School of Energy, Geoscience, Infrastructure and Society, Heriot Watt University, Edinburgh, EH14 4AS, Scotland, UK
| | - Anne Martel
- Institut Laue-Langevin, 38042, Grenoble Cedex 9, France
| | - Michael C Jarvis
- School of Chemistry, Glasgow University, Glasgow, G12 8QQ, Scotland, UK.
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90
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Raji O, Arnling Bååth J, Vuong TV, Larsbrink J, Olsson L, Master ER. The coordinated action of glucuronoyl esterase and α-glucuronidase promotes the disassembly of lignin-carbohydrate complexes. FEBS Lett 2021; 595:351-359. [PMID: 33277689 PMCID: PMC8044923 DOI: 10.1002/1873-3468.14019] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Revised: 11/24/2020] [Accepted: 11/25/2020] [Indexed: 12/19/2022]
Abstract
Glucuronoxylans represent a significant fraction of woody biomass, and its decomposition is complicated by the presence of lignin–carbohydrate complexes (LCCs). Herein, LCCs from birchwood were used to investigate the potential coordinated action of a glucuronoyl esterase (TtCE15A) and two α‐glucuronidases (SdeAgu115A and AxyAgu115A). When supplementing α‐glucuronidase with equimolar quantities of TtCE15A, total MeGlcpA released after 72 h by SdeAgu115A and AxyAgu115A increased from 52% to 67%, and 61% to 95%, respectively. Based on the combined TtCE15A and AxyAgu115A activities, ~ 34% of MeGlcpA in the extracted birchwood glucuronoxylan was occupied as LCCs. Notably, insoluble LCC fractions reduced soluble α‐glucuronidase concentrations by up to 70%, whereas reduction in soluble TtCE15A was less than 30%, indicating different tendencies to adsorb onto the LCC substrate.
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Affiliation(s)
- Olanrewaju Raji
- Department of Chemical Engineering and Applied Science, University of Toronto, ON, Canada
| | - Jenny Arnling Bååth
- Department of Biology and Biological Engineering, Wallenberg Wood Science Center, Chalmers University of Technology, Gothenburg, Sweden
| | - Thu V Vuong
- Department of Chemical Engineering and Applied Science, University of Toronto, ON, Canada
| | - Johan Larsbrink
- Department of Biology and Biological Engineering, Wallenberg Wood Science Center, Chalmers University of Technology, Gothenburg, Sweden
| | - Lisbeth Olsson
- Department of Biology and Biological Engineering, Wallenberg Wood Science Center, Chalmers University of Technology, Gothenburg, Sweden
| | - Emma R Master
- Department of Chemical Engineering and Applied Science, University of Toronto, ON, Canada.,Department of Bioproducts and Biosystems, Aalto University, Espoo, Finland
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91
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Zhao W, Kirui A, Deligey F, Mentink-Vigier F, Zhou Y, Zhang B, Wang T. Solid-state NMR of unlabeled plant cell walls: high-resolution structural analysis without isotopic enrichment. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:14. [PMID: 33413580 PMCID: PMC7792314 DOI: 10.1186/s13068-020-01858-x] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Accepted: 12/11/2020] [Indexed: 05/05/2023]
Abstract
BACKGROUND Multidimensional solid-state nuclear magnetic resonance (ssNMR) spectroscopy has emerged as an indispensable technique for resolving polymer structure and intermolecular packing in primary and secondary plant cell walls. Isotope (13C) enrichment provides feasible sensitivity for measuring 2D/3D correlation spectra, but this time-consuming procedure and its associated expenses have restricted the application of ssNMR in lignocellulose analysis. RESULTS Here, we present a method that relies on the sensitivity-enhancing technique Dynamic Nuclear Polarization (DNP) to eliminate the need for 13C-labeling. With a 26-fold sensitivity enhancement, a series of 2D 13C-13C correlation spectra were successfully collected using the unlabeled stems of wild-type Oryza sativa (rice). The atomic resolution allows us to observe a large number of intramolecular cross peaks for fully revealing the polymorphic structure of cellulose and xylan. NMR relaxation and dipolar order parameters further suggest a sophisticated change of molecular motions in a ctl1 ctl2 double mutant: both cellulose and xylan have become more dynamic on the nanosecond and microsecond timescale, but the motional amplitudes are uniformly small for both polysaccharides. CONCLUSIONS By skipping isotopic labeling, the DNP strategy demonstrated here is universally extendable to all lignocellulose materials. This time-efficient method has landed the technical foundation for understanding polysaccharide structure and cell wall assembly in a large variety of plant tissues and species.
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Affiliation(s)
- Wancheng Zhao
- Department of Chemistry, Louisiana State University, Baton Rouge, LA, 70803, USA
| | - Alex Kirui
- Department of Chemistry, Louisiana State University, Baton Rouge, LA, 70803, USA
| | - Fabien Deligey
- Department of Chemistry, Louisiana State University, Baton Rouge, LA, 70803, USA
| | | | - Yihua Zhou
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Baocai Zhang
- State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Tuo Wang
- Department of Chemistry, Louisiana State University, Baton Rouge, LA, 70803, USA.
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92
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Heise K, Kontturi E, Allahverdiyeva Y, Tammelin T, Linder MB, Nonappa, Ikkala O. Nanocellulose: Recent Fundamental Advances and Emerging Biological and Biomimicking Applications. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2021; 33:e2004349. [PMID: 33289188 DOI: 10.1002/adma.202004349] [Citation(s) in RCA: 134] [Impact Index Per Article: 44.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 08/01/2020] [Indexed: 06/12/2023]
Abstract
In the effort toward sustainable advanced functional materials, nanocelluloses have attracted extensive recent attention. Nanocelluloses range from rod-like highly crystalline cellulose nanocrystals to longer and more entangled cellulose nanofibers, earlier denoted also as microfibrillated celluloses and bacterial cellulose. In recent years, they have spurred research toward a wide range of applications, ranging from nanocomposites, viscosity modifiers, films, barrier layers, fibers, structural color, gels, aerogels and foams, and energy applications, until filtering membranes, to name a few. Still, nanocelluloses continue to show surprisingly high challenges to master their interactions and tailorability to allow well-controlled assemblies for functional materials. Rather than trying to review the already extensive nanocellulose literature at large, here selected aspects of the recent progress are the focus. Water interactions, which are central for processing for the functional properties, are discussed first. Then advanced hybrid gels toward (multi)stimuli responses, shape-memory materials, self-healing, adhesion and gluing, biological scaffolding, and forensic applications are discussed. Finally, composite fibers are discussed, as well as nanocellulose as a strategy for improvement of photosynthesis-based chemicals production. In summary, selected perspectives toward new directions for sustainable high-tech functional materials science based on nanocelluloses are described.
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Affiliation(s)
- Katja Heise
- Department of Bioproducts and Biosystems, Aalto University, Espoo, FI-00076, Finland
- Center of Excellence in Molecular Engineering of Biosynthetic Hybrid Materials Research, Aalto University, FI-00076, Finland
| | - Eero Kontturi
- Department of Bioproducts and Biosystems, Aalto University, Espoo, FI-00076, Finland
| | - Yagut Allahverdiyeva
- Molecular Plant Biology, Department of Biochemistry, University of Turku, Turku, FI-20014, Finland
| | - Tekla Tammelin
- VTT Technical Research Centre of Finland Ltd, VTT, PO Box 1000, FIN-02044, Espoo, Finland
| | - Markus B Linder
- Department of Bioproducts and Biosystems, Aalto University, Espoo, FI-00076, Finland
- Center of Excellence in Molecular Engineering of Biosynthetic Hybrid Materials Research, Aalto University, FI-00076, Finland
| | - Nonappa
- Department of Bioproducts and Biosystems, Aalto University, Espoo, FI-00076, Finland
- Center of Excellence in Molecular Engineering of Biosynthetic Hybrid Materials Research, Aalto University, FI-00076, Finland
- Department of Applied Physics, Aalto University, Espoo, FI-00076, Finland
- Faculty of Engineering and Natural Sciences, Tampere University, P.O. Box 541, Tampere, FI-33101, Finland
| | - Olli Ikkala
- Department of Bioproducts and Biosystems, Aalto University, Espoo, FI-00076, Finland
- Center of Excellence in Molecular Engineering of Biosynthetic Hybrid Materials Research, Aalto University, FI-00076, Finland
- Department of Applied Physics, Aalto University, Espoo, FI-00076, Finland
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93
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Penttilä PA, Altgen M, Awais M, Österberg M, Rautkari L, Schweins R. Bundling of cellulose microfibrils in native and polyethylene glycol-containing wood cell walls revealed by small-angle neutron scattering. Sci Rep 2020; 10:20844. [PMID: 33257738 PMCID: PMC7705696 DOI: 10.1038/s41598-020-77755-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Accepted: 11/17/2020] [Indexed: 12/02/2022] Open
Abstract
Wood and other plant-based resources provide abundant, renewable raw materials for a variety of applications. Nevertheless, their utilization would greatly benefit from more efficient and accurate methods to characterize the detailed nanoscale architecture of plant cell walls. Non-invasive techniques such as neutron and X-ray scattering hold a promise for elucidating the hierarchical cell wall structure and any changes in its morphology, but their use is hindered by challenges in interpreting the experimental data. We used small-angle neutron scattering in combination with contrast variation by poly(ethylene glycol) (PEG) to identify the scattering contribution from cellulose microfibril bundles in native wood cell walls. Using this method, mean diameters for the microfibril bundles from 12 to 19 nm were determined, without the necessity of cutting, drying or freezing the cell wall. The packing distance of the individual microfibrils inside the bundles can be obtained from the same data. This finding opens up possibilities for further utilization of small-angle scattering in characterizing the plant cell wall nanostructure and its response to chemical, physical and biological modifications or even in situ treatments. Moreover, our results give new insights into the interaction between PEG and the wood nanostructure, which may be helpful for preservation of archaeological woods.
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Affiliation(s)
- Paavo A Penttilä
- Department of Bioproducts and Biosystems, Aalto University, P.O. Box 16300, 00076, Aalto, Finland.
- Large-Scale Structures Group, Institut Laue-Langevin (ILL), 71 Avenue des Martyrs, 38042, Grenoble, France.
| | - Michael Altgen
- Department of Bioproducts and Biosystems, Aalto University, P.O. Box 16300, 00076, Aalto, Finland
| | - Muhammad Awais
- Department of Bioproducts and Biosystems, Aalto University, P.O. Box 16300, 00076, Aalto, Finland
| | - Monika Österberg
- Department of Bioproducts and Biosystems, Aalto University, P.O. Box 16300, 00076, Aalto, Finland
| | - Lauri Rautkari
- Department of Bioproducts and Biosystems, Aalto University, P.O. Box 16300, 00076, Aalto, Finland
| | - Ralf Schweins
- Large-Scale Structures Group, Institut Laue-Langevin (ILL), 71 Avenue des Martyrs, 38042, Grenoble, France
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94
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A grass-specific cellulose-xylan interaction dominates in sorghum secondary cell walls. Nat Commun 2020; 11:6081. [PMID: 33247125 PMCID: PMC7695714 DOI: 10.1038/s41467-020-19837-z] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Accepted: 10/27/2020] [Indexed: 01/02/2023] Open
Abstract
Sorghum (Sorghum bicolor L. Moench) is a promising source of lignocellulosic biomass for the production of renewable fuels and chemicals, as well as for forage. Understanding secondary cell wall architecture is key to understanding recalcitrance i.e. identifying features which prevent the efficient conversion of complex biomass to simple carbon units. Here, we use multi-dimensional magic angle spinning solid-state NMR to characterize the sorghum secondary cell wall. We show that xylan is mainly in a three-fold screw conformation due to dense arabinosyl substitutions, with close proximity to cellulose. We also show that sorghum secondary cell walls present a high ratio of amorphous to crystalline cellulose as compared to dicots. We propose a model of sorghum cell wall architecture which is dominated by interactions between three-fold screw xylan and amorphous cellulose. This work will aid the design of low-recalcitrance biomass crops, a requirement for a sustainable bioeconomy. Sorghum is a source of lignocellulosic biomass for the production of renewable fuels. Here the authors characterise the sorghum secondary cell wall using multi-dimensional magic angle spinning solid-state NMR and present a model dominated by interactions between three-fold screw xylan and amorphous cellulose.
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95
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Addison B, Stengel D, Bharadwaj VS, Happs RM, Doeppke C, Wang T, Bomble YJ, Holland GP, Harman-Ware AE. Selective One-Dimensional 13C- 13C Spin-Diffusion Solid-State Nuclear Magnetic Resonance Methods to Probe Spatial Arrangements in Biopolymers Including Plant Cell Walls, Peptides, and Spider Silk. J Phys Chem B 2020; 124:9870-9883. [PMID: 33091304 DOI: 10.1021/acs.jpcb.0c07759] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
Two-dimensional (2D) and 3D through-space 13C-13C homonuclear spin-diffusion techniques are powerful solid-state nuclear magnetic resonance (NMR) tools for extracting structural information from 13C-enriched biomolecules, but necessarily long acquisition times restrict their applications. In this work, we explore the broad utility and underutilized power of a chemical shift-selective one-dimensional (1D) version of a 2D 13C-13C spin-diffusion solid-state NMR technique. The method, which is called 1D dipolar-assisted rotational resonance (DARR) difference, is applied to a variety of biomaterials including lignocellulosic plant cell walls, microcrystalline peptide fMLF, and black widow dragline spider silk. 1D 13C-13C spin-diffusion methods described here apply in select cases in which the 1D 13C solid-state NMR spectrum displays chemical shift-resolved moieties. This is analogous to the selective 1D nuclear Overhauser effect spectroscopy (NOESY) experiment utilized in liquid-state NMR as a faster (1D instead of 2D) and often less ambiguous (direct sampling of the time domain data, coupled with increased signal averaging) alternative to 2D NOESY. Selective 1D 13C-13C spin-diffusion methods are more time-efficient than their 2D counterparts such as proton-driven spin diffusion (PDSD) and dipolar-assisted rotational resonance. The additional time gained enables measurements of 13C-13C spin-diffusion buildup curves and extraction of spin-diffusion time constants TSD, yielding detailed structural information. Specifically, selective 1D DARR difference buildup curves applied to 13C-enriched hybrid poplar woody stems confirm strong spatial interaction between lignin and acetylated xylan polymers within poplar plant secondary cell walls, and an interpolymer distance of ∼0.45-0.5 nm was estimated. Additionally, Tyr/Gly long-range correlations were observed on isotopically enriched black widow spider dragline silks.
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Affiliation(s)
- Bennett Addison
- Renewable Resources and Enabling Sciences Center, 15013 Denver West Parkway, Golden, Colorado 80401, United States
| | - Dillan Stengel
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, California 92182-1030, United States
| | - Vivek S Bharadwaj
- Renewable Resources and Enabling Sciences Center, 15013 Denver West Parkway, Golden, Colorado 80401, United States
| | - Renee M Happs
- Renewable Resources and Enabling Sciences Center, 15013 Denver West Parkway, Golden, Colorado 80401, United States
| | - Crissa Doeppke
- Renewable Resources and Enabling Sciences Center, 15013 Denver West Parkway, Golden, Colorado 80401, United States
| | - Tuo Wang
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - Yannick J Bomble
- Biosciences Center, 15013 Denver West Parkway, Golden, Colorado 80401, United States
| | - Gregory P Holland
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, California 92182-1030, United States
| | - Anne E Harman-Ware
- Renewable Resources and Enabling Sciences Center, 15013 Denver West Parkway, Golden, Colorado 80401, United States
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96
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Wood hemicelluloses exert distinct biomechanical contributions to cellulose fibrillar networks. Nat Commun 2020; 11:4692. [PMID: 32943624 PMCID: PMC7499266 DOI: 10.1038/s41467-020-18390-z] [Citation(s) in RCA: 67] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2020] [Accepted: 08/20/2020] [Indexed: 12/03/2022] Open
Abstract
Hemicelluloses, a family of heterogeneous polysaccharides with complex molecular structures, constitute a fundamental component of lignocellulosic biomass. However, the contribution of each hemicellulose type to the mechanical properties of secondary plant cell walls remains elusive. Here we homogeneously incorporate different combinations of extracted and purified hemicelluloses (xylans and glucomannans) from softwood and hardwood species into self-assembled networks during cellulose biosynthesis in a bacterial model, without altering the morphology and the crystallinity of the cellulose bundles. These composite hydrogels can be therefore envisioned as models of secondary plant cell walls prior to lignification. The incorporated hemicelluloses exhibit both a rigid phase having close interactions with cellulose, together with a flexible phase contributing to the multiscale architecture of the bacterial cellulose hydrogels. The wood hemicelluloses exhibit distinct biomechanical contributions, with glucomannans increasing the elastic modulus in compression, and xylans contributing to a dramatic increase of the elongation at break under tension. These diverging effects cannot be explained solely from the nature of their direct interactions with cellulose, but can be related to the distinct molecular structure of wood xylans and mannans, the multiphase architecture of the hydrogels and the aggregative effects amongst hemicellulose-coated fibrils. Our study contributes to understanding the specific roles of wood xylans and glucomannans in the biomechanical integrity of secondary cell walls in tension and compression and has significance for the development of lignocellulosic materials with controlled assembly and tailored mechanical properties. Hemicelluloses are an essential constituent of plant cell walls, but the individual biomechanical roles remain elusive. Here the authors report on the interaction of wood hemicellulose with bacterial cellulose during deposition and explore the resultant fibrillar architecture and mechanical properties.
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97
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Kang H, Guan L, An K, Tian D. Preparation and physicochemical properties of konjac glucomannan ibuprofen ester as a polysaccharide-drug conjugate. JOURNAL OF MACROMOLECULAR SCIENCE PART A-PURE AND APPLIED CHEMISTRY 2020. [DOI: 10.1080/10601325.2020.1821709] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Huiting Kang
- School of Chemical and Environmental Engineering, Hubei Minzu University, Enshi, People’s Republic of China
| | - Lianxiong Guan
- School of Chemical and Environmental Engineering, Hubei Minzu University, Enshi, People’s Republic of China
| | - Kai An
- School of Chemical and Environmental Engineering, Hubei Minzu University, Enshi, People’s Republic of China
| | - Dating Tian
- School of Chemical and Environmental Engineering, Hubei Minzu University, Enshi, People’s Republic of China
- Key Laboratory of Biologic Resources Protection and Utilization of Hubei Province, Hubei Minzu University, Enshi, People’s Republic of China
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98
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Penttilä PA, Paajanen A, Ketoja JA. Combining scattering analysis and atomistic simulation of wood-water interactions. Carbohydr Polym 2020; 251:117064. [PMID: 33142616 DOI: 10.1016/j.carbpol.2020.117064] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Revised: 09/03/2020] [Accepted: 09/03/2020] [Indexed: 01/11/2023]
Abstract
Molecular-scale interactions between water and cellulose microfibril bundles in plant cell walls are not fully understood, despite their crucial role for many applications of plant biomass. Recent advances in X-ray and neutron scattering analysis allow more accurate interpretation of experimental data from wood cell walls. At the same time, microfibril bundles including hemicelluloses and water can be modelled at atomistic resolution. Computing scattering patterns from atomistic models enables a new, complementary approach to decipher some of the most fundamental questions at this level of the hierarchical cell wall structure. This article introduces studies related to moisture behavior of wood with small/wide-angle X-ray/neutron scattering and atomistic simulations, recent attempts to combine these two approaches, and perspectives and open questions for future research using this powerful combination. Finally, we discuss the opportunities of the combined method in relation to applications of lignocellulosic materials.
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Affiliation(s)
- Paavo A Penttilä
- Department of Bioproducts and Biosystems, Aalto University, P.O. Box 16300, FI-00076 Aalto, Finland.
| | - Antti Paajanen
- VTT Technical Research Centre of Finland Ltd, P.O. Box 1000, FI-02044 VTT, Finland
| | - Jukka A Ketoja
- VTT Technical Research Centre of Finland Ltd, P.O. Box 1000, FI-02044 VTT, Finland
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99
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Makarem M, Nishiyama Y, Xin X, Durachko DM, Gu Y, Cosgrove DJ, Kim SH. Distinguishing Mesoscale Polar Order (Unidirectional vs Bidirectional) of Cellulose Microfibrils in Plant Cell Walls Using Sum Frequency Generation Spectroscopy. J Phys Chem B 2020; 124:8071-8081. [DOI: 10.1021/acs.jpcb.0c07076] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Mohamadamin Makarem
- Department of Chemical Engineering, Materials Research Institute, Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | | | - Xiaoran Xin
- Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Daniel M. Durachko
- Department of Biology, Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Ying Gu
- Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Daniel J. Cosgrove
- Department of Biology, Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Seong H. Kim
- Department of Chemical Engineering, Materials Research Institute, Pennsylvania State University, University Park, Pennsylvania 16802, United States
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100
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Chakraborty A, Deligey F, Quach J, Mentink-Vigier F, Wang P, Wang T. Biomolecular complex viewed by dynamic nuclear polarization solid-state NMR spectroscopy. Biochem Soc Trans 2020; 48:1089-1099. [PMID: 32379300 PMCID: PMC7565284 DOI: 10.1042/bst20191084] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2020] [Revised: 04/17/2020] [Accepted: 04/20/2020] [Indexed: 01/07/2023]
Abstract
Solid-state nuclear magnetic resonance (ssNMR) is an indispensable tool for elucidating the structure and dynamics of insoluble and non-crystalline biomolecules. The recent advances in the sensitivity-enhancing technique magic-angle spinning dynamic nuclear polarization (MAS-DNP) have substantially expanded the territory of ssNMR investigations and enabled the detection of polymer interfaces in a cellular environment. This article highlights the emerging MAS-DNP approaches and their applications to the analysis of biomolecular composites and intact cells to determine the folding pathway and ligand binding of proteins, the structural polymorphism of low-populated biopolymers, as well as the physical interactions between carbohydrates, proteins, and lignin. These structural features provide an atomic-level understanding of many cellular processes, promoting the development of better biomaterials and inhibitors. It is anticipated that the capabilities of MAS-DNP in biomolecular and biomaterial research will be further enlarged by the rapid development of instrumentation and methodology.
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Affiliation(s)
- Arnab Chakraborty
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803, USA
| | - Fabien Deligey
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803, USA
| | - Jenny Quach
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803, USA
| | | | - Ping Wang
- Department of Microbiology, Immunology, and Parasitology, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA
| | - Tuo Wang
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803, USA
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