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Rinaldi R, Jastrzebski R, Clough MT, Ralph J, Kennema M, Bruijnincx PCA, Weckhuysen BM. Paving the Way for Lignin Valorisation: Recent Advances in Bioengineering, Biorefining and Catalysis. Angew Chem Int Ed Engl 2016; 55:8164-215. [PMID: 27311348 PMCID: PMC6680216 DOI: 10.1002/anie.201510351] [Citation(s) in RCA: 776] [Impact Index Per Article: 97.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2015] [Revised: 01/28/2016] [Indexed: 12/23/2022]
Abstract
Lignin is an abundant biopolymer with a high carbon content and high aromaticity. Despite its potential as a raw material for the fuel and chemical industries, lignin remains the most poorly utilised of the lignocellulosic biopolymers. Effective valorisation of lignin requires careful fine-tuning of multiple "upstream" (i.e., lignin bioengineering, lignin isolation and "early-stage catalytic conversion of lignin") and "downstream" (i.e., lignin depolymerisation and upgrading) process stages, demanding input and understanding from a broad array of scientific disciplines. This review provides a "beginning-to-end" analysis of the recent advances reported in lignin valorisation. Particular emphasis is placed on the improved understanding of lignin's biosynthesis and structure, differences in structure and chemical bonding between native and technical lignins, emerging catalytic valorisation strategies, and the relationships between lignin structure and catalyst performance.
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Affiliation(s)
- Roberto Rinaldi
- Department of Chemical Engineering, Imperial College London, South Kensington Campus, London, SW7 2AZ, UK.
| | - Robin Jastrzebski
- Inorganic Chemistry and Catalysis, Debye Institute for Nanomaterials Science, Utrecht University, Universiteitsweg 99, 3584, CG, Utrecht, The Netherlands
| | - Matthew T Clough
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470, Mülheim an der Ruhr, Germany
| | - John Ralph
- Department of Energy's Great Lakes Bioenergy Research Center, the Wisconsin Energy Institute, and Department of Biochemistry, University of Wisconsin, Madison, WI, 53726, USA.
| | - Marco Kennema
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470, Mülheim an der Ruhr, Germany
| | - Pieter C A Bruijnincx
- Inorganic Chemistry and Catalysis, Debye Institute for Nanomaterials Science, Utrecht University, Universiteitsweg 99, 3584, CG, Utrecht, The Netherlands.
| | - Bert M Weckhuysen
- Inorganic Chemistry and Catalysis, Debye Institute for Nanomaterials Science, Utrecht University, Universiteitsweg 99, 3584, CG, Utrecht, The Netherlands.
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52
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Enhancing digestibility and ethanol yield of Populus wood via expression of an engineered monolignol 4-O-methyltransferase. Nat Commun 2016; 7:11989. [PMID: 27349324 PMCID: PMC4931242 DOI: 10.1038/ncomms11989] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2015] [Accepted: 05/18/2016] [Indexed: 11/16/2022] Open
Abstract
Producing cellulosic biofuels and bio-based chemicals from woody biomass is impeded by the presence of lignin polymer in the plant cell wall. Manipulating the monolignol biosynthetic pathway offers a promising approach to improved processability, but often impairs plant growth and development. Here, we show that expressing an engineered 4-O-methyltransferase that chemically modifies the phenolic moiety of lignin monomeric precursors, thus preventing their incorporation into the lignin polymer, substantially alters hybrid aspens' lignin content and structure. Woody biomass derived from the transgenic aspens shows a 62% increase in the release of simple sugars and up to a 49% increase in the yield of ethanol when the woody biomass is subjected to enzymatic digestion and yeast-mediated fermentation. Moreover, the cell wall structural changes do not affect growth and biomass production of the trees. Our study provides a useful strategy for tailoring woody biomass for bio-based applications. The efficiency of cellulosic biofuel production from woody biomass is limited by the presence of lignin that impedes efficient processing. Here the authors show that transgenic modification of aspen to depress lignin polymerization can increase ethanol yield without affecting tree growth.
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Rinaldi R, Jastrzebski R, Clough MT, Ralph J, Kennema M, Bruijnincx PCA, Weckhuysen BM. Wege zur Verwertung von Lignin: Fortschritte in der Biotechnik, der Bioraffination und der Katalyse. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201510351] [Citation(s) in RCA: 141] [Impact Index Per Article: 17.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Roberto Rinaldi
- Department of Chemical Engineering Imperial College London South Kensington Campus London SW7 2AZ Großbritannien
| | - Robin Jastrzebski
- Inorganic Chemistry and Catalysis, Debye Institute for Nanomaterials Science Utrecht University Universiteitsweg 99 3584 CG Utrecht Niederlande
| | - Matthew T. Clough
- Max-Planck-Institut für Kohlenforschung Kaiser-Wilhelm-Platz 1 45470 Mülheim an der Ruhr Deutschland
| | - John Ralph
- Department of Energy's Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, and Department of Biochemistry University of Wisconsin Madison WI 53726 USA
| | - Marco Kennema
- Max-Planck-Institut für Kohlenforschung Kaiser-Wilhelm-Platz 1 45470 Mülheim an der Ruhr Deutschland
| | - Pieter C. A. Bruijnincx
- Inorganic Chemistry and Catalysis, Debye Institute for Nanomaterials Science Utrecht University Universiteitsweg 99 3584 CG Utrecht Niederlande
| | - Bert M. Weckhuysen
- Inorganic Chemistry and Catalysis, Debye Institute for Nanomaterials Science Utrecht University Universiteitsweg 99 3584 CG Utrecht Niederlande
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Mottiar Y, Vanholme R, Boerjan W, Ralph J, Mansfield SD. Designer lignins: harnessing the plasticity of lignification. Curr Opin Biotechnol 2016; 37:190-200. [DOI: 10.1016/j.copbio.2015.10.009] [Citation(s) in RCA: 214] [Impact Index Per Article: 26.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2015] [Revised: 10/14/2015] [Accepted: 10/26/2015] [Indexed: 12/20/2022]
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Strauss SH, Ma C, Ault K, Klocko AL. Lessons from Two Decades of Field Trials with Genetically Modified Trees in the USA: Biology and Regulatory Compliance. BIOSAFETY OF FOREST TRANSGENIC TREES 2016. [DOI: 10.1007/978-94-017-7531-1_5] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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56
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Eudes A, Sathitsuksanoh N, Baidoo EEK, George A, Liang Y, Yang F, Singh S, Keasling JD, Simmons BA, Loqué D. Expression of a bacterial 3-dehydroshikimate dehydratase reduces lignin content and improves biomass saccharification efficiency. PLANT BIOTECHNOLOGY JOURNAL 2015; 13:1241-50. [PMID: 25583257 PMCID: PMC6680230 DOI: 10.1111/pbi.12310] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2014] [Revised: 11/03/2014] [Accepted: 11/04/2014] [Indexed: 05/18/2023]
Abstract
Lignin confers recalcitrance to plant biomass used as feedstocks in agro-processing industries or as source of renewable sugars for the production of bioproducts. The metabolic steps for the synthesis of lignin building blocks belong to the shikimate and phenylpropanoid pathways. Genetic engineering efforts to reduce lignin content typically employ gene knockout or gene silencing techniques to constitutively repress one of these metabolic pathways. Recently, new strategies have emerged offering better spatiotemporal control of lignin deposition, including the expression of enzymes that interfere with the normal process for cell wall lignification. In this study, we report that expression of a 3-dehydroshikimate dehydratase (QsuB from Corynebacterium glutamicum) reduces lignin deposition in Arabidopsis cell walls. QsuB was targeted to the plastids to convert 3-dehydroshikimate - an intermediate of the shikimate pathway - into protocatechuate. Compared to wild-type plants, lines expressing QsuB contain higher amounts of protocatechuate, p-coumarate, p-coumaraldehyde and p-coumaryl alcohol, and lower amounts of coniferaldehyde, coniferyl alcohol, sinapaldehyde and sinapyl alcohol. 2D-NMR spectroscopy and pyrolysis-gas chromatography/mass spectrometry (pyro-GC/MS) reveal an increase of p-hydroxyphenyl units and a reduction of guaiacyl units in the lignin of QsuB lines. Size-exclusion chromatography indicates a lower degree of lignin polymerization in the transgenic lines. Therefore, our data show that the expression of QsuB primarily affects the lignin biosynthetic pathway. Finally, biomass from these lines exhibits more than a twofold improvement in saccharification efficiency. We conclude that the expression of QsuB in plants, in combination with specific promoters, is a promising gain-of-function strategy for spatiotemporal reduction of lignin in plant biomass.
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Affiliation(s)
- Aymerick Eudes
- Joint BioEnergy Institute, Emeryville, CA, USA
- Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Noppadon Sathitsuksanoh
- Joint BioEnergy Institute, Emeryville, CA, USA
- Sandia National Laboratory, Livermore, CA, USA
| | - Edward E K Baidoo
- Joint BioEnergy Institute, Emeryville, CA, USA
- Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Anthe George
- Joint BioEnergy Institute, Emeryville, CA, USA
- Sandia National Laboratory, Livermore, CA, USA
| | - Yan Liang
- Joint BioEnergy Institute, Emeryville, CA, USA
- Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Fan Yang
- Joint BioEnergy Institute, Emeryville, CA, USA
- Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Seema Singh
- Joint BioEnergy Institute, Emeryville, CA, USA
- Sandia National Laboratory, Livermore, CA, USA
| | - Jay D Keasling
- Joint BioEnergy Institute, Emeryville, CA, USA
- Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Department of Bioengineering, Department of Chemical & Biomolecular Engineering, University of California, Berkeley, CA, USA
| | - Blake A Simmons
- Joint BioEnergy Institute, Emeryville, CA, USA
- Sandia National Laboratory, Livermore, CA, USA
| | - Dominique Loqué
- Joint BioEnergy Institute, Emeryville, CA, USA
- Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
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Allahverdiyeva Y, Battchikova N, Brosché M, Fujii H, Kangasjärvi S, Mulo P, Mähönen AP, Nieminen K, Overmyer K, Salojärvi J, Wrzaczek M. Integration of photosynthesis, development and stress as an opportunity for plant biology. THE NEW PHYTOLOGIST 2015; 208:647-55. [PMID: 26174112 DOI: 10.1111/nph.13549] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
With the tremendous progress of the past decades, molecular plant science is becoming more unified than ever. We now have the exciting opportunity to further connect subdisciplines and understand plants as whole organisms, as will be required to efficiently utilize them in natural and agricultural systems to meet human needs. The subfields of photosynthesis, plant developmental biology and plant stress are used as examples to discuss how plant science can become better integrated. The challenges, strategies and rich opportunities for the integration of the plant sciences are discussed. In recent years, more and more overlap between various subdisciplines has been inadvertently discovered including tradeoffs that may occur in plants engineered for biotechnological applications. Already important, bioinformatics and computational modelling will become even more central to structuring and understanding the ever growing amounts of data. The process of integrating and overlapping fields in plant biology research is advancing, but plant science will benefit from dedicating more effort and urgency to reach across its boundaries.
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Affiliation(s)
- Yagut Allahverdiyeva
- Department of Biochemistry, Molecular Plant Biology, University of Turku, FI-20014, Turku, Finland
| | - Natalia Battchikova
- Department of Biochemistry, Molecular Plant Biology, University of Turku, FI-20014, Turku, Finland
| | - Mikael Brosché
- Department of Biosciences, Plant Biology, and Viikki Plant Science Centre (ViPS), University of Helsinki, FI-00014, Helsinki, Finland
- Institute of Technology, University of Tartu, EE-50411, Tartu, Estonia
| | - Hiroaki Fujii
- Department of Biochemistry, Molecular Plant Biology, University of Turku, FI-20014, Turku, Finland
| | - Saijaliisa Kangasjärvi
- Department of Biochemistry, Molecular Plant Biology, University of Turku, FI-20014, Turku, Finland
| | - Paula Mulo
- Department of Biochemistry, Molecular Plant Biology, University of Turku, FI-20014, Turku, Finland
| | - Ari Pekka Mähönen
- Department of Biosciences, Plant Biology, and Viikki Plant Science Centre (ViPS), University of Helsinki, FI-00014, Helsinki, Finland
- Institute of Biotechnology, University of Helsinki, FI-00014, Helsinki, Finland
| | - Kaisa Nieminen
- Department of Biosciences, Plant Biology, and Viikki Plant Science Centre (ViPS), University of Helsinki, FI-00014, Helsinki, Finland
- Institute of Biotechnology, University of Helsinki, FI-00014, Helsinki, Finland
- Natural Resources Institute Finland (Luke), Green Technology, FI-01301, Vantaa, Finland
| | - Kirk Overmyer
- Department of Biosciences, Plant Biology, and Viikki Plant Science Centre (ViPS), University of Helsinki, FI-00014, Helsinki, Finland
| | - Jarkko Salojärvi
- Department of Biosciences, Plant Biology, and Viikki Plant Science Centre (ViPS), University of Helsinki, FI-00014, Helsinki, Finland
| | - Michael Wrzaczek
- Department of Biosciences, Plant Biology, and Viikki Plant Science Centre (ViPS), University of Helsinki, FI-00014, Helsinki, Finland
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58
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Zwieniecki MA, Secchi F. Threats to xylem hydraulic function of trees under 'new climate normal' conditions. PLANT, CELL & ENVIRONMENT 2015; 38:1713-24. [PMID: 25039674 DOI: 10.1111/pce.12412] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2014] [Revised: 07/02/2014] [Accepted: 07/06/2014] [Indexed: 05/23/2023]
Abstract
Climate models predict increases in frequency and intensity of extreme environmental conditions, such as changes to minimum and maximum temperatures, duration of drought periods, intensity of rainfall/snowfall events and wind strength. These local extremes, rather than average climatic conditions, are closely linked to woody plant survival, as trees cope with such events over long lifespans. While the xylem provides trees with structural strength and is considered the most robust part of a tree's structure, it is also the most physiologically vulnerable as tree survival depends on its ability to sustain water supply to the tree crown under variable environmental conditions. Many structural, functional and biological tree properties evolved to protect xylem from loss of transport function because of embolism or to restore xylem transport capacity following embolism formation. How 'the new climate normal' conditions will affect these evolved strategies is yet to be seen. Our understanding of xylem physiology and current conceptual models describing embolism formation and plant recovery from water stress, however, can provide insight into near-future challenges that woody plants will face. In addition, knowledge of species-specific properties of xylem function may help guide mitigation of climate change impacts on woody plants in natural and agricultural tree communities.
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Affiliation(s)
- Maciej A Zwieniecki
- Department of Plant Sciences, University of California - Davis, Davis, CA, 95616, USA
| | - Francesca Secchi
- Department of Plant Sciences, University of California - Davis, Davis, CA, 95616, USA
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59
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Tsuji Y, Vanholme R, Tobimatsu Y, Ishikawa Y, Foster CE, Kamimura N, Hishiyama S, Hashimoto S, Shino A, Hara H, Sato-Izawa K, Oyarce P, Goeminne G, Morreel K, Kikuchi J, Takano T, Fukuda M, Katayama Y, Boerjan W, Ralph J, Masai E, Kajita S. Introduction of chemically labile substructures into Arabidopsis lignin through the use of LigD, the Cα-dehydrogenase from Sphingobium sp. strain SYK-6. PLANT BIOTECHNOLOGY JOURNAL 2015; 13:821-32. [PMID: 25580543 DOI: 10.1111/pbi.12316] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2014] [Revised: 11/07/2014] [Accepted: 11/25/2014] [Indexed: 05/19/2023]
Abstract
Bacteria-derived enzymes that can modify specific lignin substructures are potential targets to engineer plants for better biomass processability. The Gram-negative bacterium Sphingobium sp. SYK-6 possesses a Cα-dehydrogenase (LigD) enzyme that has been shown to oxidize the α-hydroxy functionalities in β-O-4-linked dimers into α-keto analogues that are more chemically labile. Here, we show that recombinant LigD can oxidize an even wider range of β-O-4-linked dimers and oligomers, including the genuine dilignols, guaiacylglycerol-β-coniferyl alcohol ether and syringylglycerol-β-sinapyl alcohol ether. We explored the possibility of using LigD for biosynthetically engineering lignin by expressing the codon-optimized ligD gene in Arabidopsis thaliana. The ligD cDNA, with or without a signal peptide for apoplast targeting, has been successfully expressed, and LigD activity could be detected in the extracts of the transgenic plants. UPLC-MS/MS-based metabolite profiling indicated that levels of oxidized guaiacyl (G) β-O-4-coupled dilignols and analogues were significantly elevated in the LigD transgenic plants regardless of the signal peptide attachment to LigD. In parallel, 2D NMR analysis revealed a 2.1- to 2.8-fold increased level of G-type α-keto-β-O-4 linkages in cellulolytic enzyme lignins isolated from the stem cell walls of the LigD transgenic plants, indicating that the transformation was capable of altering lignin structure in the desired manner.
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Affiliation(s)
- Yukiko Tsuji
- Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan
| | - Ruben Vanholme
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Department of Plant Systems Biology, VIB, Ghent, Belgium
| | - Yuki Tobimatsu
- Department of Biochemistry, University of Wisconsin, Madison, WI, USA
- US Department of Energy, Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Madison, WI, USA
| | - Yasuyuki Ishikawa
- Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan
| | - Clifton E Foster
- US Department of Energy, Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Madison, WI, USA
- Michigan State University, East Lansing, MI, USA
| | - Naofumi Kamimura
- Department of Bioengineering, Nagaoka University of Technology, Niigata, Japan
| | | | - Saki Hashimoto
- Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan
| | - Amiu Shino
- Center for Sustainable Resource Science, RIKEN, Kanagawa, Japan
| | - Hirofumi Hara
- Malaysia-Japan International Institute of Technology, Universiti Teknologi Malaysia, Kuala Lumpur, Malaysia
| | - Kanna Sato-Izawa
- Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan
| | - Paula Oyarce
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Department of Plant Systems Biology, VIB, Ghent, Belgium
| | - Geert Goeminne
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Department of Plant Systems Biology, VIB, Ghent, Belgium
| | - Kris Morreel
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Department of Plant Systems Biology, VIB, Ghent, Belgium
| | - Jun Kikuchi
- Center for Sustainable Resource Science, RIKEN, Kanagawa, Japan
| | | | - Masao Fukuda
- Department of Bioengineering, Nagaoka University of Technology, Niigata, Japan
| | | | - Wout Boerjan
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium
- Department of Plant Systems Biology, VIB, Ghent, Belgium
| | - John Ralph
- Department of Biochemistry, University of Wisconsin, Madison, WI, USA
- US Department of Energy, Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, Madison, WI, USA
| | - Eiji Masai
- Department of Bioengineering, Nagaoka University of Technology, Niigata, Japan
| | - Shinya Kajita
- Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan
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60
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Fichot R, Brignolas F, Cochard H, Ceulemans R. Vulnerability to drought-induced cavitation in poplars: synthesis and future opportunities. PLANT, CELL & ENVIRONMENT 2015; 38:1233-51. [PMID: 25444560 DOI: 10.1111/pce.12491] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2014] [Accepted: 11/12/2014] [Indexed: 05/04/2023]
Abstract
Vulnerability to drought-induced cavitation is a key trait of plant water relations. Here, we summarize the available literature on vulnerability to drought-induced cavitation in poplars (Populus spp.), a genus of agronomic, ecological and scientific importance. Vulnerability curves and vulnerability parameters (including the water potential inducing 50% loss in hydraulic conductivity, P50) were collected from 37 studies published between 1991 and 2014, covering a range of 10 species and 12 interspecific hybrid crosses. Results of our meta-analysis confirm that poplars are among the most vulnerable woody species to drought-induced cavitation (mean P50 = -1.44 and -1.55 MPa across pure species and hybrids, respectively). Yet, significant variation occurs among species (P50 range: 1.43 MPa) and among hybrid crosses (P50 range: 1.12 MPa), within species and hybrid crosses (max. P50 range reported: 0.8 MPa) as well as in response to environmental factors including nitrogen fertilization, irradiance, temperature and drought (max. P50 range reported: 0.75 MPa). Potential implications and gaps in knowledge are discussed in the context of poplar cultivation, species adaptation and climate modifications. We suggest that poplars represent a valuable model for studies on drought-induced cavitation, especially to elucidate the genetic and molecular basis of cavitation resistance in Angiosperms.
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Affiliation(s)
- Régis Fichot
- INRA, LBLGC, EA 1207, University of Orléans, Orléans, F-45067, France
| | - Franck Brignolas
- INRA, LBLGC, EA 1207, University of Orléans, Orléans, F-45067, France
| | - Hervé Cochard
- UMR547 PIAF, INRA, Clermont-Ferrand, F-63100, France
- UMR547 PIAF, Clermont Université, Université Blaise-Pascal, Clermont-Ferrand, F-63000, France
| | - Reinhart Ceulemans
- Department of Biology, Centre of Excellence, Plant and Vegetation Ecology (PLECO), University of Antwerp, Wilrijk, B-2610, Belgium
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61
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dos Santos AB, Bottcher A, Kiyota E, Mayer JLS, Vicentini R, Brito MDS, Creste S, Landell MGA, Mazzafera P. Water stress alters lignin content and related gene expression in two sugarcane genotypes. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2015; 63:4708-4720. [PMID: 25936563 DOI: 10.1021/jf5061858] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The lignin deposition in the stem of two sugarcane genotypes was assessed on exposure to water stress. The lignin content and the morphoanatomical characterization of the stem indicated that IACSP94-2094 plants are more lignified than those of IACSP95-5000 genotype, under normal water supply conditions, which was especially associated with higher lignin contents in the rind of mature internodes. Water deficit had negative impact on the biomass production, mostly with IACSP94-2094 plants, possibly due to stress severity or higher susceptibility of that genotype during the stem-lengthening phase. Water deficit led to significant alterations in the expression levels of lignin biosynthesis genes and led to an approximate 60% increase of lignin content in the rind of young internodes in both genotypes. It is concluded that the young rind region was more directly affected by water stress and, depending on the genotype, a higher lignin accumulation may occur in the stem, thus implying lower quality biomass for bioethanol production.
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Affiliation(s)
- Adriana Brombini dos Santos
- †Departamento de Biologia Vegetal, Instituto de Biologia, CP 6109, Universidade Estadual de Campinas, CEP 13083-970 Campinas, SP, Brazil
- ‡Embrapa Soja, Rodovia Carlos João Strass, s/n°, Acesso Orlando Amaral, Distrito de Warta, CP 231, CEP 86001-970 Londrina, PR, Brazil
| | - Alexandra Bottcher
- †Departamento de Biologia Vegetal, Instituto de Biologia, CP 6109, Universidade Estadual de Campinas, CEP 13083-970 Campinas, SP, Brazil
- §Centro de Tecnologia Canavieira (CTC), Rua Santo Antônio, Centro, CEP 13400-160 Piracicaba, SP, Brazil
| | - Eduardo Kiyota
- †Departamento de Biologia Vegetal, Instituto de Biologia, CP 6109, Universidade Estadual de Campinas, CEP 13083-970 Campinas, SP, Brazil
| | - Juliana Lischka Sampaio Mayer
- †Departamento de Biologia Vegetal, Instituto de Biologia, CP 6109, Universidade Estadual de Campinas, CEP 13083-970 Campinas, SP, Brazil
| | - Renato Vicentini
- ∥Centro de Biologia Molecular e Engenharia Genética, Universidade Estadual de Campinas, CEP 13083-875 Campinas, SP, Brazil
| | - Michael dos Santos Brito
- †Departamento de Biologia Vegetal, Instituto de Biologia, CP 6109, Universidade Estadual de Campinas, CEP 13083-970 Campinas, SP, Brazil
- ⊥Centro de Cana, Instituto Agronômico de Campinas, CEP 14001-970 Ribeirão Preto, SP, Brazil
| | - Silvana Creste
- ⊥Centro de Cana, Instituto Agronômico de Campinas, CEP 14001-970 Ribeirão Preto, SP, Brazil
| | - Marcos G A Landell
- ⊥Centro de Cana, Instituto Agronômico de Campinas, CEP 14001-970 Ribeirão Preto, SP, Brazil
| | - Paulo Mazzafera
- †Departamento de Biologia Vegetal, Instituto de Biologia, CP 6109, Universidade Estadual de Campinas, CEP 13083-970 Campinas, SP, Brazil
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62
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Jupa R, Didi V, Hejátko J, Gloser V. An improved method for the visualization of conductive vessels in Arabidopsis thaliana inflorescence stems. FRONTIERS IN PLANT SCIENCE 2015; 6:211. [PMID: 25914701 PMCID: PMC4391271 DOI: 10.3389/fpls.2015.00211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/19/2014] [Accepted: 03/16/2015] [Indexed: 06/04/2023]
Abstract
Dye perfusion is commonly used for the identification of conductive elements important for the study of xylem development as well as precise hydraulic estimations. The tiny size of inflorescence stems, the small amount of vessels in close arrangement, and high hydraulic resistivity delimit the use of the method for quantification of the water conductivity of Arabidopsis thaliana, one of the recently most extensively used plant models. Here, we present an extensive adjustment to the method in order to reliably identify individual functional (conductive) vessels. Segments of inflorescence stems were sealed in silicone tubes to prevent damage and perfused with a dye solution. Our results showed that dyes often used for staining functional xylem elements (safranin, fuchsine, toluidine blue) failed with Arabidopsis. In contrast, Fluorescent Brightener 28 dye solution perfused through segments stained secondary cell walls of functional vessels, which were clearly distinguishable in native cross sections. When compared to identification based on the degree of development of secondary cell walls, identification with the help of dye perfusion revealed a significantly lower number of functional vessels and values of theoretical hydraulic conductivity. We found that lignified but not yet functional vessels form a substantial portion of the xylem in apical and basal segments of Arabidopsis and, thus, significantly affect the analyzed functional parameters of xylem. The presented methodology enables reliable identification of individual functional vessels, allowing thus estimations of hydraulic conductivities to be improved, size distributions and vessel diameters to be refined, and data variability generally to be reduced.
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Affiliation(s)
- Radek Jupa
- Department of Experimental Biology, Faculty of Science, Masaryk UniversityBrno, Czech Republic
| | - Vojtěch Didi
- Functional Genomics and Proteomics of Plants, Central European Institute of Technology, Masaryk UniversityBrno, Czech Republic
| | - Jan Hejátko
- Functional Genomics and Proteomics of Plants, Central European Institute of Technology, Masaryk UniversityBrno, Czech Republic
| | - Vít Gloser
- Department of Experimental Biology, Faculty of Science, Masaryk UniversityBrno, Czech Republic
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63
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Porth I, El-Kassaby YA. Using Populus as a lignocellulosic feedstock for bioethanol. Biotechnol J 2015; 10:510-24. [PMID: 25676392 DOI: 10.1002/biot.201400194] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Revised: 11/11/2014] [Accepted: 12/30/2014] [Indexed: 11/10/2022]
Abstract
Populus species along with species from the sister genus Salix will provide valuable feedstock resources for advanced second-generation biofuels. Their inherent fast growth characteristics can particularly be exploited for short rotation management, a time and energy saving cultivation alternative for lignocellulosic feedstock supply. Salicaceae possess inherent cell wall characteristics with favorable cellulose to lignin ratios for utilization as bioethanol crop. We review economically important traits relevant for intensively managed biofuel crop plantations, genomic and phenotypic resources available for Populus, breeding strategies for forest trees dedicated to bioenergy provision, and bioprocesses and downstream applications related to opportunities using Salicaceae as a renewable resource. Challenges need to be resolved for every single step of the conversion process chain, i.e., starting from tree domestication for improved performance as a bioenergy crop, bioconversion process, policy development for land use changes associated with advanced biofuels, and harvest and supply logistics associated with industrial-scale biorefinery plants using Populus as feedstock. Significant hurdles towards cost and energy efficiency, environmental friendliness, and yield maximization with regards to biomass pretreatment, saccharification, and fermentation of celluloses and the sustainability of biorefineries as a whole still need to be overcome.
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Affiliation(s)
- Ilga Porth
- Forest and Conservation Sciences, University of British Columbia, Vancouver, Canada.
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64
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Ménard D, Pesquet E. Cellular interactions during tracheary elements formation and function. CURRENT OPINION IN PLANT BIOLOGY 2015; 23:109-15. [PMID: 25545993 DOI: 10.1016/j.pbi.2014.12.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2014] [Revised: 11/17/2014] [Accepted: 12/11/2014] [Indexed: 05/08/2023]
Abstract
The survival of higher plant species on land depends on the development and function of an efficient vascular system distributing water and minerals absorbed by roots to all aerial organs. This conduction and distribution of plant sap relies on specialized cells named tracheary elements (TEs). In contrast to many other cell types in plants, TEs are functionalized by cell death that hollows the cell protoplast to make way for the sap. To maintain a stable conducting function during plant development, recovery from vascular damages as well as to adapt to environmental changes, TEs are completely dependent on direct cellular interactions with neighboring xylem parenchyma cells (XPs).
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Affiliation(s)
- Delphine Ménard
- Umeå Plant Science Centre (UPSC), Department of Plant Physiology, Umeå University, S-901 87 Umeå, Sweden
| | - Edouard Pesquet
- Umeå Plant Science Centre (UPSC), Department of Plant Physiology, Umeå University, S-901 87 Umeå, Sweden.
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65
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Lachenbruch B, McCulloh KA. Traits, properties, and performance: how woody plants combine hydraulic and mechanical functions in a cell, tissue, or whole plant. THE NEW PHYTOLOGIST 2014; 204:747-64. [PMID: 25250668 DOI: 10.1111/nph.13035] [Citation(s) in RCA: 86] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2014] [Accepted: 07/30/2014] [Indexed: 05/10/2023]
Abstract
This review presents a framework for evaluating how cells, tissues, organs, and whole plants perform both hydraulic and mechanical functions. The morphological alterations that affect dual functionality are varied: individual cells can have altered morphology; tissues can have altered partitioning to functions or altered cell alignment; and organs and whole plants can differ in their allocation to different tissues, or in the geometric distribution of the tissues they have. A hierarchical model emphasizes that morphological traits influence the hydraulic or mechanical properties; the properties, combined with the plant unit's environment, then influence the performance of that plant unit. As a special case, we discuss the mechanisms by which the proxy property wood density has strong correlations to performance but without direct causality. Traits and properties influence multiple aspects of performance, and there can be mutual compensations such that similar performance occurs. This compensation emphasizes that natural selection acts on, and a plant's viability is determined by, its performance, rather than its contributing traits and properties. Continued research on the relationships among traits, and on their effects on multiple aspects of performance, will help us better predict, manage, and select plant material for success under multiple stresses in the future.
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Affiliation(s)
- Barbara Lachenbruch
- Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR, 97331, USA
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66
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Yu L, Chen H, Sun J, Li L. PtrKOR1 is required for secondary cell wall cellulose biosynthesis in Populus. TREE PHYSIOLOGY 2014; 34:1289-300. [PMID: 24728296 DOI: 10.1093/treephys/tpu020] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
KORRIGAN (KOR), encoding an endo-1,4-β-glucanase, plays a critical role in the cellulose synthesis of plant cell wall formation. KOR sequence orthologs are duplicated in the Populus genome relative to Arabidopsis. This study reports an expression analysis of the KOR genes in Populus. The five PtrKOR genes displayed different expression patterns, suggesting that they play roles in different developmental processes. Through RNAi suppression, results demonstrated that PtrKOR1 is required for secondary cell wall cellulose formation in Populus. Together, the results suggest that the PtrKOR genes may play distinct roles in association with cell wall formation in different tissues.
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Affiliation(s)
- Liangliang Yu
- National Key Laboratory of Plant Molecular Genetics/CAS Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China
| | - Hongpeng Chen
- National Key Laboratory of Plant Molecular Genetics/CAS Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China Present address: China Eucalyptus Research Center, 30 Middle Renmin Ave, Zhanjiang, Guangdong 524022, China
| | - Jiayan Sun
- National Key Laboratory of Plant Molecular Genetics/CAS Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China
| | - Laigeng Li
- National Key Laboratory of Plant Molecular Genetics/CAS Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China
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67
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Zeitoun AM, Preisner M, Kulma A, Dymińska L, Hanuza J, Starzycki M, Szopa J. Does biopolymers composition in seeds contribute to the flax resistance against theFusariuminfection? Biotechnol Prog 2014; 30:992-1004. [DOI: 10.1002/btpr.1965] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2014] [Revised: 07/09/2014] [Indexed: 01/03/2023]
Affiliation(s)
- Ahmed M. Zeitoun
- Faculty of Biotechnology; University of Wroclaw; 51-148 Wroclaw Poland
- Faculty of Agriculture; Alexandria University; Saba Basha Alexandria Egypt
| | - Marta Preisner
- Faculty of Biotechnology; University of Wroclaw; 51-148 Wroclaw Poland
- Wroclaw Research Center EIT+; 54-066 Wroclaw Poland
| | - Anna Kulma
- Faculty of Biotechnology; University of Wroclaw; 51-148 Wroclaw Poland
- Wroclaw Research Center EIT+; 54-066 Wroclaw Poland
| | - Lucyna Dymińska
- Dept. of Bioorganic Chemistry, Inst. of Chemistry and Food Technology, Faculty of Engineering and Economics; Wroclaw University of Economics; 50-345 Wroclaw Poland
| | - Jerzy Hanuza
- Dept. of Bioorganic Chemistry, Inst. of Chemistry and Food Technology, Faculty of Engineering and Economics; Wroclaw University of Economics; 50-345 Wroclaw Poland
- Inst. of Low Temperatures and Structure Research, Polish Academy of Sciences; 50-422 Wrocław Poland
| | - Michal Starzycki
- The Plant Breeding and Acclimatization Inst. (IHAR)-National Research Inst., Research Div; Poznan 60-479 Poznan Poland
| | - Jan Szopa
- Faculty of Biotechnology; University of Wroclaw; 51-148 Wroclaw Poland
- Wroclaw Research Center EIT+; 54-066 Wroclaw Poland
- Linum Foundation; 54-066 Wroclaw Poland
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68
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Sengupta S, Majumder AL. Physiological and genomic basis of mechanical-functional trade-off in plant vasculature. FRONTIERS IN PLANT SCIENCE 2014; 5:224. [PMID: 24904619 PMCID: PMC4035604 DOI: 10.3389/fpls.2014.00224] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2014] [Accepted: 05/05/2014] [Indexed: 05/13/2023]
Abstract
Some areas in plant abiotic stress research are not frequently addressed by genomic and molecular tools. One such area is the cross reaction of gravitational force with upward capillary pull of water and the mechanical-functional trade-off in plant vasculature. Although frost, drought and flooding stress greatly impact these physiological processes and consequently plant performance, the genomic and molecular basis of such trade-off is only sporadically addressed and so is its adaptive value. Embolism resistance is an important multiple stress- opposition trait and do offer scopes for critical insight to unravel and modify the input of living cells in the process and their biotechnological intervention may be of great importance. Vascular plants employ different physiological strategies to cope with embolism and variation is observed across the kingdom. The genomic resources in this area have started to emerge and open up possibilities of synthesis, validation and utilization of the new knowledge-base. This review article assesses the research till date on this issue and discusses new possibilities for bridging physiology and genomics of a plant, and foresees its implementation in crop science.
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Affiliation(s)
- Sonali Sengupta
- Division of Plant Biology, Acharya J C Bose Biotechnology Innovation Centre, Bose InstituteKolkata, India
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69
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Frei M. Lignin: characterization of a multifaceted crop component. ScientificWorldJournal 2013; 2013:436517. [PMID: 24348159 PMCID: PMC3848262 DOI: 10.1155/2013/436517] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2013] [Accepted: 09/24/2013] [Indexed: 11/17/2022] Open
Abstract
Lignin is a plant component with important implications for various agricultural disciplines. It confers rigidity to cell walls, and is therefore associated with tolerance to abiotic and biotic stresses and the mechanical stability of plants. In animal nutrition, lignin is considered an antinutritive component of forages as it cannot be readily fermented by rumen microbes. In terms of energy yield from biomass, the role of lignin depends on the conversion process. It contains more gross energy than other cell wall components and therefore confers enhanced heat value in thermochemical processes such as direct combustion. Conversely, it negatively affects biological energy conversion processes such as bioethanol or biogas production, as it inhibits microbial fermentation of the cell wall. Lignin from crop residues plays an important role in the soil organic carbon cycling, as it constitutes a recalcitrant carbon pool affecting nutrient mineralization and carbon sequestration. Due to the significance of lignin in several agricultural disciplines, the modification of lignin content and composition by breeding is becoming increasingly important. Both mapping of quantitative trait loci and transgenic approaches have been adopted to modify lignin in crops. However, breeding goals must be defined considering the conflicting role of lignin in different agricultural disciplines.
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Affiliation(s)
- Michael Frei
- Division of Abiotic Stress Tolerance in Crops, Institute of Crop Science and Resource Conservation (INRES), University of Bonn, Karlrobert-Kreiten Straße 13, 53115 Bonn, Germany
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70
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Porth I, Klápště J, Skyba O, Friedmann MC, Hannemann J, Ehlting J, El-Kassaby YA, Mansfield SD, Douglas CJ. Network analysis reveals the relationship among wood properties, gene expression levels and genotypes of natural Populus trichocarpa accessions. THE NEW PHYTOLOGIST 2013; 200:727-742. [PMID: 23889128 DOI: 10.1111/nph.12419] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2013] [Accepted: 06/17/2013] [Indexed: 05/21/2023]
Abstract
High-throughput approaches have been widely applied to elucidate the genetic underpinnings of industrially important wood properties. Wood traits are polygenic in nature, but gene hierarchies can be assessed to identify the most important gene variants controlling specific traits within complex networks defining the overall wood phenotype. We tested a large set of genetic, genomic, and phenotypic information in an integrative approach to predict wood properties in Populus trichocarpa. Nine-yr-old natural P. trichocarpa trees including accessions with high contrasts in six traits related to wood chemistry and ultrastructure were profiled for gene expression on 49k Nimblegen (Roche NimbleGen Inc., Madison, WI, USA) array elements and for 28,831 polymorphic single nucleotide polymorphisms (SNPs). Pre-selected transcripts and SNPs with high statistical dependence on phenotypic traits were used in Bayesian network learning procedures with a stepwise K2 algorithm to infer phenotype-centric networks. Transcripts were pre-selected at a much lower logarithm of Bayes factor (logBF) threshold than SNPs and were not accommodated in the networks. Using persistent variables, we constructed cross-validated networks for variability in wood attributes, which contained four to six variables with 94-100% predictive accuracy. Accommodated gene variants revealed the hierarchy in the genetic architecture that underpins substantial phenotypic variability, and represent new tools to support the maximization of response to selection.
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Affiliation(s)
- Ilga Porth
- Department of Wood Science, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4
- Department of Botany, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4
| | - Jaroslav Klápště
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4
- Department of Dendrology and Forest Tree Breeding, Faculty of Forestry and Wood Sciences, Czech University of Life Sciences, Prague, 165 21, Czech Republic
| | - Oleksandr Skyba
- Department of Wood Science, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4
| | - Michael C Friedmann
- Department of Botany, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4
| | - Jan Hannemann
- Department of Biology and Centre for Forest Biology, University of Victoria, Victoria, BC, Canada, V8W 3N5
| | - Juergen Ehlting
- Department of Biology and Centre for Forest Biology, University of Victoria, Victoria, BC, Canada, V8W 3N5
| | - Yousry A El-Kassaby
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4
| | - Shawn D Mansfield
- Department of Wood Science, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4
| | - Carl J Douglas
- Department of Botany, University of British Columbia, Vancouver, BC, Canada, V6T 1Z4
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71
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Häggman H, Raybould A, Borem A, Fox T, Handley L, Hertzberg M, Lu MZ, Macdonald P, Oguchi T, Pasquali G, Pearson L, Peter G, Quemada H, Séguin A, Tattersall K, Ulian E, Walter C, McLean M. Genetically engineered trees for plantation forests: key considerations for environmental risk assessment. PLANT BIOTECHNOLOGY JOURNAL 2013; 11:785-98. [PMID: 23915092 PMCID: PMC3823068 DOI: 10.1111/pbi.12100] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2013] [Revised: 06/18/2013] [Accepted: 06/23/2013] [Indexed: 05/18/2023]
Abstract
Forests are vital to the world's ecological, social, cultural and economic well-being yet sustainable provision of goods and services from forests is increasingly challenged by pressures such as growing demand for wood and other forest products, land conversion and degradation, and climate change. Intensively managed, highly productive forestry incorporating the most advanced methods for tree breeding, including the application of genetic engineering (GE), has tremendous potential for producing more wood on less land. However, the deployment of GE trees in plantation forests is a controversial topic and concerns have been particularly expressed about potential harms to the environment. This paper, prepared by an international group of experts in silviculture, forest tree breeding, forest biotechnology and environmental risk assessment (ERA) that met in April 2012, examines how the ERA paradigm used for GE crop plants may be applied to GE trees for use in plantation forests. It emphasizes the importance of differentiating between ERA for confined field trials of GE trees, and ERA for unconfined or commercial-scale releases. In the case of the latter, particular attention is paid to characteristics of forest trees that distinguish them from shorter-lived plant species, the temporal and spatial scale of forests, and the biodiversity of the plantation forest as a receiving environment.
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Affiliation(s)
- Hely Häggman
- Department of Biology, University of OuluOulu, Finland
| | - Alan Raybould
- Syngenta Jealott's Hill International Research CentreBracknell, UK
| | - Aluizio Borem
- Departamento de Fitotecnia, Universidade Federal de ViçosaViçosa, Brazil
| | - Thomas Fox
- Department of Forest Resources and Environmental Conservation, Virginia Polytechnic Institute and State UniversityBlacksburg, VA, USA
| | - Levis Handley
- Biotechnology Regulatory Services, United States Department of AgricultureRiverdale, MD, USA
| | | | - Meng-Zu Lu
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of ForestryBeijing, China
| | - Philip Macdonald
- Plant and Biotechnology Risk Assessment, Canadian Food Inspection AgencyOttawa, ON, Canada
| | - Taichi Oguchi
- Gene Research Center, University of TsukubaTsukuba, Japan
| | - Giancarlo Pasquali
- Centro de Biotecnologia, Universidade Federal do Rio Grande do SulPorto Alegre, Brazil
| | | | - Gary Peter
- School of Forest Resources and Conservation, University of FloridaGainesville, FL, USA
| | | | | | | | | | | | - Morven McLean
- Center for Environmental Risk AssessmentWashington, DC, USA
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72
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Tian X, Xie J, Zhao Y, Lu H, Liu S, Qu L, Li J, Gai Y, Jiang X. Sense-, antisense- and RNAi-4CL1 regulate soluble phenolic acids, cell wall components and growth in transgenic Populus tomentosa Carr. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2013; 65:111-119. [PMID: 23434928 DOI: 10.1016/j.plaphy.2013.01.010] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2012] [Accepted: 01/22/2013] [Indexed: 06/01/2023]
Abstract
Regulation of lignin biosynthesis affects plant growth and wood properties. Transgenic downregulation of 4-coumarate:coenzyme A ligase (4CL, EC 6.2.1.12) may reduce lignin content in cell walls, which could improve the qualities of pulp in papermaking and increase the efficiency of bioenergy applications. To determine the effects of Ptc4CL1 on lignin biosynthesis and plant growth, Populus tomentosa Carr. was transformed using sense-, antisense-, and RNAi-4CL1 genes. The growth properties, gene expression, enzyme activity, lignin content and composition and content of soluble phenolic acids were investigated in 1-year-old field-grown transgenic poplar trees. Transgenic up- and down-regulation of 4CL1 altered lignin content and composition in transgenic poplars, but there were no negative effects on the growth of transgenic plants. In addition, the severe changes in auxin observed in transgenic lines led to significantly enhanced growth performance. Furthermore, lignin content was tightly correlated with the alteration of 4CL1 enzymatic activity, which was correlated with 4CL1 gene expression. A significant increase in S units in lignin with a slight increase in sinapic acid was observed in 4CL1 down-regulated transgenic poplars. These results suggest that 4CL1 is a traffic control gene in monolignol biosynthesis and confirm that 4CL1 activity has been implicated with sinapoyl activation. Finally, our data demonstrate that there is cross-correlation among 4CL1 gene expression, 4CL1 enzyme activity, soluble phenolic acid, lignin monomer biosynthesis, and lignin content.
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Affiliation(s)
- Xiaoming Tian
- College of Life Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, PR China.
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73
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Plavcová L, Jansen S, Klepsch M, Hacke UG. Nobody's perfect: can irregularities in pit structure influence vulnerability to cavitation? FRONTIERS IN PLANT SCIENCE 2013; 4:453. [PMID: 24273549 PMCID: PMC3824106 DOI: 10.3389/fpls.2013.00453] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2013] [Accepted: 10/22/2013] [Indexed: 05/04/2023]
Abstract
Recent studies have suggested that species-specific pit properties such as pit membrane thickness, pit membrane porosity, torus-to-aperture diameter ratio and pit chamber depth influence xylem vulnerability to cavitation. Despite the indisputable importance of using mean pit characteristics, considerable variability in pit structure within a single species or even within a single pit field should be acknowledged. According to the rare pit hypothesis, a single pit that is more air-permeable than many neighboring pits is sufficient to allow air-seeding. Therefore, any irregularities or morphological abnormalities in pit structure allowing air-seeding should be associated with increased vulnerability to cavitation. Considering the currently proposed models of air-seeding, pit features such as rare, large pores in the pit membrane, torus extensions, and plasmodesmatal pores in a torus can represent potential glitches. These aberrations in pit structure could either result from inherent developmental flaws, or from damage caused to the pit membrane by chemical and physical agents. This suggests the existence of interesting feedbacks between abiotic and biotic stresses in xylem physiology.
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Affiliation(s)
- Lenka Plavcová
- Institute for Systematic Botany and Ecology, Ulm UniversityUlm, Germany
- *Correspondence: Lenka Plavcová, Institute for Systematic Botany and Ecology, Ulm University, Albert-Einstein-Allee 11, D-89081 Ulm, Germany e-mail:
| | - Steven Jansen
- Institute for Systematic Botany and Ecology, Ulm UniversityUlm, Germany
| | - Matthias Klepsch
- Institute for Systematic Botany and Ecology, Ulm UniversityUlm, Germany
| | - Uwe G. Hacke
- Department of Renewable Resources, University of AlbertaEdmonton, AB, Canada
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74
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Mott KA. Virtual special issue (VSI) on whole-plant water transport. PLANT, CELL & ENVIRONMENT 2012; 35:1879-1880. [PMID: 23043350 DOI: 10.1111/pce.12010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
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75
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Hacke UG, Jacobsen AL, Brandon Pratt R, Maurel C, Lachenbruch B, Zwiazek J. New research on plant-water relations examines the molecular, structural, and physiological mechanisms of plant responses to their environment. THE NEW PHYTOLOGIST 2012; 196:345-348. [PMID: 22978612 DOI: 10.1111/j.1469-8137.2012.04335.x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Affiliation(s)
- Uwe G Hacke
- Department of Renewable Resources, University of Alberta, Edmonton, Canada
| | - Anna L Jacobsen
- Plant Ecology and Evolutionary Biology, California State University, Bakersfield, CA, USA
| | - R Brandon Pratt
- Plant Ecology and Evolutionary Biology, California State University, Bakersfield, CA, USA
| | - Christophe Maurel
- Biochimie et Physiologie Moleculaire des Plantes, CNRS-INRA, Montpellier, France
| | - Barbara Lachenbruch
- Department of Forest Ecosystems and Society, Oregon State University, Corvallis, OR, USA
| | - Janusz Zwiazek
- Department of Renewable Resources, University of Alberta, Edmonton, Canada
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76
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Dié A, Kitin P, Kouamé FN, Van den Bulcke J, Van Acker J, Beeckman H. Fluctuations of cambial activity in relation to precipitation result in annual rings and intra-annual growth zones of xylem and phloem in teak (Tectona grandis) in Ivory Coast. ANNALS OF BOTANY 2012; 110:861-73. [PMID: 22805529 PMCID: PMC3423803 DOI: 10.1093/aob/mcs145] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2012] [Accepted: 04/26/2012] [Indexed: 05/22/2023]
Abstract
BACKGROUND AND AIMS Teak forms xylem rings that potentially carry records of carbon sequestration and climate in the tropics. These records are only useful when the structural variations of tree rings and their periodicity of formation are known. METHODS The seasonality of ring formation in mature teak trees was examined via correlative analysis of cambial activity, xylem and phloem formation, and climate throughout 1·5 years. Xylem and phloem differentiation were visualized by light microscopy and scanning electron microscopy. KEY RESULTS A 3 month dry season resulted in semi-deciduousness, cambial dormancy and formation of annual xylem growth rings (AXGRs). Intra-annual xylem and phloem growth was characterized by variable intensity. Morphometric features of cambium such as cambium thickness and differentiating xylem layers were positively correlated. Cambium thickness was strongly correlated with monthly rainfall (R(2) = 0·7535). In all sampled trees, xylem growth zones (XGZs) were formed within the AXGRs during the seasonal development of new foliage. When trees achieved full leaf, the xylem in the new XGZs appeared completely differentiated and functional for water transport. Two phloem growth rings were formed in one growing season. CONCLUSIONS The seasonal formation pattern and microstructure of teak xylem suggest that AXGRs and XGZs can be used as proxies for analyses of the tree history and climate at annual and intra-annual resolution.
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Affiliation(s)
| | - Peter Kitin
- Laboratory for wood biology, Royal Museum for Central Africa-Tervuren/Belgium
- USDA Forest Products Laboratory, One Gifford Pinchot Drive, Madison, WI 53726, USA
- For correspondence. E-mail
| | | | - Jan Van den Bulcke
- UGCT-Laboratory of Wood Technology, Department of Forest and Water Management, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Joris Van Acker
- UGCT-Laboratory of Wood Technology, Department of Forest and Water Management, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Hans Beeckman
- Laboratory for wood biology, Royal Museum for Central Africa-Tervuren/Belgium
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77
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Kaur H, Shaker K, Heinzel N, Ralph J, Gális I, Baldwin IT. Environmental stresses of field growth allow cinnamyl alcohol dehydrogenase-deficient Nicotiana attenuata plants to compensate for their structural deficiencies. PLANT PHYSIOLOGY 2012; 159:1545-70. [PMID: 22645069 PMCID: PMC3425196 DOI: 10.1104/pp.112.196717] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2012] [Accepted: 05/03/2012] [Indexed: 05/02/2023]
Abstract
The organized lignocellulosic assemblies of cell walls provide the structural integrity required for the large statures of terrestrial plants. Silencing two CINNAMYL ALCOHOL DEHYDROGENASE (CAD) genes in Nicotiana attenuata produced plants (ir-CAD) with thin, red-pigmented stems, low CAD and sinapyl alcohol dehydrogenase activity, low lignin contents, and rubbery, structurally unstable stems when grown in the glasshouse (GH). However, when planted into their native desert habitat, ir-CAD plants produced robust stems that survived wind storms as well as the wild-type plants. Despite efficient silencing of NaCAD transcripts and enzymatic activity, field-grown ir-CAD plants had delayed and restricted spread of red stem pigmentation, a color change reflecting blocked lignification by CAD silencing, and attained wild-type-comparable total lignin contents. The rubbery GH phenotype was largely restored when field-grown ir-CAD plants were protected from wind, herbivore attack, and ultraviolet B exposure and grown in restricted rooting volumes; conversely, it was lost when ir-CAD plants were experimentally exposed to wind, ultraviolet B, and grown in large pots in growth chambers. Transcript and liquid chromatography-electrospray ionization-time-of-flight analysis revealed that these environmental stresses enhanced the accumulation of various phenylpropanoids in stems of field-grown plants; gas chromatography-mass spectrometry and nuclear magnetic resonance analysis revealed that the lignin of field-grown ir-CAD plants had GH-grown comparable levels of sinapaldehyde and syringaldehyde cross-linked into their lignins. Additionally, field-grown ir-CAD plants had short, thick stems with normal xylem element traits, which collectively enabled field-grown ir-CAD plants to compensate for the structural deficiencies associated with CAD silencing. Environmental stresses play an essential role in regulating lignin biosynthesis in lignin-deficient plants.
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Affiliation(s)
| | | | | | - John Ralph
- Department of Molecular Ecology (H.K., N.H., I.G., I.T.B.) and Department of Biosynthesis/Nuclear Magnetic Resonance (K.S.), Max-Planck Institute for Chemical Ecology, Jena 07745, Germany; Department of Biochemistry and Department of Energy Great Lakes Bioenergy Research Center, University of Wisconsin, Madison, Wisconsin 53706 (J.R.); and Institute of Plant Science and Resources, Okayama University, Okayama 710–0046, Japan (I.G.)
| | - Ivan Gális
- Department of Molecular Ecology (H.K., N.H., I.G., I.T.B.) and Department of Biosynthesis/Nuclear Magnetic Resonance (K.S.), Max-Planck Institute for Chemical Ecology, Jena 07745, Germany; Department of Biochemistry and Department of Energy Great Lakes Bioenergy Research Center, University of Wisconsin, Madison, Wisconsin 53706 (J.R.); and Institute of Plant Science and Resources, Okayama University, Okayama 710–0046, Japan (I.G.)
| | - Ian T. Baldwin
- Department of Molecular Ecology (H.K., N.H., I.G., I.T.B.) and Department of Biosynthesis/Nuclear Magnetic Resonance (K.S.), Max-Planck Institute for Chemical Ecology, Jena 07745, Germany; Department of Biochemistry and Department of Energy Great Lakes Bioenergy Research Center, University of Wisconsin, Madison, Wisconsin 53706 (J.R.); and Institute of Plant Science and Resources, Okayama University, Okayama 710–0046, Japan (I.G.)
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78
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Eudes A, George A, Mukerjee P, Kim JS, Pollet B, Benke PI, Yang F, Mitra P, Sun L, Cetinkol OP, Chabout S, Mouille G, Soubigou-Taconnat L, Balzergue S, Singh S, Holmes BM, Mukhopadhyay A, Keasling JD, Simmons BA, Lapierre C, Ralph J, Loqué D. Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification. PLANT BIOTECHNOLOGY JOURNAL 2012; 10:609-20. [PMID: 22458713 DOI: 10.1111/j.1467-7652.2012.00692.x] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Lignocellulosic biomass is utilized as a renewable feedstock in various agro-industrial activities. Lignin is an aromatic, hydrophobic and mildly branched polymer integrally associated with polysaccharides within the biomass, which negatively affects their extraction and hydrolysis during industrial processing. Engineering the monomer composition of lignins offers an attractive option towards new lignins with reduced recalcitrance. The presented work describes a new strategy developed in Arabidopsis for the overproduction of rare lignin monomers to reduce lignin polymerization degree (DP). Biosynthesis of these 'DP reducers' is achieved by expressing a bacterial hydroxycinnamoyl-CoA hydratase-lyase (HCHL) in lignifying tissues of Arabidopsis inflorescence stems. HCHL cleaves the propanoid side-chain of hydroxycinnamoyl-CoA lignin precursors to produce the corresponding hydroxybenzaldehydes so that plant stems expressing HCHL accumulate in their cell wall higher amounts of hydroxybenzaldehyde and hydroxybenzoate derivatives. Engineered plants with intermediate HCHL activity levels show no reduction in total lignin, sugar content or biomass yield compared with wild-type plants. However, cell wall characterization of extract-free stems by thioacidolysis and by 2D-NMR revealed an increased amount of unusual C₆C₁ lignin monomers most likely linked with lignin as end-groups. Moreover the analysis of lignin isolated from these plants using size-exclusion chromatography revealed a reduced molecular weight. Furthermore, these engineered lines show saccharification improvement of pretreated stem cell walls. Therefore, we conclude that enhancing the biosynthesis and incorporation of C₆C₁ monomers ('DP reducers') into lignin polymers represents a promising strategy to reduce lignin DP and to decrease cell wall recalcitrance to enzymatic hydrolysis.
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Affiliation(s)
- Aymerick Eudes
- Joint BioEnergy Institute, EmeryStation East, Emeryville, CA, USA
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79
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Prashant S, Srilakshmi Sunita M, Pramod S, Gupta RK, Anil Kumar S, Rao Karumanchi S, Rawal SK, Kavi Kishor PB. Down-regulation of Leucaena leucocephala cinnamoyl CoA reductase (LlCCR) gene induces significant changes in phenotype, soluble phenolic pools and lignin in transgenic tobacco. PLANT CELL REPORTS 2011; 30:2215-31. [PMID: 21847621 DOI: 10.1007/s00299-011-1127-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2011] [Revised: 06/19/2011] [Accepted: 07/14/2011] [Indexed: 05/02/2023]
Abstract
cDNA and genomic clones of cinnamoyl CoA reductase measuring 1011 and 2992 bp were isolated from a leguminous pulpwood tree Leucaena leucocephala, named as LlCCR. The cDNA exhibited 80-85% homology both at the nucleotide and amino acid levels with other known sequences. The genomic sequence contained five exons and four introns. Sense and antisense constructs of LlCCR were introduced in tobacco plants to up and down-regulate this key enzyme of lignification. The primary transformants showed a good correlation between CCR transcript levels and its activity. Most of the CCR down-regulated lines displayed stunted growth and development, wrinkled leaves and delayed senescence. These lines accumulated unusual phenolics like ferulic and sinapic acids in cell wall. Histochemical staining suggested reduction in aldehyde units and increased syringyl over guaiacyl (S/G) ratio of lignin. Anatomical studies showed thin walled, elongated xylem fibres, collapsed vessels with drastic reduction of secondary xylem. The transmission electron microscopic studies revealed modification of ultrastructure and topochemical distribution of wall polysaccharides and lignin in the xylem fibres. CCR down-regulated lines showed increased thickness of secondary wall layers and poor lignification of S2 and S3 wall layers. The severely down-regulated line AS17 exhibited 24.7% reduction of Klason lignin with an increase of 15% holocellulose content. Contrarily, the CCR up-regulated lines exhibited robust growth, development and significant increase in lignin content. The altered lignin profiles observed in transgenic tobacco lines support a role for CCR down-regulation in improving wood properties of L. leucocephala exclusively used in the pulp and paper industry of India.
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Affiliation(s)
- S Prashant
- Department of Genetics, Osmania University, Hyderabad, 500 007, India
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