51
|
Secondary Metabolites with Biomedical Applications from Plants of the Sarraceniaceae Family. Int J Mol Sci 2022; 23:ijms23179877. [PMID: 36077275 PMCID: PMC9456395 DOI: 10.3390/ijms23179877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Revised: 08/25/2022] [Accepted: 08/26/2022] [Indexed: 11/17/2022] Open
Abstract
Carnivorous plants have fascinated researchers and hobbyists for centuries because of their mode of nutrition which is unlike that of other plants. They are able to produce bioactive compounds used to attract, capture and digest prey but also as a defense mechanism against microorganisms and free radicals. The main purpose of this review is to provide an overview of the secondary metabolites with significant biological activity found in the Sarraceniaceae family. The review also underlines the necessity of future studies for the biochemical characterization of the less investigated species. Darlingtonia, Heliamphora and Sarracenia plants are rich in compounds with potential pharmaceutical and medical uses. These belong to several classes such as flavonoids, with flavonol glycosides being the most abundant, monoterpenes, triterpenes, sesquiterpenes, fatty acids, alkaloids and others. Some of them are well characterized in terms of chemical properties and biological activity and have widespread commercial applications. The review also discusses biological activity of whole extracts and commercially available products derived from Sarraceniaceae plants. In conclusion, this review underscores that Sarraceniaceae species contain numerous substances with the potential to advance health. Future perspectives should focus on the discovery of new molecules and increasing the production of known compounds using biotechnological methods.
Collapse
|
52
|
Drought Stress Stimulates the Terpenoid Backbone and Triterpenoid Biosynthesis Pathway to Promote the Synthesis of Saikosaponin in Bupleurum chinense DC. Roots. Molecules 2022; 27:molecules27175470. [PMID: 36080237 PMCID: PMC9457724 DOI: 10.3390/molecules27175470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Revised: 08/22/2022] [Accepted: 08/23/2022] [Indexed: 11/17/2022] Open
Abstract
Bupleurum chinense is an important medicinal plant in China; however, little is known regarding how this plant transcribes and synthesizes saikosaponins under drought stress. Herein, we investigated how drought stress stimulates the transcriptional changes of B. chinense to synthesize saikosaponins. Short-term drought stress induced the accumulation of saikosaponins, especially from the first re-watering stage (RD_1 stage) to the second re-watering stage (RD_2 stage). Saikosaponin-a and saikosaponin-d increased by 84.60% and 75.13%, respectively, from the RD_1 stage to the RD_2 stage. Drought stress also stimulated a rapid increase in the levels of the hormones abscisic acid, salicylic acid, and jasmonic acid. We screened 49 Unigenes regarding the terpenoid backbone and triterpenoid biosynthesis, of which 33 differential genes were significantly up-regulated during drought stress. Moreover, one P450 and two UGTs are possibly involved in the synthesis of saikosaponins, while some transcription factors may be involved in regulating the expression of key enzyme genes. Our study provides a reference for the cultivation of B. chinense and a practical means to ensure the quality (safety and effectiveness) of B. chinense for medicinal use, as well as insights into the modernization of the China Agriculture Research System.
Collapse
|
53
|
Anti-inflammatory properties of novel galloyl glucosides isolated from the Australian tropical plant Uromyrtus metrosideros. Chem Biol Interact 2022; 368:110124. [PMID: 36007634 DOI: 10.1016/j.cbi.2022.110124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Revised: 08/11/2022] [Accepted: 08/17/2022] [Indexed: 11/23/2022]
Abstract
Two new galloyl glucosides, galloyl-lawsoniaside A (4) and uromyrtoside (6), were isolated from the polar fraction of Uromyrtus metrosideros leaf extract along with another four previously identified phytochemicals (1, 2, 3, and 5). The structures of these six compounds were characterised using low and high-resolution mass spectrometry (L/HRMS) and 1D and 2D Nuclear Magnetic Resonance (NMR) spectroscopy. These compounds were not toxic to human peripheral blood mononuclear cells (PBMCs) at 10 μg/mL over 24 h, yet showed significant in vitro suppression of proinflammatory cytokines involved in the pathogenesis of inflammatory bowel disease (IBD). Specifically, the release of interferon γ (IFN-γ), interleukin (IL)-17A, and IL-8 from phorbol myristate acetate/ionomycin (P/I) and anti-CD3/anti-CD28-activated cells were significantly suppressed by compounds 4 and 5. Interestingly, no effect on tumour necrosis factor (TNF) release was observed. These results show that the newly characterised compound 4 has promising cytokine suppressive properties, which could be further investigated as a candidate for IBD treatment.
Collapse
|
54
|
Smit SJ, Lichman BR. Plant biosynthetic gene clusters in the context of metabolic evolution. Nat Prod Rep 2022; 39:1465-1482. [PMID: 35441651 PMCID: PMC9298681 DOI: 10.1039/d2np00005a] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Indexed: 12/17/2022]
Abstract
Covering: up to 2022Plants produce a wide range of structurally and biosynthetically diverse natural products to interact with their environment. These specialised metabolites typically evolve in limited taxonomic groups presumably in response to specific selective pressures. With the increasing availability of sequencing data, it has become apparent that in many cases the genes encoding biosynthetic enzymes for specialised metabolic pathways are not randomly distributed on the genome. Instead they are physically linked in structures such as arrays, pairs and clusters. The exact function of these clusters is debated. In this review we take a broad view of gene arrangement in plant specialised metabolism, examining types of structures and variation. We discuss the evolution of biosynthetic gene clusters in the wider context of metabolism, populations and epigenetics. Finally, we synthesise our observations to propose a new hypothesis for biosynthetic gene cluster formation in plants.
Collapse
Affiliation(s)
- Samuel J Smit
- Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK.
| | - Benjamin R Lichman
- Centre for Novel Agricultural Products, Department of Biology, University of York, York, YO10 5DD, UK.
| |
Collapse
|
55
|
Vilkickyte G, Motiekaityte V, Vainoriene R, Raudone L. Promising cultivars and intraspecific taxa of lingonberries (Vaccinium vitis-idaea L.): profiling of phenolics and triterpenoids. J Food Compost Anal 2022. [DOI: 10.1016/j.jfca.2022.104796] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
|
56
|
Kaur A, Kaur S, Singh HP, Batish DR. Alterations in phytotoxicity and allelochemistry in response to intraspecific variation in Parthenium hysterophorus. ECOLOGICAL COMPLEXITY 2022. [DOI: 10.1016/j.ecocom.2022.100999] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
|
57
|
Badalamenti N, Modica A, Bazan G, Marino P, Bruno M. The ethnobotany, phytochemistry, and biological properties of Nigella damascena - A review. PHYTOCHEMISTRY 2022; 198:113165. [PMID: 35339516 DOI: 10.1016/j.phytochem.2022.113165] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 03/07/2022] [Accepted: 03/11/2022] [Indexed: 06/14/2023]
Abstract
This review is a systematic scientific work on medicinal and traditional use, on the chemical composition of specialized metabolites, volatile and non-volatile, on aspects related to toxicology and phytotherapy of Nigella damascena L. The genus Nigella (Ranunculaceae) is distributed throughout the Mediterranean basin, extending to northern India, and has been divided into three sections. Nigella damanscena L. is traditionally used as an ingredient in food, for example, as flavouring agents in bread and cheese, but is also known in folk medicine, used to regulate menstruation; for catarrhal affections and amenorrhea; as a diuretic and sternutatory; as an analgesic, anti-oedematous, and antipyretic; and for vermifuge and its disinfectant effects. This paper reviews the most dated to the latest scientific research on this species, highlighting the single isolated metabolites and exploring their biological activity. Fifty-seven natural compounds have been isolated and characterised from the seeds, roots, and aerial parts of the plant. Among these constituents, alkaloids, flavonoids, diterpenes, triterpenes, and aromatic compounds are the main constituents. The isolated compounds and the various extracts obtained with solvents of different polarities presented a diverse spectrum of biological activities such as antibacterial, antifungal, antitumour, antioxidant, anti-inflammatory, antipyretic, anti-oedema, and antiviral activities. Various in vitro and in vivo tests have demonstrated the pharmacological potential of β-elemene and alkaloid damascenin. Unfortunately, the largest number of biological studies on this species and its metabolites have been conducted in vitro; therefore, further investigation is necessary to evaluate the toxicological aspects and real mechanisms of action of crude extracts to confirm the therapeutic potential of N. damascena.
Collapse
Affiliation(s)
- Natale Badalamenti
- Department of Biological, Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, Palermo, Italy
| | - Aurora Modica
- Department of Biological, Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, Palermo, Italy
| | - Giuseppe Bazan
- Department of Biological, Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, Palermo, Italy.
| | | | - Maurizio Bruno
- Department of Biological, Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, Palermo, Italy; Centro Interdipartimentale di Ricerca 'Riutilizzo Bio-based degli scarti da matrici agroalimentari' (RIVIVE), University of Palermo, Italy
| |
Collapse
|
58
|
Massad TJ, Richards LA, Philbin C, Fumiko Yamaguchi L, Kato MJ, Jeffrey CS, Oliveira C, Ochsenrider K, M de Moraes M, Tepe EJ, Cebrian Torrejon G, Sandivo M, Dyer LA. The chemical ecology of tropical forest diversity: Environmental variation, chemical similarity, herbivory, and richness. Ecology 2022; 103:e3762. [PMID: 35593436 DOI: 10.1002/ecy.3762] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 03/01/2022] [Accepted: 03/18/2022] [Indexed: 11/11/2022]
Abstract
Species richness in tropical forests is correlated with other dimensions of diversity, including the diversity of plant-herbivore interactions and the phytochemical diversity that influences those interactions. Understanding the complexity of plant chemistry and the importance of phytochemical diversity for plant-insect interactions and overall forest richness has been enhanced significantly by the application of metabolomics to natural systems. The present work used proton nuclear magnetic resonance spectroscopy (1 H-NMR) profiling of crude leaf extracts to study phytochemical similarity and diversity among Piper plants growing naturally in the Atlantic Rainforest of Brazil. Spectral profile similarity and chemical diversity were quantified to examine the relationship between metrics of phytochemical diversity, specialist and generalist herbivory, and understory plant richness. Herbivory increased with understory species richness, while generalist herbivory increased and specialist herbivory decreased with the diversity of Piper leaf material available. Specialist herbivory increased when conspecific host plants were more spectroscopically dissimilar. Spectral similarity was lower among individuals of common species, and they were also more spectrally diverse, indicating phytochemical diversity is beneficial to plants. Canopy openness and soil nutrients also influenced chemistry and herbivory. The complex relationships uncovered in this study add information to our growing understanding of the importance of phytochemical diversity for plant-insect interactions and tropical plant species richness.
Collapse
Affiliation(s)
- Tara Joy Massad
- Department of Scientific Services, Gorongosa National Park, Sofala, Mozambique.,Instituto de Química, Universidade de São Paulo, São Paulo, São Paulo, Brasil
| | - Lora A Richards
- Department of Biology, Program in Ecology, Evolution and Conservation Biology, University of Nevada, Reno, NV, USA.,Hitchcock Center for Chemical Ecology, University of Nevada, Reno, NV, USA
| | - Casey Philbin
- Hitchcock Center for Chemical Ecology, University of Nevada, Reno, NV, USA.,Department of Chemistry, University of Nevada, Reno, NV, USA
| | | | - Massuo J Kato
- Instituto de Química, Universidade de São Paulo, São Paulo, São Paulo, Brasil
| | - Christopher S Jeffrey
- Hitchcock Center for Chemical Ecology, University of Nevada, Reno, NV, USA.,Department of Chemistry, University of Nevada, Reno, NV, USA
| | - Celso Oliveira
- Department of Chemistry, University of Nevada, Reno, NV, USA
| | | | - Marcílio M de Moraes
- Departamento de Química, Universidade Federal Rural de Pernambuco, Pernambuco, Pernambuco, Brasil
| | - Eric J Tepe
- Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA
| | | | | | - Lee A Dyer
- Department of Biology, Program in Ecology, Evolution and Conservation Biology, University of Nevada, Reno, NV, USA.,Hitchcock Center for Chemical Ecology, University of Nevada, Reno, NV, USA
| |
Collapse
|
59
|
Uddin N, Muhammad N, Nisar M, Aisha, Ali N, Ullah R, Ali EA, Khan AA, Rahman IU, Khan A, Zeb A. Distribution of polyphenolic compounds, antioxidant potential, and free amino acids in Ziziphus fruits extract; a study for determining the influence of wider geography. Food Sci Nutr 2022; 10:1414-1430. [PMID: 35592302 PMCID: PMC9094459 DOI: 10.1002/fsn3.2726] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Revised: 11/04/2021] [Accepted: 12/08/2021] [Indexed: 01/20/2023] Open
Abstract
Ziziphus fruits have attracted much attention within the field of medicine due to their high potential against central nervous system disorders. Abundance of secondary metabolites and their composition is key to the pharmaceutical potential and commercial qualities of plants. The in vitro antioxidant activities of Ziziphus nummularia (Burm. f.) and Ziziphus oxyphylla Edgew fruit extract were analyzed using 2,2‐diphenil‐1‐pycrilhydrazyl (DPPH) and 2,2′‐azino‐bis (3‐ethylbenzothiazoline)‐6‐sulfonic acid (ABTS) free radical scavenging assay methods. Phenolic profiles were explored using high‐performance liquid chromatography‐diode array detector (HPLC‐DAD). The result revealed high concentration of polyphenols and their antioxidant potential. In Z. nummularia, the total phenolic content (TPC) (80.270 ± 0.422 μg/ml), DPPH (62.03 ± 0.98 μg/ml), ABTS (66.32 ± 0.73 μg/ml), and TFC (90.683 ± 0.274 μg/ml) were recorded. However, in Z. oxyphylla, DPPH and ABTS values were 60.66 ± 0.56 μg/ml and 61.55 ± 0.77 μg/ml, respectively, indicative of the impacts of climate and soil nutrients. The overall screening of phytochemicals revealed that both the Ziziphus species contain diverse bioactive compounds, including spinacetine‐3‐O‐(2 feruloyl glucopyranosyl)‐glucopyranoside, kaempferol‐3‐O‐glucoside‐7‐O‐glucoside, and caffeic acid; p‐hydroxybenzoyl hexose, p‐coumaric acid, salicylic acid, and ellagic acid pentoxide. Additionally, the highest concentrated amino acid noted was of Lue 0.19 g/100 g with 596.00 retention time (RT), followed by Thr>Ale>Isl>Phya>Val in Z. nummularia. Similarly, the highest concentration of Lue amino acid was recorded as 0.18/100 g with 564.52 RT followed by Pr>Thr>Ale>Lue>Isl>Phya>Val in all genotypes of Z. oxyphylla. Reporting of polyphenols rich and stable species along with identification of favorable regions of cultivation for amino acid, polyphenols, and higher antioxidant potential may lead the way for the identification of elite clones of the species as well as may result in new drug discovery.
Collapse
Affiliation(s)
- Nisar Uddin
- Department of Botany Hazara University Mansehra Mansehra Pakistan
| | - Noor Muhammad
- Department of Pomology College of Horticulture Hebei Agricultural University Baoding China
| | - Mohammad Nisar
- Department of Botany University of Malakand Checkdara Pakistan
| | - Aisha
- Department of Chemistry University of Gujrat Gujrat Pakistan
| | - Niaz Ali
- Department of Botany Hazara University Mansehra Mansehra Pakistan
| | - Riaz Ullah
- Department of Pharmacognosy College of Pharmacy King Saud University Riyadh Saudi Arabia
| | - Essam A Ali
- Department of Pharmaceutical Chemistry College of Pharmacy King Saud University Riyadh Saudi Arabia
| | - Azhar Abbas Khan
- Department of Biochemistry Hazara University Mansehra Mansehra Pakistan
| | - Inayat Ur Rahman
- Department of Botany Hazara University Mansehra Mansehra Pakistan
| | - Anwar Khan
- Institute of Molecular Plant Science University of Edinburgh Edinburgh UK.,Department of Microbiology BUITEMS Quetta Pakistan
| | - Alam Zeb
- Department of Biochemistry University of Malakand KP Pakistan
| |
Collapse
|
60
|
Yang Y, He Z, Bing Q, Duan X, Chen S, Zeng M, Liu X. Two Dof transcription factors promote flavonoid synthesis in kumquat fruit by activating C-glucosyltransferase. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2022; 318:111234. [PMID: 35351306 DOI: 10.1016/j.plantsci.2022.111234] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 12/31/2021] [Accepted: 02/19/2022] [Indexed: 06/14/2023]
Abstract
Although DNA binding with one finger (Dof) constitutes a crucial plant-specific family of transcription factors (TFs) that plays important roles in a wide range of biological processes, the molecular mechanisms underlying Dof regulation of flavonoid biosynthesis in plants remain largely unknown. Here, we characterized 28 Dof genes (FhDof1-FhDof28) from the 'Hongkong' kumquat (Fortunella hindsii) cultivar genome. Promoter analysis and transcriptome profiling revealed that four FhDofs - FhDof4, FhDof9, FhDof15, and FhDof16 - may be involved in flavonoid biosynthesis through binding to the flavonoid C-glycosyltransferase (FhCGT) promoter. We cloned homologous genes of four FhDofs, designated as FcDof4, FcDof9, FcDof15, FcDof16, and a homologous gene of FhCGT, designated as FcCGT, from the widely cultivated 'HuaPi' kumquat (F. crassifolia). Quantitative reverse transcription-polymerase chain reaction analysis revealed that FcDof4 and FcDof16 were significantly correlated with FcCGT expression during development stages in the 'HuaPi' fruit (Pearson's correlation coefficient > 0.7) and were localized to the nucleus. Results of yeast one-hybrid, electrophoretic mobility shift, and dual-luciferase assays indicated that the two FcDofs trigger FcCGT expression by specifically binding to its promoters. Moreover, transient overexpression of FcDof4 and FcDof16 enhances the transcription of structural genes in the flavonoid biosynthetic pathway and increases C-glycosylflavonoid content. Our results provide strong evidence that the TFs FcDof4 and FcDof16 promote flavonoid synthesis in kumquat fruit by activating FcCGT expression.
Collapse
Affiliation(s)
- Yuyan Yang
- College of Horticulture and Landscape Architecture, Southwest University, Chongqing 400715, China; Key Laboratory of Horticulture Science for Southern Mountainous Regions, Ministry of Education, Chongqing 400715, China
| | - Zhilin He
- College of Horticulture and Landscape Architecture, Southwest University, Chongqing 400715, China
| | - Qihao Bing
- College of Horticulture and Landscape Architecture, Southwest University, Chongqing 400715, China
| | - Xinyuan Duan
- College of Horticulture and Landscape Architecture, Southwest University, Chongqing 400715, China
| | - Suoying Chen
- College of Horticulture and Landscape Architecture, Southwest University, Chongqing 400715, China
| | - Ming Zeng
- College of Horticulture and Landscape Architecture, Southwest University, Chongqing 400715, China; Key Laboratory of Horticulture Science for Southern Mountainous Regions, Ministry of Education, Chongqing 400715, China
| | - Xiaogang Liu
- College of Horticulture and Landscape Architecture, Southwest University, Chongqing 400715, China; Key Laboratory of Horticulture Science for Southern Mountainous Regions, Ministry of Education, Chongqing 400715, China.
| |
Collapse
|
61
|
Sesin V, Freeland JR, Gilbert JM, Stevens KJ, Davy CM. Legacies of invasive plant management: effects of leaching from glyphosate-treated and untreated plants on germination and early growth of native macrophytes. Biol Invasions 2022. [DOI: 10.1007/s10530-022-02794-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
62
|
Chen X, Wang H, Jiang J, Jiang Y, Zhang W, Chen F. Biogeographic and metabolic studies support a glacial radiation hypothesis during Chrysanthemum evolution. HORTICULTURE RESEARCH 2022; 9:uhac153. [PMID: 36196071 PMCID: PMC9527600 DOI: 10.1093/hr/uhac153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Revised: 07/06/2022] [Accepted: 06/29/2022] [Indexed: 06/16/2023]
Abstract
Chrysanthemum (Chrysanthemum morifolium Ramat.) is an economically important plant species growing worldwide. However, its origin, especially as revealed by biogeographic and metabolomics research, remains unclear. To understand the geographic distribution of species diversity and metabolomics in three genera (Chrysanthemum, Ajania, and Phaeostigma), geographic information systems and gas chromatography-mass spectrometry were used in 19, 15, and 4 species respectively. China and Japan were two potential panbiogeographic nodes and diverse hotspots of Chrysanthemum, with species richness ratios of 58.97 and 33.33%. We studied different species from two hotspots which in similar geographical environments had closer chemotaxonomic relationships under the same cultivation conditions based on a cluster of 30 secondary metabolites. The average distribution altitude (ADA) differed significantly among Chrysanthemum, Ajania, and Phaeostigma in which it was 1227.49, 2400.12, and 3760.53 m.a.s.l. respectively, and the presence/absence of ray florets (RF) was significantly correlated with ADA (-0.62). Mountain landform was an important contributor to global Chrysanthemum diversity, playing a key role in the divergence and distribution pattern of Chrysanthemum and its allies. The Hengduan Mountains-Qinling Mountains (HDQ) in China was a potential secondary radiation and evolution center of Chrysanthemum and its related genera in the world. During the Quaternary glacial-interglacial cycles, this region became their refuge, and they radiated and evolved from this center.
Collapse
Affiliation(s)
- Xi Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, 210095 Nanjing, China
- College of Agriculture and Biological Sciences, Dali University, 671003 Dali, China
| | - Haibin Wang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, 210095 Nanjing, China
| | - Jiafu Jiang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, 210095 Nanjing, China
| | - Yifan Jiang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, 210095 Nanjing, China
| | - Wanbo Zhang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Landscaping, Ministry of Agriculture and Rural Affairs, Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration, College of Horticulture, Nanjing Agricultural University, 210095 Nanjing, China
| | | |
Collapse
|
63
|
Wan Q, Bai T, Liu M, Liu Y, Xie Y, Zhang T, Huang M, Zhang J. Comparative Analysis of the Chalcone-Flavanone Isomerase Genes in Six Citrus Species and Their Expression Analysis in Sweet Orange (Citrus sinensis). Front Genet 2022; 13:848141. [PMID: 35495138 PMCID: PMC9039136 DOI: 10.3389/fgene.2022.848141] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Accepted: 03/15/2022] [Indexed: 12/14/2022] Open
Abstract
Citrus fruit contains rich nutrients which is edible and of officinal value. Citrus flavanones are widely used in the treatment of cardiovascular and other diseases, and they are a foundational material of Chinese medicine. The chalcone-flavanone isomerase (CHI) plays a key role in flavanone synthesis. Therefore, we comprehensively analyzed CHI genes in Citrus species. Here, thirty CHI genes were identified for the first time in six Citrus species, which were divided into CHI and FAP groups. Evolutionary analysis showed that CHI gene members were highly conserved and were an ancient family. All CsCHI genes showed the highest expression level after the second physiological fruit-falling period in C. sinensis. CsCHI1 and CsCHI3 were highly expressed at 50 days after the flowering (DAF) stage in albedo. The expression of CsFAP2 and CsCHI3 genes at the 50 DAF stage was 16.5 and 24.3 times higher than that at the 220 DAF stage, respectively. The expression of CsCHI1, CsCHI3, and CsFAP2 genes in the peel was higher than that in the pulp, especially in common sweet orange. The CsCHI3 gene maintained a high expression level in the epicarp and juice sac at all periods. The members of CHIs interacted with chalcone synthase (CHS), flavonol synthase/flavanone 3-hydroxylase (FLS) and naringenin, and 2-oxoglutarate 3-dioxygenase (F3H) to form heterodimers, which might together play a regulatory role and participate in the flavonoid pathway. This study will provide the basis for the selection of flavonoids in plant tissues and periods and fundamental information for further functional studies.
Collapse
Affiliation(s)
- Quan Wan
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, China
- Affiliated Hospital of Inner Mongolia Minzu University, Inner Mongolia Minzu University, Tongliao, China
- *Correspondence: Quan Wan, ; Jinlian Zhang,
| | - Tingting Bai
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, China
| | - Minmin Liu
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, China
| | - Ying Liu
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, China
| | - Yating Xie
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, China
| | - Tao Zhang
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, China
| | - Min Huang
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, China
| | - Jinlian Zhang
- School of Pharmacy, Jiangxi University of Chinese Medicine, Nanchang, China
- *Correspondence: Quan Wan, ; Jinlian Zhang,
| |
Collapse
|
64
|
Fitch G, Figueroa LL, Koch H, Stevenson PC, Adler LS. Understanding effects of floral products on bee parasites: Mechanisms, synergism, and ecological complexity. Int J Parasitol Parasites Wildl 2022; 17:244-256. [PMID: 35299588 PMCID: PMC8920997 DOI: 10.1016/j.ijppaw.2022.02.011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Revised: 02/24/2022] [Accepted: 02/25/2022] [Indexed: 12/27/2022]
Abstract
Floral nectar and pollen commonly contain diverse secondary metabolites. While these compounds are classically thought to play a role in plant defense, recent research indicates that they may also reduce disease in pollinators. Given that parasites have been implicated in ongoing bee declines, this discovery has spurred interest in the potential for 'medicinal' floral products to aid in pollinator conservation efforts. We review the evidence for antiparasitic effects of floral products on bee diseases, emphasizing the importance of investigating the mechanism underlying antiparasitic effects, including direct or host-mediated effects. We discuss the high specificity of antiparasitic effects of even very similar compounds, and highlight the need to consider how nonadditive effects of multiple compounds, and the post-ingestion transformation of metabolites, mediate the disease-reducing capacity of floral products. While the bulk of research on antiparasitic effects of floral products on bee parasites has been conducted in the lab, we review evidence for the impact of such effects in the field, and highlight areas for future research at the floral product-bee disease interface. Such research has great potential both to enhance our understanding of the role of parasites in shaping plant-bee interactions, and the role of plants in determining bee-parasite dynamics. This understanding may in turn reveal new avenues for pollinator conservation.
Collapse
Affiliation(s)
- Gordon Fitch
- Department of Biology, University of Massachusetts Amherst, Amherst, MA, 01003, USA
- Corresponding author.
| | - Laura L. Figueroa
- Department of Entomology, Cornell University, Ithaca, NY, 14853, USA
- Department of Environmental Conservation, University of Massachusetts Amherst, Amherst, MA, 01003, USA
| | - Hauke Koch
- Royal Botanic Gardens, Kew Green, Kew, Richmond, Surrey, TW9 3AE, UK
| | - Philip C. Stevenson
- Royal Botanic Gardens, Kew Green, Kew, Richmond, Surrey, TW9 3AE, UK
- Natural Resources Institute, University of Greenwich, Kent, ME4 4TB, UK
| | - Lynn S. Adler
- Department of Biology, University of Massachusetts Amherst, Amherst, MA, 01003, USA
| |
Collapse
|
65
|
López-Goldar X, Hastings A, Züst T, Agrawal A. Evidence for tissue-specific defense-offense interactions between milkweed and its community of specialized herbivores. Mol Ecol 2022; 31:3254-3265. [PMID: 35363921 DOI: 10.1111/mec.16450] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Revised: 03/08/2022] [Accepted: 03/28/2022] [Indexed: 11/28/2022]
Abstract
Coevolution between plants and herbivores often involves escalation of defense-offense strategies, but attack by multiple herbivores may obscure the match of plant defense to any one attacker. As herbivores often specialize on distinct plant parts, we hypothesized that defense-offense interactions in coevolved systems may become physiologically and evolutionarily compartmentalized between plant tissues. We report that roots, leaves, flower buds and seeds of the tropical milkweed (Asclepias curassavica) show increasing concentrations of cardenolide toxins acropetally, with latex showing the highest concentration. In vitro assays of the physiological target of cardenolides, the Na+ /K+ -ATPase (hereafter 'sodium pump'), of three specialized milkweed herbivores (root-feeding Tetraopes tetrophthalmus, leaf-feeding Danaus plexippus, and seed-feeding Oncopeltus fasciatus) show that they are proportionally tolerant to the cardenolide concentrations of the tissues they eat. Indeed, molecular substitutions in the insects' sodium pumps predicted their tolerance to toxins from their target tissues. Nonetheless, the relative inhibition of the sodium pumps of these specialists by the concentration vs. composition (inhibition controlled for concentration, what we term 'potency') of cardenolides from their target vs. non-target plant tissues revealed different degrees of insect adaptation to tissue-specific toxins. In addition, a trade-off between toxin concentration and potency emerged across plant tissues, potentially reflecting coevolutionary history or plant physiological constraints. Our findings suggest that tissue-specific coevolutionary dynamics may be proceeding between the plant and its specialized community of herbivores. This novel finding may be common in nature, contributing to ways in which coevolution proceeds in multi-species communities.
Collapse
Affiliation(s)
- Xosé López-Goldar
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA
| | - Amy Hastings
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA
| | - Tobias Züst
- Department of Systematic and Evolutionary Botany, University of Zürich, Switzerland
| | - Anurag Agrawal
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA.,Department of Entomology, Cornell University, Ithaca, NY, USA
| |
Collapse
|
66
|
Who Cares More about Chemical Defenses - the Macroalgal Producer or Its Main Grazer? J Chem Ecol 2022; 48:416-430. [PMID: 35353298 DOI: 10.1007/s10886-022-01358-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Revised: 02/26/2022] [Accepted: 03/06/2022] [Indexed: 10/18/2022]
Abstract
The consequences of defensive secondary metabolite concentrations and interspecific metabolite diversity on grazers have been extensively investigated. Grazers which prefer certain food sources are often found in high abundance on their host and as a result, understanding the interaction between the two is important to understand community structure. The effects of intraspecific diversity, however, on the grazer are not well understood. Within a single, localized geographic area, the Antarctic red seaweed Plocamium sp. produces 15 quantitatively and qualitatively distinct mixtures of halogenated monoterpenes ("chemogroups"). Plocamium sp. is strongly chemically defended which makes it unpalatable to most grazers, except for the amphipod Paradexamine fissicauda. We investigated differences in the feeding and growth rates of both Plocamium sp. and P. fissicauda, in addition to grazer reproductive output, in relation to different chemogroups. Some chemogroups significantly reduced the grazer's feeding rate compared to other chemogroups and a non-chemically defended control. The growth rate of Plocamium sp. did not differ between chemogroups and the growth rates of P. fissicauda also did not show clear patterns between the feeding treatments. Reproductive output, however, was significantly reduced for amphipods on a diet of algae possessing one of the chemogroups when compared to a non-chemically defended control. Hence, intraspecific chemodiversity benefits the producer since certain chemogroups are consumed at a slower rate and the grazer's reproductive output is reduced. Nevertheless, the benefits outweigh the costs to the grazer as it can still feed on its host and closely associates with the alga for protection from predation.
Collapse
|
67
|
Bolin LG, Lau JA. Linking genetic diversity and species diversity through plant–soil feedback. Ecology 2022; 103:e3692. [DOI: 10.1002/ecy.3692] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Accepted: 01/14/2022] [Indexed: 11/06/2022]
Affiliation(s)
- Lana G. Bolin
- Department of Biology Indiana University Jordan Hall, 1001 E. 3rd St Bloomington IN USA
| | - Jennifer A. Lau
- Department of Biology Indiana University Jordan Hall, 1001 E. 3rd St Bloomington IN USA
- Environmental Resilience Institute Indiana University Bloomington IN USA
| |
Collapse
|
68
|
Xu L, Cao M, Wang Q, Xu J, Liu C, Ullah N, Li J, Hou Z, Liang Z, Zhou W, Liu A. Insights into the plateau adaptation of Salvia castanea by comparative genomic and WGCNA analyses. J Adv Res 2022; 42:221-235. [PMID: 36089521 PMCID: PMC9788944 DOI: 10.1016/j.jare.2022.02.004] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 01/30/2022] [Accepted: 02/10/2022] [Indexed: 12/27/2022] Open
Abstract
INTRODUCTION Salvia castanea, a wild plant species is adapted to extreme Qinghai-Tibetan plateau (QTP) environments. It is also used for medicinal purposes due to high ingredient of tanshinone IIA (T-IIA). Despite its importance to Chinese medicinal industry, the mechanisms associated with secondary metabolites accumulation (i.e. T-IIA and rosmarinic acid (RA)) in this species have not been characterized. Also, the role of special underground tissues in QTP adaptation of S. castanea is still unknown. OBJECTIVES We explored the phenomenon of periderm-like structure in underground stem center of S. castanea with an aim to unravel the molecular evolutionary mechanisms of QTP adaptation in this species. METHODS Morphologic observation and full-length transcriptome of S. castanea plants were conducted. Comparative genomic analyses of S. castanea with other 14 representative species were used to reveal its phylogenetic position and molecular evolutionary mechanisms. RNA-seq and WGCNA analyses were applied to understand the mechanisms of high accumulations of T-IIA and RA in S. castanea tissues. RESULTS Based on anatomical observations, we proposed a "trunk-branches" developmental model to explain periderm-like structure in the center of underground stem of S. castanea. Our study suggested that S. castanea branched off from cultivated Danshen around 16 million years ago. During the evolutionary process, significantly expanded orthologous gene groups, 24 species-specific and 64 positively selected genes contributed to morphogenesis and QTP adaptation in S. castanea. RNA-seq and WGCNA analyses unraveled underlying mechanisms of high accumulations of T-IIA and RA in S. castanea and identified NAC29 and TGA22 as key transcription factors. CONCLUSION We proposed a "trunk-branches" developmental model for the underground stem in S. castanea. Adaptations to extreme QTP environment in S. castanea are associated with accumulations of high secondary metabolites in this species.
Collapse
Affiliation(s)
- Ling Xu
- Key Laboratory of Plant Secondary Metabolism and Regulation of Zhejiang Province, College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou 310018, China
| | - Mengting Cao
- Key Laboratory of Plant Secondary Metabolism and Regulation of Zhejiang Province, College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou 310018, China
| | - Qichao Wang
- Key Laboratory of Plant Secondary Metabolism and Regulation of Zhejiang Province, College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou 310018, China
| | - Jiahao Xu
- Key Laboratory of Plant Secondary Metabolism and Regulation of Zhejiang Province, College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou 310018, China
| | - Chenglin Liu
- Key Laboratory of Breast Cancer in Shanghai, Department of Breast Surgery, Precision Cancer Medicine Center, Fudan University Shanghai Cancer Center, Shanghai 200032, China
| | - Najeeb Ullah
- Queensland Alliance for Agriculture and Food Innovation, Centre for Plant Science, the University of Queensland, Toowoomba, QLD 4350, Australia,Faculty of Science, Universiti Brunei Darussalam, Jalan Tungku Link Gadong BE1410, Brunei Darussalam
| | - Juanjuan Li
- Institute of Crop Science, Ministry of Agriculture and Rural Affairs Key Laboratory of Spectroscopy Sensing, Zhejiang University, Hangzhou 310058, China
| | - Zhuoni Hou
- Key Laboratory of Plant Secondary Metabolism and Regulation of Zhejiang Province, College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou 310018, China
| | - Zongsuo Liang
- Key Laboratory of Plant Secondary Metabolism and Regulation of Zhejiang Province, College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou 310018, China,Corresponding authors.
| | - Weijun Zhou
- Zhejiang Key Laboratory of Crop Germplasm, Institute of Crop Science, Zhejiang University, Hangzhou 310058, China,Corresponding authors.
| | - Ake Liu
- Department of Life Sciences, Changzhi University, Changzhi 046011, China,Corresponding authors.
| |
Collapse
|
69
|
Raudone L, Radušiene J, Seyis F, Yayla F, Vilkickyte G, Marksa M, Ivanauskas L, Cırak C. Distribution of Phenolic Compounds and Antioxidant Activity in Plant Parts and Populations of Seven Underutilized Wild Achillea Species. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11030447. [PMID: 35161428 PMCID: PMC8839896 DOI: 10.3390/plants11030447] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Accepted: 02/02/2022] [Indexed: 06/01/2023]
Abstract
Evaluation of phytochemical composition of underutilized Achillea species provides the primary selection of germplasms with the desired quality of raw material for their further applications. The aim of the study was to evaluate the comprehensive distribution patterns of phenolic compounds in seven wild Achillea spp. and their plant parts, and to assess their antioxidant activity. Plant material was collected from different sites in Turkey. A complex of hydroxycinnamic acids, flavonols and flavones was identified and quantified in methanolic extracts using HPLC-PDA method. Antioxidant activity was assessed by radical scavenging assay. The results showed that qualitative and qualitative profiles of caffeoylquinic acids and flavonoids were species-specific, explaining the characteristic patterns of their variation in the corresponding species and plant parts. The highest total amount of caffeoylquinic acids was detected in A. setacea. A. arabica exposed the highest accumulation of mono-caffeoylquinic acids and flavonoids with the greatest levels of quercetin and luteolin derivatives and the flavonol santin. Santin was detected in all plant parts of A. cappadocica, A. setacea, A. santolinoides subsp. wilhelmsii, and A. arabica. A notable antiradical capacity was confirmed in A. arabica, A. setacea and A. cappadocica plant extracts. The leaves of all studied species were found to have priority over inflorescences and stems in terms of radical scavenging activity. The new data complemented the information that may be relevant for the continuation of chemophenetic studies in the heterogeneous genus Achillea.
Collapse
Affiliation(s)
- Lina Raudone
- Department of Pharmacognosy, Lithuanian University of Health Sciences, Sukileliu Av. 13, 50162 Kaunas, Lithuania
- Laboratory of Biopharmaceutical Research, Institute of Pharmaceutical Technologies, Lithuanian University of Health Sciences, Sukileliu Av. 13, 50162 Kaunas, Lithuania;
| | - Jolita Radušiene
- Institute of Botany, Nature Research Center, Akademijos Str. 2, 08412 Vilnius, Lithuania;
| | - Fatih Seyis
- Department of Field Crops, Faculty of Agriculture and Natural Sciences, Recep Tayyip Erdoğan University, 53100 Rize, Turkey;
| | - Fatih Yayla
- Department of Biology, Faculty of Arts and Sciences, Gaziantep University, 27310 Gaziantep, Turkey;
| | - Gabrielė Vilkickyte
- Laboratory of Biopharmaceutical Research, Institute of Pharmaceutical Technologies, Lithuanian University of Health Sciences, Sukileliu Av. 13, 50162 Kaunas, Lithuania;
| | - Mindaugas Marksa
- Department of Analytical and Toxicological Chemistry, Lithuanian University of Health Sciences, Sukileliu Av. 13, 50162 Kaunas, Lithuania; (M.M.); (L.I.)
| | - Liudas Ivanauskas
- Department of Analytical and Toxicological Chemistry, Lithuanian University of Health Sciences, Sukileliu Av. 13, 50162 Kaunas, Lithuania; (M.M.); (L.I.)
| | - Cüneyt Cırak
- Bafra Vocational School, Ondokuz Mayis University, Atacum, 55200 Samsun, Turkey;
| |
Collapse
|
70
|
Davidovich-Rikanati R, Bar E, Hivert G, Huang XQ, Hoppen-Tonial C, Khankin V, Rand K, Abofreih A, Muhlemann JK, Marchese JA, Shotland Y, Dudareva N, Inbar M, Lewinsohn E. Transcriptional up-regulation of host-specific terpene metabolism in aphid-induced galls of Pistacia palaestina. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:555-570. [PMID: 34129033 DOI: 10.1093/jxb/erab289] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Accepted: 06/11/2021] [Indexed: 06/12/2023]
Abstract
Galling insects gain food and shelter by inducing specialized anatomical structures in their plant hosts. Such galls often accumulate plant defensive metabolites protecting the inhabiting insects from predation. We previously found that, despite a marked natural chemopolymorphism in natural populations of Pistacia palaestina, the monoterpene content in Baizongia pistaciae-induced galls is substantially higher than in leaves of their hosts. Here we show a general up-regulation of key structural genes in both the plastidial and cytosolic terpene biosynthetic pathways in galls as compared with non-colonized leaves. Novel prenyltransferases and terpene synthases were functionally expressed in Escherichia coli to reveal their biochemical function. Individual Pistacia trees exhibiting chemopolymorphism in terpene compositions displayed differential up-regulation of selected terpene synthase genes, and the metabolites generated by their gene products in vitro corresponded to the monoterpenes accumulated by each tree. Our results delineate molecular mechanisms responsible for the formation of enhanced monoterpene in galls and the observed intraspecific monoterpene chemodiversity displayed in P. palaestina. We demonstrate that gall-inhabiting aphids transcriptionally reprogram their host terpene pathways by up-regulating tree-specific genes, boosting the accumulation of plant defensive compounds for the protection of colonizing insects.
Collapse
Affiliation(s)
- Rachel Davidovich-Rikanati
- Institute of Plant Sciences, Newe Ya'ar Research Center, Agricultural Research Organization, The Volcani Center, Ramat Yishay, 30095, Israel
| | - Einat Bar
- Institute of Plant Sciences, Newe Ya'ar Research Center, Agricultural Research Organization, The Volcani Center, Ramat Yishay, 30095, Israel
| | - Gal Hivert
- Institute of Plant Sciences, Newe Ya'ar Research Center, Agricultural Research Organization, The Volcani Center, Ramat Yishay, 30095, Israel
- Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Xing-Qi Huang
- Department of Biochemistry, Purdue University, West Lafayette, IN 47907-1165, USA
- Purdue Center for Plant Biology, Purdue University, West Lafayette, IN 47907, USA
| | - Carolina Hoppen-Tonial
- Department of Agronomy, Federal University of Technology - Paraná, Pato Branco, 85503-390, Brazil
- Department of Agronomy, Federal Institute of Paraná, Palmas, 85555-000, Brazil
| | - Vered Khankin
- Department of Chemical Engineering, Shamoon College of Engineering, Beer Sheva, 84100, Israel
| | - Karin Rand
- Institute of Plant Sciences, Newe Ya'ar Research Center, Agricultural Research Organization, The Volcani Center, Ramat Yishay, 30095, Israel
- Department of Evolutionary & Environmental Biology, University of Haifa, Mount Carmel, Haifa, 3498838, Israel
| | - Amal Abofreih
- Department of Chemical Engineering, Shamoon College of Engineering, Beer Sheva, 84100, Israel
| | - Joelle K Muhlemann
- Department of Biochemistry, Purdue University, West Lafayette, IN 47907-1165, USA
- The James Hutton Institute, UK
| | - José Abramo Marchese
- Department of Agronomy, Federal University of Technology - Paraná, Pato Branco, 85503-390, Brazil
| | - Yoram Shotland
- Department of Chemical Engineering, Shamoon College of Engineering, Beer Sheva, 84100, Israel
| | - Natalia Dudareva
- Department of Biochemistry, Purdue University, West Lafayette, IN 47907-1165, USA
- Purdue Center for Plant Biology, Purdue University, West Lafayette, IN 47907, USA
| | - Moshe Inbar
- Department of Evolutionary & Environmental Biology, University of Haifa, Mount Carmel, Haifa, 3498838, Israel
| | - Efraim Lewinsohn
- Institute of Plant Sciences, Newe Ya'ar Research Center, Agricultural Research Organization, The Volcani Center, Ramat Yishay, 30095, Israel
- Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| |
Collapse
|
71
|
Chen J, Li N, Chang J, Ren K, Zhou J, Yang G. Taxonomic Structure of Rhizosphere Bacterial Communities and Its Association With the Accumulation of Alkaloidal Metabolites in Sophora flavescens. Front Microbiol 2022; 12:781316. [PMID: 34970241 PMCID: PMC8712762 DOI: 10.3389/fmicb.2021.781316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Accepted: 11/15/2021] [Indexed: 11/13/2022] Open
Abstract
Plant secondary metabolites (SMs) play a crucial role in plant defense against pathogens and adaptation to environmental stresses, some of which are produced from medicinal plants and are the material basis of clinical efficacy and vital indicators for quality evaluation of corresponding medicinal materials. The influence of plant microbiota on plant nutrient uptake, production, and stress tolerance has been revealed, but the associations between plant microbiota and the accumulation of SMs in medicinal plants remain largely unknown. Plant SMs can vary among individuals, which could be partly ascribed to the shift in microbial community associated with the plant host. In the present study, we sampled fine roots and rhizosphere soils of Sophora flavescens grown in four well-separated cities/counties in China and determined the taxonomic composition of rhizosphere bacterial communities using Illumina 16S amplicon sequencing. In addition, the association of the rhizosphere bacterial microbiota with the accumulation of alkaloids in the roots of S. flavescens was analyzed. The results showed that S. flavescens hosted distinct bacterial communities in the rhizosphere across geographic locations and plant ages, also indicating that geographic location was a larger source of variation than plant age. Moreover, redundancy analysis revealed that spatial, climatic (mean annual temperature and precipitation), and edaphic factors (pH and available N and P) were the key drivers that shape the rhizosphere bacterial communities. Furthermore, the results of the Mantel test demonstrated that the rhizosphere bacterial microbiota was remarkably correlated with the contents of oxymatrine, sophoridine, and matrine + oxymatrine in roots. Specific taxa belonging to Actinobacteria and Chloroflexi were identified as potential beneficial bacteria associated with the total accumulation of matrine and oxymatrine by a random forest machine learning algorithm. Finally, the structural equation modeling indicated that the Actinobacteria phylum had a direct effect on the total accumulation of matrine and oxymatrine. The present study addresses the association between the rhizosphere bacterial communities and the accumulation of alkaloids in the medicinal plant S. flavescens. Our findings may provide a basis for the quality improvement and sustainable utilization of this medicinal plant thorough rhizosphere microbiota manipulation.
Collapse
Affiliation(s)
- Jie Chen
- School of Pharmaceutical Science, Shanxi Medical University, Taiyuan, China
| | - Na Li
- School of Pharmaceutical Science, Shanxi Medical University, Taiyuan, China
| | - Jiayu Chang
- School of Pharmaceutical Science, Shanxi Medical University, Taiyuan, China
| | - Kaida Ren
- School of Pharmaceutical Science, Shanxi Medical University, Taiyuan, China
| | - Jiangtao Zhou
- School of Pharmaceutical Science, Shanxi Medical University, Taiyuan, China
| | - Guan'e Yang
- School of Pharmaceutical Science, Shanxi Medical University, Taiyuan, China
| |
Collapse
|
72
|
de Beer D, du Preez B, Joubert E. Development of HPLC method for quantification of phenolic compounds in Cyclopia intermedia (honeybush) herbal tea infusions. J Food Compost Anal 2021. [DOI: 10.1016/j.jfca.2021.104154] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
|
73
|
Ishihara A. Defense mechanisms involving secondary metabolism in the grass family. JOURNAL OF PESTICIDE SCIENCE 2021; 46:382-392. [PMID: 34908899 PMCID: PMC8640679 DOI: 10.1584/jpestics.j21-05] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 08/10/2021] [Indexed: 05/13/2023]
Abstract
Plants synthesize and accumulate a wide variety of compounds called secondary metabolites. Secondary metabolites serve as chemical barriers to protect plants from pathogens and herbivores. Antimicrobial secondary metabolites are accumulated to prevent pathogen infection. These metabolites are classified into phytoalexins (induced in response to pathogen attack) and phytoanticipins (present prior to pathogen infection). The antimicrobial compounds in the grass family (Poaceae) were studied from the viewpoint of evolution. The studies were performed at three hierarchies, families, genera, and species and include the following: 1) the distribution of benzoxazinoids (Bxs) in the grass family, 2) evolutionary replacement of phytoanticipins from Bxs to hydroxycinnamic acid amide dimers in the genus Hordeum, and 3) chemodiversity of flavonoid and diterpenoid phytoalexins in rice. These studies demonstrated dynamic changes in secondary metabolism during evolution, indicating the adaptation of plants to their environment by repeating scrap-and-build cycles.
Collapse
Affiliation(s)
- Atsushi Ishihara
- Department of Agricultural, Life and Environmental Sciences, Faculty of Agriculture, Tottori University, Tottori 680–8553, Japan
- To whom correspondence should be addressed. E-mail:
| |
Collapse
|
74
|
Monzote L, García J, González R, Scotti MT, Setzer WN. Bioactive Essential Oils from Cuban Plants: An Inspiration to Drug Development. PLANTS (BASEL, SWITZERLAND) 2021; 10:plants10112515. [PMID: 34834878 PMCID: PMC8620706 DOI: 10.3390/plants10112515] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2021] [Revised: 11/15/2021] [Accepted: 11/17/2021] [Indexed: 05/07/2023]
Abstract
Aromatic plants and essential oils are important agents as complementary and alternative medicines in many cultures and geographical locations. In this review, a literature search on essential oils from Cuba, their chemical compositions, and their pharmacological properties was carried out. Out of 171 published scientific articles on essential oils of Cuban plants, a total of 31 documents, focused on both chemical composition and pharmacological properties, were considered for this review. In general, an increase in articles published in the last decade was noted, particularly in recognized international journals in English. Myrtaceae and Piperaceae were the most representative families collected in the occidental area of the country. Leaves and aerial parts were predominantly used, while a wide and variable number of components were identified, including terpenes, aliphatic derivatives, sulfur-containing compounds, phenylpropanoids, alkaloids and amine-type compounds. Finally, different biological activities were reported such as antiprotozoal, antibacterial, antifungal, cytotoxic, anthelmintic, larvicidal and insecticidal. In conclusion, we encourage further studies that would promote the use of essential oils from Cuban plants in new pharmaceutical products.
Collapse
Affiliation(s)
- Lianet Monzote
- Department of Parasitology, Center of Research, Diagnostic and Reference, Institute of Tropical Medicine “Pedro Kouri”, Havana 11400, Cuba
- Research Network Natural Products against Neglected Diseases (ResNetNPND), University of Münster, 48149 Münster, Germany;
- Correspondence: (L.M.); (W.N.S.)
| | - Jesús García
- Department of Pharmacy, Faculty of Natural and Exact Sciences, University of Oriente, Santiago de Cuba 90500, Cuba;
| | - Rosalia González
- Toxicology and Biomedicine Centre (TOXIMED), University of Medical Science, Santiago de Cuba 90400, Cuba;
| | - Marcus Tullius Scotti
- Research Network Natural Products against Neglected Diseases (ResNetNPND), University of Münster, 48149 Münster, Germany;
- Post-Graduate Program in Natural and Synthetic Bioactive Products, Federal University of Paraíba, João Pessoa 58051-900, Brazil
| | - William N. Setzer
- Research Network Natural Products against Neglected Diseases (ResNetNPND), University of Münster, 48149 Münster, Germany;
- Department of Chemistry, University of Alabama in Huntsville, Huntsville, AL 35899, USA
- Aromatic Plant Research Center, 230 N 1200 E, Suite 100, Lehi, UT 84043, USA
- Correspondence: (L.M.); (W.N.S.)
| |
Collapse
|
75
|
Hao Y, Kang J, Yang R, Li H, Cui H, Bai H, Tsitsilin A, Li J, Shi L. Multidimensional exploration of essential oils generated via eight oregano cultivars: Compositions, chemodiversities, and antibacterial capacities. Food Chem 2021; 374:131629. [PMID: 34865929 DOI: 10.1016/j.foodchem.2021.131629] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2021] [Revised: 11/08/2021] [Accepted: 11/14/2021] [Indexed: 12/13/2022]
Abstract
Numerous species of Origanum (Lamiaceae) have been widely used as spices to extend the shelf life of foods. Essential oils extracted from this genus have attracted much attention owing to their potential applications as bactericides. Here, we evaluated the chemical compositions of eight oregano essential oils (OEOs) using gas chromatography-mass spectrometry and assessed their antibacterial activities. The chemical compositions of OEOs were affected by the cultivar factor, and seven common compounds, including carvacrol, were identified among eight OEOs. Partial least squares discriminant analysis enabled the distinction of three groups among these OEOs, as characterized by the proportions of carvacrol, thymol, and sesquiterpenes. OEOs effectively inhibited Escherichia coli and Staphylococcus aureus with varying antibacterial activities. Spearman correlation network highlighted core antibacterial contributors in the chemical profiles of OEOs. Our results revealed that the bacteriostatic effects of OEOs could be explained by core compounds and their synergistic effects.
Collapse
Affiliation(s)
- Yuanpeng Hao
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Jiamu Kang
- College of Food Science & Nutritional Engineering, China Agricultural University, Beijing 100083, PR China
| | - Rui Yang
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Hui Li
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, PR China
| | - Hongxia Cui
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, PR China
| | - Hongtong Bai
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, PR China
| | - Andrey Tsitsilin
- All-Russian Research Institute of Medicinal and Aromatic Plants, Moscow 117216, Russia
| | - Jingyi Li
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, PR China.
| | - Lei Shi
- Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, PR China.
| |
Collapse
|
76
|
Seasonal Variation in Host Plant Chemistry Drives Sequestration in a Specialist Caterpillar. J Chem Ecol 2021; 48:79-88. [PMID: 34738204 DOI: 10.1007/s10886-021-01321-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 09/30/2021] [Accepted: 10/10/2021] [Indexed: 10/19/2022]
Abstract
Sequestration of plant secondary metabolites by herbivores can vary across both host plant phenology and herbivore ontogeny, but few studies have explored how they concurrently change in the field. We explored variation in iridoid glycoside concentration and composition in white turtlehead, Chelone glabra, as well as sequestration of iridoid glycosides by its specialist herbivore, the Baltimore checkerspot, Euphydryas phaeton, across the development of both herbivore and host plant. In 2012 we sampled plants to describe seasonal variation in the concentrations of two iridoid glycosides, aucubin and catalpol. In 2017, we sampled both host plants and caterpillars over an entire growing season and explored the relationship between plant chemistry and herbivore sequestration. We also compared iridoid glycoside concentrations of plants with and without herbivory to gain insight into whether levels of secondary compounds were impacted by herbivory. We found that total plant iridoid glycosides varied across the season and that total sequestered iridoid glycosides in caterpillars closely mirrored concentration patterns in plants. However, the magnitude of sequestration by caterpillars ranged from 2 to 20 times the concentrations in host plants, with different proportions of aucubin and catalpol. In addition, plants with herbivory had lower iridoid glycoside concentrations than plants without herbivory, although this difference changed over time. These results suggest that while variation in host plant secondary metabolites may be a dominant factor driving sequestration, other ecological factors may mitigate the relationship between host plant chemistry and herbivore sequestration.
Collapse
|
77
|
Prospect and Challenges for Sustainable Management of Climate Change-Associated Stresses to Soil and Plant Health by Beneficial Rhizobacteria. STRESSES 2021. [DOI: 10.3390/stresses1040015] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Climate change imposes biotic and abiotic stresses on soil and plant health all across the planet. Beneficial rhizobacterial genera, such as Bacillus, Pseudomonas, Paraburkholderia, Rhizobium, Serratia, and others, are gaining popularity due to their ability to provide simultaneous nutrition and protection of plants in adverse climatic conditions. Plant growth-promoting rhizobacteria are known to boost soil and plant health through a variety of direct and indirect mechanisms. However, various issues limit the wider commercialization of bacterial biostimulants, such as variable performance in different environmental conditions, poor shelf-life, application challenges, and our poor understanding on complex mechanisms of their interactions with plants and environment. This study focused on detecting the most recent findings on the improvement of plant and soil health under a stressful environment by the application of beneficial rhizobacteria. For a critical and systematic review story, we conducted a non-exhaustive but rigorous literature survey to assemble the most relevant literature (sorting of a total of 236 out of 300 articles produced from the search). In addition, a critical discussion deciphering the major challenges for the commercialization of these bioagents as biofertilizer, biostimulants, and biopesticides was undertaken to unlock the prospective research avenues and wider application of these natural resources. The advancement of biotechnological tools may help to enhance the sustainable use of bacterial biostimulants in agriculture. The perspective of biostimulants is also systematically evaluated for a better understanding of the molecular crosstalk between plants and beneficial bacteria in the changing climate towards sustainable soil and plant health.
Collapse
|
78
|
Depside and Depsidone Synthesis in Lichenized Fungi Comes into Focus through a Genome-Wide Comparison of the Olivetoric Acid and Physodic Acid Chemotypes of Pseudevernia furfuracea. Biomolecules 2021; 11:biom11101445. [PMID: 34680078 PMCID: PMC8533459 DOI: 10.3390/biom11101445] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Revised: 09/25/2021] [Accepted: 09/28/2021] [Indexed: 12/13/2022] Open
Abstract
Primary biosynthetic enzymes involved in the synthesis of lichen polyphenolic compounds depsides and depsidones are non-reducing polyketide synthases (NR-PKSs), and cytochrome P450s. However, for most depsides and depsidones the corresponding PKSs are unknown. Additionally, in non-lichenized fungi specific fatty acid synthases (FASs) provide starters to the PKSs. Yet, the presence of such FASs in lichenized fungi remains to be investigated. Here we implement comparative genomics and metatranscriptomics to identify the most likely PKS and FASs for olivetoric acid and physodic acid biosynthesis, the primary depside and depsidone defining the two chemotypes of the lichen Pseudevernia furfuracea. We propose that the gene cluster PF33-1_006185, found in both chemotypes, is the most likely candidate for the olivetoric acid and physodic acid biosynthesis. This is the first study to identify the gene cluster and the FAS likely responsible for olivetoric acid and physodic acid biosynthesis in a lichenized fungus. Our findings suggest that gene regulation and other epigenetic factors determine whether the mycobiont produces the depside or the depsidone, providing the first direct indication that chemotype diversity in lichens can arise through regulatory and not only through genetic diversity. Combining these results and existing literature, we propose a detailed scheme for depside/depsidone synthesis.
Collapse
|
79
|
Vilkickyte G, Raudone L. Vaccinium vitis-idaea L. Fruits: Chromatographic Analysis of Seasonal and Geographical Variation in Bioactive Compounds. Foods 2021; 10:foods10102243. [PMID: 34681292 PMCID: PMC8535033 DOI: 10.3390/foods10102243] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Revised: 09/08/2021] [Accepted: 09/19/2021] [Indexed: 12/12/2022] Open
Abstract
Vaccinium vitis-idaea L. (lingonberry) fruits are promising sources of bioactive components with high potential in biomedical applications. Selection in plant breeding, determination of perspective wild clones with optimal growing conditions, and appropriate harvesting time leading to standardized extracts are key factors for achieving phytochemical quality to meet consumer’s needs. In the present study, lingonberry fruits collected along different phenological stages and from different geographical locations were analyzed for the composition of 56 constituents using validated chromatographic techniques. Early stages of lingonberries vegetation were determined as the best stages for obtaining high levels of most phenolics and triterpenoids, while the end of berry vegetation could be chosen as the optimal harvesting time in terms of anthocyanins. Furthermore, intensified continuous biosynthesis of triterpenoids and phenolic acids precursors after vegetation season in the winter sample was observed. Chemodiversity of lingonberries was affected by geographical factors as well as climatic and edaphic conditions, indicating different favorable growing conditions for the accumulation of particular compounds. Present findings could serve for breeders to obtain the highest yields of desirable lingonberry constituents, relevant in food and pharmaceutical industries.
Collapse
Affiliation(s)
- Gabriele Vilkickyte
- Laboratory of Biopharmaceutical Research, Institute of Pharmaceutical Technologies, Lithuanian University of Health Sciences, Sukileliu Avenue 13, LT-50162 Kaunas, Lithuania;
- Correspondence: ; Tel.: +370-622-34977
| | - Lina Raudone
- Laboratory of Biopharmaceutical Research, Institute of Pharmaceutical Technologies, Lithuanian University of Health Sciences, Sukileliu Avenue 13, LT-50162 Kaunas, Lithuania;
- Department of Pharmacognosy, Lithuanian University of Health Sciences, Sukileliu Avenue 13, LT-50162 Kaunas, Lithuania
| |
Collapse
|
80
|
Wright SJ, Goad DM, Gross BL, Muñoz PR, Olsen KM. Genetic trade-offs underlie divergent life history strategies for local adaptation in white clover. Mol Ecol 2021; 31:3742-3760. [PMID: 34532899 DOI: 10.1111/mec.16180] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 08/25/2021] [Accepted: 09/02/2021] [Indexed: 01/26/2023]
Abstract
Local adaptation is common in plants, yet characterization of its underlying genetic basis is rare in herbaceous perennials. Moreover, while many plant species exhibit intraspecific chemical defence polymorphisms, their importance for local adaptation remains poorly understood. We examined the genetic architecture of local adaptation in a perennial, obligately-outcrossing herbaceous legume, white clover (Trifolium repens). This widespread species displays a well-studied chemical defence polymorphism for cyanogenesis (HCN release following tissue damage) and has evolved climate-associated cyanogenesis clines throughout its range. Two biparental F2 mapping populations, derived from three parents collected in environments spanning the U.S. latitudinal species range (Duluth, MN, St. Louis, MO and Gainesville, FL), were grown in triplicate for two years in reciprocal common garden experiments in the parental environments (6,012 total plants). Vegetative growth and reproductive fitness traits displayed trade-offs across reciprocal environments, indicating local adaptation. Genetic mapping of fitness traits revealed a genetic architecture characterized by allelic trade-offs between environments, with 100% and 80% of fitness QTL in the two mapping populations showing significant QTL×E interactions, consistent with antagonistic pleiotropy. Across the genome there were three hotspots of QTL colocalization. Unexpectedly, we found little evidence that the cyanogenesis polymorphism contributes to local adaptation. Instead, divergent life history strategies in reciprocal environments were major fitness determinants: selection favoured early investment in flowering at the cost of multiyear survival in the southernmost site versus delayed flowering and multiyear persistence in the northern environments. Our findings demonstrate that multilocus genetic trade-offs contribute to contrasting life history characteristics that allow for local adaptation in this outcrossing herbaceous perennial.
Collapse
Affiliation(s)
- Sara J Wright
- Department of Biology, Washington University, St. Louis, Missouri, USA
| | - David M Goad
- Department of Biology, Washington University, St. Louis, Missouri, USA
| | - Briana L Gross
- Biology Department, University of Minnesota-Duluth, Duluth, Minnesota, USA
| | - Patricio R Muñoz
- Horticultural Science Department, University of Florida, Gainesville, Florida, USA
| | - Kenneth M Olsen
- Department of Biology, Washington University, St. Louis, Missouri, USA
| |
Collapse
|
81
|
Rao MJ, Wang L. CRISPR/Cas9 technology for improving agronomic traits and future prospective in agriculture. PLANTA 2021; 254:68. [PMID: 34498163 DOI: 10.1007/s00425-021-03716-y] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Accepted: 08/31/2021] [Indexed: 06/13/2023]
Abstract
In this review, we have focused on the CRISPR/Cas9 technology for improving the agronomic traits in plants through point mutations, knockout, and single base editing, and we highlighted the recent progress in plant metabolic engineering. CRISPR/Cas9 technology has immense power to reproduce plants with desired characters and revolutionizing the field of genome engineering by erasing the barriers in targeted genome editing. Agriculture fields are using this advance genome editing tool to get the desired traits in the crops plants such as increase yield, improve product quality attributes, and enhance resistance against biotic and abiotic stresses by identifying and editing genes of interest. This review focuses on CRISPR/Cas-based gene knockout for trait improvement and single base editing to boost yield, quality, stress tolerance, and disease resistance traits in crops. Use of CRISPR/Cas9 system to facilitate crop domestication and hybrid breeding are also touched. We summarize recent developments and up-gradation of delivery mechanism (nanotechnology and virus particle-based delivery system) and progress in multiplex gene editing. We also shed lights in advances and challenges of engineering the important metabolic pathways that contain a variety of dietary metabolites and phytochemicals. In addition, we endorsed substantial technical hurdles and possible ways to overcome the unpredictability of CRISPR/Cas technology for broader application across various crop species. We speculated that by making a strong interconnection among all genomic fields will give a gigantic bunt of knowledge to develop crop expressing desired traits.
Collapse
Affiliation(s)
- Muhammad Junaid Rao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, Guangxi University, 100 Daxue Rd., Nanning, Guangxi, 530004, People's Republic of China
- Guangxi Key Laboratory of Sugarcane Biology, College of Agriculture, Guangxi University, 100 Daxue Rd., 8, Nanning, Guangxi, 530004, People's Republic of China
- Key Laboratory of Horticultural Plant Biology (Ministry of Education), Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (Ministry of Agriculture), Huazhong Agricultural University, Wuhan, Hubei, 430070, People's Republic of China
| | - Lingqiang Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, Guangxi University, 100 Daxue Rd., Nanning, Guangxi, 530004, People's Republic of China.
- Guangxi Key Laboratory of Sugarcane Biology, College of Agriculture, Guangxi University, 100 Daxue Rd., 8, Nanning, Guangxi, 530004, People's Republic of China.
| |
Collapse
|
82
|
Sculfort O, Gérard M, Gekière A, Nonclercq D, Gerbaux P, Duez P, Vanderplanck M. Specialized Metabolites in Floral Resources: Effects and Detection in Buff-Tailed Bumblebees. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.669352] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The selection of appropriate food resources by bees is a critical aspect for the maintenance of their populations, especially in the current context of global change and pollinator decline. Wild bees have a sophisticated ability to forage selectively on specific resources, and can assess the quality of pollen using contact chemosensory perception (taste). While numerous studies have investigated the detection of pollen macronutrients in bees and their impact on bee health and reproductive success, only a few studies have described the gustatory responses of bees toward specialized metabolites. In addition, these studies mostly focused on the response to nectar and neglected pollen, which is the main food resource for both bee imagines and larvae. Whether bees have the ability to detect specialized toxic metabolites in pollen and then rapidly adapt their foraging behavior to avoid them is very little studied. In this study, we tested whether pollen specialized metabolites affect bumblebees at both the micro-colony and individual levels (i.e., bioassays using supplemented pollen), and whether foragers detect these specialized metabolites and potentially display an avoidance behavior (i.e., preference tests using supplemented syrup). Bumblebees were fed with either amygdalin-, scopolamine- or sinigrin-supplemented pollen diets in ratios that mimic 50%, 100%, and 200% of naturally occurring concentrations. We found no effect of these specialized metabolites on resource collection, reproductive success and stress response at the micro-colony level. At the individual level, bumblebees fed on 50%-amygdalin or 50%-scopolamine diets displayed the highest scores for damage to their digestive systems. Interestingly, during the preference tests, the solution with 50%-scopolamine displayed a phagostimulatory activity, whereas solution with 50%-amygdalin had a deterrent effect and could trigger an active avoidance behavior in bumblebees, with a faster proboscis retraction. Our results suggest that regulation of toxin intake is not as well-established and effective as the regulation of nutrient intake in bees. Bees are therefore not equally adapted to all specialized pollen metabolites that they can come into contact with.
Collapse
|
83
|
Evolution-aided engineering of plant specialized metabolism. ABIOTECH 2021; 2:240-263. [PMID: 36303885 PMCID: PMC9590541 DOI: 10.1007/s42994-021-00052-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Accepted: 06/04/2021] [Indexed: 02/07/2023]
Abstract
The evolution of new traits in living organisms occurs via the processes of mutation, recombination, genetic drift, and selection. These processes that have resulted in the immense biological diversity on our planet are also being employed in metabolic engineering to optimize enzymes and pathways, create new-to-nature reactions, and synthesize complex natural products in heterologous systems. In this review, we discuss two evolution-aided strategies for metabolic engineering-directed evolution, which improves upon existing genetic templates using the evolutionary process, and combinatorial pathway reconstruction, which brings together genes evolved in different organisms into a single heterologous host. We discuss the general principles of these strategies, describe the technologies involved and the molecular traits they influence, provide examples of their use, and discuss the roadblocks that need to be addressed for their wider adoption. A better understanding of these strategies can provide an impetus to research on gene function discovery and biochemical evolution, which is foundational for improved metabolic engineering. These evolution-aided approaches thus have a substantial potential for improving our understanding of plant metabolism in general, for enhancing the production of plant metabolites, and in sustainable agriculture.
Collapse
|
84
|
Ullah A, Klutsch JG, Erbilgin N. Production of complementary defense metabolites reflects a co-evolutionary arms race between a host plant and a mutualistic bark beetle-fungal complex. PLANT, CELL & ENVIRONMENT 2021; 44:3064-3077. [PMID: 34008191 DOI: 10.1111/pce.14100] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Accepted: 04/30/2021] [Indexed: 06/12/2023]
Abstract
Intra-specific variation in conifers has been extensively studied with respect to defense against herbivores and pathogens. While studies have shown the ability of individual or specific mixtures of compounds to influence insects and microbes, research testing biologically relevant mixtures of defense compounds reflecting intra-specific variation amongst tree populations to enemy complexes is needed. We characterized the variations in lodgepole pine monoterpenes from a progeny trial in western Canada and grouped trees in four clusters using their monoterpene profiles. We then selected 11 representative families across four clusters and amended their entire monoterpene profiles (with the exception of β-phellandrene) in media to determine how representative families affect the performance of the mountain pine beetle or its fungal symbiont. We placed adult beetles or inoculated fungus on the amended media and measured beetle performance and fungal growth as a proxy to host suitability. We found that different clusters or families differentially influenced beetle or fungal responses. However, monoterpene profiles of trees suitable to the beetle or the fungus were dissimilar. These outcomes reflect a co-evolutionary arms-race between the host and the bark beetle-fungus complex, which has resulted in the production of complementary defense metabolites among different pine populations to enhance tree survival.
Collapse
Affiliation(s)
- Aziz Ullah
- Department of Renewable Resources, University of Alberta, Edmonton, Alberta, Canada
| | - Jennifer G Klutsch
- Department of Renewable Resources, University of Alberta, Edmonton, Alberta, Canada
| | - Nadir Erbilgin
- Department of Renewable Resources, University of Alberta, Edmonton, Alberta, Canada
| |
Collapse
|
85
|
Li C, Pei J, Yan X, Cui X, Tsuruta M, Liu Y, Lian C. A poplar B-box protein PtrBBX23 modulates the accumulation of anthocyanins and proanthocyanidins in response to high light. PLANT, CELL & ENVIRONMENT 2021; 44:3015-3033. [PMID: 34114251 DOI: 10.1111/pce.14127] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Revised: 05/14/2021] [Accepted: 06/01/2021] [Indexed: 05/20/2023]
Abstract
Flavonoids, which modulate plant resistance to various stresses, can be induced by high light. B-box (BBX) transcription factors (TFs) play crucial roles in the transcriptional regulation of flavonoids biosynthesis, but limited information is available on the association of BBX proteins with high light. We present a detailed overview of 45 Populus trichocarpa BBX TFs. Phylogenetic relationships, gene structure, tissue-specific expression patterns and expression profiles were determined under 10 stress or phytohormone treatments to screen candidate BBX proteins associated with the flavonoid pathway. Sixteen candidate genes were identified, of which five were expressed predominantly in young leaves and roots, and BBX23 showed the most distinct response to high light. Overexpression of BBX23 in poplar activated expression of MYB TFs and structural genes in the flavonoid pathway, thereby promoting the accumulation of proanthocyanidins and anthocyanins. CRISPR/Cas9-generated knockout of BBX23 resulted in the opposite trend. Furthermore, the phenotype induced by BBX23 overexpression was enhanced under exposure to high light. BBX23 was capable of binding directly to the promoters of proanthocyanidin- and anthocyanin-specific genes, and its interaction with HY5 enhanced activation activity. We identified novel regulators of flavonoid biosynthesis in poplar, thereby enhancing our general understanding of the transcriptional regulatory mechanisms involved.
Collapse
Affiliation(s)
- Chaofeng Li
- Laboratory of Forest Symbiology, Asian Research Center for Bioresource and Environmental Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Jinli Pei
- Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan, China
| | - Xin Yan
- Plant Biotechnology Research Center, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China
| | - Xin Cui
- College of Grassland Science and Technology, China Agricultural University, Beijing, China
| | - Momi Tsuruta
- Laboratory of Forest Symbiology, Asian Research Center for Bioresource and Environmental Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Ying Liu
- International Joint Laboratory of Forest Symbiology, Fujian Agriculture and Forestry University, Fuzhou, China
| | - Chunlan Lian
- Laboratory of Forest Symbiology, Asian Research Center for Bioresource and Environmental Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| |
Collapse
|
86
|
Jamloki A, Bhattacharyya M, Nautiyal MC, Patni B. Elucidating the relevance of high temperature and elevated CO 2 in plant secondary metabolites (PSMs) production. Heliyon 2021; 7:e07709. [PMID: 34430728 PMCID: PMC8371220 DOI: 10.1016/j.heliyon.2021.e07709] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 06/11/2021] [Accepted: 07/30/2021] [Indexed: 11/15/2022] Open
Abstract
Plant secondary metabolites (PSMs) are plant products that are discontinuously distributed throughout the plant kingdom. These secondary compounds have various chemical groups and are named according to their chemical constituents. For their ability to defend biotic and abiotic stresses they are considered as plants' defensive compounds. These metabolites take part in plant protection from insects, herbivores, and extreme environmental conditions. They are indirectly involved in plants’ growth and development. Secondary metabolites are also used by people in the form of medicines, pharmaceuticals, agrochemicals, colors, fragrances, flavorings, food additives, biopesticides, and drugs development. However, the increase in atmospheric temperature by several anthropogenic activities majorly by the combustion of hydrocarbons is a great issue now. On the other hand, climate change leaves an impact on the quality and quantity of plant secondary metabolites. It is measured that several greenhouse gases (GHGs) are present in the atmosphere, like Chlorofluorocarbons (CFCs), nitrous oxides (NOx), Carbon dioxide (CO2), Methane (CH4) and Ozone (O3), etc. CO2, the major greenhouse gas is essential for photosynthesis. On the other hand, CO2 plays a significant role in the up-regulation of atmospheric temperature. Plants produce various types of primary metabolites such as carbohydrates, proteins, fats, membrane lipids, nucleic acids, and chlorophyll as well as a variety of secondary metabolites from photosynthesis. The high temperature in the atmosphere creates heat stress for plants. As a matter of fact many morphological, physiological and biochemical changes occur in the plant. The high temperature invariably elicits the production of several secondary metabolites within plants. Various strategies have been universally documented to improve the production of PSMs. With this objective, the focus of the current review is to further investigate and discuss futuristic scenarios the effect of elevated CO2 and high temperature on PSMs production which may perhaps beneficial for pharmaceutical industries, biotechnology industries, and also in climate change researches.
Collapse
Affiliation(s)
- Abhishek Jamloki
- High Altitude Plant Physiology Research Centre (HAPPRC), H.N.B. Garhwal University, Post Box: 14, Srinagar Garhwal, 246174, Uttarakhand, India
| | - Malini Bhattacharyya
- High Altitude Plant Physiology Research Centre (HAPPRC), H.N.B. Garhwal University, Post Box: 14, Srinagar Garhwal, 246174, Uttarakhand, India
| | - M C Nautiyal
- High Altitude Plant Physiology Research Centre (HAPPRC), H.N.B. Garhwal University, Post Box: 14, Srinagar Garhwal, 246174, Uttarakhand, India
| | - Babita Patni
- High Altitude Plant Physiology Research Centre (HAPPRC), H.N.B. Garhwal University, Post Box: 14, Srinagar Garhwal, 246174, Uttarakhand, India
| |
Collapse
|
87
|
Shen Y, Liang WJ, Shi YN, Kennelly EJ, Zhao DK. Structural diversity, bioactivities, and biosynthesis of natural diterpenoid alkaloids. Nat Prod Rep 2021; 37:763-796. [PMID: 32129397 DOI: 10.1039/d0np00002g] [Citation(s) in RCA: 74] [Impact Index Per Article: 24.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Covering: 2009 to 2018. Diterpenoid alkaloids, originating from the amination of natural tetracyclic diterpenes, are a diverse class of compounds having complex structural features with many stereocenters. The important pharmacological activities and structural complexity of the diterpenoid alkaloids have long interested scientists due to their medicinal uses, infamous toxicity, and unique biosynthesis. Since 2009, 373 diterpenoid alkaloids, assigned to 46 skeletons, have been isolated and identified from plants mostly in the Ranunculaceae family. The names, classes, molecular weight, molecular formula, NMR data, and plant sources of these diterpene alkaloids are collated here. This review will be a detailed update of the naturally occurring diterpene alkaloids reported from the plant kingdom from 2009-2018, providing an in-depth discussion of their diversity, biological activities, pharmacokinetics, toxicity, application, evolution, and biosynthesis.
Collapse
Affiliation(s)
- Yong Shen
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming, 650201, P. R. China and Biocontrol Engineering Research Center of Plant Disease and Pest, Yunnan University, Kunming, 650504, P. R. China. and Biocontrol Engineering Research Center of Crop Disease and Pest, Yunnan University, Kunming, 650504, P. R. China and School of Life Science, Yunnan University, Kunming, 650504, P. R. China and Kunming Kangren Biotechnology Co., Ltd., Kunming, 650203, P. R. China and Research & Development Center for Functional Products, Yunnan Agricultural University, Kunming, 650201, P. R. China
| | - Wen-Juan Liang
- College of Food Science and Technology, Yunnan Agricultural University, Kunming, 650201, P. R. China
| | - Ya-Na Shi
- College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming, 650201, P. R. China and Institute of Medicinal Plants, Yunnan Academy of Agricultural Sciences, Kunming, 650000, P. R. China
| | - Edward J Kennelly
- Department of Biological Sciences, Lehman College, City University of New York, Bronx, New York, 10468, USA. and Ph.D. Programs in Biochemistry, Biology, and Chemistry, The Graduate Center, City University of New York, New York, 10016, USA
| | - Da-Ke Zhao
- Biocontrol Engineering Research Center of Plant Disease and Pest, Yunnan University, Kunming, 650504, P. R. China. and Biocontrol Engineering Research Center of Crop Disease and Pest, Yunnan University, Kunming, 650504, P. R. China and School of Life Science, Yunnan University, Kunming, 650504, P. R. China and Kunming Kangren Biotechnology Co., Ltd., Kunming, 650203, P. R. China
| |
Collapse
|
88
|
Živković U, Avramov S, Miljković D, Barišić Klisarić N, Tubić L, Mišić D, Šiler B, Tarasjev A. Genetic and Environmental Factors Jointly Impact Leaf Phenolic Profiles of Iris variegata L. PLANTS 2021; 10:plants10081599. [PMID: 34451644 PMCID: PMC8401273 DOI: 10.3390/plants10081599] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 07/26/2021] [Accepted: 07/29/2021] [Indexed: 11/20/2022]
Abstract
A plant’s main mechanism to diminish the effects caused by high free radical levels generated during high irradiance is the synthesis of various secondary metabolites. In addition to interspecies differences, their concentrations may be influenced by genetic, ontogenic, morphogenetic or environmental factors. We investigated the influence of genetic (genotypes from different natural habitats) and environmental (contrasting light regimes as well as successive parts of the vegetation period) variability on the accumulation of 10 selected phenolic compounds (phenolic acids, flavonoids, and xanthones) in Iris variegata genotypes. Genotypes originated from either sun-exposed or shaded natural habitats were transplanted to two experimental light treatments (high light intensity with a higher R/FR ratio and low light intensity with a lower R/FR ratio). Significant impacts of both genetic and environmental seasonal variability (spring, summer and fall during the vegetation period) on phenolic compound profiles were detected. Their highest amounts were detected in spring. The magnitude of difference between light treatments (high vs. low light intensity) and the direction of this change varied depending on the secondary compound class. Phenotypic correlations among the 10 analyzed secondary metabolites differed across the experimental light treatments and their number decreased from spring to fall.
Collapse
Affiliation(s)
- Uroš Živković
- Department of Evolutionary Biology, Institute for Biological Research “Siniša Stanković”, National Institute of Republic of Serbia, University of Belgrade, Bulevar Despota Stefana 142, 11060 Belgrade, Serbia; (S.A.); (D.M.); (N.B.K.); (A.T.)
- Correspondence: ; Tel.: +381-11-2078376
| | - Stevan Avramov
- Department of Evolutionary Biology, Institute for Biological Research “Siniša Stanković”, National Institute of Republic of Serbia, University of Belgrade, Bulevar Despota Stefana 142, 11060 Belgrade, Serbia; (S.A.); (D.M.); (N.B.K.); (A.T.)
| | - Danijela Miljković
- Department of Evolutionary Biology, Institute for Biological Research “Siniša Stanković”, National Institute of Republic of Serbia, University of Belgrade, Bulevar Despota Stefana 142, 11060 Belgrade, Serbia; (S.A.); (D.M.); (N.B.K.); (A.T.)
| | - Nataša Barišić Klisarić
- Department of Evolutionary Biology, Institute for Biological Research “Siniša Stanković”, National Institute of Republic of Serbia, University of Belgrade, Bulevar Despota Stefana 142, 11060 Belgrade, Serbia; (S.A.); (D.M.); (N.B.K.); (A.T.)
| | - Ljiljana Tubić
- Department of Plant Physiology, Institute for Biological Research “Siniša Stanković”, National Institute of Republic of Serbia, University of Belgrade, Bulevar Despota Stefana 142, 11060 Belgrade, Serbia; (L.T.); (D.M.); (B.Š.)
| | - Danijela Mišić
- Department of Plant Physiology, Institute for Biological Research “Siniša Stanković”, National Institute of Republic of Serbia, University of Belgrade, Bulevar Despota Stefana 142, 11060 Belgrade, Serbia; (L.T.); (D.M.); (B.Š.)
| | - Branislav Šiler
- Department of Plant Physiology, Institute for Biological Research “Siniša Stanković”, National Institute of Republic of Serbia, University of Belgrade, Bulevar Despota Stefana 142, 11060 Belgrade, Serbia; (L.T.); (D.M.); (B.Š.)
| | - Aleksej Tarasjev
- Department of Evolutionary Biology, Institute for Biological Research “Siniša Stanković”, National Institute of Republic of Serbia, University of Belgrade, Bulevar Despota Stefana 142, 11060 Belgrade, Serbia; (S.A.); (D.M.); (N.B.K.); (A.T.)
| |
Collapse
|
89
|
Intra-Individual and Intraspecific Terpenoid Diversity in Erodium cicutarium. PLANTS 2021; 10:plants10081574. [PMID: 34451618 PMCID: PMC8398229 DOI: 10.3390/plants10081574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2021] [Revised: 07/25/2021] [Accepted: 07/26/2021] [Indexed: 11/17/2022]
Abstract
The chemodiversity between and within individuals of several plant species is remarkable and shaped by the local habitat environment and the genetic background. The forb Erodium cicutarium (Geraniaceae) is globally distributed and partly invasive. This paper hypothesizes a high intra-specific and inter-individual chemical diversity in this species and investigates this by comparing the concentration and diversity of terpenoid compounds in different plant parts, i.e., leaves, blossoms and fruits. Plants were grown from seeds, originating from native range Bavaria (BY), Germany, and invaded range California (CA), USA, populations. In total, 20 different terpenoids were found, which occurred in distinct combinations and the patterns clustered into groups of distinct chemotypes for all plant parts. Several of the chemotypes were specific to plants of one region. The terpenoid compositions of different plant parts within individuals were highly correlated. Chemodiversity was higher in reproductive plant parts compared to the leaves, and higher in plants from BY compared to CA. This study highlights the intra-specific and inter-individual chemodiversity in E. cicutarium, linked to its geographical origin, which may facilitate its invasion success but also calls for further investigation of the role of chemodiversity in invasive plants on interactions with the environment.
Collapse
|
90
|
Chalvin C, Drevensek S, Chollet C, Gilard F, Šolić EM, Dron M, Bendahmane A, Boualem A, Cornille A. Study of the genetic and phenotypic variation among wild and cultivated clary sages provides interesting avenues for breeding programs of a perfume, medicinal and aromatic plant. PLoS One 2021; 16:e0248954. [PMID: 34288908 PMCID: PMC8294528 DOI: 10.1371/journal.pone.0248954] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2020] [Accepted: 03/09/2021] [Indexed: 11/18/2022] Open
Abstract
A road-map of the genetic and phenotypic diversities in both crops and their wild related species can help identifying valuable genetic resources for further crop breeding. The clary sage (Salvia sclarea L.), a perfume, medicinal and aromatic plant, is used for sclareol production and ornamental purposes. Despite its wide use in the field of cosmetics, the phenotypic and genetic diversity of wild and cultivated clary sages remains to be explored. We characterized the genetic and phenotypic variation of a collection of six wild S. sclarea populations from Croatia, sampled along an altitudinal gradient, and, of populations of three S. sclarea cultivars. We showed low level of genetic diversity for the two S. sclarea traditional cultivars used for essential oil production and for ornamental purposes, respectively. In contrast, a recent cultivar resulting from new breeding methods, which involve hybridizations among several genotypes rather than traditional recurrent selection and self-crosses over time, showed high genetic diversity. We also observed a marked phenotypic differentiation for the ornamental clary sage compared with other cultivated and wild clary sages. Instead, the two cultivars used for essential oil production, a traditional and a recent one, respectively, were not phenotypically differentiated from the wild Croatian populations. Our results also featured some wild populations with high sclareol content and early-flowering phenotypes as good candidates for future breeding programs. This study opens up perspectives for basic research aiming at understanding the impact of breeding methods on clary sage evolution, and highlights interesting avenues for clary breeding programs.
Collapse
Affiliation(s)
- Camille Chalvin
- Institute of Plant Sciences Paris‐Saclay (IPS2), UMR 9213/UMR 1403, Université Paris‐Saclay, Orsay, France
| | - Stéphanie Drevensek
- Institute of Plant Sciences Paris‐Saclay (IPS2), UMR 9213/UMR 1403, Université Paris‐Saclay, Orsay, France
| | - Christel Chollet
- Institute of Plant Sciences Paris‐Saclay (IPS2), UMR 9213/UMR 1403, Université Paris‐Saclay, Orsay, France
| | - Françoise Gilard
- Institute of Plant Sciences Paris‐Saclay (IPS2), UMR 9213/UMR 1403, Université Paris‐Saclay, Orsay, France
| | | | - Michel Dron
- Institute of Plant Sciences Paris‐Saclay (IPS2), UMR 9213/UMR 1403, Université Paris‐Saclay, Orsay, France
| | - Abdelhafid Bendahmane
- Institute of Plant Sciences Paris‐Saclay (IPS2), UMR 9213/UMR 1403, Université Paris‐Saclay, Orsay, France
| | - Adnane Boualem
- Institute of Plant Sciences Paris‐Saclay (IPS2), UMR 9213/UMR 1403, Université Paris‐Saclay, Orsay, France
- * E-mail:
| | - Amandine Cornille
- Université Paris-Saclay, INRAE, CNRS, AgroParisTech, GQE - Le Moulon, Gif-sur-Yvette, France
| |
Collapse
|
91
|
Espinosa-García FJ, García-Rodríguez YM, Bravo-Monzón AE, Vega-Peña EV, Delgado-Lamas G. Implications of the foliar phytochemical diversity of the avocado crop Persea americana cv. Hass in its susceptibility to pests and pathogens. PeerJ 2021; 9:e11796. [PMID: 35070514 PMCID: PMC8759378 DOI: 10.7717/peerj.11796] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 06/25/2021] [Indexed: 11/20/2022] Open
Abstract
Phytochemical diversity (PD) can be considered as a defensive trait; it can operate through single plant secondary metabolites or usually as complex mixtures of them. We tested the more diversity-better defense hypothesis correlating the leaf plant secondary metabolites (PSMs) with the incidence of plant enemies on Hass avocado trees. We expected a negative correlation between the occurrence of plant enemies and PD metrics. Also, as intraspecific PSMs polymorphisms in plant populations are common, we studied the incidence of plant enemies on Hass avocado trees representing chemical variants (chemotypes). We expected a differential incidence of plant enemies among trees grouped by their mono and sesquiterpene + phenylpropanoid chemotypes. We analyzed foliar hexane extracts from 236 trees in 17 orchards by gas chromatography and for the incidence of red mite, thrips, whitefly, avocado branch borer, fruit rot, scab, and peduncle collar blight. The predicted negative correlation between the plant enemies’ incidence and the phytochemical metrics did not occur. To determine the relationship between enemy incidence and chemotypes we grouped the trees by cluster analysis using a matrix of PSMs in each tree. Most trees were grouped under four out of 23 chemotypes. Branch borers attacked trees of low-frequency chemotypes more frequently than trees with common chemotypes. The incidence of five plant enemies was different among the predominant chemotypes. The hypothesis of more diversity-better defense was not supported by the correlations between the phytochemical diversity and the incidence of pests and pathogens in Hass avocado orchards. Based on our results, we hypothesize that phytochemical diversity function as a defensive trait relies more on differentiation among individuals in a population than on the sole increase of chemical diversity. Also, the differential incidence of pests and pathogens on trees classified by their foliar chemotypes implies that these susceptibility or resistance markers represent potential useful tools for Hass avocado orchard pest management.
Collapse
Affiliation(s)
- Francisco J. Espinosa-García
- Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México, Morelia, Michoacán, México
| | - Yolanda M. García-Rodríguez
- Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México, Morelia, Michoacán, México
| | - Angel E. Bravo-Monzón
- Escuela Nacional de Estudios Superiores Mérida, Universidad Nacional Autónoma de México, Mérida, Yucatán, México
| | - Ernesto V. Vega-Peña
- Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México, Morelia, Michoacán, México
| | | |
Collapse
|
92
|
Sabo AA, Dudau M, Constantin GL, Pop TC, Geilfus CM, Naccarati A, Dragomir MP. Two Worlds Colliding: The Interplay Between Natural Compounds and Non-Coding Transcripts in Cancer Therapy. Front Pharmacol 2021; 12:652074. [PMID: 34295245 PMCID: PMC8290364 DOI: 10.3389/fphar.2021.652074] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Accepted: 06/07/2021] [Indexed: 12/25/2022] Open
Abstract
Cancer is a devastating disease and has recently become the leading cause of death in western countries, representing an immense public health burden. When it comes to cancer treatment, chemotherapy is one of the main pillars, especially for advanced stage tumors. Over the years, natural compounds have emerged as one of the most valuable resources for new chemotherapies. It is estimated that more than half of the currently used chemotherapeutic agents are derived from natural compounds. Usually, natural compounds are discovered empirically and an important limitation of introducing new anti-cancer natural products is lack of knowledge with regard to their mechanism of action. Recent data has proven that several natural compounds may function via modulating the expression and function of non-coding RNAs (ncRNAs). NcRNAs are a heterogenous class of RNA molecules which are usually not translated into proteins but have an important role in gene expression regulation and are involved in multiple tumorigenic processes, including response/resistance to pharmacotherapy. In this review, we will discuss how natural compounds function via ncRNAs while summarizing the available data regarding their effects on over 15 types of cancer. Moreover, we will critically analyze the current advances and limitations in understanding the way natural compounds exert these health-promoting effects by acting on ncRNAs. Finally, we will propose several hypotheses that may open new avenues and perspectives regarding the interaction between natural compounds and ncRNAs, which could lead to improved natural compound-based therapeutic strategies in cancer.
Collapse
Affiliation(s)
- Alexandru A Sabo
- Pediatrics 2 (General and Special Pediatrics), Klinikum Stuttgart, Olgahospital, Zentrum für Kinder, Jugend- und Frauenmedizin, Stuttgart, Germany
| | - Maria Dudau
- Biochemistry-Proteomics Department, Victor Babes National Institute of Pathology, Bucharest, Romania.,Department of Cellular and Molecular Biology and Histology, Carol Davila University of Medicine and Pharmacy, Bucharest, Romania
| | - George L Constantin
- Division of Soil Science and Site Science, Thaer-Institute of Agricultural and Horticultural Sciences, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Tudor C Pop
- Department of Pediatrics, Marie Curie Emergency Clinical Hospital for Children, Bucharest, Romania
| | - Christoph-M Geilfus
- Division of Controlled Environment Horticulture, Thaer-Institute of Agricultural and Horticultural Sciences, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Alessio Naccarati
- IIGM Italian Institute for Genomic Medicine, Turin, Italy.,Candiolo Cancer Institute, FPO-IRCCS, Turin, Italy
| | - Mihnea P Dragomir
- Department of Surgery, Fundeni Clinical Hospital, Carol Davila University of Medicine and Pharmacy, Bucharest, Romania
| |
Collapse
|
93
|
Li D, Gaquerel E. Next-Generation Mass Spectrometry Metabolomics Revives the Functional Analysis of Plant Metabolic Diversity. ANNUAL REVIEW OF PLANT BIOLOGY 2021; 72:867-891. [PMID: 33781077 DOI: 10.1146/annurev-arplant-071720-114836] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The remarkable diversity of specialized metabolites produced by plants has inspired several decades of research and nucleated a long list of theories to guide empirical ecological studies. However, analytical constraints and the lack of untargeted processing workflows have long precluded comprehensive metabolite profiling and, consequently, the collection of the critical currencies to test theory predictions for the ecological functions of plant metabolic diversity. Developments in mass spectrometry (MS) metabolomics have revolutionized the large-scale inventory and annotation of chemicals from biospecimens. Hence, the next generation of MS metabolomics propelled by new bioinformatics developments provides a long-awaited framework to revisit metabolism-centered ecological questions, much like the advances in next-generation sequencing of the last two decades impacted all research horizons in genomics. Here, we review advances in plant (computational) metabolomics to foster hypothesis formulation from complex metabolome data. Additionally, we reflect on how next-generation metabolomics could reinvigorate the testing of long-standing theories on plant metabolic diversity.
Collapse
Affiliation(s)
- Dapeng Li
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany;
| | - Emmanuel Gaquerel
- Institut de Biologie Moléculaire des Plantes du CNRS, Université de Strasbourg, 67084 Strasbourg, France;
| |
Collapse
|
94
|
Whitehead SR, Schneider GF, Dybzinski R, Nelson AS, Gelambi M, Jos E, Beckman NG. Fruits, frugivores, and the evolution of phytochemical diversity. OIKOS 2021. [DOI: 10.1111/oik.08332] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Susan R. Whitehead
- Dept of Biological Sciences, Virginia Polytechnic Inst. and State Univ. Blacksburg VI USA
| | | | - Ray Dybzinski
- School of Environmental Sustainability, Loyola Univ. Chicago IL USA
| | - Annika S. Nelson
- Dept of Biological Sciences, Virginia Polytechnic Inst. and State Univ. Blacksburg VI USA
| | - Mariana Gelambi
- Dept of Biological Sciences, Virginia Polytechnic Inst. and State Univ. Blacksburg VI USA
| | - Elsa Jos
- Dept of Biology and Ecology Center, Utah State Univ. Logan UT USA
| | | |
Collapse
|
95
|
Opposing Effects of Ceanothus velutinus Phytochemistry on Herbivore Communities at Multiple Scales. Metabolites 2021; 11:metabo11060361. [PMID: 34200295 PMCID: PMC8227664 DOI: 10.3390/metabo11060361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2021] [Revised: 05/28/2021] [Accepted: 06/02/2021] [Indexed: 11/26/2022] Open
Abstract
Identifying the interactions of functional, biotic, and abiotic factors that define plant–insect communities has long been a goal of community ecologists. Metabolomics approaches facilitate a broader understanding of how phytochemistry mediates the functional interactions among ecological factors. Ceanothus velutinus communities are a relatively unstudied system for investigating chemically mediated interactions. Ceanothus are nitrogen-fixing, fire-adapted plants that establish early post-fire, and produce antimicrobial cyclic peptides, linear peptides, and flavonoids. This study takes a metabolomic approach to understanding how the diversity and variation of C. velutinus phytochemistry influences associated herbivore and parasitoid communities at multiple spatiotemporal scales. Herbivores and foliar samples were collected over three collection times at two sites on the east slope of the Sierra Nevada Mountain range. Foliar tissue was subjected to LC-MS metabolomic analysis, and several novel statistical analyses were applied to summarize, quantify, and annotate variation in the C. velutinus metabolome. We found that phytochemistry played an important role in plant–insect community structure across an elevational gradient. Flavonoids were found to mediate biotic and abiotic influences on herbivores and associated parasitoids, while foliar oligopeptides played a significant positive role in herbivore abundance, even more than abundance of host plants and leaf abundance. The importance of nutritional and defense chemistry in mediating ecological interactions in C. velutinus plant–herbivore communities was established, justifying larger scale studies of this plant system that incorporate other mediators of phytochemistry such as genetic and metageomic contributions.
Collapse
|
96
|
Bellumori M, Innocenti M, Congiu F, Cencetti G, Raio A, Menicucci F, Mulinacci N, Michelozzi M. Within-Plant Variation in Rosmarinus officinalis L. Terpenes and Phenols and Their Antimicrobial Activity against the Rosemary Phytopathogens Alternaria alternata and Pseudomonas viridiflava. Molecules 2021; 26:3425. [PMID: 34198771 PMCID: PMC8201224 DOI: 10.3390/molecules26113425] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Revised: 06/01/2021] [Accepted: 06/03/2021] [Indexed: 11/16/2022] Open
Abstract
This study investigated within-plant variability of the main bioactive compounds in rosemary (Rosmarinus officinalis L.). Volatile terpenes, including the enantiomeric distribution of monoterpenes, and phenols were analyzed in young and mature foliar, cortical and xylem tissues. In addition, antimicrobial activity of rosmarinic acid and selected terpenes was evaluated against two rosemary pathogens, Alternaria alternata and Pseudomonas viridiflava. Data showed that total concentration and relative contents of terpenes changed in relation to tissue source and age. Their highest total concentration was observed in the young leaves, followed by mature leaves, cortical and xylem tissues. Rosmarinic acid and carnosic acid contents did not show significant differences between leaf tissues of different ages, while young and mature samples showed variations in the content of four flavonoids. These results are useful for a more targeted harvesting of rosemary plants, in order to produce high-quality essential oils and phenolic extracts. Microbial tests showed that several terpenes and rosmarinic acid significantly inhibited the growth of typical rosemary pathogens. Overall, results on antimicrobial activity suggest the potential application of these natural compounds as biochemical markers in breeding programs aimed to select new chemotypes less susceptible to pathogen attacks, and as eco-friendly chemical alternatives to synthetic pesticides.
Collapse
Affiliation(s)
- Maria Bellumori
- Department of Neurofarba, Division of Pharmaceutical and Nutraceutical Sciences, University of Florence, Via U. Schiff 6, Sesto Fiorentino, 50019 Florence, Italy; (M.B.); (M.I.); (F.C.)
| | - Marzia Innocenti
- Department of Neurofarba, Division of Pharmaceutical and Nutraceutical Sciences, University of Florence, Via U. Schiff 6, Sesto Fiorentino, 50019 Florence, Italy; (M.B.); (M.I.); (F.C.)
| | - Federica Congiu
- Department of Neurofarba, Division of Pharmaceutical and Nutraceutical Sciences, University of Florence, Via U. Schiff 6, Sesto Fiorentino, 50019 Florence, Italy; (M.B.); (M.I.); (F.C.)
| | - Gabriele Cencetti
- Institute of Biosciences and Bioresources, National Research Council of Italy (CNR), Via Madonna del Piano 10, Sesto Fiorentino, 50019 Florence, Italy; (G.C.); (M.M.)
| | - Aida Raio
- Institute for Sustainable Plant Protection, National Research Council of Italy (CNR), Via Madonna del Piano 10, Sesto Fiorentino, 50019 Florence, Italy;
| | - Felicia Menicucci
- Institute for the Chemistry of OrganoMetallic Compounds, National Research Council of Italy (CNR), Via Madonna del Piano 10, Sesto Fiorentino, 50019 Florence, Italy;
| | - Nadia Mulinacci
- Department of Neurofarba, Division of Pharmaceutical and Nutraceutical Sciences, University of Florence, Via U. Schiff 6, Sesto Fiorentino, 50019 Florence, Italy; (M.B.); (M.I.); (F.C.)
| | - Marco Michelozzi
- Institute of Biosciences and Bioresources, National Research Council of Italy (CNR), Via Madonna del Piano 10, Sesto Fiorentino, 50019 Florence, Italy; (G.C.); (M.M.)
| |
Collapse
|
97
|
Ganteaume A, Romero B, Fernandez C, Ormeño E, Lecareux C. Volatile and semi-volatile terpenes impact leaf flammability: differences according to the level of terpene identification. CHEMOECOLOGY 2021. [DOI: 10.1007/s00049-021-00349-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
98
|
Barny LA, Tasca JA, Sanchez HA, Smith CR, Koptur S, Livshultz T, Minbiole KPC. Chemotaxonomic investigation of Apocynaceae for retronecine-type pyrrolizidine alkaloids using HPLC-MS/MS. PHYTOCHEMISTRY 2021; 185:112662. [PMID: 33774572 DOI: 10.1016/j.phytochem.2021.112662] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2020] [Revised: 01/03/2021] [Accepted: 01/06/2021] [Indexed: 06/12/2023]
Abstract
Apocynaceae are well known for diverse specialized metabolites that are distributed in a phylogenetically informative manner. Pyrrolizidine alkaloids (PAs) have been reported sporadically in one lineage in the family, the APSA clade, but few species have been studied to date. We conducted the first systematic survey of Apocynaceae for retronecine-type PAs, sampling leaves from 231 species from 13 of 16 major lineages within the APSA clade using HPLC-MS/MS. We also followed up preliminary evidence for infra-specific variation of PA detectability in Echites umbellatus Jacq. Four precursor ion scans (PREC) were developed for a high-throughput survey for chemicals containing a structural moiety common to many PAs, the retronecine core. We identified with high confidence PAs in 7 of 8 sampled genera of tribe Echiteae, but not in samples from the closely related Odontadenieae and Mesechiteae, confirming the utility of PAs as a taxonomic character in tribal delimitation. Occurrence of PAs in Malouetieae is reported with moderate confidence in Galactophora schomburgkiana Woodson and Eucorymbia alba Stapf, but currently we have low confidence of their presence in Holarrena pubescens Wall. ex G. Don (the one Malouetieae species where they were previously reported), as well as in Holarrena curtisii King & Gamble and in Kibatalia macrophylla (Pierre ex Hua) Woodson. Candidate PAs in some species of Wrightia R. Br. (Wrightieae) and Marsdenia R. Br. (Marsdenieae) are proposed with moderate confidence, but a subset of the compounds in these taxa presenting with a PA-like fragmentation pattern are more likely to be aminobenzoyl glycosides. Candidate PAs are reported in species with predicted (VXXXD) and unexpected (IXXXN) amino acid motifs in their homospermidine synthase-like genes. Detectability of PAs varies among samples of Echites umbellatus and intra-individual plasticity contributes to this variation. Of toxicological importance, novel potential sources of human exposure to pro-toxic PAs were identified in the medicinal plant, Wrightia tinctoria R.Br., and the food plants, Marsdenia glabra Cost. and Echites panduratus A. DC., warranting immediate further research to elucidate the structures of the candidate PAs identified. Method development and limitations are discussed.
Collapse
Affiliation(s)
- Lea A Barny
- Department of Chemistry, Villanova University, Villanova, PA, 19085, USA.
| | - Julia A Tasca
- Department of Chemistry, Villanova University, Villanova, PA, 19085, USA; Department of Biochemistry and Molecular Biophysics, Perelman School of Medicine at the University of Pennsylvania, 3400 Civic Center Blvd, Philadelphia, PA, 19104, USA.
| | - Hugo A Sanchez
- Department of Chemistry, Villanova University, Villanova, PA, 19085, USA.
| | - Chelsea R Smith
- Department of Biodiversity Earth and Environmental Sciences, Drexel University, PA, 19104, USA.
| | - Suzanne Koptur
- Department of Biology, Florida International University, 11200 SW 8th St, Miami, FL, 33199, USA.
| | - Tatyana Livshultz
- Department of Biodiversity Earth and Environmental Sciences, Drexel University, PA, 19104, USA; Department of Botany, Academy of Natural Sciences of Drexel University, 1900 Benjamin Franklin Parkway, Philadelphia, PA, 19103, USA.
| | - Kevin P C Minbiole
- Department of Chemistry, Villanova University, Villanova, PA, 19085, USA.
| |
Collapse
|
99
|
Factors influencing seed predation in rainforest tree communities of subtropical Australia: Fragmentation, seed size and shifts in vertebrate assemblages. ACTA OECOLOGICA 2021. [DOI: 10.1016/j.actao.2020.103674] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
100
|
Salomé-Abarca LF, Gođevac D, Kim MS, Hwang GS, Park SC, Jang YP, Van Den Hondel CAMJJ, Verpoorte R, Klinkhamer PGL, Choi YH. Latex Metabolome of Euphorbia Species: Geographical and Inter-Species Variation and its Proposed Role in Plant Defense against Herbivores and Pathogens. J Chem Ecol 2021; 47:564-576. [PMID: 33881708 PMCID: PMC8217033 DOI: 10.1007/s10886-021-01274-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2020] [Revised: 03/01/2021] [Accepted: 04/07/2021] [Indexed: 11/30/2022]
Abstract
Based on the hypothesis that the variation of the metabolomes of latex is a response to selective pressure and should thus be affected differently from other organs, their variation could provide an insight into the defensive chemical selection of plants. Metabolic profiling was used to compare tissues of three Euphorbia species collected in diverse regions. The metabolic variation of latexes was much more limited than that of other organs. In all the species, the levels of polyisoprenes and terpenes were found to be much higher in latexes than in leaves and roots of the corresponding plants. Polyisoprenes were observed to physically delay the contact of pathogens with plant tissues and their growth. A secondary barrier composed of terpenes in latex and in particular, 24-methylenecycloartanol, exhibited antifungal activity. These results added to the well-known role of enzymes also present in latexes, show that these are part of a cooperative defense system comprising biochemical and physical elements.
Collapse
Affiliation(s)
- Luis Francisco Salomé-Abarca
- Natural Products Laboratory, Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands
| | - Dejan Gođevac
- Institute of Chemistry, Technology and Metallurgy, National Institute, University of Belgrade, Studentski trg 12-16, Belgrade, 11000, Serbia
| | - Min Sun Kim
- Food Analysis Center, Korea Food Research Institute, Wanju, Republic of Korea
| | - Geum-Sook Hwang
- Integrated Metabolomics Research Group, Western Seoul Center, Korea Basic Science Institute, Seoul, Republic of Korea
| | - Sang Cheol Park
- College of Pharmacy, Kyung Hee University, 02447, Seoul, Republic of Korea
| | - Young Pyo Jang
- College of Pharmacy, Kyung Hee University, 02447, Seoul, Republic of Korea
| | - Cees A M J J Van Den Hondel
- Department Molecular Microbiology and Biotechnology, Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands
| | - Robert Verpoorte
- Natural Products Laboratory, Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands
| | - Peter G L Klinkhamer
- Plant Ecology and Phytochemistry, Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands
| | - Young Hae Choi
- Natural Products Laboratory, Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands. .,College of Pharmacy, Kyung Hee University, 02447, Seoul, Republic of Korea.
| |
Collapse
|