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Yang S, Allen JA, Hong C, Arnold KP, Weiss SM, Ndukaife JC. Multiplexed Long-Range Electrohydrodynamic Transport and Nano-Optical Trapping with Cascaded Bowtie Photonic Crystal Nanobeams. PHYSICAL REVIEW LETTERS 2023; 130:083802. [PMID: 36898095 DOI: 10.1103/physrevlett.130.083802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Accepted: 01/19/2023] [Indexed: 06/18/2023]
Abstract
Photonic crystal cavities with bowtie defects that combine ultrahigh Q and ultralow mode volume are theoretically studied for low-power nanoscale optical trapping. By harnessing the localized heating of the water layer near the bowtie region, combined with an applied alternating current electric field, this system provides long-range electrohydrodynamic transport of particles with average radial velocities of 30 μm/s towards the bowtie region on demand by switching the input wavelength. Once transported to a given bowtie region, synergistic interaction of optical gradient and attractive negative thermophoretic forces stably trap a 10 nm quantum dot in a potential well with a depth of 10 k_{B}T using a mW input power.
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Affiliation(s)
- Sen Yang
- Interdisciplinary Materials Science, Vanderbilt University, Nashville, Tennessee 37235, USA
- Vanderbilt Institute of Nanoscale Science and Engineering, Vanderbilt University, Nashville, Tennessee 37235, USA
| | - Joshua A Allen
- Interdisciplinary Materials Science, Vanderbilt University, Nashville, Tennessee 37235, USA
- Vanderbilt Institute of Nanoscale Science and Engineering, Vanderbilt University, Nashville, Tennessee 37235, USA
| | - Chuchuan Hong
- Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, Tennessee 37235, USA
- Vanderbilt Institute of Nanoscale Science and Engineering, Vanderbilt University, Nashville, Tennessee 37235, USA
| | - Kellen P Arnold
- Interdisciplinary Materials Science, Vanderbilt University, Nashville, Tennessee 37235, USA
- Vanderbilt Institute of Nanoscale Science and Engineering, Vanderbilt University, Nashville, Tennessee 37235, USA
| | - Sharon M Weiss
- Interdisciplinary Materials Science, Vanderbilt University, Nashville, Tennessee 37235, USA
- Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, Tennessee 37235, USA
- Vanderbilt Institute of Nanoscale Science and Engineering, Vanderbilt University, Nashville, Tennessee 37235, USA
| | - Justus C Ndukaife
- Interdisciplinary Materials Science, Vanderbilt University, Nashville, Tennessee 37235, USA
- Department of Electrical and Computer Engineering, Vanderbilt University, Nashville, Tennessee 37235, USA
- Vanderbilt Institute of Nanoscale Science and Engineering, Vanderbilt University, Nashville, Tennessee 37235, USA
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52
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Riccardi M, Martin OJF. Electromagnetic Forces and Torques: From Dielectrophoresis to Optical Tweezers. Chem Rev 2023; 123:1680-1711. [PMID: 36719985 PMCID: PMC9951227 DOI: 10.1021/acs.chemrev.2c00576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Indexed: 02/02/2023]
Abstract
Electromagnetic forces and torques enable many key technologies, including optical tweezers or dielectrophoresis. Interestingly, both techniques rely on the same physical process: the interaction of an oscillating electric field with a particle of matter. This work provides a unified framework to understand this interaction both when considering fields oscillating at low frequencies─dielectrophoresis─and high frequencies─optical tweezers. We draw useful parallels between these two techniques, discuss the different and often unstated assumptions they are based upon, and illustrate key applications in the fields of physical and analytical chemistry, biosensing, and colloidal science.
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Affiliation(s)
- Marco Riccardi
- Nanophotonics and Metrology Laboratory, Swiss Federal Institute of Technology Lausanne (EPFL), EPFL-STI-NAM, Station 11, CH-1015Lausanne, Switzerland
| | - Olivier J. F. Martin
- Nanophotonics and Metrology Laboratory, Swiss Federal Institute of Technology Lausanne (EPFL), EPFL-STI-NAM, Station 11, CH-1015Lausanne, Switzerland
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53
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Scott S, Weiss M, Selhuber-Unkel C, Barooji YF, Sabri A, Erler JT, Metzler R, Oddershede LB. Extracting, quantifying, and comparing dynamical and biomechanical properties of living matter through single particle tracking. Phys Chem Chem Phys 2023; 25:1513-1537. [PMID: 36546878 DOI: 10.1039/d2cp01384c] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A panoply of new tools for tracking single particles and molecules has led to an explosion of experimental data, leading to novel insights into physical properties of living matter governing cellular development and function, health and disease. In this Perspective, we present tools to investigate the dynamics and mechanics of living systems from the molecular to cellular scale via single-particle techniques. In particular, we focus on methods to measure, interpret, and analyse complex data sets that are associated with forces, materials properties, transport, and emergent organisation phenomena within biological and soft-matter systems. Current approaches, challenges, and existing solutions in the associated fields are outlined in order to support the growing community of researchers at the interface of physics and the life sciences. Each section focuses not only on the general physical principles and the potential for understanding living matter, but also on details of practical data extraction and analysis, discussing limitations, interpretation, and comparison across different experimental realisations and theoretical frameworks. Particularly relevant results are introduced as examples. While this Perspective describes living matter from a physical perspective, highlighting experimental and theoretical physics techniques relevant for such systems, it is also meant to serve as a solid starting point for researchers in the life sciences interested in the implementation of biophysical methods.
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Affiliation(s)
- Shane Scott
- Institute of Physiology, Kiel University, Hermann-Rodewald-Straße 5, 24118 Kiel, Germany
| | - Matthias Weiss
- Experimental Physics I, University of Bayreuth, Universitätsstr. 30, D-95447 Bayreuth, Germany
| | - Christine Selhuber-Unkel
- Institute for Molecular Systems Engineering, Heidelberg University, D-69120 Heidelberg, Germany.,Max Planck School Matter to Life, Jahnstraße 29, D-69120 Heidelberg, Germany
| | - Younes F Barooji
- Niels Bohr Institute, Blegdamsvej 17, DK-2100 Copenhagen, Denmark.
| | - Adal Sabri
- Experimental Physics I, University of Bayreuth, Universitätsstr. 30, D-95447 Bayreuth, Germany
| | - Janine T Erler
- BRIC, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 Copenhagen, Denmark.
| | - Ralf Metzler
- Institute of Physics and Astronomy, University of Potsdam, Karl-Liebknecht Str. 24/25, D-14476 Potsdam, Germany.,Asia Pacific Center for Theoretical Physics, Pohang 37673, Republic of Korea
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54
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Zaman MA, Padhy P, Wu M, Ren W, Jensen MA, Davis RW, Hesselink L. Controlled Transport of Individual Microparticles Using Dielectrophoresis. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:101-110. [PMID: 36541659 PMCID: PMC10516752 DOI: 10.1021/acs.langmuir.2c02235] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
A dielectrophoretic device employing a planar array of microelectrodes is designed for controlled transport of individual microparticles. By exciting the electrodes in sequence, a moving dielectrophoretic force is created that can drag a particle across the electrodes in a straight line. The electrode shapes are designed to counter any lateral drift of the trapped particle during transport. This facilitates single particle transport by creating a narrow two-dimensional corridor for the moving dielectrophoretic force to operate on. The design and analysis processes are discussed in detail. Numerical simulations are performed to calculate the electromagnetic field distribution and the generated dielectrophoretic force near the electrodes. The Langevin equation is used for analyzing the trajectory of a microparticle under the influence of the external forces. The simulations show how the designed electrode geometry produces the necessary lateral confinement required for successful particle transport. Finally, experimental results are presented showing controlled bidirectional linear transport of single polystyrene beads of radius 10 and 5 μm for a distances 840 and 1100 μm, respectively. The capabilities of the proposed platform make it suitable for micro total analysis systems (μTAS) and lab-on-a-chip (LOC) applications.
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Affiliation(s)
- Mohammad Asif Zaman
- Department of Electrical Engineering, Stanford University, Stanford, California94305, United States
| | - Punnag Padhy
- Department of Electrical Engineering, Stanford University, Stanford, California94305, United States
| | - Mo Wu
- Department of Electrical Engineering, Stanford University, Stanford, California94305, United States
| | - Wei Ren
- Department of Electrical Engineering, Stanford University, Stanford, California94305, United States
| | - Michael Anthony Jensen
- Department of Biochemistry, Stanford University, Stanford, California94305, United States
| | - Ronald W Davis
- Department of Biochemistry, Stanford University, Stanford, California94305, United States
| | - Lambertus Hesselink
- Department of Electrical Engineering, Stanford University, Stanford, California94305, United States
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55
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Mukherjee S, Mepperi J, Sahu P, Barman DK, Kotamarthi HC. Single-Molecule Optical Tweezers As a Tool for Delineating the Mechanisms of Protein-Processing Mechanoenzymes. ACS OMEGA 2023; 8:87-97. [PMID: 36643560 PMCID: PMC9835622 DOI: 10.1021/acsomega.2c06044] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Accepted: 12/06/2022] [Indexed: 06/17/2023]
Abstract
Mechanoenzymes convert chemical energy from the hydrolysis of nucleotide triphosphates to mechanical energy for carrying out cellular functions ranging from DNA unwinding to protein degradation. Protein-processing mechanoenzymes either remodel the protein structures or translocate them across cellular compartments in an energy-dependent manner. Optical-tweezer-based single-molecule force spectroscopy assays have divulged information on details of chemo-mechanical coupling, directed motion, as well as mechanical forces these enzymes are capable of generating. In this review, we introduce the working principles of optical tweezers as a single-molecule force spectroscopy tool and assays developed to decipher the properties such as unfolding kinetics, translocation velocities, and step sizes by protein remodeling mechanoenzymes. We focus on molecular motors involved in protein degradation and disaggregation, i.e., ClpXP, ClpAP, and ClpB, and insights provided by single-molecule assays on kinetics and stepping dynamics during protein unfolding and translocation. Cellular activities such as protein synthesis, folding, and translocation across membranes are also energy dependent, and the recent single-molecule studies decoding the role of mechanical forces on these processes have been discussed.
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56
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Sanghavi P, Rai A, Mallik R. In Vivo Trapping of Latex Bead Phagosomes for Quantitative Force Measurements. Methods Mol Biol 2023; 2623:187-200. [PMID: 36602687 DOI: 10.1007/978-1-0716-2958-1_12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Optical trapping of organelles inside cells is a powerful technique for directly measuring the forces generated by motor proteins when they are transporting the organelle in the form of a "cargo". Such experiments provide an understanding of how multiple motors (similar or dissimilar) function in their endogenous environment. Here we describe the use of latex bead phagosomes ingested by macrophage cells as a model cargo for optical trap-based force measurements. A protocol for quantitative force measurements of microtubule-based motors (dynein and kinesins) inside macrophage cells is provided.
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Affiliation(s)
- Paulomi Sanghavi
- Department of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra, India.
| | - Arpan Rai
- Department of Molecular Life Sciences, University of Zurich, Zürich, Switzerland
| | - Roop Mallik
- Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Mumbai, Maharashtra, India
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57
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Stephens HM, Kirkpatrick E, Mallis RJ, Reinherz EL, Lang MJ. Characterizing Biophysical Parameters of Single TCR-pMHC Interactions Using Optical Tweezers. Methods Mol Biol 2023; 2654:375-392. [PMID: 37106195 DOI: 10.1007/978-1-0716-3135-5_24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/29/2023]
Abstract
αβ T cells are mechanosensors that leverage bioforces during immune surveillance for highly sensitive and specific antigen discrimination. Single-molecule studies are used to profile the initial TCRαβ-pMHC binding event, and various biophysical parameters can be identified. Isolating purified TCRαβ and pMHC molecules on a coverslip allows for direct measurements of the kinetics and conformational changes in the system and removes cellular components along the load pathway that may interfere with or mask subtle changes. Optical tweezers provide high resolution position and force information that map the bonding profile, including catch bond, and the ability to measure distinct conformational changes driven by forces. The present method describes the single-molecule optical tweezers assay setup, considerations, and execution. This model can be used for various TCR-pMHC pairs or expanded to measure a wide variety of receptor-ligand interactions operative in multiple biological systems.
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Affiliation(s)
- Hannah M Stephens
- Department of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, TN, USA
| | - Evan Kirkpatrick
- Department of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, TN, USA
| | - Robert J Mallis
- Laboratory of Immunobiology and Department of Medical Oncology, Dana-Farber Cancer Institute, and Department of Dermatology, Harvard Medical School, Boston, MA, USA
| | - Ellis L Reinherz
- Laboratory of Immunobiology and Department of Medical Oncology, Dana-Farber Cancer Institute and Department of Medicine, Harvard Medical School, Boston, MA, USA
| | - Matthew J Lang
- Department of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, TN, USA.
- Department of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA.
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58
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Halma MTJ, Tuszynski JA, Wuite GJL. Optical tweezers for drug discovery. Drug Discov Today 2023; 28:103443. [PMID: 36396117 DOI: 10.1016/j.drudis.2022.103443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2022] [Revised: 09/23/2022] [Accepted: 11/09/2022] [Indexed: 11/16/2022]
Abstract
The time taken and the cost of producing novel therapeutic drugs presents a significant burden - a typical target-based drug discovery process involves computational screening of drug libraries, compound assays and expensive clinical trials. This review summarises the value of dynamic conformational information obtained by optical tweezers and how this information can target 'undruggable' proteins. Optical tweezers provide insights into the link between biological mechanisms and structural conformations, which can be used in drug discovery. Developing workflows including software and sample preparation will improve throughput, enabling adoption of optical tweezers in biopharma. As a complementary tool, optical tweezers increase the number of drug candidates, improve the understanding of a target's complex structural dynamics and elucidate interactions between compounds and their targets.
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Affiliation(s)
- Matthew T J Halma
- Department of Physics and Astronomy, Vrije Universiteit Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands; LUMICKS B.V, Paalbergweg 3, 1105 AG Amsterdam, The Netherlands
| | - Jack A Tuszynski
- Department of Physics, University of Alberta, 116 St 85 Ave, Edmonton, Alberta T6G 2R3, Canada
| | - Gijs J L Wuite
- Department of Physics and Astronomy, Vrije Universiteit Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands.
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59
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Lin W, Zhang S, Liu B, Zhang H, Liu H, Han J, Liu F. Optical trapping and manipulation of massive particles based on spatial diffraction of a 45° tilted fiber Bragg grating. OPTICS EXPRESS 2022; 30:46106-46120. [PMID: 36558573 DOI: 10.1364/oe.476228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Accepted: 11/16/2022] [Indexed: 06/17/2023]
Abstract
In this work, we proposed an optical trapping and manipulation technology based on spatial diffraction of 45° tilted fiber Bragg grating (TFBG). The length of the line-shape-facula of the TFBG diffraction light can be as large as tens of millimeters, which enables the TFBG trapping system control massive dielectric particles. We analyze the light distribution of the spatial diffraction by using the volume current method (VCM) and established a theoretical model to analyze the optical trapping force of TFBG based on the ray tracing method (RTM). Then, we designed several optical trapping schemes, with two-, three- and four-TFBGs respectively. Numeral simulation indicates that only the scheme with axisymmetric layout of TFBGs can achieve stable particle trapping. We comprehensively analyze the trapping force distribution of four- TFBG scheme with different influence factors. In addition, the rotation manipulation based on the two- and four- TFBGs schemes are also demonstrated. The proposed optical trapping technology open a new route for massive particles trapping and manipulation.
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60
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Saha S, Hong C, Fomra D, Ozgur U, Avrutin V, Ndukaife JC, Kinsey N. On-chip integrated quantum emitter with 'trap-enhance-guide': a simulation approach. OPTICS EXPRESS 2022; 30:48051-48060. [PMID: 36558720 DOI: 10.1364/oe.477164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Accepted: 12/05/2022] [Indexed: 06/17/2023]
Abstract
To address the challenges of developing a scalable system of an on-chip integrated quantum emitter, we propose to leverage the loss in our hybrid plasmonic-photonic structure to simultaneously achieve Purcell enhancement as well as on-chip maneuvering of nanoscale emitter via optical trapping with guided excitation-emission routes. In this report, we have analyzed the feasibility of the functional goals of our proposed system in the metric of trapping strength (∼8KBT), Purcell factor (>1000∼), and collection efficiency (∼10%). Once realized, the scopes of the proposed device can be advanced to develop a scalable platform for integrated quantum technology.
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61
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Rail induced lateral migration of particles across intact co-flowing liquids. Sci Rep 2022; 12:21775. [PMID: 36526798 PMCID: PMC9758194 DOI: 10.1038/s41598-022-26387-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 12/14/2022] [Indexed: 12/23/2022] Open
Abstract
This paper presents a rail guided method to apply a Layer-by-Layer (LbL) coating on particles in a microfluidic device. The passive microfluidic approach allows handling suspensions of particles to be coated in the system. The trajectory of the particles is controlled using engraved rails, inducing lateral movement of particles while keeping the axially oriented liquid flow (and the interface of different liquids) undisturbed. The depth and angle of the rails together with the liquid velocity were studied to determine a workable geometry of the device. A discontinuous LbL coating procedure was converted into one continuous process, demonstrating that the chip can perform seven consecutive steps normally conducted in batch operation, further easily extendable to larger cycle numbers. Coating of the particles with two bilayers was confirmed by fluorescence microscopy.
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62
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Jory M, Donnarumma D, Blanc C, Bellouma K, Fort A, Vachier I, Casanellas L, Bourdin A, Massiera G. Mucus from human bronchial epithelial cultures: rheology and adhesion across length scales. Interface Focus 2022; 12:20220028. [PMID: 36330325 PMCID: PMC9560788 DOI: 10.1098/rsfs.2022.0028] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Accepted: 08/17/2022] [Indexed: 10/16/2023] Open
Abstract
Mucus is a viscoelastic aqueous fluid that participates in the protective barrier of many mammals' epithelia. In the airways, together with cilia beating, mucus rheological properties are crucial for lung mucociliary function, and, when impaired, potentially participate in the onset and progression of chronic obstructive pulmonary disease (COPD). Samples of human mucus collected in vivo are inherently contaminated and are thus poorly characterized. Human bronchial epithelium (HBE) cultures, differentiated from primary cells at an air-liquid interface, are highly reliable models to assess non-contaminated mucus. In this paper, the viscoelastic properties of HBE mucus derived from healthy subjects, patients with COPD and from smokers are measured. Hallmarks of shear-thinning and elasticity are obtained at the macroscale, whereas at the microscale mucus appears as a heterogeneous medium showing an almost Newtonian behaviour in some extended regions and an elastic behaviour close to boundaries. In addition, we developed an original method to probe mucus adhesion at the microscopic scale using optical tweezers. The measured adhesion forces and the comparison with mucus-simulants rheology as well as mucus imaging collectively support a structure composed of a network of elastic adhesive filaments with a large mesh size, embedded in a very soft gel.
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Affiliation(s)
- Myriam Jory
- Laboratoire Charles Coulomb, Université de Montpellier and CNRS UMR 5221, 34095 Montpellier, France
| | - Dario Donnarumma
- Laboratoire Charles Coulomb, Université de Montpellier and CNRS UMR 5221, 34095 Montpellier, France
| | - Christophe Blanc
- Laboratoire Charles Coulomb, Université de Montpellier and CNRS UMR 5221, 34095 Montpellier, France
| | - Karim Bellouma
- Laboratoire Charles Coulomb, Université de Montpellier and CNRS UMR 5221, 34095 Montpellier, France
| | - Aurélie Fort
- Inserm U1046, Université de Montpellier, Respiratory Disease, CHU Montpellier, 34295 Montpellier, France
- Médecine Biologie Méditerranée, Montpellier, France
| | - Isabelle Vachier
- Inserm U1046, Université de Montpellier, Respiratory Disease, CHU Montpellier, 34295 Montpellier, France
- Médecine Biologie Méditerranée, Montpellier, France
| | - Laura Casanellas
- Laboratoire Charles Coulomb, Université de Montpellier and CNRS UMR 5221, 34095 Montpellier, France
| | - Arnaud Bourdin
- Inserm U1046, Université de Montpellier, Respiratory Disease, CHU Montpellier, 34295 Montpellier, France
| | - Gladys Massiera
- Laboratoire Charles Coulomb, Université de Montpellier and CNRS UMR 5221, 34095 Montpellier, France
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63
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Kishimoto T, Masui K, Minoshima W, Hosokawa C. Recent advances in optical manipulation of cells and molecules for biological science. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C: PHOTOCHEMISTRY REVIEWS 2022. [DOI: 10.1016/j.jphotochemrev.2022.100554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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64
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Cheppali SK, Dharan R, Sorkin R. Forces of Change: Optical Tweezers in Membrane Remodeling Studies. J Membr Biol 2022; 255:677-690. [PMID: 35616705 DOI: 10.1007/s00232-022-00241-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Accepted: 04/22/2022] [Indexed: 12/24/2022]
Abstract
Optical tweezers allow precise measurement of forces and distances with piconewton and nanometer precision, and have thus been instrumental in elucidating the mechanistic details of various biological processes. Some examples include the characterization of motor protein activity, studies of protein-DNA interactions, and characterizing protein folding trajectories. The use of optical tweezers (OT) to study membranes is, however, much less abundant. Here, we review biophysical studies of membranes that utilize optical tweezers, with emphasis on various assays that have been developed and their benefits and limitations. First, we discuss assays that employ membrane-coated beads, and overview protein-membrane interactions studies based on manipulation of such beads. We further overview a body of studies that make use of a very powerful experimental tool, the combination of OT, micropipette aspiration, and fluorescence microscopy, that allow detailed studies of membrane curvature generation and sensitivity. Finally, we describe studies focused on membrane fusion and fission. We then summarize the overall progress in the field and outline future directions.
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Affiliation(s)
- Sudheer K Cheppali
- Raymond and Beverly Sackler Faculty of Exact Sciences, School of Chemistry, Tel Aviv University, Tel Aviv, Israel.,Center for Physics and Chemistry of Living Systems, Tel Aviv University, Tel Aviv, Israel.,Center for Nanoscience and Nanotechnology, Tel Aviv University, Tel Aviv, Israel.,Center for Light-Matter Interaction, Tel Aviv University, Tel Aviv, Israel
| | - Raviv Dharan
- Raymond and Beverly Sackler Faculty of Exact Sciences, School of Chemistry, Tel Aviv University, Tel Aviv, Israel.,Center for Physics and Chemistry of Living Systems, Tel Aviv University, Tel Aviv, Israel.,Center for Nanoscience and Nanotechnology, Tel Aviv University, Tel Aviv, Israel.,Center for Light-Matter Interaction, Tel Aviv University, Tel Aviv, Israel
| | - Raya Sorkin
- Raymond and Beverly Sackler Faculty of Exact Sciences, School of Chemistry, Tel Aviv University, Tel Aviv, Israel. .,Center for Physics and Chemistry of Living Systems, Tel Aviv University, Tel Aviv, Israel. .,Center for Nanoscience and Nanotechnology, Tel Aviv University, Tel Aviv, Israel. .,Center for Light-Matter Interaction, Tel Aviv University, Tel Aviv, Israel.
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65
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Oktafiani F, Chen JQ, Lee PT. Ultra-compact Archimedes spiral plasmonic lens with a circular groove for low power optical trapping in the far-field region. OPTICS EXPRESS 2022; 30:44018-44028. [PMID: 36523086 DOI: 10.1364/oe.475028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Accepted: 11/04/2022] [Indexed: 06/17/2023]
Abstract
Particle levitation is crucial in optical trapping considering contamination and alteration of the character of the particle due to physical contact with the structure. A strong field gradient along the optical axis is required in this case. To manipulate the particle at a distance from the surface, we propose an Archimedes spiral plasmonic lens with a circular groove (CG-ASPL). The optical properties and parameters influencing the trapping performance of CG-ASPL are fully analyzed and discussed. By illuminating the structure with circular polarization and structure optimization, we can reduce the required optical power down to 2.4 mW for trapping particle of 1 µm in diameter with groove width and height of 100 and 125 nm, respectively. The particle can be stably trapped with trapping potential of 4138 kBT/W in the far-field region (1.1λ) owing to constructive interference of the scattered SPP waves. Furthermore, this structure is ultra-compact with a size of about 6.7 µm in diameter. We believe the results demonstrated in this work would be very useful for lab-on-a-chip applications and many others.
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66
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Zang Y, Chang Q, Wang X, Su C, Wu P, Lin W. Natural oscillation frequencies of a Rayleigh sphere levitated in standing acoustic waves. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2022; 152:2916. [PMID: 36456261 DOI: 10.1121/10.0015142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Accepted: 10/26/2022] [Indexed: 06/17/2023]
Abstract
Acoustic levitation is an important method of container-free processing, which counteracts gravity through exerting the acoustic radiation force on levitated objects. The Gorkov potential function is used to simplify the calculation of the acoustic radiation force acting on a Rayleigh sphere whose radius is much smaller than the wave length. For the case of a plane standing wave levitation system, a systematic analysis of the sphere dynamics is provided in the axial direction, assuming a small perturbation around the stable equilibrium locations. A generalized extension to an arbitrary standing wave field is provided, which gives formal expressions of the axial and transverse natural oscillation frequencies for the sphere. Particular emphasis is put on the natural oscillation frequencies with and without taking gravity into consideration. The computational results for Gauss and Bessel standing waves are provided as two special cases, which show that the transverse natural oscillation frequency will be overestimated when neglecting gravity, especially for a sphere with a relatively large density. Corresponding experiments are conducted to verify the dependence of the transverse natural oscillation frequency on the sphere density. The results obtained in this work are expected to provide a theoretical guide for enhancing the levitation stability and inversing the physical parameters from the sphere dynamics.
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Affiliation(s)
- Yuchen Zang
- Institute of Acoustics, Chinese Academy of Sciences, Beijing, 100190, China
| | - Qin Chang
- Institute of Acoustics, Chinese Academy of Sciences, Beijing, 100190, China
| | - Xiaozhen Wang
- Institute of Acoustics, Chinese Academy of Sciences, Beijing, 100190, China
| | - Chang Su
- Institute of Acoustics, Chinese Academy of Sciences, Beijing, 100190, China
| | - Pengfei Wu
- Institute of Acoustics, Chinese Academy of Sciences, Beijing, 100190, China
| | - Weijun Lin
- Institute of Acoustics, Chinese Academy of Sciences, Beijing, 100190, China
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Oh I, Song J, Hyun HR, Lee SH, Kim JS. Brownian ratchet for directional nanoparticle transport by repetitive stretch-relaxation of DNA. Phys Rev E 2022; 106:054117. [PMID: 36559375 DOI: 10.1103/physreve.106.054117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Accepted: 10/13/2022] [Indexed: 06/17/2023]
Abstract
Brownian motion subject to a periodic and asymmetric potential can be biased by external, nonequilibrium fluctuations, leading to directional movement of Brownian particles. Sequence-dependent flexibility variation along double-stranded DNA has been proposed as a tool to develop periodic and asymmetric potentials for DNA binding of cationic nanoparticles with sizes below tens of nanometers. Here, we propose that repetitive stretching and relaxation of a long, double-stranded DNA molecule with periodic flexibility gradient can induce nonequilibrium fluctuations that tune the amplitude of asymmetric potentials for DNA-nanoparticle binding to result in directional transport of nanometer-sized particles along DNA. Realization of the proposed Brownian ratchet was proven by Brownian dynamics simulations of coarse-grained models of a single, long DNA molecule with flexibility variation and a cationic nanoparticle.
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Affiliation(s)
- Inrok Oh
- LG Chem Ltd, LG Science Park, Seoul 07796, Republic of Korea
| | - Jeongeun Song
- Department of Chemistry and Nanoscience, Ewha Womans University, Seoul 03760, Republic of Korea
| | - Hye Ree Hyun
- Department of Chemistry and Nanoscience, Ewha Womans University, Seoul 03760, Republic of Korea
| | - Sang Hak Lee
- Department of Chemistry, Pusan National University, Busan 46241, Republic of Korea
| | - Jun Soo Kim
- Department of Chemistry and Nanoscience, Ewha Womans University, Seoul 03760, Republic of Korea
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68
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Schwietert F, Volkov VA, Huis In 't Veld PJ, Dogterom M, Musacchio A, Kierfeld J. Strain stiffening of Ndc80 complexes attached to microtubule plus ends. Biophys J 2022; 121:4048-4062. [PMID: 36199251 PMCID: PMC9675032 DOI: 10.1016/j.bpj.2022.09.039] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Revised: 07/28/2022] [Accepted: 08/27/2022] [Indexed: 11/28/2022] Open
Abstract
In the mitotic spindle, microtubules attach to chromosomes via kinetochores. The microtubule-binding Ndc80 complex is an integral part of kinetochores, and is essential for kinetochores to attach to microtubules and to transmit forces from dynamic microtubule ends to the chromosomes. The Ndc80 complex has a rod-like appearance with globular domains at its ends that are separated by a long coiled coil. Its mechanical properties are considered important for the dynamic interaction between kinetochores and microtubules. Here, we present a novel method that allows us to time trace the effective stiffness of Ndc80 complexes following shortening microtubule ends against applied force in optical trap experiments. Applying this method to wild-type Ndc80 and three variants (calponin homology (CH) domains mutated or Hec1 tail unphosphorylated, phosphorylated, or truncated), we reveal that each variant exhibits strain stiffening; i.e., the effective stiffness increases under tension that is built up by a depolymerizing microtubule. The strain stiffening relation is roughly linear and independent of the state of the microtubule. We introduce structure-based models that show that the strain stiffening can be traced back to the specific architecture of the Ndc80 complex with a characteristic flexible kink, to thermal fluctuations of the microtubule, and to the bending elasticity of flaring protofilaments, which exert force to move the Ndc80 complexes. Our model accounts for changes in the amount of load-bearing attachments at various force levels and reproduces the roughly linear strain stiffening behavior, highlighting the importance of force-dependent binding affinity.
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Affiliation(s)
| | - Vladimir A Volkov
- School of Biological and Behavioural Sciences, Queen Mary University of London, London, UK; Department of Bionanoscience, Faculty of Applied Sciences, Delft University of Technology, Delft, Netherlands
| | - Pim J Huis In 't Veld
- Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, Dortmund, Germany
| | - Marileen Dogterom
- Department of Bionanoscience, Faculty of Applied Sciences, Delft University of Technology, Delft, Netherlands
| | - Andrea Musacchio
- Department of Mechanistic Cell Biology, Max Planck Institute of Molecular Physiology, Dortmund, Germany
| | - Jan Kierfeld
- Physics Department, TU Dortmund University, Dortmund, Germany.
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69
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Zaman MA, Hesselink L. Dynamically controllable plasmonic tweezers using C-shaped nano-engravings. APPLIED PHYSICS LETTERS 2022; 121:181108. [PMID: 36340998 PMCID: PMC9635921 DOI: 10.1063/5.0123268] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 10/17/2022] [Indexed: 06/01/2023]
Abstract
A near-field optical trapping scheme using plasmonic C-shaped nano-engraving is presented. Utilizing the polarization sensitivity of the C-structure, a mechanism is proposed for dynamically controlling the electric field, the associated trapping force, and the plasmonic heating. Electromagnetic analysis and particle dynamics simulations are performed to verify the viability of the approach. The designed structure is fabricated and experimentally tested. Polarization control of the excitation light is achieved through the use of a half-wave plate. Experimental results are presented that show the functioning implementation of the dynamically adjustable plasmonic tweezers. The dynamic controllability can allow trapping to be maintained with lower field strengths, which reduces photo-thermal effects. Thus, the probability of thermal damage can be reduced when handling sensitive specimens.
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Affiliation(s)
- Mohammad Asif Zaman
- Department of Electrical Engineering, Stanford University, Stanford, California 94305, USA
| | - Lambertus Hesselink
- Department of Electrical Engineering, Stanford University, Stanford, California 94305, USA
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70
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Optical trapping and fluorescence control with vectorial structured light. Sci Rep 2022; 12:17690. [PMID: 36271234 DOI: 10.1038/s41598-022-21224-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 09/23/2022] [Indexed: 11/08/2022] Open
Abstract
Here we functionalized micro-scaled polymer beads with nano-scaled quantum dots and demonstrate optical trapping and tweezing, with in-situ fluorescence measurement, in an all-digital all-optical configuration. We outline the chemistry required to facilitate this, from deactivating the optical trapping environment to size, adhesion and agglomeration control. We introduce a novel holographic optical trapping set-up that leverages on vectorially structured light, allowing for the delivery of tuneable forms of light from purely scalar to purely vector, including propagation invariant flat-top beams for uniform illumination and tailored intensity gradient landscapes. Finally, we show how this has the potential to quench bleaching in a single wavelength trap by linear (spatial mode) rather than non-linear effects, advancing the nascent field of optics for chemistry.
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71
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Tsai FC, Henderson JM, Jarin Z, Kremneva E, Senju Y, Pernier J, Mikhajlov O, Manzi J, Kogan K, Le Clainche C, Voth GA, Lappalainen P, Bassereau P. Activated I-BAR IRSp53 clustering controls the formation of VASP-actin-based membrane protrusions. SCIENCE ADVANCES 2022; 8:eabp8677. [PMID: 36240267 PMCID: PMC9565809 DOI: 10.1126/sciadv.abp8677] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Filopodia are actin-rich membrane protrusions essential for cell morphogenesis, motility, and cancer invasion. How cells control filopodium initiation on the plasma membrane remains elusive. We performed experiments in cellulo, in vitro, and in silico to unravel the mechanism of filopodium initiation driven by the membrane curvature sensor IRSp53 (insulin receptor substrate protein of 53 kDa). We showed that full-length IRSp53 self-assembles into clusters on membranes depending on PIP2. Using well-controlled in vitro reconstitution systems, we demonstrated that IRSp53 clusters recruit the actin polymerase VASP (vasodilator-stimulated phosphoprotein) to assemble actin filaments locally on membranes, leading to the generation of actin-filled membrane protrusions reminiscent of filopodia. By pulling membrane nanotubes from live cells, we observed that IRSp53 can only be enriched and trigger actin assembly in nanotubes at highly dynamic membrane regions. Our work supports a regulation mechanism of IRSp53 in its attributes of curvature sensation and partner recruitment to ensure a precise spatial-temporal control of filopodium initiation.
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Affiliation(s)
- Feng-Ching Tsai
- Institut Curie, Université PSL, Sorbonne Université, CNRS UMR168, Laboratoire Physico-Chimie Curie, 75005 Paris, France
- Corresponding author. (F.-C.T.); (G.A.V.); (P.L.); (P.B.)
| | - J. Michael Henderson
- Institut Curie, Université PSL, Sorbonne Université, CNRS UMR168, Laboratoire Physico-Chimie Curie, 75005 Paris, France
- Unité de Trafic Membranaire et Pathogénèse, Département de Biologie Cellulaire et Infection, Institut Pasteur, Université de Paris, CNRS UMR 3691, 75015 Paris, France
| | - Zack Jarin
- Pritzker School for Molecular Engineering, University of Chicago, Chicago, IL 60637, USA
| | - Elena Kremneva
- Institute of Biotechnology and Helsinki Institute of Life Sciences, University of Helsinki, P.O. Box 56, 00014 Helsinki, Finland
| | - Yosuke Senju
- Research Institute for Interdisciplinary Science (RIIS), Okayama University, Okayama, Japan
| | - Julien Pernier
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France
| | - Oleg Mikhajlov
- Institut Curie, Université PSL, Sorbonne Université, CNRS UMR168, Laboratoire Physico-Chimie Curie, 75005 Paris, France
| | - John Manzi
- Institut Curie, Université PSL, Sorbonne Université, CNRS UMR168, Laboratoire Physico-Chimie Curie, 75005 Paris, France
| | - Konstantin Kogan
- Institute of Biotechnology and Helsinki Institute of Life Sciences, University of Helsinki, P.O. Box 56, 00014 Helsinki, Finland
| | - Christophe Le Clainche
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France
| | - Gregory A. Voth
- Department of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, University of Chicago, Chicago, IL 60637, USA
- Corresponding author. (F.-C.T.); (G.A.V.); (P.L.); (P.B.)
| | - Pekka Lappalainen
- Institute of Biotechnology and Helsinki Institute of Life Sciences, University of Helsinki, P.O. Box 56, 00014 Helsinki, Finland
- Corresponding author. (F.-C.T.); (G.A.V.); (P.L.); (P.B.)
| | - Patricia Bassereau
- Institut Curie, Université PSL, Sorbonne Université, CNRS UMR168, Laboratoire Physico-Chimie Curie, 75005 Paris, France
- Corresponding author. (F.-C.T.); (G.A.V.); (P.L.); (P.B.)
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72
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Tsai FC, Henderson JM, Jarin Z, Kremneva E, Senju Y, Pernier J, Mikhajlov O, Manzi J, Kogan K, Le Clainche C, Voth GA, Lappalainen P, Bassereau P. Activated I-BAR IRSp53 clustering controls the formation of VASP-actin-based membrane protrusions. SCIENCE ADVANCES 2022; 8:eabp8677. [PMID: 36240267 DOI: 10.1101/2022.03.04.483020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Filopodia are actin-rich membrane protrusions essential for cell morphogenesis, motility, and cancer invasion. How cells control filopodium initiation on the plasma membrane remains elusive. We performed experiments in cellulo, in vitro, and in silico to unravel the mechanism of filopodium initiation driven by the membrane curvature sensor IRSp53 (insulin receptor substrate protein of 53 kDa). We showed that full-length IRSp53 self-assembles into clusters on membranes depending on PIP2. Using well-controlled in vitro reconstitution systems, we demonstrated that IRSp53 clusters recruit the actin polymerase VASP (vasodilator-stimulated phosphoprotein) to assemble actin filaments locally on membranes, leading to the generation of actin-filled membrane protrusions reminiscent of filopodia. By pulling membrane nanotubes from live cells, we observed that IRSp53 can only be enriched and trigger actin assembly in nanotubes at highly dynamic membrane regions. Our work supports a regulation mechanism of IRSp53 in its attributes of curvature sensation and partner recruitment to ensure a precise spatial-temporal control of filopodium initiation.
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Affiliation(s)
- Feng-Ching Tsai
- Institut Curie, Université PSL, Sorbonne Université, CNRS UMR168, Laboratoire Physico-Chimie Curie, 75005 Paris, France
| | - J Michael Henderson
- Institut Curie, Université PSL, Sorbonne Université, CNRS UMR168, Laboratoire Physico-Chimie Curie, 75005 Paris, France
- Unité de Trafic Membranaire et Pathogénèse, Département de Biologie Cellulaire et Infection, Institut Pasteur, Université de Paris, CNRS UMR 3691, 75015 Paris, France
| | - Zack Jarin
- Pritzker School for Molecular Engineering, University of Chicago, Chicago, IL 60637, USA
| | - Elena Kremneva
- Institute of Biotechnology and Helsinki Institute of Life Sciences, University of Helsinki, P.O. Box 56, 00014 Helsinki, Finland
| | - Yosuke Senju
- Research Institute for Interdisciplinary Science (RIIS), Okayama University, Okayama, Japan
| | - Julien Pernier
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France
| | - Oleg Mikhajlov
- Institut Curie, Université PSL, Sorbonne Université, CNRS UMR168, Laboratoire Physico-Chimie Curie, 75005 Paris, France
| | - John Manzi
- Institut Curie, Université PSL, Sorbonne Université, CNRS UMR168, Laboratoire Physico-Chimie Curie, 75005 Paris, France
| | - Konstantin Kogan
- Institute of Biotechnology and Helsinki Institute of Life Sciences, University of Helsinki, P.O. Box 56, 00014 Helsinki, Finland
| | - Christophe Le Clainche
- Université Paris-Saclay, CEA, CNRS, Institute for Integrative Biology of the Cell (I2BC), 91198 Gif-sur-Yvette, France
| | - Gregory A Voth
- Department of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, University of Chicago, Chicago, IL 60637, USA
| | - Pekka Lappalainen
- Institute of Biotechnology and Helsinki Institute of Life Sciences, University of Helsinki, P.O. Box 56, 00014 Helsinki, Finland
| | - Patricia Bassereau
- Institut Curie, Université PSL, Sorbonne Université, CNRS UMR168, Laboratoire Physico-Chimie Curie, 75005 Paris, France
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73
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Nalupurackal G, Gunaseelan M, Roy S, Lokesh M, Kumar S, Vaippully R, Singh R, Roy B. A hydro-thermophoretic trap for microparticles near a gold-coated substrate. SOFT MATTER 2022; 18:6825-6835. [PMID: 36040245 PMCID: PMC7613615 DOI: 10.1039/d2sm00627h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Optical tweezers have revolutionised micromanipulation from physics and biology to material science. However, the high laser power involved in optical trapping can damage biological samples. In this context, indirect trapping of microparticles and objects using fluid flow fields has assumed great importance. It has recently been shown that cells and particles can be turned in the pitch sense by opto-plasmonic heating of a gold surface constituting one side of a sample chamber. We extend that work to place two such hotspots in close proximity to each other to form a very unique configuration of flow fields forming an effective quasi-three-dimensional 'trap', assisted by thermophoresis. This is effectively a harmonic trap confining particles in all three dimensions without relying on other factors to confine the particles close to the surface. We use this to show indirect trapping of different types of upconverting particles and cells, and also show that we can approach a trap stiffness of 40 fN μm-1 indicating a weak confinement regime without relying on feedback.
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Affiliation(s)
- Gokul Nalupurackal
- Department of Physics, Quantum Centres in Diamond and Emergent Materials (QuCenDiEM)-group, Micro Nano and Bio-Fluidics (MNBF)-Group, IIT Madras, Chennai 600036, India.
| | - M Gunaseelan
- Department of Physics, Quantum Centres in Diamond and Emergent Materials (QuCenDiEM)-group, Micro Nano and Bio-Fluidics (MNBF)-Group, IIT Madras, Chennai 600036, India.
| | - Srestha Roy
- Department of Physics, Quantum Centres in Diamond and Emergent Materials (QuCenDiEM)-group, Micro Nano and Bio-Fluidics (MNBF)-Group, IIT Madras, Chennai 600036, India.
| | - Muruga Lokesh
- Department of Physics, Quantum Centres in Diamond and Emergent Materials (QuCenDiEM)-group, Micro Nano and Bio-Fluidics (MNBF)-Group, IIT Madras, Chennai 600036, India.
| | - Sumeet Kumar
- Department of Physics, Quantum Centres in Diamond and Emergent Materials (QuCenDiEM)-group, Micro Nano and Bio-Fluidics (MNBF)-Group, IIT Madras, Chennai 600036, India.
| | - Rahul Vaippully
- Department of Physics, Quantum Centres in Diamond and Emergent Materials (QuCenDiEM)-group, Micro Nano and Bio-Fluidics (MNBF)-Group, IIT Madras, Chennai 600036, India.
| | - Rajesh Singh
- Department of Physics, IIT Madras, Chennai 600036, India.
| | - Basudev Roy
- Department of Physics, Quantum Centres in Diamond and Emergent Materials (QuCenDiEM)-group, Micro Nano and Bio-Fluidics (MNBF)-Group, IIT Madras, Chennai 600036, India.
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74
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Zhang Z, Ahmed D. Light-driven high-precision cell adhesion kinetics. LIGHT, SCIENCE & APPLICATIONS 2022; 11:266. [PMID: 36100594 PMCID: PMC9470670 DOI: 10.1038/s41377-022-00963-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Existing single-cell adhesion kinetics methods are performed under conditions highly unlike the physiological cell adhesion conditions. Now, researchers have developed a new optical technique for high-precision measurement of cell lateral adhesion kinetics in complex clinical samples.
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Affiliation(s)
- Zhiyuan Zhang
- Acoustic Robotics Systems Laboratory, Institute of Robotics and Intelligent Systems, Department of Mechanical and Process Engineering, ETH Zurich, Säumerstrasse 4, CH-8803, Zurich, Switzerland
| | - Daniel Ahmed
- Acoustic Robotics Systems Laboratory, Institute of Robotics and Intelligent Systems, Department of Mechanical and Process Engineering, ETH Zurich, Säumerstrasse 4, CH-8803, Zurich, Switzerland.
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75
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Tsuji T, Doi K, Kawano S. Optical trapping in micro- and nanoconfinement systems: Role of thermo-fluid dynamics and applications. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C: PHOTOCHEMISTRY REVIEWS 2022. [DOI: 10.1016/j.jphotochemrev.2022.100533] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/09/2023]
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76
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Ma X, Nguyen NN, Nguyen AV. A review on quantifying the influence of lateral capillary interactions on the particle floatability and stability of particle-laden interfaces. Adv Colloid Interface Sci 2022; 307:102731. [DOI: 10.1016/j.cis.2022.102731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2022] [Revised: 07/05/2022] [Accepted: 07/06/2022] [Indexed: 11/29/2022]
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77
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Cytoplasmic forces functionally reorganize nuclear condensates in oocytes. Nat Commun 2022; 13:5070. [PMID: 36038550 PMCID: PMC9424315 DOI: 10.1038/s41467-022-32675-5] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Accepted: 08/05/2022] [Indexed: 12/21/2022] Open
Abstract
Cells remodel their cytoplasm with force-generating cytoskeletal motors. Their activity generates random forces that stir the cytoplasm, agitating and displacing membrane-bound organelles like the nucleus in somatic and germ cells. These forces are transmitted inside the nucleus, yet their consequences on liquid-like biomolecular condensates residing in the nucleus remain unexplored. Here, we probe experimentally and computationally diverse nuclear condensates, that include nuclear speckles, Cajal bodies, and nucleoli, during cytoplasmic remodeling of female germ cells named oocytes. We discover that growing mammalian oocytes deploy cytoplasmic forces to timely impose multiscale reorganization of nuclear condensates for the success of meiotic divisions. These cytoplasmic forces accelerate nuclear condensate collision-coalescence and molecular kinetics within condensates. Disrupting the forces decelerates nuclear condensate reorganization on both scales, which correlates with compromised condensate-associated mRNA processing and hindered oocyte divisions that drive female fertility. We establish that cytoplasmic forces can reorganize nuclear condensates in an evolutionary conserved fashion in insects. Our work implies that cells evolved a mechanism, based on cytoplasmic force tuning, to functionally regulate a broad range of nuclear condensates across scales. This finding opens new perspectives when studying condensate-associated pathologies like cancer, neurodegeneration and viral infections. Cytoskeletal activity generates mechanical forces known to agitate and displace membrane-bound organelles in the cytoplasm. In oocytes, Al Jord et al. discover that these cytoplasmic forces functionally remodel nuclear RNA-processing condensates across scales for developmental success.
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78
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Perez N, Preece D, Wilson R, Bezryadina A. Conservation of orbital angular momentum and polarization through biological waveguides. Sci Rep 2022; 12:14144. [PMID: 35986206 PMCID: PMC9391334 DOI: 10.1038/s41598-022-18483-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2022] [Accepted: 08/12/2022] [Indexed: 11/23/2022] Open
Abstract
A major roadblock to the development of photonic sensors is the scattering associated with many biological systems. We show the conservation of photonic states through optically self-arranged biological waveguides, for the first time, which can be implemented to transmit light through scattering media. The conservation of optical properties of light through biological waveguides allows for the transmission of high bandwidth information with low loss through scattering media. Here, we experimentally demonstrate the conservation of polarization state and orbital angular momentum of light through a self-arranged biological waveguide, several centimeters long, in a sheep red blood cell suspension. We utilize nonlinear optical effects to self-trap cells, which form waveguides at 532 nm and 780 nm wavelengths. Moreover, we use the formed waveguide channels to couple and guide probe beams without altering the information. The formed biological waveguides are in a sub-diffusive scattering regime, so the photons’ information degrades insignificantly over several centimeters of propagation through the scattering media. Our results show the potential of biological waveguides as a methodology for the development of novel photonic biosensors, biomedical devices that require optical wireless communication, and the development of new approaches to noninvasive biomedical imaging.
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79
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Català-Castro F, Schäffer E, Krieg M. Exploring cell and tissue mechanics with optical tweezers. J Cell Sci 2022; 135:jcs259355. [PMID: 35942913 DOI: 10.1242/jcs.259355] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Cellular and tissue biosystems emerge from the assembly of their constituent molecules and obtain a set of specific material properties. To measure these properties and understand how they influence cellular function is a central goal of mechanobiology. From a bottoms-up, physics or engineering point-of-view, such systems are a composition of basic mechanical elements. However, the sheer number and dynamic complexity of them, including active molecular machines and their emergent properties, makes it currently intractable to calculate how biosystems respond to forces. Because many diseases result from an aberrant mechanotransduction, it is thus essential to measure this response. Recent advances in the technology of optical tweezers have broadened their scope from single-molecule applications to measurements inside complex cellular environments, even within tissues and animals. Here, we summarize the basic optical trapping principles, implementations and calibration procedures that enable force measurements using optical tweezers directly inside cells of living animals, in combination with complementary techniques. We review their versatility to manipulate subcellular organelles and measure cellular frequency-dependent mechanics in the piconewton force range from microseconds to hours. As an outlook, we address future challenges to fully unlock the potential of optical tweezers for mechanobiology.
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Affiliation(s)
- Frederic Català-Castro
- Neurophotonics and Mechanical Systems Biology, ICFO, Institut de Ciències Fotòniques, 08860 Castelldefels, Spain
| | - Erik Schäffer
- Cellular Nanoscience, ZMBP, University of Tübingen, 72076 Tübingen, Germany
| | - Michael Krieg
- Neurophotonics and Mechanical Systems Biology, ICFO, Institut de Ciències Fotòniques, 08860 Castelldefels, Spain
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80
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Wang Y, Peng M, Cheng W, Peng Z, Cheng H, Ren X, Zang S, Shuai Y, Liu H, Wu J, Yang J. Manipulation force analysis of nanoparticles with ultra-high numerical aperture metalens. OPTICS EXPRESS 2022; 30:28479-28491. [PMID: 36299042 DOI: 10.1364/oe.462869] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Accepted: 07/01/2022] [Indexed: 06/16/2023]
Abstract
Metalens optical tweezers technology has several advantages for manipulating micro-nano particles and high integration. Here, we used particle swarm optimization (PSO) to design a novel metalens tweezer, which can get 3-dimensional trapping of particles. The numerical aperture (NA) of the metalens can reach 0.97 and the average focusing efficiency is 44%. Subsequently, we analyzed the optical force characteristics of SiO2 particles with a radius of 350 nm at the focal point of the achromatic metalens. We found the average maximum force of SiO2 particles in the x-direction and z-direction to be 0.88 pN and 0.72 pN, respectively. Compared with the dispersive metalens, it is beneficial in maintaining the constant of optical force, the motion state of trapped particles, and the stability of the trapping position.
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81
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Shen Y, Weitz DA, Forde NR, Shayegan M. Line optical tweezers as controllable micromachines: techniques and emerging trends. SOFT MATTER 2022; 18:5359-5365. [PMID: 35819100 DOI: 10.1039/d2sm00259k] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
In the past three decades, the technology of optical tweezers has made significant contributions in various scientific areas, including optics, photonics, and nanosciences. Breakthroughs include manipulating particles in both static and dynamic ways, particle sorting, and constructing controllable micromachines. Advances in shaping and controlling the laser beam profile enable control over the position and location of the trap, which has many possible applications. A line optical tweezer (LOT) can be created by rapidly moving a spot optical tweezer using a tool such as a galvanometer mirror or an acousto-optic modulator. By manipulating the intensity profile along the beam line to be asymmetric or non-uniform, the technique can be adapted to various specific applications. Among the many exciting applications of line optical tweezers, in this work, we discuss in detail applications of LOT, including probing colloidal interactions, transporting and sorting of colloidal microspheres, self-propelled motions, trapping anisotropic particles, exploring colloidal interactions at fluid-fluid interfaces, and building optical thermal ratchets. We further discuss prospective applications in each of these areas of soft matter, including polymeric and biological soft materials.
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Affiliation(s)
- Yinan Shen
- Department of Physics, Harvard University, Cambridge, Massachusetts, USA
| | - David A Weitz
- Department of Physics, Harvard University, Cambridge, Massachusetts, USA
- John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts, USA.
| | - Nancy R Forde
- Department of Physics, Simon Fraser University, Burnaby, BC, Canada
| | - Marjan Shayegan
- John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts, USA.
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82
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Yu D, Garcia A, Blum SA, Welsher KD. Growth Kinetics of Single Polymer Particles in Solution via Active-Feedback 3D Tracking. J Am Chem Soc 2022; 144:14698-14705. [PMID: 35867381 DOI: 10.1021/jacs.2c04990] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
The ability to directly observe chemical reactions at the single-molecule and single-particle level has enabled the discovery of behaviors otherwise obscured by ensemble averaging in bulk measurements. However powerful, a common restriction of these studies to date has been the absolute requirement to surface tether or otherwise immobilize the chemical reagent/reaction of interest. This constraint arose from a fundamental limitation of conventional microscopy techniques, which could not track molecules or particles rapidly diffusing in three dimensions, as occurs in solution. However, many chemical processes occur entirely in the solution phase, leaving single-particle/-molecule analysis of this critical area of science beyond the scope of available technology. Here, we report the first kinetics studies of freely diffusing and actively growing single polymer-particles at the single-particle level freely diffusing in solution. Active-feedback single-particle tracking was used to capture three-dimensional (3D) trajectories and real-time volumetric images of freely diffusing polymer particles (D ≈ 10-12 m2/s) and extract the growth rates of individual particles in the solution phase. The observed growth rates show that the average growth rate is a poor representation of the true underlying variability in polymer-particle growth behavior. These data revealed statistically significant populations of faster- and slower-growing particles at different depths in the sample, showing emergent heterogeneity while particles are still freely diffusing in solution. These results go against the prevailing premise that chemical processes in freely diffusing solution will exhibit uniform kinetics. We anticipate that these studies will launch new directions of solution-phase, nonensemble-averaged measurements of chemical processes.
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Affiliation(s)
- Donggeng Yu
- Department of Chemistry, Duke University; Durham, North Carolina 27708, United States
| | - Antonio Garcia
- Department of Chemistry, University of California, Irvine; Irvine, California 92697, United States
| | - Suzanne A Blum
- Department of Chemistry, University of California, Irvine; Irvine, California 92697, United States
| | - Kevin D Welsher
- Department of Chemistry, Duke University; Durham, North Carolina 27708, United States
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83
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Yadav S, Devi A, De AK. Enhanced optical force on multilayered dielectric nanoparticles by tuning material properties and nature of excitation: a theoretical investigation. NANOSCALE ADVANCES 2022; 4:2979-2987. [PMID: 36133514 PMCID: PMC9419164 DOI: 10.1039/d2na00280a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Accepted: 06/06/2022] [Indexed: 06/16/2023]
Abstract
Using dipole approximation, a comparative study of trapping force/potential on different types of dielectric nanoparticles is presented. The trapping force for multilayered nanoparticles, i.e. core-shell-shell type nanoparticles, is found to be enhanced compared with both core-only type and core-shell type nanoparticles. It is shown that an appropriate choice of material and thickness of the middle layer results in tuning the polarizability, thereby playing a vital role in determining the trapping efficiency for core-shell-shell type nanoparticles. Further, the effect of optical nonlinearity under femtosecond pulsed excitation is investigated and it is elucidated that depending on the specific need (i.e. high force versus long confinement time), the nature of excitation (i.e. pulsed excitation or continuous-wave excitation) can be judiciously chosen. These findings are promised to open up new prospects for controlled nanoscale trapping and manipulation across different fields of nanoscience and nanotechnology.
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Affiliation(s)
- Sumit Yadav
- Condensed Phase Dynamics Group, Department of Physical Sciences, Indian Institute of Science Education and Research (IISER) Mohali Knowledge City, Sector 81 SAS Nagar Punjab 140306 India
| | - Anita Devi
- Condensed Phase Dynamics Group, Department of Physical Sciences, Indian Institute of Science Education and Research (IISER) Mohali Knowledge City, Sector 81 SAS Nagar Punjab 140306 India
| | - Arijit K De
- Condensed Phase Dynamics Group, Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Mohali Knowledge City, Sector 81 SAS Nagar Punjab 140306 India
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84
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Shao M, Zhong MC, Wang Z, Ke Z, Zhong Z, Zhou J. Non-Invasive Dynamic Reperfusion of Microvessels In Vivo Controlled by Optical Tweezers. Front Bioeng Biotechnol 2022; 10:952537. [PMID: 35910027 PMCID: PMC9331193 DOI: 10.3389/fbioe.2022.952537] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 06/22/2022] [Indexed: 11/13/2022] Open
Abstract
Distributive shock is considered to be a condition of microvascular hypoperfusion, which can be fatal in severe cases. However, traditional therapeutic methods to restore the macro blood flow are difficult to accurately control the blood perfusion of microvessels, and the currently developed manipulation techniques are inevitably incompatible with biological systems. In our approach, infrared optical tweezers are used to dynamically control the microvascular reperfusion within subdermal capillaries in the pinna of mice. Furthermore, we estimate the effect of different optical trap positions on reperfusion at branch and investigate the effect of the laser power on reperfusion. The results demonstrate the ability of optical tweezers to control microvascular reperfusion. This strategy allows near-noninvasive reperfusion of the microvascular hypoperfusion in vivo. Hence, our work is expected to provide unprecedented insights into the treatment of distributive shock.
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Affiliation(s)
- Meng Shao
- Anhui Province Key Laboratory of Measuring Theory and Precision Instrument, School of Instrument Science and Optoelectronics Engineering, Hefei University of Technology, Hefei, China
| | - Min-Cheng Zhong
- Anhui Province Key Laboratory of Measuring Theory and Precision Instrument, School of Instrument Science and Optoelectronics Engineering, Hefei University of Technology, Hefei, China
- *Correspondence: Min-Cheng Zhong, ; Jinhua Zhou,
| | - Zixin Wang
- School of Biomedical Engineering, Anhui Medical University, Hefei, China
| | - Zeyu Ke
- School of Biomedical Engineering, Anhui Medical University, Hefei, China
| | - Zhensheng Zhong
- School of Biomedical Engineering, Anhui Medical University, Hefei, China
| | - Jinhua Zhou
- School of Biomedical Engineering, Anhui Medical University, Hefei, China
- *Correspondence: Min-Cheng Zhong, ; Jinhua Zhou,
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85
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Otic CJC, Yonemura S. Thermally Induced Knudsen Forces for Contactless Manipulation of a Micro-Object. MICROMACHINES 2022; 13:mi13071092. [PMID: 35888909 PMCID: PMC9323604 DOI: 10.3390/mi13071092] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Revised: 07/06/2022] [Accepted: 07/08/2022] [Indexed: 12/29/2022]
Abstract
In this paper, we propose that thermally induced Knudsen forces in a rarefied gas can be exploited to achieve a tweezer-like mechanism that can be used to trap and grasp a micro-object without physical contact. Using the direct simulation Monte Carlo (DSMC) method, we showed that the proposed mechanism is achieved when a heated thin plate, mounted perpendicularly on a flat substrate, is placed close to a colder object; in this case, a beam. This mechanism is mainly due to the pressure differences induced by the thermal edge flows at the corners of the beam and the thermal edge flow at the tip of the thin plate. Specifically, the pressure on the top surface of the beam is smaller than that on its bottom surface when the thin plate is above the beam, while the pressure on the right side of the beam is smaller than that on its left side when the thin plate is located near the right side of the beam. These differences in pressure generate a force, which attracts the beam to the plate horizontally and vertically. Furthermore, this phenomenon is enhanced when the height of the beam is shorter, such that the horizontal and vertical net forces, which attract the beam to the plate, become stronger. The mechanism proposed here was also found to depend significantly on the height of the beam, the temperature difference between the thin plate and the beam, and the Knudsen number.
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Affiliation(s)
- Clint John Cortes Otic
- Department of Finemechanics, Graduate School of Engineering, Tohoku University, 6-6 Aramaki Aza Aoba, Aoba-ku, Sendai 980-8579, Japan
- Correspondence: (C.J.C.O.); (S.Y.)
| | - Shigeru Yonemura
- Department of Mechanical Engineering, College of Engineering, Chubu University, 1200 Matsumoto-cho, Kasugai 487-8501, Japan
- Correspondence: (C.J.C.O.); (S.Y.)
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86
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Manca M, Zhang C, Scheffold F, Salentinig S. Optical tweezer platform for the characterization of pH-triggered colloidal transformations in the oleic acid/water system. J Colloid Interface Sci 2022; 627:610-620. [PMID: 35872418 DOI: 10.1016/j.jcis.2022.07.028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 06/30/2022] [Accepted: 07/04/2022] [Indexed: 10/17/2022]
Abstract
HYPOTHESIS Soft colloidal particles that respond to their environment have innovative potential for many fields ranging from food and health to biotechnology and oil recovery. The in situ characterisation of colloidal transformations that triggers the functional response remain a challenge. EXPERIMENTS This study demonstrates the combination of an optical micromanipulation platform, polarized optical video microscopy and microfluidics in a comprehensive approach for the analysis of pH-driven structural transformations in emulsions. The new platform, together with synchrotron small angle X-ray scattering, was then applied to research the food-relevant, pH-responsive, oleic acid in water system. FINDINGS The experiments demonstrate structural transformations in individual oleic acid particles from micron-sized onion-type multilamellar oleic acid vesicles at pH 8.6, to nanostructured emulsions at pH < 8.0, and eventually oil droplets at pH < 6.5. The smooth particle-water interface of the onion-type vesicles at pH 8.6 was transformed into a rough particle surface at pH below 7.5. The pH-triggered changes of the interfacial tension at the droplet-water interface together with mass transport owing to structural transformations induced a self-propelled motion of the particle. The results of this study contribute to the fundamental understanding of the structure-property relationship in pH-responsive emulsions for nutrient and drug delivery applications.
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Affiliation(s)
- Marco Manca
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, 1700 Fribourg, Switzerland
| | - Chi Zhang
- Department of Physics, University of Fribourg, Chemin du Musée 3, 1700 Fribourg, Switzerland
| | - Frank Scheffold
- Department of Physics, University of Fribourg, Chemin du Musée 3, 1700 Fribourg, Switzerland.
| | - Stefan Salentinig
- Department of Chemistry, University of Fribourg, Chemin du Musée 9, 1700 Fribourg, Switzerland.
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87
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Inferring potential landscapes from noisy trajectories of particles within an optical feedback trap. iScience 2022; 25:104731. [PMID: 36034218 PMCID: PMC9400092 DOI: 10.1016/j.isci.2022.104731] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 06/27/2022] [Accepted: 07/02/2022] [Indexed: 11/22/2022] Open
Abstract
While particle trajectories encode information on their governing potentials, potentials can be challenging to robustly extract from trajectories. Measurement errors may corrupt a particle’s position, and sparse sampling of the potential limits data in higher energy regions such as barriers. We develop a Bayesian method to infer potentials from trajectories corrupted by Markovian measurement noise without assuming prior functional form on the potentials. As an alternative to Gaussian process priors over potentials, we introduce structured kernel interpolation to the Natural Sciences which allows us to extend our analysis to large datasets. Structured-Kernel-Interpolation Priors for Potential Energy Reconstruction (SKIPPER) is validated on 1D and 2D experimental trajectories for particles in a feedback trap. A feedback trap was used to generate noisy Langevin microbead trajectories The potential energy surface is recovered using a Bayesian formulation The formulation uses a structured-kernel-interpolation Gaussian process (SKI-GP) to tractably approximate Gaussian process regression for larger datasets Thanks to our adaptation of SKI-GP, we have broadened the use of Gaussian processes for natural science applications
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88
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Abstract
Plasmonic and dielectric tweezers represent a common paradigm for an innovative and efficient optical trapping at the micro/nanoscale. Plasmonic configurations provide subwavelength mode confinement, resulting in very high optical forces, at the expense of a higher thermal effect, that could undermine the biological sample under test. On the contrary, dielectric configurations show limited optical forces values but overcome the thermal challenge. Achieving efficient optical trapping without affecting the sample temperature is still demanding. Here, we propose the design of a silicon (Si)-based dielectric nanobowtie dimer, made by two tip-to-tip triangle semiconductor elements. The combination of the conservation of the normal component of the electric displacement and the tangential component of the electric field, with a consequent large energy field confinement in the trapping site, ensures optical forces of about 27 fN with a power of 6 mW/µm2. The trapping of a virus with a diameter of 100 nm is demonstrated with numerical simulations, calculating a stability S = 1, and a stiffness k = 0.33 fN/nm, within a footprint of 0.96 µm2, preserving the temperature of the sample (temperature variation of 0.3 K).
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89
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Chen Z, Cai Z, Liu W, Yan Z. Optical trapping and manipulation for single-particle spectroscopy and microscopy. J Chem Phys 2022; 157:050901. [DOI: 10.1063/5.0086328] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Optical tweezers can control the position and orientation of individual colloidal particles in solution. Such control is often desirable but challenging for single-particle spectroscopy and microscopy, especially at the nanoscale. Functional nanoparticles that are optically trapped and manipulated in a three-dimensional (3D) space can serve as freestanding nanoprobes, which provide unique prospects of sensing and mapping the surrounding environment of the nanoparticles and studying their interactions with biological systems. In this perspective, we will first describe the optical forces underlying the optical trapping and manipulation of microscopic particles, then review the combinations and applications of different spectroscopy and microscopy techniques with optical tweezers. Finally, we will discuss the challenges of performing spectroscopy and microscopy on single nanoparticles with optical tweezers, the possible routes to address these challenges, and the new opportunities that will arise.
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Affiliation(s)
- Zhenzhen Chen
- The University of North Carolina at Chapel Hill, United States of America
| | - Zhewei Cai
- Clarkson University, United States of America
| | - Wenbo Liu
- The University of North Carolina at Chapel Hill, United States of America
| | - Zijie Yan
- University of North Carolina at Chapel Hill, United States of America
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90
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Nord AL, Biquet-Bisquert A, Abkarian M, Pigaglio T, Seduk F, Magalon A, Pedaci F. Dynamic stiffening of the flagellar hook. Nat Commun 2022; 13:2925. [PMID: 35614041 PMCID: PMC9133114 DOI: 10.1038/s41467-022-30295-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 04/22/2022] [Indexed: 11/09/2022] Open
Abstract
For many bacteria, motility stems from one or more flagella, each rotated by the bacterial flagellar motor, a powerful rotary molecular machine. The hook, a soft polymer at the base of each flagellum, acts as a universal joint, coupling rotation between the rigid membrane-spanning rotor and rigid flagellum. In multi-flagellated species, where thrust arises from a hydrodynamically coordinated flagellar bundle, hook flexibility is crucial, as flagella rotate significantly off-axis. However, consequently, the thrust applies a significant bending moment. Therefore, the hook must simultaneously be compliant to enable bundle formation yet rigid to withstand large hydrodynamical forces. Here, via high-resolution measurements and analysis of hook fluctuations under dynamical conditions, we elucidate how it fulfills this double functionality: the hook shows a dynamic increase in bending stiffness under increasing torsional stress. Such strain-stiffening allows the system to be flexible when needed yet reduce deformation under high loads, enabling high speed motility. Bacterial motility relies on the mechanics of the “hook” the 60 nm biopolymer at the base of rotating flagella. Here, authors observe the hook stiffening as it is twisted by the rotation of the flagellum, a mechanical feat evolved for its function.
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Affiliation(s)
- Ashley L Nord
- Centre de Biologie Structurale, Univ. Montpellier, CNRS, INSERM, Montpellier, France
| | - Anaïs Biquet-Bisquert
- Centre de Biologie Structurale, Univ. Montpellier, CNRS, INSERM, Montpellier, France
| | - Manouk Abkarian
- Centre de Biologie Structurale, Univ. Montpellier, CNRS, INSERM, Montpellier, France
| | - Théo Pigaglio
- Aix Marseille Université, CNRS, Laboratoire de Chimie Bactérienne (UMR7283), IMM, IM2B, 13402, Marseille, France
| | - Farida Seduk
- Aix Marseille Université, CNRS, Laboratoire de Chimie Bactérienne (UMR7283), IMM, IM2B, 13402, Marseille, France
| | - Axel Magalon
- Aix Marseille Université, CNRS, Laboratoire de Chimie Bactérienne (UMR7283), IMM, IM2B, 13402, Marseille, France
| | - Francesco Pedaci
- Centre de Biologie Structurale, Univ. Montpellier, CNRS, INSERM, Montpellier, France.
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91
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Multislice method based full-space analysis on mechanical interaction of electron vortex beam with a crystalline particle. Ultramicroscopy 2022; 238:113551. [DOI: 10.1016/j.ultramic.2022.113551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Revised: 04/22/2022] [Accepted: 05/04/2022] [Indexed: 11/20/2022]
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92
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Optofluidic Particle Manipulation Platform with Nanomembrane. MICROMACHINES 2022; 13:mi13050721. [PMID: 35630187 PMCID: PMC9142978 DOI: 10.3390/mi13050721] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Revised: 04/28/2022] [Accepted: 04/28/2022] [Indexed: 02/01/2023]
Abstract
We demonstrate a method for fabricating and utilizing an optofluidic particle manipulator on a silicon chip that features a 300 nm thick silicon dioxide membrane as part of a microfluidic channel. The fabrication method is based on etching silicon channels and converting the walls to silicon dioxide through thermal oxidation. Channels are encapsulated by a sacrificial polymer which fills the length of the fluid channel by way of spontaneous capillary action. The sacrificial material is then used as a mold for the formation of a nanoscale, solid-state, silicon dioxide membrane. The hollow channel is primarily used for fluid and particle transport but is capable of transmitting light over short distances and utilizes radiation pressure for particle trapping applications. The optofluidic platform features solid-core ridge waveguides which can direct light on and off of the silicon chip and intersect liquid channels. Optical loss values are characterized for liquid and solid-core structures and at interfaces. Estimates are provided for the optical power needed to trap particles of various sizes.
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93
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Montoya C, Alejandro E, Eom W, Grass D, Clarisse N, Witherspoon A, Geraci AA. Scanning force sensing at micrometer distances from a conductive surface with nanospheres in an optical lattice. APPLIED OPTICS 2022; 61:3486-3493. [PMID: 35471446 DOI: 10.1364/ao.457148] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 04/05/2022] [Indexed: 06/14/2023]
Abstract
The center-of-mass motion of optically trapped dielectric nanoparticles in a vacuum is extremely well decoupled from its environment, making a powerful tool for measurements of feeble subattonewton forces. We demonstrate a method to trap and maneuver nanoparticles in an optical standing wave potential formed by retroreflecting a laser beam from a metallic mirror surface. We can reliably position a ∼170nm diameter silica nanoparticle at distances of a few hundred nanometers to tens of micrometers from the surface of a gold-coated silicon mirror by transferring it from a single-beam tweezer trap into the standing wave potential. We can further measure forces experienced by the particle while scanning the two-dimensional space parallel to the mirror surface, and we find no significant excess force noise in the vicinity of the surface. This method may enable three-dimensional scanning force sensing near surfaces using optically trapped nanoparticles, promising for high-sensitivity scanning force microscopy, tests of the Casimir effect, and tests of the gravitational inverse square law at micrometer scales.
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94
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Blinder D, Birnbaum T, Schelkens P. Pincushion point-spread function for computer-generated holography. OPTICS LETTERS 2022; 47:2077-2080. [PMID: 35427341 DOI: 10.1364/ol.451403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 03/21/2022] [Indexed: 06/14/2023]
Abstract
Point-spread functions (PSFs) are non-stationary signals whose spatial frequency increases with the radius. These signals are only meaningful over a small spatial region when being propagated over short distances and sampled with regular sampling pitch. Otherwise, aliasing at steep incidence angles leads to the computation of spurious frequencies. This is generally addressed by evaluating the PSF in a bounded disk-shaped region, which has the added benefit that it reduces the required number of coefficient updates. This significantly accelerates numerical diffraction calculations in, e.g., wavefront recording planes for high-resolution holograms. However, the use of a disk-shaped PSF is too conservative since it only utilizes about 78.5% of the total bandwidth of the hologram. We therefore derive a novel, to the best of our knowledge, optimally shaped PSF fully utilizing the bandwidth formed by two bounding hyperbola. A number of numerical experiments with the newly proposed pincushion PSF were performed, reporting over three-fold reductions of the signal error and significant improvements to the visual quality of computer-generated holograms at high viewing angles.
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95
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Pradhan S, Whitby CP, Williams MAK, Chen JLY, Avci E. Interfacial colloidal assembly guided by optical tweezers and tuned via surface charge. J Colloid Interface Sci 2022; 621:101-109. [PMID: 35452924 DOI: 10.1016/j.jcis.2022.04.044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 04/05/2022] [Accepted: 04/07/2022] [Indexed: 10/18/2022]
Abstract
HYPOTHESIS The size, shape and dynamics of assemblies of colloidal particles optically-trapped at an air-water interface can be tuned by controlling the optical potential, particle concentration, surface charge density and wettability of the particles and the surface tension of the solution. EXPERIMENTS The assembly dynamics of different colloidal particle types (silica, polystyrene and carboxyl coated polystyrene particles) at an air-water interface in an optical potential were systematically explored allowing the effect of surface charge on assembly dynamics to be investigated. Additionally, the pH of the solutions were varied in order to modulate surface charge in a controllable fashion. The effect of surface tension on these assemblies was also explored by reducing the surface tension of the supporting solution by mixing ethanol with water. FINDINGS Silica, polystyrene and carboxyl coated polystyrene particles showed distinct assembly behaviours at the air-water interface that could be rationalised taking into account changes in surface charge (which in addition to being different between the particles could be modified systematically by changing the solution pH). Additionally, this is the first report showing that wettability of the colloidal particles and the surface tension of the solution are critical in determining the resulting assembly at the solution surface.
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Affiliation(s)
- Susav Pradhan
- School of Fundamental Sciences, Massey University, Palmerston North 4410, New Zealand; Department of Mechanical and Electrical Engineering, Massey University, Palmerston North 4410, New Zealand; The MacDiarmid Institute for Advanced Materials and Nanotechnology, Wellington 6140, New Zealand
| | - Catherine P Whitby
- School of Fundamental Sciences, Massey University, Palmerston North 4410, New Zealand; The MacDiarmid Institute for Advanced Materials and Nanotechnology, Wellington 6140, New Zealand.
| | - Martin A K Williams
- School of Fundamental Sciences, Massey University, Palmerston North 4410, New Zealand; The MacDiarmid Institute for Advanced Materials and Nanotechnology, Wellington 6140, New Zealand.
| | - Jack L Y Chen
- Centre for Biomedical and Chemical Sciences, Auckland University of Technology, Auckland 1010, New Zealand; Department of Biotechnology, Chemistry and Pharmaceutical Sciences, Universitá degli Studi di Siena, Siena 53100, Italy; The MacDiarmid Institute for Advanced Materials and Nanotechnology, Wellington 6140, New Zealand
| | - Ebubekir Avci
- Department of Mechanical and Electrical Engineering, Massey University, Palmerston North 4410, New Zealand; The MacDiarmid Institute for Advanced Materials and Nanotechnology, Wellington 6140, New Zealand.
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96
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Valagiannopoulos C. Nanotubes as sinks for quantum particles. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2022; 39:580-586. [PMID: 35471380 DOI: 10.1364/josaa.449520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Accepted: 02/08/2022] [Indexed: 06/14/2023]
Abstract
Nanotubes with proper thickness, size, and texture make ultra-efficient sinks for quantum particles traveling into specific background media. Several optimal semiconducting cylindrical layers are reported to achieve enhancement in the trapping of matter waves by two to three orders of magnitude. The identified shells can be used as pieces in quantum devices that involve the focusing of incident beams, spanning from charge pumps and superconducting capacitors to radiation pattern controllers and matter-wave lenses.
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97
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Viscoelastic Particle Focusing and Separation in a Spiral Channel. MICROMACHINES 2022; 13:mi13030361. [PMID: 35334653 PMCID: PMC8954746 DOI: 10.3390/mi13030361] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Revised: 02/18/2022] [Accepted: 02/22/2022] [Indexed: 02/06/2023]
Abstract
As one type of non-Newtonian fluid, viscoelastic fluids exhibit unique properties that contribute to particle lateral migration in confined microfluidic channels, leading to opportunities for particle manipulation and separation. In this paper, particle focusing in viscoelastic flow is studied in a wide range of polyethylene glycol (PEO) concentrations in aqueous solutions. Polystyrene beads with diameters from 3 to 20 μm are tested, and the variation of particle focusing position is explained by the coeffects of inertial flow, viscoelastic flow, and Dean flow. We showed that particle focusing position can be predicted by analyzing the force balance in the microchannel, and that particle separation resolution can be improved in viscoelastic flows.
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98
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McDonald C, Morrison VL, McGloin D, Fagerholm SC. Examining the Effect of Kindlin-3 Binding Site Mutation on LFA-1-ICAM-1 Bonds by Force Measuring Optical Tweezers. Front Immunol 2022; 12:792813. [PMID: 35154074 PMCID: PMC8826073 DOI: 10.3389/fimmu.2021.792813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 12/28/2021] [Indexed: 11/25/2022] Open
Abstract
Integrins in effector T cells are crucial for cell adhesion and play a central role in cell-mediated immunity. Leukocyte adhesion deficiency (LAD) type III, a genetic condition that can cause death in early childhood, highlights the importance of integrin/kindlin interactions for immune system function. A TTT/AAA mutation in the cytoplasmic domain of the β2 integrin significantly reduces kindlin-3 binding to the β2 tail, abolishes leukocyte adhesion to intercellular adhesion molecule 1 (ICAM-1), and decreases T cell trafficking in vivo. However, how kindlin-3 affects integrin function in T cells remains incompletely understood. We present an examination of LFA-1/ICAM-1 bonds in both wild-type effector T cells and those with a kindlin-3 binding site mutation. Adhesion assays show that effector T cells carrying the kindlin-3 binding site mutation display significantly reduced adhesion to the integrin ligand ICAM-1. Using optical trapping, combined with back focal plane interferometry, we measured a bond rupture force of 17.85 ±0.63 pN at a force loading rate of 30.21 ± 4.35 pN/s, for single integrins expressed on wild-type cells. Interestingly, a significant drop in rupture force of bonds was found for TTT/AAA-mutant cells, with a measured rupture force of 10.08 ± 0.88pN at the same pulling rate. Therefore, kindlin-3 binding to the cytoplasmic tail of the β2-tail directly affects catch bond formation and bond strength of integrin–ligand bonds. As a consequence of this reduced binding, CD8+ T cell activation in vitro is also significantly reduced.
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Affiliation(s)
- Craig McDonald
- SUPA, School of Science and Engineering, University of Dundee, Dundee, United Kingdom
| | - Vicky L Morrison
- School of Medicine, University of Dundee, Dundee, United Kingdom
| | - David McGloin
- SUPA, School of Science and Engineering, University of Dundee, Dundee, United Kingdom.,School of Electrical and Data Engineering, University of Technology Sydney, Sydney, NSW, Australia
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99
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Falleroni F, Bocchero U, Mortal S, Li Y, Ye Z, Cojoc D, Torre V. Mechanotransduction in hippocampal neurons operates under localized low picoNewton forces. iScience 2022; 25:103807. [PMID: 35198872 PMCID: PMC8851107 DOI: 10.1016/j.isci.2022.103807] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2021] [Revised: 09/21/2021] [Accepted: 01/20/2022] [Indexed: 11/26/2022] Open
Abstract
There is growing evidence suggesting that mechanical properties of CNS neurons may play an important regulatory role in cellular processes. Here, we employ an oscillatory optical tweezers (OOT) to exert a local indentation with forces in the range of 5–50 pN. We found that single local indentation above a threshold of 13 ± 1 pN evokes a transient intracellular calcium change, whereas repeated mechanical stimulations induce a more sustained and variable calcium response. Importantly, neurons were able to differentiate the magnitude of mechanical stimuli. Chemical perturbation and whole-cell patch clamp recordings suggest that mechanically evoked response requires the influx of extracellular calcium through transmembrane ion channels. Moreover, we observed a mechanically evoked activation of the CAMKII and small G protein RhoA. These results all together suggest that mechanical signaling among developed neurons fully operates in neuronal networks under physiological conditions. Hippocampal neurons are mechanically adapted to forces in the picoNewton range Localized compressive mechanical stimuli in the range of 13–50 pN lead to Ca2+ influx The evoked Ca2+ neuronal response is differentiated by the magnitude of the force The subsequent mechanotransduction pathway involves the activation of CAMKII and RhoA
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Affiliation(s)
- Fabio Falleroni
- Technische Universitat Munchen Fakultat fur Physik (TUM), 85748 Garching, Germany.,Neuroscience Area, International School for Advanced Studies (SISSA), 34136 Trieste, Italy
| | - Ulisse Bocchero
- National Eye Institute (NEI), Bethesda, MD 20892, USA.,Neuroscience Area, International School for Advanced Studies (SISSA), 34136 Trieste, Italy
| | - Simone Mortal
- Neuroscience Area, International School for Advanced Studies (SISSA), 34136 Trieste, Italy
| | - Yunzhen Li
- Neuroscience Area, International School for Advanced Studies (SISSA), 34136 Trieste, Italy
| | - Zhongjie Ye
- Neuroscience Area, International School for Advanced Studies (SISSA), 34136 Trieste, Italy
| | - Dan Cojoc
- Institute of Materials (IOM-CNR), Area Science Park, Basovizza, 34149 Trieste, Italy
| | - Vincent Torre
- Neuroscience Area, International School for Advanced Studies (SISSA), 34136 Trieste, Italy.,Institute of Materials (IOM-CNR), Area Science Park, Basovizza, 34149 Trieste, Italy
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100
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Rahimi M, Sohrabi S, Murphy CT. Novel elasticity measurements reveal C. elegans cuticle stiffens with age and in a long-lived mutant. Biophys J 2022; 121:515-524. [PMID: 35065051 PMCID: PMC8874029 DOI: 10.1016/j.bpj.2022.01.013] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Revised: 01/09/2022] [Accepted: 01/18/2022] [Indexed: 11/27/2022] Open
Abstract
Changes in biomechanical properties have profound impacts on human health. C. elegans might serve as a model for studying the molecular genetics of mammalian tissue decline. Previously, we found that collagens are required for insulin signaling mutants' long lifespan and that overexpression of specific collagens extends wild-type lifespan. However, whether these effects on lifespan are due to mechanical changes during aging has not yet been established. Here, we have developed two novel methods to study the cuticle: we measure mechanical properties of live animals using osmotic shock, and we directly perform the tensile test on isolated cuticles using microfluidic technology. Using these tools, we find that the cuticle, not the muscle, is responsible for changes in the "stretchiness" of C. elegans, and that cuticle stiffness is highly nonlinear and anisotropic. We also found that collagen mutations alter the integrity of the cuticle by significantly changing the elasticity. In addition, aging stiffens the cuticle under mechanical loads beyond the cuticle's healthy stretched state. Measurements of elasticity showed that long-lived daf-2 mutants were considerably better at preventing progressive mechanical changes with age. These tests of C. elegans biophysical properties suggest that the cuticle is responsible for their resilience.
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Affiliation(s)
- Mohammad Rahimi
- Department of Molecular Biology & Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey
| | - Salman Sohrabi
- Department of Molecular Biology & Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey
| | - Coleen T Murphy
- Department of Molecular Biology & Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey.
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