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Furukawa T, Yoshinari T, Sakuda S. Intracellular superoxide level controlled by manganese superoxide dismutases affects trichothecene production in Fusarium graminearum. FEMS Microbiol Lett 2018; 364:4349741. [PMID: 29029036 DOI: 10.1093/femsle/fnx213] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2017] [Accepted: 10/04/2017] [Indexed: 11/14/2022] Open
Abstract
The intracellular superoxide level is a clue to clarification of the regulatory mechanism for mycotoxin production in Fusarium graminearum. In this study, we focused on two manganese superoxide dismutases (SODs) of the fungus, FgSOD2 and FgSOD3, to investigate the relationship of the superoxide level to trichothecene production. Recombinant FgSOD2 and FgSOD3 showed SOD activity, and they were localized mainly in the mitochondria and cytoplasm, respectively. Trichothecene production and mRNA levels of Tri5 and Tri6, which encode a trichothecene biosynthetic enzyme and a key regulator of trichothecene production, respectively, were greatly reduced in gene-deletion mutants of FgSod2 and FgSod3 (ΔFgSod2 and ΔFgSod3). Significant increases in the cytosolic and mitochondrial superoxide levels were observed in ΔFgSod2 and ΔFgSod3, respectively. These results suggested that the cellular superoxide level affects trichothecene production in F. graminearum.
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Affiliation(s)
- Tomohiro Furukawa
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
| | - Tomoya Yoshinari
- National Institute of Health Sciences, 1-18-1 Kamiyouga, Setagaya-ku, Tokyo 158-0098, Japan
| | - Shohei Sakuda
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
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Inter-genome comparison of the Quorn fungus Fusarium venenatum and the closely related plant infecting pathogen Fusarium graminearum. BMC Genomics 2018; 19:269. [PMID: 29673315 PMCID: PMC5907747 DOI: 10.1186/s12864-018-4612-2] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2017] [Accepted: 03/20/2018] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The soil dwelling saprotrophic non-pathogenic fungus Fusarium venenatum, routinely used in the commercial fermentation industry, is phylogenetically closely related to the globally important cereal and non-cereal infecting pathogen F. graminearum. This study aimed to sequence, assemble and annotate the F. venenatum (strain A3/5) genome, and compare this genome with F. graminearum. RESULTS Using shotgun sequencing, a 38,660,329 bp F. venenatum genome was assembled into four chromosomes, and a 78,618 bp mitochondrial genome. In comparison to F. graminearum, the predicted gene count of 13,946 was slightly lower. The F. venenatum centromeres were found to be 25% smaller compared to F. graminearum. Chromosome length was 2.8% greater in F. venenatum, primarily due to an increased abundance of repetitive elements and transposons, but not transposon diversity. On chromosome 3 a major sequence rearrangement was found, but its overall gene content was relatively unchanged. Unlike homothallic F. graminearum, heterothallic F. venenatum possessed the MAT1-1 type locus, but lacked the MAT1-2 locus. The F. venenatum genome has the type A trichothecene mycotoxin TRI5 cluster, whereas F. graminearum has type B. From the F. venenatum gene set, 786 predicted proteins were species-specific versus NCBI. The annotated F. venenatum genome was predicted to possess more genes coding for hydrolytic enzymes and species-specific genes involved in the breakdown of polysaccharides than F. graminearum. Comparison of the two genomes reduced the previously defined F. graminearum-specific gene set from 741 to 692 genes. A comparison of the F. graminearum versus F. venenatum proteomes identified 15 putative secondary metabolite gene clusters (SMC), 109 secreted proteins and 38 candidate effectors not found in F. venenatum. Five of the 15 F. graminearum-specific SMCs that were either absent or highly divergent in the F. venenatum genome showed increased in planta expression. In addition, two predicted F. graminearum transcription factors previously shown to be required for fungal virulence on wheat plants were absent or exhibited high sequence divergence. CONCLUSIONS This study identifies differences between the F. venenatum and F. graminearum genomes that may contribute to contrasting lifestyles, and highlights the repertoire of F. graminearum-specific candidate genes and SMCs potentially required for pathogenesis.
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Evolution of structural diversity of trichothecenes, a family of toxins produced by plant pathogenic and entomopathogenic fungi. PLoS Pathog 2018; 14:e1006946. [PMID: 29649280 PMCID: PMC5897003 DOI: 10.1371/journal.ppat.1006946] [Citation(s) in RCA: 114] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2017] [Accepted: 02/21/2018] [Indexed: 12/16/2022] Open
Abstract
Trichothecenes are a family of terpenoid toxins produced by multiple genera of fungi, including plant and insect pathogens. Some trichothecenes produced by the fungus Fusarium are among the mycotoxins of greatest concern to food and feed safety because of their toxicity and frequent occurrence in cereal crops, and trichothecene production contributes to pathogenesis of some Fusarium species on plants. Collectively, fungi produce over 150 trichothecene analogs: i.e., molecules that share the same core structure but differ in patterns of substituents attached to the core structure. Here, we carried out genomic, phylogenetic, gene-function, and analytical chemistry studies of strains from nine fungal genera to identify genetic variation responsible for trichothecene structural diversity and to gain insight into evolutionary processes that have contributed to the variation. The results indicate that structural diversity has resulted from gain, loss, and functional changes of trichothecene biosynthetic (TRI) genes. The results also indicate that the presence of some substituents has arisen independently in different fungi by gain of different genes with the same function. Variation in TRI gene duplication and number of TRI loci was also observed among the fungi examined, but there was no evidence that such genetic differences have contributed to trichothecene structural variation. We also inferred ancestral states of the TRI cluster and trichothecene biosynthetic pathway, and proposed scenarios for changes in trichothecene structures during divergence of TRI cluster homologs. Together, our findings provide insight into evolutionary processes responsible for structural diversification of toxins produced by pathogenic fungi. Toxins produced by pathogens can contribute to infection and/or colonization of hosts. Some toxins consist of a family of metabolites with similar but distinct chemical structures. This structural variation can affect biological activity, which in turn likely contributes to adaptation to different environments, including to different hosts. Trichothecene toxins consist of over 150 structurally distinct molecules produced by certain fungi, including some plant and insect pathogens. In multiple systems that have been examined, trichothecenes contribute to pathogenesis on plants. To elucidate the evolutionary processes that have given rise to trichothecene structural variation, we conducted comparative analyses of nine fungal genera, most of which produce different trichothecene structures. Using genomic, molecular biology, phylogenetic, and analytical chemistry approaches, we obtained evidence that trichothecene structural variation has arisen primarily from gain, loss, and functional changes of trichothecene biosynthetic genes. Our results also indicate that some structural changes have arisen independently in different fungi. Our findings provide insight into genetic and biochemical changes that can occur in toxin biosynthetic pathways as fungi with the pathways adapt to different environmental conditions.
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Stakheev AA, Samokhvalova LV, Mikityuk OD, Zavriev SK. Phylogenetic Analysis and Molecular Typing of Trichothecene-Producing Fusarium Fungi from Russian Collections. Acta Naturae 2018; 10:79-92. [PMID: 30116619 PMCID: PMC6087817] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2018] [Indexed: 11/21/2022] Open
Abstract
We performed a three-locus phylogenetic analysis of Fusarium strains presumably capable of trichothecene production, which were deposited in the Russian national collections. The intra- and interspecific polymorphism of partial sequences of the translation elongation factor 1 alpha (TEF1α) gene and two genes from the trichothecene cluster TRI5 and TRI14 was studied. A study of 60 strains of different origins using DNA markers confirmed, and in the case for several strains, clarified their taxonomic characteristics. As a result, a strain of F. commune (F-900) was identified in Russia for the first time. Furthermore, the strain F-846 proved to be phylogenetically distinct from any of the known Fusarium species. F. equiseti strains from Northwest Russia were found to belong to the North European group (I), whereas a strain from the North Caucasus - to the South European one (II). Partial TRI14 sequences from 9 out of 12 species were determined for the first time. Their comparative analysis demonstrated a relatively high level of intraspecific variability in F. graminearum and F. sporotrichioides, but no correlation between the sequence polymorphism and the geographic origin of the strains or their chemotype was found. Specific chemotypes of trichothecene B producers were characterized using two primer sets. The chemotyping results were verified by HPLC.
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Affiliation(s)
- A. A. Stakheev
- M.M. Shemyakin and Yu.A. Ovchinnikov Institute of Bioorganic chemistry of the Russian Academy of Sciences, Miklukho-Maklaya Str. 16\10, Moscow, 117997, Russia
| | - L. V. Samokhvalova
- M.M. Shemyakin and Yu.A. Ovchinnikov Institute of Bioorganic chemistry of the Russian Academy of Sciences, Miklukho-Maklaya Str. 16\10, Moscow, 117997, Russia
| | - O. D. Mikityuk
- All-Russian Research Institute of Phytopathology, Institut Str. 5, B. Vyazyomy, Moscow region, 143050 , Russia
| | - S. K. Zavriev
- M.M. Shemyakin and Yu.A. Ovchinnikov Institute of Bioorganic chemistry of the Russian Academy of Sciences, Miklukho-Maklaya Str. 16\10, Moscow, 117997, Russia
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Yin T, Zhang Q, Wang J, Liu H, Wang C, Xu J, Jiang C. The cyclase-associated protein FgCap1 has both protein kinase A-dependent and -independent functions during deoxynivalenol production and plant infection in Fusarium graminearum. MOLECULAR PLANT PATHOLOGY 2018; 19:552-563. [PMID: 28142217 PMCID: PMC6638064 DOI: 10.1111/mpp.12540] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2016] [Revised: 01/21/2017] [Accepted: 01/23/2017] [Indexed: 05/25/2023]
Abstract
Fusarium graminearum is a causal agent of wheat scab and a producer of the trichothecene mycotoxin deoxynivalenol (DON). The expression of trichothecene biosynthesis (TRI) genes and DON production are mainly regulated by the cyclic adenosine monophosphate-protein kinase A (cAMP-PKA) pathway and two pathway-specific transcription factors (TRI6 and TRI10). Interestingly, deletion mutants of TRI6 show reduced expression of several components of cAMP signalling, including the FgCAP1 adenylate-binding protein gene that has not been functionally characterized in F. graminearum. In this study, we show that FgCap1 interacts with Fac1 adenylate cyclase and that deletion of FgCAP1 reduces the intracellular cAMP level and PKA activity. The Fgcap1 deletion mutant is defective in vegetative growth, conidiogenesis and plant infection. It also shows significantly reduced DON production and TRI gene expression, which can be suppressed by exogenous cAMP, indicating a PKA-dependent regulation of DON biosynthesis by FgCap1. The wild-type, but not tri6 mutant, shows increased levels of intracellular cAMP and FgCAP1 expression under DON-producing conditions. Furthermore, the promoter of FgCAP1 contains one putative Tri6-binding site that is important for its function during DON biosynthesis, but is dispensable for hyphal growth, conidiogenesis and pathogenesis. In addition, FgCap1 shows an actin-like localization to the cortical patches at the apical region of hyphal tips. Phosphorylation of FgCap1 at S353 was identified by phosphoproteomics analysis. The S353A mutation in FgCAP1 has no effect on its functions during vegetative growth, conidiation and DON production. However, expression of the FgCAP1S353A allele fails to complement the defects of the Fgcap1 mutant in plant infection, indicating the importance of the phosphorylation of FgCap1 at S353 during pathogenesis. Taken together, our results suggest that FgCAP1 is involved in the regulation of DON production via cAMP signalling and subjected to a feedback regulation by TRI6, but the phosphorylation of FgCap1 at S353 is probably unrelated to the cAMP-PKA pathway because the S353A mutation only affects plant infection.
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Affiliation(s)
- Tao Yin
- State Key Laboratory of Crop Stress Biology for Arid AreasNorthwest A&F UniversityYanglingShaanxi712100China
- Department of Botany and Plant PathologyPurdue UniversityWest LafayetteIN 47907USA
| | - Qiang Zhang
- State Key Laboratory of Crop Stress Biology for Arid AreasNorthwest A&F UniversityYanglingShaanxi712100China
| | - Jianhua Wang
- Department of Botany and Plant PathologyPurdue UniversityWest LafayetteIN 47907USA
- Institute for Agri‐food Standards and Testing TechnologyShanghai Academy of Agricultural SciencesShanghai201403China
| | - Huiquan Liu
- State Key Laboratory of Crop Stress Biology for Arid AreasNorthwest A&F UniversityYanglingShaanxi712100China
| | - Chenfang Wang
- State Key Laboratory of Crop Stress Biology for Arid AreasNorthwest A&F UniversityYanglingShaanxi712100China
| | - Jin‐Rong Xu
- State Key Laboratory of Crop Stress Biology for Arid AreasNorthwest A&F UniversityYanglingShaanxi712100China
- Department of Botany and Plant PathologyPurdue UniversityWest LafayetteIN 47907USA
| | - Cong Jiang
- State Key Laboratory of Crop Stress Biology for Arid AreasNorthwest A&F UniversityYanglingShaanxi712100China
- Department of Botany and Plant PathologyPurdue UniversityWest LafayetteIN 47907USA
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Castiblanco V, Castillo HE, Miedaner T. Candidate Genes for Aggressiveness in a Natural Fusarium culmorum Population Greatly Differ between Wheat and Rye Head Blight. J Fungi (Basel) 2018; 4:E14. [PMID: 29371506 PMCID: PMC5872317 DOI: 10.3390/jof4010014] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Revised: 01/08/2018] [Accepted: 01/09/2018] [Indexed: 12/21/2022] Open
Abstract
Fusarium culmorum is one of the species causing Fusarium head blight (FHB) in cereals in Europe. We aimed to investigate the association between the nucleotide diversity of ten F. culmorum candidate genes and field ratings of aggressiveness in winter rye. A total of 100 F. culmorum isolates collected from natural infections were phenotyped for FHB at two locations and two years. Variance components for aggressiveness showed significant isolate and isolate-by-environment variance, as expected for quantitative host-pathogen interactions. Further analysis of the isolate-by-environment interaction revealed the dominant role of the isolate-by-year over isolate-by-location interaction. One single-nucleotide polymorphism (SNP) in the cutinase (CUT) gene was found to be significantly (p < 0.001) associated with aggressiveness and explained 16.05% of the genotypic variance of this trait in rye. The SNP was located 60 base pairs before the start codon, which suggests a role in transcriptional regulation. Compared to a previous study in winter wheat with the same nucleotide sequences, a larger variation of pathogen aggressiveness on rye was found and a different candidate gene was associated with pathogen aggressiveness. This is the first report on the association of field aggressiveness and a host-specific candidate gene codifying for a protein that belongs to the secretome in F. culmorum.
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Affiliation(s)
- Valheria Castiblanco
- State Plant Breeding Institute, University of Hohenheim, 70599 Stuttgart, Germany.
| | - Hilda Elena Castillo
- State Plant Breeding Institute, University of Hohenheim, 70599 Stuttgart, Germany.
| | - Thomas Miedaner
- State Plant Breeding Institute, University of Hohenheim, 70599 Stuttgart, Germany.
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Brown NA, Evans J, Mead A, Hammond‐Kosack KE. A spatial temporal analysis of the Fusarium graminearum transcriptome during symptomless and symptomatic wheat infection. MOLECULAR PLANT PATHOLOGY 2017; 18:1295-1312. [PMID: 28466509 PMCID: PMC5697668 DOI: 10.1111/mpp.12564] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2017] [Revised: 04/10/2017] [Accepted: 04/24/2017] [Indexed: 05/20/2023]
Abstract
Fusarium head blight of wheat is one of the most serious and hazardous crop diseases worldwide. Here, a transcriptomic investigation of Fusarium graminearum reveals a new model for symptomless and symptomatic wheat infection. The predicted metabolic state and secretome of F. graminearum were distinct within symptomless and symptomatic wheat tissues. Transcripts for genes involved in the biosynthesis of the mycotoxin, deoxynivalenol, plus other characterized and putative secondary metabolite clusters increased in abundance in symptomless tissue. Transcripts encoding for genes of distinct groups of putative secreted effectors increased within either symptomless or symptomatic tissue. Numerous pathogenicity-associated gene transcripts and transcripts representing PHI-base mutations that impacted on virulence increased in symptomless tissue. In contrast, hydrolytic carbohydrate-active enzyme (CAZyme) and lipase gene transcripts exhibited a different pattern of expression, resulting in elevated transcript abundance during the development of disease symptoms. Genome-wide comparisons with existing datasets confirmed that, within the wheat floral tissue, at a single time point, different phases of infection co-exist, which are spatially separated and reminiscent of both early and late infection. This study provides novel insights into the combined spatial temporal coordination of functionally characterized and hypothesized virulence strategies.
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Affiliation(s)
- Neil A. Brown
- Department of Biointeractions and Crop ProtectionRothamsted ResearchHarpenden, Hertfordshire AL5 2JQ, UK
| | - Jess Evans
- Computational and Analytical SciencesRothamsted ResearchHarpenden, Hertfordshire AL5 2JQ, UK
| | - Andrew Mead
- Computational and Analytical SciencesRothamsted ResearchHarpenden, Hertfordshire AL5 2JQ, UK
| | - Kim E. Hammond‐Kosack
- Department of Biointeractions and Crop ProtectionRothamsted ResearchHarpenden, Hertfordshire AL5 2JQ, UK
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58
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van der Does HC, Rep M. Adaptation to the Host Environment by Plant-Pathogenic Fungi. ANNUAL REVIEW OF PHYTOPATHOLOGY 2017; 55:427-450. [PMID: 28645233 DOI: 10.1146/annurev-phyto-080516-035551] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Many fungi can live both saprophytically and as endophyte or pathogen inside a living plant. In both environments, complex organic polymers are used as sources of nutrients. Propagation inside a living host also requires the ability to respond to immune responses of the host. We review current knowledge of how plant-pathogenic fungi do this. First, we look at how fungi change their global gene expression upon recognition of the host environment, leading to secretion of effectors, enzymes, and secondary metabolites; changes in metabolism; and defense against toxic compounds. Second, we look at what is known about the various cues that enable fungi to sense the presence of living plant cells. Finally, we review literature on transcription factors that participate in gene expression in planta or are suspected to be involved in that process because they are required for the ability to cause disease.
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Affiliation(s)
| | - Martijn Rep
- Molecular Plant Pathology, University of Amsterdam, 1098XH Amsterdam, The Netherlands;
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Zheng X, Zhang X, Zhao L, Apaliya MT, Yang Q, Sun W, Zhang X, Zhang H. Screening of Deoxynivalenol Producing Strains and Elucidation of Possible Toxigenic Molecular Mechanism. Toxins (Basel) 2017; 9:toxins9060184. [PMID: 28587179 PMCID: PMC5488034 DOI: 10.3390/toxins9060184] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2017] [Revised: 05/24/2017] [Accepted: 05/27/2017] [Indexed: 12/13/2022] Open
Abstract
In this study, seven strains of Fusarium graminearum were isolated from wheat, of which six were identified to produce deoxynivalenol and the production of deoxynivalenol was assessed. F. graminearum strain Fg1 was noted to produce 1.0 μg/g deoxynivalenol during the incubation period in the Czapek yeast broth, while none was detected in F. graminearum strain Fg2. Hence, the differences in proteomes and transcriptomes of Fg1 and Fg2 were compared to analyze the mechanism underlying deoxynivalenol production. Among the 66 significantly differentially expressed proteins in Fg1, 39 and 27 were more or less abundant expressed. Functional analysis suggested that the enzymes involved in the methylerythritol 4-phosphate and mevalonate pathways, which provide a substrate for biosynthesis of farnesyl pyrophosphate, a precursor of DON, were activated in Fg1. The transcriptomics data demonstrated that the expression level of a majority of genes, including trichothecene biosynthetic genes, protein kinases, and transcription factors, involved in trichothecene biosynthesis was higher in Fg1 than in Fg2. The results also revealed differential expression profiles of deoxynivalenol biosynthesis genes in strains Fg1 and Fg2, which emphasized their deoxynivalenol producing ability and the underlying mechanism.
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Affiliation(s)
- Xiangfeng Zheng
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China.
| | - Xiaoli Zhang
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China.
| | - Lina Zhao
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China.
| | - Maurice T Apaliya
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China.
| | - Qiya Yang
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China.
| | - Wei Sun
- Zhen Jiang Grain and Oil Quality Testing Center, Zhenjiang 212013, Jiangsu, China.
| | - Xiaoyun Zhang
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China.
| | - Hongyin Zhang
- School of Food and Biological Engineering, Jiangsu University, Zhenjiang 212013, Jiangsu, China.
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Castiblanco V, Marulanda JJ, Würschum T, Miedaner T. Candidate gene based association mapping in Fusarium culmorum for field quantitative pathogenicity and mycotoxin production in wheat. BMC Genet 2017; 18:49. [PMID: 28525967 PMCID: PMC5438566 DOI: 10.1186/s12863-017-0511-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2016] [Accepted: 05/08/2017] [Indexed: 11/10/2022] Open
Abstract
Background Quantitative traits are common in nature, but quantitative pathogenicity has received only little attention in phytopathology. In this study, we used 100 Fusarium culmorum isolates collected from natural field environments to assess their variation for two quantitative traits, aggressiveness and deoxynivalenol (DON) production on wheat plants grown in four different field environments (location-year combinations). Seventeen Fusarium graminearum pathogenicity candidate genes were assessed for their effect on the aggressiveness and DON production of F. culmorum under field conditions. Results For both traits, genotypic variance among isolates was high and significant while the isolate-by-environment interaction was also significant, amounting to approximately half of the genotypic variance. Among the studied candidate genes, the mitogen-activated protein kinase (MAPK) HOG1 was found to be significantly associated with aggressiveness and deoxynivalenol (DON) production, explaining 10.29 and 6.05% of the genotypic variance, respectively. Conclusions To the best of our knowledge, this is the first report of a protein kinase regulator explaining differences in field aggressiveness and mycotoxin production among individuals from natural populations of a plant pathogen. Electronic supplementary material The online version of this article (doi:10.1186/s12863-017-0511-9) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Valheria Castiblanco
- State Plant Breeding Institute, University of Hohenheim, 70593, Stuttgart, Germany
| | - Jose J Marulanda
- Institute of Plant Breeding, Seed Science and Population Genetics, University of Hohenheim, 79593, Stuttgart, Germany
| | - Tobias Würschum
- State Plant Breeding Institute, University of Hohenheim, 70593, Stuttgart, Germany
| | - Thomas Miedaner
- State Plant Breeding Institute, University of Hohenheim, 70593, Stuttgart, Germany.
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Abstract
Binding of proteins to specific DNA sequences is essential for a variety of cellular processes such as DNA replication, transcription and responses to external stimuli. Chromatin immunoprecipitation is widely used for determining intracellular DNA fragments bound by a specific protein. However, the subsequent specific or accurate DNA-protein-binding sequence is usually determined by DNA footprinting. Here, we report an alternative method for identifying specific sites of DNA-protein-binding (designated SSDP) in vitro. This technique is mainly dependent on antibody-antigen immunity, simple and convenient, while radioactive isotope labeling and optimization of partial degradation by deoxyribonuclease (DNase) are avoided. As an example, the specific binding sequence of a target promoter by DdrO (a DNA damage response protein from Deinococcus radiodurans) in vitro was determined by the developed method. The central sequence of the binding site could be easily located using this technique.
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Qiu JB, Sun JT, Yu MZ, Xu JH, Shi JR. Temporal dynamics, population characterization and mycotoxins accumulation of Fusarium graminearum in Eastern China. Sci Rep 2016; 6:36350. [PMID: 27853184 PMCID: PMC5113074 DOI: 10.1038/srep36350] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2016] [Accepted: 10/11/2016] [Indexed: 01/03/2023] Open
Abstract
Trichothecene genotype composition, mycotoxin production, genetic diversity, and population structure were analyzed, using 185 Fusarium strains collected from wheat (Triticum aestivum L.) throughout the Jiangsu province during 1976, 1983, 1998, 2006, and 2014. The results showed that 3-acetyldeoxynivalenol (3ADON) was consistently the predominant type in this region over 40 years, and the nivalenol (NIV) type has emerged since 1998. Long-term rotation of wheat and rice (Oryza sativa L.), rather than fungicide application, crop fitness, or weather conditions, might be the main cause of this phenomenon. The genetic diversity results from two toxin synthetic genes, Pks4 and Tri10, and variable number of tandem repeat (VNTR) markers revealed the largest variance within the population in 1998, which was also the year with the highest production of mycotoxins. Population differentiation analysis indicated that major temporal population comparisons from the same area were not significantly differentiated. Our results showed that dominant species could maintain genetic stability for a long time, and Pks4 would be of utility in genetic and population studies.
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Affiliation(s)
- Jian-bo Qiu
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratoriky Cultivation Base, Jiangsu Academy of Agricultural Sciences, 210014, China
- Key Laboratory of Control Technology and Standard for Agro-Product Quality and Safety, Ministry of Agriculture, Jiangsu Academy of Agricultural Sciences, 210014, China
- Collaborative Innovation Center for Modern Grain Circulation and Safety, Jiangsu Academy of Agricultural Sciences, 210014, China
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural Sciences, 210014, China
| | - Jing-Tao Sun
- Department of Entomology, Nanjing Agricultural University, Nanjing, 210095, China
| | - Ming-Zheng Yu
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratoriky Cultivation Base, Jiangsu Academy of Agricultural Sciences, 210014, China
- Key Laboratory of Control Technology and Standard for Agro-Product Quality and Safety, Ministry of Agriculture, Jiangsu Academy of Agricultural Sciences, 210014, China
- Collaborative Innovation Center for Modern Grain Circulation and Safety, Jiangsu Academy of Agricultural Sciences, 210014, China
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural Sciences, 210014, China
| | - Jian-Hong Xu
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratoriky Cultivation Base, Jiangsu Academy of Agricultural Sciences, 210014, China
- Key Laboratory of Control Technology and Standard for Agro-Product Quality and Safety, Ministry of Agriculture, Jiangsu Academy of Agricultural Sciences, 210014, China
- Collaborative Innovation Center for Modern Grain Circulation and Safety, Jiangsu Academy of Agricultural Sciences, 210014, China
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural Sciences, 210014, China
| | - Jian-Rong Shi
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratoriky Cultivation Base, Jiangsu Academy of Agricultural Sciences, 210014, China
- Key Laboratory of Control Technology and Standard for Agro-Product Quality and Safety, Ministry of Agriculture, Jiangsu Academy of Agricultural Sciences, 210014, China
- Collaborative Innovation Center for Modern Grain Circulation and Safety, Jiangsu Academy of Agricultural Sciences, 210014, China
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural Sciences, 210014, China
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Puri KD, Yan C, Leng Y, Zhong S. RNA-Seq Revealed Differences in Transcriptomes between 3ADON and 15ADON Populations of Fusarium graminearum In Vitro and In Planta. PLoS One 2016; 11:e0163803. [PMID: 27788144 PMCID: PMC5082872 DOI: 10.1371/journal.pone.0163803] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Accepted: 09/14/2016] [Indexed: 01/24/2023] Open
Abstract
Fusarium graminearum is the major causal agent of Fusarium head blight (FHB) in barley and wheat in North America. The fungus not only causes yield loss of the crops but also produces harmful trichothecene mycotoxins [Deoxynivalenol (DON) and its derivatives-3-acetyldeoxynivalenol (3ADON) and 15-acetyldeoxynivalenol (15ADON), and nivalenol (NIV)] that contaminate grains. Previous studies showed a dramatic increase of 3ADON-producing isolates with higher aggressiveness and DON production than the 15ADON-producing isolates in North America. However, the genetic and molecular basis of differences between the two types of isolates is unclear. In this study, we compared transcriptomes of the 3ADON and 15ADON isolates in vitro (in culture media) and in planta (during infection on the susceptible wheat cultivar 'Briggs') using RNA-sequencing. The in vitro gene expression comparison identified 479 up-regulated and 801 down-regulated genes in the 3ADON isolates; the up-regulated genes were mainly involved in C-compound and carbohydrate metabolism (18.6%), polysaccharide metabolism (7.7%) or were of unknown functions (57.6%). The in planta gene expression analysis revealed that 185, 89, and 62 genes were up-regulated in the 3ADON population at 48, 96, and 144 hours after inoculation (HAI), respectively. The up-regulated genes were significantly enriched in functions for cellular import, C-compound and carbohydrate metabolism, allantoin and allantoate transport at 48 HAI, for detoxification and virulence at 96 HAI, and for metabolism of acetic acid derivatives, detoxification, and cellular import at 144 HAI. Comparative analyses of in planta versus in vitro gene expression further revealed 2,159, 1,981 and 2,095 genes up-regulated in the 3ADON isolates, and 2,415, 2,059 and 1,777 genes up-regulated in the 15ADON isolates at the three time points after inoculation. Collectively, our data provides a foundation for further understanding of molecular mechanisms involved in aggressiveness and DON production of the two chemotype isolates of F. graminearum.
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Affiliation(s)
- Krishna D. Puri
- Department of Plant Pathology, North Dakota State University, Fargo, ND, United States of America
| | - Changhui Yan
- Department of Computer Science, North Dakota State University, Fargo, ND, United States of America
| | - Yueqiang Leng
- Department of Plant Pathology, North Dakota State University, Fargo, ND, United States of America
| | - Shaobin Zhong
- Department of Plant Pathology, North Dakota State University, Fargo, ND, United States of America
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64
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Snini SP, Tannous J, Heuillard P, Bailly S, Lippi Y, Zehraoui E, Barreau C, Oswald IP, Puel O. Patulin is a cultivar-dependent aggressiveness factor favouring the colonization of apples by Penicillium expansum. MOLECULAR PLANT PATHOLOGY 2016; 17:920-30. [PMID: 26582186 PMCID: PMC6638343 DOI: 10.1111/mpp.12338] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
The blue mould decay of apples is caused by Penicillium expansum and is associated with contamination by patulin, a worldwide regulated mycotoxin. Recently, a cluster of 15 genes (patA-patO) involved in patulin biosynthesis was identified in P. expansum. blast analysis revealed that patL encodes a Cys6 zinc finger regulatory factor. The deletion of patL caused a drastic decrease in the expression of all pat genes, leading to an absence of patulin production. Pathogenicity studies performed on 13 apple varieties indicated that the PeΔpatL strain could still infect apples, but the intensity of symptoms was weaker compared with the wild-type strain. A lower growth rate was observed in the PeΔpatL strain when this strain was grown on nine of the 13 apple varieties tested. In the complemented PeΔpatL:patL strain, the ability to grow normally in apple and the production of patulin were restored. Our results clearly demonstrate that patulin is not indispensable in the initiation of the disease, but acts as a cultivar-dependent aggressiveness factor for P. expansum. This conclusion was strengthened by the fact that the addition of patulin to apple infected by the PeΔpatL mutant restored the normal fungal colonization in apple.
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Affiliation(s)
- Selma P Snini
- INRA, UMR 1331, Toxalim, Research Centre in Food Toxicology, 180 Chemin de Tournefeuille, F-31027, Toulouse Cedex, France
- Université de Toulouse III, ENVT, INP, UMR 1331, Toxalim, F-31076, Toulouse, France
| | - Joanna Tannous
- INRA, UMR 1331, Toxalim, Research Centre in Food Toxicology, 180 Chemin de Tournefeuille, F-31027, Toulouse Cedex, France
- Université de Toulouse III, ENVT, INP, UMR 1331, Toxalim, F-31076, Toulouse, France
- Université Saint-Joseph, Centre d'Analyses et de Recherches (Faculté des Sciences), Campus des Sciences et Technologies, Mar Roukos, Mkallès, PO Box 11-514 Riad El Solh, Beyrouth, 1107 2050, Lebanon
| | - Pauline Heuillard
- INRA, UMR 1331, Toxalim, Research Centre in Food Toxicology, 180 Chemin de Tournefeuille, F-31027, Toulouse Cedex, France
- Université de Toulouse III, ENVT, INP, UMR 1331, Toxalim, F-31076, Toulouse, France
| | - Sylviane Bailly
- INRA, UMR 1331, Toxalim, Research Centre in Food Toxicology, 180 Chemin de Tournefeuille, F-31027, Toulouse Cedex, France
- Université de Toulouse III, ENVT, INP, UMR 1331, Toxalim, F-31076, Toulouse, France
| | - Yannick Lippi
- INRA, UMR 1331, Toxalim, Research Centre in Food Toxicology, 180 Chemin de Tournefeuille, F-31027, Toulouse Cedex, France
- Université de Toulouse III, ENVT, INP, UMR 1331, Toxalim, F-31076, Toulouse, France
| | - Enric Zehraoui
- INRA, UR1264 - MycSA, CS20032, F-33883, Villenave d'Ornon Cedex, France
| | - Christian Barreau
- INRA, UR1264 - MycSA, CS20032, F-33883, Villenave d'Ornon Cedex, France
| | - Isabelle P Oswald
- INRA, UMR 1331, Toxalim, Research Centre in Food Toxicology, 180 Chemin de Tournefeuille, F-31027, Toulouse Cedex, France
- Université de Toulouse III, ENVT, INP, UMR 1331, Toxalim, F-31076, Toulouse, France
| | - Olivier Puel
- INRA, UMR 1331, Toxalim, Research Centre in Food Toxicology, 180 Chemin de Tournefeuille, F-31027, Toulouse Cedex, France
- Université de Toulouse III, ENVT, INP, UMR 1331, Toxalim, F-31076, Toulouse, France
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65
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Guo L, Zhao G, Xu J, Kistler HC, Gao L, Ma L. Compartmentalized gene regulatory network of the pathogenic fungus Fusarium graminearum. THE NEW PHYTOLOGIST 2016; 211:527-41. [PMID: 26990214 PMCID: PMC5069591 DOI: 10.1111/nph.13912] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2015] [Accepted: 01/25/2016] [Indexed: 05/09/2023]
Abstract
Head blight caused by Fusarium graminearum threatens world-wide wheat production, resulting in both yield loss and mycotoxin contamination. We reconstructed the global F. graminearum gene regulatory network (GRN) from a large collection of transcriptomic data using Bayesian network inference, a machine-learning algorithm. This GRN reveals connectivity between key regulators and their target genes. Focusing on key regulators, this network contains eight distinct but interwoven modules. Enriched for unique functions, such as cell cycle, DNA replication, transcription, translation and stress responses, each module exhibits distinct expression profiles. Evolutionarily, the F. graminearum genome can be divided into core regions shared with closely related species and variable regions harboring genes that are unique to F. graminearum and perform species-specific functions. Interestingly, the inferred top regulators regulate genes that are significantly enriched from the same genomic regions (P < 0.05), revealing a compartmentalized network structure that may reflect network rewiring related to specific adaptation of this plant pathogen. This first-ever reconstructed filamentous fungal GRN primes our understanding of pathogenicity at the systems biology level and provides enticing prospects for novel disease control strategies involving the targeting of master regulators in pathogens. The program can be used to construct GRNs of other plant pathogens.
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Affiliation(s)
- Li Guo
- Department of Biochemistry and Molecular BiologyUniversity of Massachusetts AmherstAmherstMA01003USA
| | - Guoyi Zhao
- Department of Electrical & Computer EngineeringUniversity of Massachusetts AmherstAmherstMA01003USA
| | - Jin‐Rong Xu
- Department of Botany and Plant PathologyPurdue UniversityWest LafayetteIN47907USA
| | - H. Corby Kistler
- USDA‐ARSCereal Disease LaboratoryUniversity of MinnesotaSt PaulMN55108USA
| | - Lixin Gao
- Department of Electrical & Computer EngineeringUniversity of Massachusetts AmherstAmherstMA01003USA
| | - Li‐Jun Ma
- Department of Biochemistry and Molecular BiologyUniversity of Massachusetts AmherstAmherstMA01003USA
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66
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Gao T, Chen J, Shi Z. Fusarium graminearum pyruvate dehydrogenase kinase 1 (FgPDK1) Is Critical for Conidiation, Mycelium Growth, and Pathogenicity. PLoS One 2016; 11:e0158077. [PMID: 27341107 PMCID: PMC4920349 DOI: 10.1371/journal.pone.0158077] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2016] [Accepted: 06/09/2016] [Indexed: 12/03/2022] Open
Abstract
Pyruvate dehydrogenase kinase (PDK) is an important mitochondrial enzyme that blocks the production of acetyl-CoA by selectively inhibiting the activity of pyruvate dehydrogenase (PDH) through phosphorylation. PDK is an effectively therapeutic target in cancer cells, but the physiological roles of PDK in phytopathogens are largely unknown. To address these gaps, a PDK gene (FgPDK1) was isolated from Fusarium graminearum that is an economically important pathogen infecting cereals. The deletion of FgPDK1 in F. graminearum resulted in the increase in PDH activity, coinciding with several phenotypic defects, such as growth retardation, failure in perithecia and conidia production, and increase in pigment formation. The ΔFgPDK1 mutants showed enhanced sensitivity to osmotic stress and cell membrane-damaging agent. Physiological detection indicated that reactive oxygen species (ROS) accumulation and plasma membrane damage (indicated by PI staining, lipid peroxidation, and electrolyte leakage) occurred in ΔFgPDK1 mutants. The deletion of FgPDK1 also prohibited the production of deoxynivalenol (DON) and pathogenicity of F. graminearum, which may resulted from the decrease in the expression of Tri6. Taken together, this study firstly identified the vital roles of FgPDK1 in the development of phytopathogen F. graminearum, which may provide a potentially novel clue for target-directed development of agricultural fungicides.
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Affiliation(s)
- Tao Gao
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural Sciences, Nanjing, China
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratory Breeding Base, Nanjing, China
- Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing, China
| | - Jian Chen
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural Sciences, Nanjing, China
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratory Breeding Base, Nanjing, China
- Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing, China
| | - Zhiqi Shi
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural Sciences, Nanjing, China
- Key Lab of Food Quality and Safety of Jiangsu Province-State Key Laboratory Breeding Base, Nanjing, China
- Key Laboratory of Control Technology and Standard for Agro-product Safety and Quality, Ministry of Agriculture, Nanjing, China
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67
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Jiang C, Zhang C, Wu C, Sun P, Hou R, Liu H, Wang C, Xu JR. TRI6 and TRI10 play different roles in the regulation of deoxynivalenol (DON) production by cAMP signalling in Fusarium graminearum. Environ Microbiol 2016; 18:3689-3701. [PMID: 26940955 DOI: 10.1111/1462-2920.13279] [Citation(s) in RCA: 78] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2016] [Accepted: 02/19/2016] [Indexed: 12/30/2022]
Abstract
The biosynthesis of mycotoxin deoxynivalenol (DON) in Fusarium graminearum is regulated by two pathway-specific transcription factors Tri6 and Tri10 and affected by various host and environmental factors. In this study, we showed that cyclic adenosine monophosphate (cAMP) treatment induced DON production by stimulating TRI gene expression and DON-associated cellular differentiation in F. graminearum. Interestingly, exogenous cAMP had no effects on the tri6 mutant but partially recovered the defect of tri10 mutant in DON biosynthesis. Although the two cAMP phosphodiesterase genes PDE1 and PDE2 had overlapping functions in vegetative growth, conidiation, sexual reproduction and plant infection, deletion of PDE2 but not PDE1 activated intracellular PKA activities and increased DON production. Whereas the tri6 pde2 mutant failed to produce DON, the tri10 pde2 double mutant produced a significantly higher level of DON than the tri10 mutant. Cellular differentiation associated with DON production was stimulated by exogenous cAMP or deletion of PDE2 in both tri10 and tri6 mutants. These data indicate that TRI6 is essential for the regulation of DON biosynthesis by cAMP signalling but elevated PKA activities could partially bypass the requirement of TRI10 for TRI gene-expression and DON production, and Pde2 is the major cAMP phosphodiesterase to negatively regulate DON biosynthesis in F. graminearum.
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Affiliation(s)
- Cong Jiang
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwestern A&F University, Yangling, Shaanxi, 712100, China.,Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, 47907, USA
| | - Chengkang Zhang
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, 47907, USA
| | - Chunlan Wu
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwestern A&F University, Yangling, Shaanxi, 712100, China
| | - Panpan Sun
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwestern A&F University, Yangling, Shaanxi, 712100, China
| | - Rui Hou
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwestern A&F University, Yangling, Shaanxi, 712100, China
| | - Huiquan Liu
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwestern A&F University, Yangling, Shaanxi, 712100, China
| | - Chenfang Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwestern A&F University, Yangling, Shaanxi, 712100, China
| | - Jin-Rong Xu
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwestern A&F University, Yangling, Shaanxi, 712100, China.,Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, 47907, USA
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68
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Zhang Y, He J, Jia LJ, Yuan TL, Zhang D, Guo Y, Wang Y, Tang WH. Cellular Tracking and Gene Profiling of Fusarium graminearum during Maize Stalk Rot Disease Development Elucidates Its Strategies in Confronting Phosphorus Limitation in the Host Apoplast. PLoS Pathog 2016; 12:e1005485. [PMID: 26974960 PMCID: PMC4790934 DOI: 10.1371/journal.ppat.1005485] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2015] [Accepted: 02/10/2016] [Indexed: 01/07/2023] Open
Abstract
The ascomycete fungus Fusarium graminearum causes stalk rot in maize. We tracked this pathogen's growth in wound-inoculated maize stalks using a fluorescence-labeled fungal isolate and observed that invasive hyphae grew intercellularly up to 24 h post inoculation, grew intra- and inter-cellularly between 36-48 h, and fully occupied invaded cells after 72 h. Using laser microdissection and microarray analysis, we profiled changes in global gene expression during pathogen growth inside pith tissues of maize stalk from 12 h to six days after inoculation and documented transcriptomic patterns that provide further insights into the infection process. Expression changes in transcripts encoding various plant cell wall degrading enzymes appeared to correlate with inter- and intracellular hyphal growth. Genes associated with 36 secondary metabolite biosynthesis clusters were expressed. Expression of several F. graminearum genes potentially involved in mobilization of the storage lipid triacylglycerol and phosphorus-free lipid biosynthesis were induced during early infection time points, and deletion of these genes caused reduction of virulence in maize stalk. Furthermore, we demonstrated that the F. graminearum betaine lipid synthase 1 (BTA1) gene was necessary and sufficient for production of phosphorus-free membrane lipids, and that deletion of BTA1 interfered with F. graminearum's ability to advance intercellularly. We conclude that F. graminearum produces phosphorus-free membrane lipids to adapt to a phosphate-limited extracellular microenvironment during early stages of its invasion of maize stalk.
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Affiliation(s)
- Yan Zhang
- National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Juan He
- National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Lei-Jie Jia
- National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Ting-Lu Yuan
- National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Dong Zhang
- National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Yan Guo
- National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
| | - Yufeng Wang
- Department of Biology, South Texas Center for Emerging Infectious Diseases, University of Texas at San Antonio, San Antonio, Texas, United States of America
| | - Wei-Hua Tang
- National Key Laboratory of Plant Molecular Genetics, Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
- * E-mail:
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69
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Sakuda S, Yoshinari T, Furukawa T, Jermnak U, Takagi K, Iimura K, Yamamoto T, Suzuki M, Nagasawa H. Search for aflatoxin and trichothecene production inhibitors and analysis of their modes of action. Biosci Biotechnol Biochem 2016; 80:43-54. [DOI: 10.1080/09168451.2015.1086261] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Abstract
Abstract
Mycotoxin contamination of crops is a serious problem throughout the world because of its impact on human and animal health as well as economy. Inhibitors of mycotoxin production are useful not only for developing effective methods to prevent mycotoxin contamination, but also for investigating the molecular mechanisms of secondary metabolite production by fungi. We have been searching for mycotoxin production inhibitors among natural products and investigating their modes of action. In this article, we review aflatoxin and trichothecene production inhibitors, including our works on blasticidin S, methyl syringate, cyclo(l-Ala-l-Pro), respiration inhibitors, and precocene II.
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Affiliation(s)
- Shohei Sakuda
- Department of Applied Biological Chemistry, The University of Tokyo, Tokyo, Japan
| | - Tomoya Yoshinari
- Division of Microbiology, National Institute of Health Sciences, Tokyo, Japan
| | - Tomohiro Furukawa
- Department of Applied Biological Chemistry, The University of Tokyo, Tokyo, Japan
| | - Usuma Jermnak
- Faculty of Veterinary Medicine, Department of Pharmacology, Kasetsart University, Bangkok, Thailand
| | - Keiko Takagi
- Department of Applied Biological Chemistry, The University of Tokyo, Tokyo, Japan
| | - Kurin Iimura
- Department of Applied Biological Chemistry, The University of Tokyo, Tokyo, Japan
| | - Toshiyoshi Yamamoto
- Department of Applied Biological Chemistry, The University of Tokyo, Tokyo, Japan
| | - Michio Suzuki
- Department of Applied Biological Chemistry, The University of Tokyo, Tokyo, Japan
| | - Hiromichi Nagasawa
- Department of Applied Biological Chemistry, The University of Tokyo, Tokyo, Japan
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70
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Ta CAK, Guerrero-Analco JA, Roberts E, Liu R, Mogg CD, Saleem A, Otárola-Rojas M, Poveda L, Sanchez-Vindas P, Cal V, Caal F, Subramaniam R, Smith ML, Arnason JT. Antifungal Saponins from the Maya Medicinal Plant Cestrum schlechtendahlii G. Don (Solanaceae). Phytother Res 2015; 30:439-46. [PMID: 26666462 DOI: 10.1002/ptr.5545] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2015] [Revised: 11/15/2015] [Accepted: 11/23/2015] [Indexed: 11/10/2022]
Abstract
Bioassay-guided fractionation of the crude extract (80% EtOH) of the leaves of Cestrum schlechtendahlii, a plant used by Q'eqchi' Maya healers for treatment of athlete's foot, resulted in the isolation and identification of two spirostanol saponins (1 and 2). Structure elucidation by MS, 1D-NMR, and 2D-NMR spectroscopic methods identified them to be the known saponin (25R)-1β,2α-dihydroxy-5α-spirostan-3-β-yl-O-α-L-rhamnopyranosyl-(1 → 2)-β-D-galactopyranoside (1) and new saponin (25R)-1β,2α-dihydroxy-5α-spirostan-3-β-yl-O-β-D-galactopyranoside (2). While 2 showed little or no antifungal activity at the highest concentration tested, 1 inhibited growth of Saccharomyces cerevisiae (minimum inhibitory concentration (MIC) of 15-25 μM), Candida albicans, Cryptococcus neoformans, and Fusarium graminearum (MIC of 132-198 μM).
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Affiliation(s)
- Chieu Anh Kim Ta
- Laboratory for Analysis of Natural and Synthetic Environmental Toxins (LANSET), Department of Biology, University of Ottawa, Ottawa, Canada
| | - J Antonio Guerrero-Analco
- Laboratory for Analysis of Natural and Synthetic Environmental Toxins (LANSET), Department of Biology, University of Ottawa, Ottawa, Canada.,Red de Estudios Moleculares Avanzados, Instituto de Ecología A.C., Carretera Antigua a Coatepec, Xalapa, Veracruz, Mexico
| | - Elizabeth Roberts
- Laboratory for Analysis of Natural and Synthetic Environmental Toxins (LANSET), Department of Biology, University of Ottawa, Ottawa, Canada.,Department of Biology, Carleton University, Ottawa, ON, Canada
| | - Rui Liu
- Laboratory for Analysis of Natural and Synthetic Environmental Toxins (LANSET), Department of Biology, University of Ottawa, Ottawa, Canada
| | | | - Ammar Saleem
- Laboratory for Analysis of Natural and Synthetic Environmental Toxins (LANSET), Department of Biology, University of Ottawa, Ottawa, Canada
| | - Marco Otárola-Rojas
- Herbario Juvenal Valerio Rodriguez, Universidad Nacional Autonoma (UNA), Heredia, Costa Rica
| | - Luis Poveda
- Herbario Juvenal Valerio Rodriguez, Universidad Nacional Autonoma (UNA), Heredia, Costa Rica
| | - Pablo Sanchez-Vindas
- Herbario Juvenal Valerio Rodriguez, Universidad Nacional Autonoma (UNA), Heredia, Costa Rica
| | - Victor Cal
- Belize Indigenous Training Institute, Punta Gorda, Belize
| | - Federico Caal
- Belize Indigenous Training Institute, Punta Gorda, Belize
| | | | - Myron L Smith
- Department of Biology, Carleton University, Ottawa, ON, Canada
| | - John T Arnason
- Laboratory for Analysis of Natural and Synthetic Environmental Toxins (LANSET), Department of Biology, University of Ottawa, Ottawa, Canada
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71
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Hou R, Jiang C, Zheng Q, Wang C, Xu JR. The AreA transcription factor mediates the regulation of deoxynivalenol (DON) synthesis by ammonium and cyclic adenosine monophosphate (cAMP) signalling in Fusarium graminearum. MOLECULAR PLANT PATHOLOGY 2015; 16:987-99. [PMID: 25781642 PMCID: PMC6638501 DOI: 10.1111/mpp.12254] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Deoxynivalenol (DON), a trichothecene mycotoxin produced by Fusarium graminearum, is harmful to humans and animals. Because different nitrogen sources are known to have opposite effects on DON production, in this study, we characterized the regulatory mechanisms of the AREA transcription factor in trichothecene biosynthesis. The ΔareA mutant showed significantly reduced vegetative growth and DON production in cultures inoculated with hyphae. Suppression of TRI gene expression and DON production by ammonium were diminished in the ΔareA mutant. The deletion of AREA also affected the stimulatory effects of arginine on DON biosynthesis. The AreA-green fluorescent protein (GFP) fusion complemented the ΔareA mutant, and its localization to the nucleus was enhanced under nitrogen starvation conditions. Site-directed mutagenesis showed that the conserved predicted protein kinase A (PKA) phosphorylation site S874 was important for AreA function, indicating that AreA may be a downstream target of the cyclic adenosine monophosphate (cAMP)-PKA pathway, which is known to regulate DON production. We also showed that AreA interacted with Tri10 in co-immunoprecipitation assays. The interaction of AreA with Tri10 is probably related to its role in the regulation of TRI gene expression. Interestingly, the ΔareA mutant showed significantly reduced PKA activity and expression of all three predicted ammonium permease (MEP) genes, in particular MEP1, under low ammonium conditions. Taken together, our results show that AREA is involved in the regulation of DON production by ammonium suppression and the cAMP-PKA pathway. The AreA transcription factor may interact with Tri10 and control the expression and up-regulation of MEP genes.
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Affiliation(s)
- Rui Hou
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest Agricultural and Forestry University, Yangling, Shaanxi, 712100, China
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, 47907, USA
| | - Cong Jiang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest Agricultural and Forestry University, Yangling, Shaanxi, 712100, China
| | - Qian Zheng
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest Agricultural and Forestry University, Yangling, Shaanxi, 712100, China
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, 47907, USA
| | - Chenfang Wang
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest Agricultural and Forestry University, Yangling, Shaanxi, 712100, China
| | - Jin-Rong Xu
- State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest Agricultural and Forestry University, Yangling, Shaanxi, 712100, China
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, 47907, USA
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72
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Walkowiak S, Bonner CT, Wang L, Blackwell B, Rowland O, Subramaniam R. Intraspecies Interaction of Fusarium graminearum Contributes to Reduced Toxin Production and Virulence. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2015; 28:1256-67. [PMID: 26125491 DOI: 10.1094/mpmi-06-15-0120-r] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Fusarium graminearum is a pathogenic fungus that causes Fusarium head blight in wheat and lowers the yield and quality of grains by contamination with the trichothecene mycotoxin deoxynivalenol. The fungi coexist and interact with several different fusaria as well as other plant pathogenic fungi and bacteria in the field. In Canada, F. graminearum exists as two main trichothecene chemotypes: 3-acetyldeoxynivalenol and 15-acetyldeoxynivalenol. To understand the potential interactions between two isolates of these chemotypes, we conducted coinoculation studies both in culture and in planta. The studies showed that intraspecies interaction reduces trichothecene yield in culture and disease symptoms in wheat. To elucidate the genes involved in the intraspecies interaction, expression profiling was performed on RNA samples isolated from coinoculated cultures, and potential genes were identified by using the genome sequences of the respective isolates.
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Affiliation(s)
- Sean Walkowiak
- 1 Eastern Cereal and Oilseed Research Centre, 960 Carling, Agriculture and Agri-Food Canada, Ottawa K1A 0C6, Canada
- 2 Department of Biology, 1125 Colonel By, Carleton University, Ottawa K1S 5B6, Canada
| | - Christopher T Bonner
- 1 Eastern Cereal and Oilseed Research Centre, 960 Carling, Agriculture and Agri-Food Canada, Ottawa K1A 0C6, Canada
- 2 Department of Biology, 1125 Colonel By, Carleton University, Ottawa K1S 5B6, Canada
| | - Li Wang
- 1 Eastern Cereal and Oilseed Research Centre, 960 Carling, Agriculture and Agri-Food Canada, Ottawa K1A 0C6, Canada
| | - Barbara Blackwell
- 1 Eastern Cereal and Oilseed Research Centre, 960 Carling, Agriculture and Agri-Food Canada, Ottawa K1A 0C6, Canada
| | - Owen Rowland
- 2 Department of Biology, 1125 Colonel By, Carleton University, Ottawa K1S 5B6, Canada
| | - Rajagopal Subramaniam
- 1 Eastern Cereal and Oilseed Research Centre, 960 Carling, Agriculture and Agri-Food Canada, Ottawa K1A 0C6, Canada
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Bönnighausen J, Gebhard D, Kröger C, Hadeler B, Tumforde T, Lieberei R, Bergemann J, Schäfer W, Bormann J. Disruption of the GABA shunt affects mitochondrial respiration and virulence in the cereal pathogen Fusarium graminearum. Mol Microbiol 2015; 98:1115-32. [PMID: 26305050 DOI: 10.1111/mmi.13203] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/24/2015] [Indexed: 01/07/2023]
Abstract
The cereal pathogen Fusarium graminearum threatens food and feed production worldwide. It reduces the yield and poisons the remaining kernels with mycotoxins, notably deoxynivalenol (DON). We analyzed the importance of gamma-aminobutanoic acid (GABA) metabolism for the life cycle of this fungal pathogen. GABA metabolism in F. graminearum is partially regulated by the global nitrogen regulator AreA. Genetic disruption of the GABA shunt by deletion of two GABA transaminases renders the pathogen unable to utilize the plant stress metabolites GABA and putrescine. The mutants showed increased sensitivity against oxidative stress, GABA accumulation in the mycelium, downregulation of two key enzymes of the TCA cycle, disturbed potential gradient in the mitochondrial membrane and lower mitochondrial oxygen consumption. In contrast, addition of GABA to the wild type resulted in its rapid turnover and increased mitochondrial steady state oxygen consumption. GABA concentrations are highly upregulated in infected wheat tissues. We conclude that GABA is metabolized by the pathogen during infection increasing its energy production, whereas the mutants accumulate GABA intracellularly resulting in decreased energy production. Consequently, the GABA mutants are strongly reduced in virulence but, because of their DON production, are able to cross the rachis node.
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Affiliation(s)
- Jakob Bönnighausen
- Biocenter Klein Flottbek, Department of Molecular Phytopathology and Genetics, University of Hamburg, Ohnhorststr. 18, D-22609, Hamburg, Germany
| | - Daniel Gebhard
- Department of Life Sciences, Albstadt-Sigmaringen University of Applied Sciences, Anton-Günther-Str. 51, D-72488, Sigmaringen, Germany
| | - Cathrin Kröger
- Biocenter Klein Flottbek, Department of Molecular Phytopathology and Genetics, University of Hamburg, Ohnhorststr. 18, D-22609, Hamburg, Germany
| | - Birgit Hadeler
- Biocenter Klein Flottbek, Department of Molecular Phytopathology and Genetics, University of Hamburg, Ohnhorststr. 18, D-22609, Hamburg, Germany
| | - Thomas Tumforde
- Biocenter Klein Flottbek, Department of Applied Plant Ecology and Biodiversity of Useful Plants, University of Hamburg, Ohnhorststr. 18, D-22609, Hamburg, Germany
| | - Reinhard Lieberei
- Biocenter Klein Flottbek, Department of Applied Plant Ecology and Biodiversity of Useful Plants, University of Hamburg, Ohnhorststr. 18, D-22609, Hamburg, Germany
| | - Jörg Bergemann
- Department of Life Sciences, Albstadt-Sigmaringen University of Applied Sciences, Anton-Günther-Str. 51, D-72488, Sigmaringen, Germany
| | - Wilhelm Schäfer
- Biocenter Klein Flottbek, Department of Molecular Phytopathology and Genetics, University of Hamburg, Ohnhorststr. 18, D-22609, Hamburg, Germany
| | - Jörg Bormann
- Biocenter Klein Flottbek, Department of Molecular Phytopathology and Genetics, University of Hamburg, Ohnhorststr. 18, D-22609, Hamburg, Germany
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Liu Y, Liu N, Yin Y, Chen Y, Jiang J, Ma Z. Histone H3K4 methylation regulates hyphal growth, secondary metabolism and multiple stress responses inFusarium graminearum. Environ Microbiol 2015; 17:4615-30. [DOI: 10.1111/1462-2920.12993] [Citation(s) in RCA: 64] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2015] [Revised: 07/17/2015] [Accepted: 07/18/2015] [Indexed: 12/01/2022]
Affiliation(s)
- Ye Liu
- Institute of Biotechnology; Zhejiang University; Hangzhou 310058 China
| | - Na Liu
- Institute of Biotechnology; Zhejiang University; Hangzhou 310058 China
| | - Yanni Yin
- Institute of Biotechnology; Zhejiang University; Hangzhou 310058 China
| | - Yun Chen
- Institute of Biotechnology; Zhejiang University; Hangzhou 310058 China
| | - Jinhua Jiang
- Institute of Quality and Standard for Agro-products; Zhejiang Academy of Agricultural Sciences; Hangzhou 310021 Zhejiang China
| | - Zhonghua Ma
- Institute of Biotechnology; Zhejiang University; Hangzhou 310058 China
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Subramaniam R, Narayanan S, Walkowiak S, Wang L, Joshi M, Rocheleau H, Ouellet T, Harris LJ. Leucine metabolism regulates TRI6 expression and affects deoxynivalenol production and virulence in Fusarium graminearum. Mol Microbiol 2015; 98:760-9. [PMID: 26248604 DOI: 10.1111/mmi.13155] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/01/2015] [Indexed: 02/04/2023]
Abstract
TRI6 is a positive regulator of the trichothecene gene cluster and the production of trichothecene mycotoxins [deoxynivalenol (DON)] and acetylated forms such as 15-Acetyl-DON) in the cereal pathogen Fusarium graminearum. As a global transcriptional regulator, TRI6 expression is modulated by nitrogen-limiting conditions, sources of nitrogen and carbon, pH and light. However, the mechanism by which these diverse environmental factors affect TRI6 expression remains underexplored. In our effort to understand how nutrients affect TRI6 regulation, comparative digital expression profiling was performed with a wild-type F. graminearum and a Δtri6 mutant strain, grown in nutrient-rich conditions. Analysis showed that TRI6 negatively regulates genes of the branched-chain amino acid (BCAA) metabolic pathway. Feeding studies with deletion mutants of MCC, encoding methylcrotonyl-CoA-carboxylase, one of the key enzymes of leucine metabolism, showed that addition of leucine specifically down-regulated TRI6 expression and reduced 15-ADON accumulation. Constitutive expression of TRI6 in the Δmcc mutant strain restored 15-ADON production. A combination of cellophane breach assays and pathogenicity experiments on wheat demonstrated that disrupting the leucine metabolic pathway significantly reduced disease. These findings suggest a complex interaction between one of the primary metabolic pathways with a global regulator of mycotoxin biosynthesis and virulence in F. graminearum.
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Affiliation(s)
- Rajagopal Subramaniam
- Agriculture and Agri-Food Canada, Eastern Cereal Research Centre, Ottawa, K1A0C6, Canada
| | - Swara Narayanan
- Agriculture and Agri-Food Canada, Eastern Cereal Research Centre, Ottawa, K1A0C6, Canada
| | - Sean Walkowiak
- Agriculture and Agri-Food Canada, Eastern Cereal Research Centre, Ottawa, K1A0C6, Canada.,Department of Biology, Carleton University, 1125 Colonel By, Ottawa, K1S5B6, Canada
| | - Li Wang
- Agriculture and Agri-Food Canada, Eastern Cereal Research Centre, Ottawa, K1A0C6, Canada
| | - Manisha Joshi
- Agriculture and Agri-Food Canada, Eastern Cereal Research Centre, Ottawa, K1A0C6, Canada
| | - Hélène Rocheleau
- Agriculture and Agri-Food Canada, Eastern Cereal Research Centre, Ottawa, K1A0C6, Canada
| | - Thérèse Ouellet
- Agriculture and Agri-Food Canada, Eastern Cereal Research Centre, Ottawa, K1A0C6, Canada
| | - Linda J Harris
- Agriculture and Agri-Food Canada, Eastern Cereal Research Centre, Ottawa, K1A0C6, Canada
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Furukawa T, Sakamoto N, Suzuki M, Kimura M, Nagasawa H, Sakuda S. Precocene II, a Trichothecene Production Inhibitor, Binds to Voltage-Dependent Anion Channel and Increases the Superoxide Level in Mitochondria of Fusarium graminearum. PLoS One 2015; 10:e0135031. [PMID: 26248339 PMCID: PMC4527739 DOI: 10.1371/journal.pone.0135031] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2015] [Accepted: 07/16/2015] [Indexed: 02/07/2023] Open
Abstract
Precocene II, a constituent of essential oils, shows antijuvenile hormone activity in insects and inhibits trichothecene production in fungi. We investigated the molecular mechanism by which precocene II inhibits trichothecene production in Fusarium graminearum, the main causal agent of Fusarium head blight and trichothecene contamination in grains. Voltage-dependent anion channel (VDAC), a mitochondrial outer membrane protein, was identified as the precocene II-binding protein by an affinity magnetic bead method. Precocene II increased the superoxide level in mitochondria as well as the amount of oxidized mitochondrial proteins. Ascorbic acid, glutathione, and α-tocopherol promoted trichothecene production by the fungus. These antioxidants compensated for the inhibitory activity of precocene II on trichothecene production. These results suggest that the binding of precocene II to VDAC may cause high superoxide levels in mitochondria, which leads to stopping of trichothecene production.
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Affiliation(s)
- Tomohiro Furukawa
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Naoko Sakamoto
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Michio Suzuki
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Makoto Kimura
- Department of Biological Mechanisms and Functions, Graduate School of Bioagricultural Sciences, Nagoya University, Aichi, Japan
| | - Hiromichi Nagasawa
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
| | - Shohei Sakuda
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
- * E-mail:
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77
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Son H, Park AR, Lim JY, Lee YW. Fss1 is involved in the regulation of anENA5homologue for sodium and lithium tolerance inFusarium graminearum. Environ Microbiol 2015; 17:2048-63. [DOI: 10.1111/1462-2920.12757] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2014] [Revised: 12/13/2014] [Accepted: 12/16/2014] [Indexed: 11/29/2022]
Affiliation(s)
- Hokyoung Son
- Department of Agricultural Biotechnology; Seoul National University; Seoul 151-921 Korea
- Center for Fungal Pathogenesis; Seoul National University; Seoul 151-921 Korea
| | - Ae Ran Park
- Department of Agricultural Biotechnology; Seoul National University; Seoul 151-921 Korea
- Center for Fungal Pathogenesis; Seoul National University; Seoul 151-921 Korea
| | - Jae Yun Lim
- Department of Agricultural Biotechnology; Seoul National University; Seoul 151-921 Korea
- Center for Fungal Pathogenesis; Seoul National University; Seoul 151-921 Korea
| | - Yin-Won Lee
- Department of Agricultural Biotechnology; Seoul National University; Seoul 151-921 Korea
- Center for Fungal Pathogenesis; Seoul National University; Seoul 151-921 Korea
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79
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Ravensdale M, Rocheleau H, Wang L, Nasmith C, Ouellet T, Subramaniam R. Components of priming-induced resistance to Fusarium head blight in wheat revealed by two distinct mutants of Fusarium graminearum. MOLECULAR PLANT PATHOLOGY 2014; 15:948-56. [PMID: 24751103 PMCID: PMC6638912 DOI: 10.1111/mpp.12145] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Two mutants (tri6Δ and noxABΔ) of the fungal pathogen Fusarium graminearum were assessed for their ability to prime immune responses in wheat (cv. Roblin) against challenge with pathogenic F. graminearum. Priming treatments generated Fusarium head blight (FHB)-resistant wheat phenotypes and reduced the accumulation of fungal mycotoxins in infected tissues. Microarray analysis identified 260 transcripts that were differentially expressed during the priming period. Expression changes were observed in genes associated with immune surveillance systems, signalling cascades, antimicrobial compound production, oxidative burst, secondary metabolism, and detoxification and transport. Specifically, genes related to jasmonate, gibberellin and ethylene biosynthesis exhibited differential expression during priming. In addition, the induction of the phenylpropanoid pathways that lead to flavonoid, coumarin and hydroxycinnamic acid amide accumulation was also observed. This study highlights the utility of nonpathogenic mutants to both elicit and delineate stages of defence responses in wheat.
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Affiliation(s)
- Michael Ravensdale
- Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, ON, Canada, K1A 0C6
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80
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The Fusarium graminearum genome reveals more secondary metabolite gene clusters and hints of horizontal gene transfer. PLoS One 2014; 9:e110311. [PMID: 25333987 PMCID: PMC4198257 DOI: 10.1371/journal.pone.0110311] [Citation(s) in RCA: 88] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2014] [Accepted: 09/11/2014] [Indexed: 01/07/2023] Open
Abstract
Fungal secondary metabolite biosynthesis genes are of major interest due to the pharmacological properties of their products (like mycotoxins and antibiotics). The genome of the plant pathogenic fungus Fusarium graminearum codes for a large number of candidate enzymes involved in secondary metabolite biosynthesis. However, the chemical nature of most enzymatic products of proteins encoded by putative secondary metabolism biosynthetic genes is largely unknown. Based on our analysis we present 67 gene clusters with significant enrichment of predicted secondary metabolism related enzymatic functions. 20 gene clusters with unknown metabolites exhibit strong gene expression correlation in planta and presumably play a role in virulence. Furthermore, the identification of conserved and over-represented putative transcription factor binding sites serves as additional evidence for cluster co-regulation. Orthologous cluster search provided insight into the evolution of secondary metabolism clusters. Some clusters are characteristic for the Fusarium phylum while others show evidence of horizontal gene transfer as orthologs can be found in representatives of the Botrytis or Cochliobolus lineage. The presented candidate clusters provide valuable targets for experimental examination.
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81
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Abstract
Fungi (Ascomycota and Basidiomycota) are prolific producers of structurally diverse terpenoid compounds. Classes of terpenoids identified in fungi include the sesqui-, di- and triterpenoids. Biosynthetic pathways and enzymes to terpenoids from each of these classes have been described. These typically involve the scaffold generating terpene synthases and cyclases, and scaffold tailoring enzymes such as e.g. cytochrome P450 monoxygenases, NAD(P)+ and flavin dependent oxidoreductases, and various group transferases that generate the final bioactive structures. The biosynthesis of several sesquiterpenoid mycotoxins and bioactive diterpenoids has been well-studied in Ascomycota (e.g. filamentous fungi). Little is known about the terpenoid biosynthetic pathways in Basidiomycota (e.g. mushroom forming fungi), although they produce a huge diversity of terpenoid natural products. Specifically, many trans-humulyl cation derived sesquiterpenoid natural products with potent bioactivities have been isolated. Biosynthetic gene clusters responsible for the production of trans-humulyl cation derived protoilludanes, and other sesquiterpenoids, can be rapidly identified by genome sequencing and bioinformatic methods. Genome mining combined with heterologous biosynthetic pathway refactoring has the potential to facilitate discovery and production of pharmaceutically relevant fungal terpenoids.
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Affiliation(s)
- Maureen B Quin
- University of Minnesota, Dept. of Biochemistry, Molecular Biology and Biophysics, 1479 Gortner Avenue, St. Paul, MN 55108, USA
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82
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de Castro PA, Chen C, de Almeida RSC, Freitas FZ, Bertolini MC, Morais ER, Brown NA, Ramalho LNZ, Hagiwara D, Mitchell TK, Goldman GH. ChIP-seq reveals a role for CrzA in the Aspergillus fumigatus high-osmolarity glycerol response (HOG) signalling pathway. Mol Microbiol 2014; 94:655-74. [PMID: 25196896 DOI: 10.1111/mmi.12785] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/03/2014] [Indexed: 12/28/2022]
Abstract
Aspergillus fumigatus is an opportunistic pathogen and allergen of mammals. Calcium signalling is essential for A. fumigatus pathogenicity and is regulated by the CrzA transcription factor. We used ChIP-seq (Chromatin Immunoprecipitation DNA sequencing) to explore CrzA gene targets in A. fumigatus. In total, 165 potential binding peaks including 102 directly regulated genes were identified, resulting in the prediction of the A[GT][CG]CA[AC][AG] CrzA-binding motif. The 102 CrzA putatively regulated genes exhibited a diverse array of functions. The phkB (Afu3g12530) histidine kinase and the sskB (Afu1g10940) MAP kinase kinase kinase of the HOG (high-osmolarity glycerol response) pathway were regulated by CrzA. Several members of the two-component system (TCS) and the HOG pathway were more sensitive to calcium. CrzA::GFP was translocated to the nucleus upon osmotic stress. CrzA is important for the phosphorylation of the SakA MAPK in response to osmotic shock. The ΔsskB was more sensitive to CaCl2 , NaCl, and paraquat stress, while being avirulent in a murine model of invasive pulmonary aspergillosis. The presence of CaCl2 and osmotic stresses resulted in synergistic inhibition of ΔcrzA and ΔsskB growth. These results suggest there is a genetic interaction between the A. fumigatus calcineurin-CrzA and HOG pathway that is essential for full virulence.
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Affiliation(s)
- Patrícia A de Castro
- Faculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, Brazil
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83
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Jiang C, Zhang S, Zhang Q, Tao Y, Wang C, Xu JR. FgSKN7 and FgATF1 have overlapping functions in ascosporogenesis, pathogenesis and stress responses in Fusarium graminearum. Environ Microbiol 2014; 17:1245-60. [PMID: 25040476 DOI: 10.1111/1462-2920.12561] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2014] [Accepted: 06/28/2014] [Indexed: 11/30/2022]
Abstract
Fusarium head blight caused by Fusarium graminearum is one of the most destructive diseases of wheat and barley. Deoxynivalenol (DON) produced by the pathogen is an important mycotoxins and virulence factor. Because oxidative burst is a common defense response and reactive oxygen species (ROS) induces DON production, in this study, we characterized functional relationships of three stress-related transcription factor genes FgAP1, FgATF1 and FgSKN7. Although all of them played a role in tolerance to oxidative stress, deletion of FgAP1 or FgATF1 had no significant effect on DON production. In contrast, Fgskn7 mutants were reduced in DON production and defective in H2 O2 -induced TRI gene expression. The Fgap1 mutant had no detectable phenotype other than increased sensitivity to H2 O2 and Fgap1 Fgatf1 and Fgap1 Fgskn7 mutants lacked additional or more severe phenotypes than the single mutants. The Fgatf1, but not Fgskn7, mutant was significantly reduced in virulence and delayed in ascospore release. The Fgskn7 Fgatf1 double mutant had more severe defects in growth, conidiation and virulence than the Fgatf1 or Fgskn7 mutant. Instead of producing four-celled ascospores, it formed eight small, single-celled ascospores in each ascus. Therefore, FgSKN7 and FgATF1 must have overlapping functions in intracellular ROS signalling for growth, development and pathogenesis in F. graminearum.
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Affiliation(s)
- Cong Jiang
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwestern A&F University, Yangling, Shaanxi, 712100, China; Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, 47907, USA
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Abstract
Mycotoxins are natural contaminants of food and feed products, posing a substantial health risk to humans and animals throughout the world. A plethora of filamentous fungi has been identified as mycotoxin producers and most of these fungal species belong to the genera Aspergillus, Fusarium, and Penicillium. A number of studies have been conducted to better understand the molecular mechanisms of biosynthesis of key mycotoxins and the regulatory cascades controlling toxigenesis. In many cases, the mycotoxin biosynthetic genes are clustered and regulated by one or more pathway-specific transcription factor(s). In addition, as biosynthesis of many secondary metabolites is coordinated with fungal growth and development, there are a number of upstream regulators affecting biosynthesis of mycotoxins in fungi. This review presents a concise summary of the regulation of mycotoxin biosynthesis, focusing on the roles of the upstream regulatory elements governing biosynthesis of aflatoxin and sterigmatocystin in Aspergillus.
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Affiliation(s)
| | - Jae-Hyuk Yu
- University of Wisconsin-Madison, Madison, Wisconsin, USA
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85
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Perlin MH, Andrews J, San Toh S. Essential Letters in the Fungal Alphabet. ADVANCES IN GENETICS 2014; 85:201-53. [DOI: 10.1016/b978-0-12-800271-1.00004-4] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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86
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Song XS, Li HP, Zhang JB, Song B, Huang T, Du XM, Gong AD, Liu YK, Feng YN, Agboola RS, Liao YC. Trehalose 6-phosphate phosphatase is required for development, virulence and mycotoxin biosynthesis apart from trehalose biosynthesis in Fusarium graminearum. Fungal Genet Biol 2013; 63:24-41. [PMID: 24291007 DOI: 10.1016/j.fgb.2013.11.005] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2013] [Revised: 11/19/2013] [Accepted: 11/20/2013] [Indexed: 12/11/2022]
Abstract
Trehalose 6-phosphate synthase (TPS1) and trehalose 6-phosphate phosphatase (TPS2) are required for trehalose biosynthesis in yeast and filamentous fungi, including Fusarium graminearum. Three null mutants Δtps1, Δtps2 and Δtps1-Δtps2, each carrying either a single deletion of TPS1 or TPS2 or a double deletion of TPS1-TPS2, were generated from a toxigenic F. graminearum strain and were not able to synthesize trehalose. In contrast to its reported function in yeasts and filamentous fungi, TPS1 appeared dispensable for development and virulence. However, deletion of TPS2 abolished sporulation and sexual reproduction; it also altered cell polarity and ultrastructure of the cell wall in association with reduced chitin biosynthesis. The cell polarity alteration was exhibited as reduced apical growth and increased lateral growth and branching with increased hyphal and cell wall widths. Moreover, the TPS2-deficient strain displayed abnormal septum development and nucleus distribution in its conidia and vegetative hyphae. The Δtps2 mutant also had 62% lower mycelial growth on potato dextrose agar and 99% lower virulence on wheat compared with the wild-type. The Δtps1, Δtps2 and Δtps1-Δtps2 mutants synthesized over 3.08-, 7.09- and 2.47-fold less mycotoxins, respectively, on rice culture compared with the wild-type. Comparative transcriptome analysis revealed that the Δtps1, Δtps2 and Δtps1-Δtps2 mutants had 486, 1885 and 146 genotype-specific genes, respectively, with significantly changed expression profiles compared with the wild-type. Further dissection of this pathway will provide new insights into regulation of fungal development, virulence and trichothecene biosynthesis.
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Affiliation(s)
- Xiu-Shi Song
- Molecular Biotechnology Laboratory of Triticeae Crops, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
| | - He-Ping Li
- Molecular Biotechnology Laboratory of Triticeae Crops, Huazhong Agricultural University, Wuhan 430070, People's Republic of China; College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
| | - Jing-Bo Zhang
- Molecular Biotechnology Laboratory of Triticeae Crops, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
| | - Bo Song
- Molecular Biotechnology Laboratory of Triticeae Crops, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
| | - Tao Huang
- Molecular Biotechnology Laboratory of Triticeae Crops, Huazhong Agricultural University, Wuhan 430070, People's Republic of China; College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
| | - Xiao-Min Du
- Molecular Biotechnology Laboratory of Triticeae Crops, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
| | - An-Dong Gong
- Molecular Biotechnology Laboratory of Triticeae Crops, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
| | - Yi-Ke Liu
- Molecular Biotechnology Laboratory of Triticeae Crops, Huazhong Agricultural University, Wuhan 430070, People's Republic of China; College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
| | - Yan-Ni Feng
- Molecular Biotechnology Laboratory of Triticeae Crops, Huazhong Agricultural University, Wuhan 430070, People's Republic of China; College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
| | - Rebecca S Agboola
- Molecular Biotechnology Laboratory of Triticeae Crops, Huazhong Agricultural University, Wuhan 430070, People's Republic of China
| | - Yu-Cai Liao
- Molecular Biotechnology Laboratory of Triticeae Crops, Huazhong Agricultural University, Wuhan 430070, People's Republic of China; College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, People's Republic of China; National Center of Plant Gene Research (Wuhan), Wuhan 430070, People's Republic of China.
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87
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Giese H, Sondergaard TE, Sørensen JL. The AreA transcription factor in Fusarium graminearum regulates the use of some nonpreferred nitrogen sources and secondary metabolite production. Fungal Biol 2013; 117:814-21. [DOI: 10.1016/j.funbio.2013.10.006] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2013] [Revised: 09/26/2013] [Accepted: 10/18/2013] [Indexed: 01/06/2023]
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88
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Lawler K, Hammond-Kosack K, Brazma A, Coulson RMR. Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum. BMC SYSTEMS BIOLOGY 2013; 7:52. [PMID: 23805903 PMCID: PMC3703260 DOI: 10.1186/1752-0509-7-52] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2012] [Accepted: 06/18/2013] [Indexed: 11/16/2022]
Abstract
BACKGROUND Genes for the production of a broad range of fungal secondary metabolites are frequently colinear. The prevalence of such gene clusters was systematically examined across the genome of the cereal pathogen Fusarium graminearum. The topological structure of transcriptional networks was also examined to investigate control mechanisms for mycotoxin biosynthesis and other processes. RESULTS The genes associated with transcriptional processes were identified, and the genomic location of transcription-associated proteins (TAPs) analyzed in conjunction with the locations of genes exhibiting similar expression patterns. Highly conserved TAPs reside in regions of chromosomes with very low or no recombination, contrasting with putative regulator genes. Co-expression group profiles were used to define positionally clustered genes and a number of members of these clusters encode proteins participating in secondary metabolism. Gene expression profiles suggest there is an abundance of condition-specific transcriptional regulation. Analysis of the promoter regions of co-expressed genes showed enrichment for conserved DNA-sequence motifs. Potential global transcription factors recognising these motifs contain distinct sets of DNA-binding domains (DBDs) from those present in local regulators. CONCLUSIONS Proteins associated with basal transcriptional functions are encoded by genes enriched in regions of the genome with low recombination. Systematic searches revealed dispersed and compact clusters of co-expressed genes, often containing a transcription factor, and typically containing genes involved in biosynthetic pathways. Transcriptional networks exhibit a layered structure in which the position in the hierarchy of a regulator is closely linked to the DBD structural class.
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Affiliation(s)
- Katherine Lawler
- European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK
- Institute for Mathematical and Molecular Biomedicine, King’s College London, Hodgkin Building, London SE1 1UL, UK
| | - Kim Hammond-Kosack
- Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts AL5 2JQ, UK
| | - Alvis Brazma
- European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK
| | - Richard MR Coulson
- European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge CB10 1SD, UK
- Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK
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89
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Fan J, Urban M, Parker JE, Brewer HC, Kelly SL, Hammond-Kosack KE, Fraaije BA, Liu X, Cools HJ. Characterization of the sterol 14α-demethylases of Fusarium graminearum identifies a novel genus-specific CYP51 function. THE NEW PHYTOLOGIST 2013; 198:821-835. [PMID: 23442154 DOI: 10.1111/nph.12193] [Citation(s) in RCA: 112] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/19/2012] [Accepted: 01/15/2013] [Indexed: 05/26/2023]
Abstract
CYP51 encodes the cytochrome P450 sterol 14α-demethylase, an enzyme essential for sterol biosynthesis and the target of azole fungicides. In Fusarium species, including pathogens of humans and plants, three CYP51 paralogues have been identified with one unique to the genus. Currently, the functions of these three genes and the rationale for their conservation within the genus Fusarium are unknown. Three Fusarium graminearum CYP51s (FgCYP51s) were heterologously expressed in Saccharomyces cerevisiae. Single and double FgCYP51 deletion mutants were generated and the functions of the FgCYP51s were characterized in vitro and in planta. FgCYP51A and FgCYP51B can complement yeast CYP51 function, whereas FgCYP51C cannot. FgCYP51A deletion increases the sensitivity of F. graminearum to the tested azoles. In ΔFgCYP51B and ΔFgCYP51BC mutants, ascospore formation is blocked, and eburicol and two additional 14-methylated sterols accumulate. FgCYP51C deletion reduces virulence on host wheat ears. FgCYP51B encodes the enzyme primarily responsible for sterol 14α-demethylation, and plays an essential role in ascospore formation. FgCYP51A encodes an additional sterol 14α-demethylase, induced on ergosterol depletion and responsible for the intrinsic variation in azole sensitivity. FgCYP51C does not encode a sterol 14α-demethylase, but is required for full virulence on host wheat ears. This is the first example of the functional diversification of a fungal CYP51.
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Affiliation(s)
- Jieru Fan
- Department of Plant Pathology, China Agricultural University, Beijing, 100193, China
- Department of Biological Chemistry and Crop Protection, Rothamsted Research, Harpenden, AL5 2JQ, UK
| | - Martin Urban
- Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, AL5 2JQ, UK
| | - Josie E Parker
- Institute of Life Science and College of Medicine, Swansea University, Swansea, SA2 8PP, UK
| | - Helen C Brewer
- Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, AL5 2JQ, UK
| | - Steven L Kelly
- Institute of Life Science and College of Medicine, Swansea University, Swansea, SA2 8PP, UK
| | - Kim E Hammond-Kosack
- Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, AL5 2JQ, UK
| | - Bart A Fraaije
- Department of Biological Chemistry and Crop Protection, Rothamsted Research, Harpenden, AL5 2JQ, UK
| | - Xili Liu
- Department of Plant Pathology, China Agricultural University, Beijing, 100193, China
| | - Hans J Cools
- Department of Biological Chemistry and Crop Protection, Rothamsted Research, Harpenden, AL5 2JQ, UK
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90
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Rampitsch C, Day J, Subramaniam R, Walkowiak S. Comparative secretome analysis of Fusarium graminearum and two of its non-pathogenic mutants upon deoxynivalenol induction in vitro. Proteomics 2013; 13:1913-21. [PMID: 23512867 DOI: 10.1002/pmic.201200446] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2012] [Revised: 12/20/2012] [Accepted: 02/07/2013] [Indexed: 12/23/2022]
Abstract
To understand early events in plant-pathogen interactions, it is necessary to explore the pathogen secretome to identify secreted proteins that help orchestrate pathology. The secretome can be obtained from pathogens grown in vitro, and then characterized using standard proteomic approaches based on protein extraction and subsequent identification of tryptic peptides by LC-MS. A subset of the secretome is composed of proteins whose presence is required to initiate infection and their removal from the secretome would result in pathogens with reduced or no virulence. We present here comparative secretome from Fusarium graminearum. This filamentous fungus causes Fusarium head blight on wheat, a serious cereal disease found in many cereal-growing regions. Affected grain is contaminated with mycotoxins and cannot be used for food or feed. We used label-free quantitative MS to compare the secretomes of wild-type with two nonpathogenic deletion mutants of F. graminearum, Δtri6, and Δtri10. These mutations in mycotoxin-regulating transcription factors revealed a subset of 29 proteins whose relative abundance was affected in their secretomes, as measured by spectral counting. Proteins that decreased in abundance are potential candidate virulence factors and these included cell wall-degrading enzymes, metabolic enzymes, pathogenesis-related proteins, and proteins of unknown function.
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Affiliation(s)
- Christof Rampitsch
- Department of Molecular Genetics, Cereal Research Centre, Agriculture and Agrifood Canada, Winnipeg, MB, Canada.
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91
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Simon A, Dalmais B, Morgant G, Viaud M. Screening of a Botrytis cinerea one-hybrid library reveals a Cys2His2 transcription factor involved in the regulation of secondary metabolism gene clusters. Fungal Genet Biol 2013; 52:9-19. [PMID: 23396263 DOI: 10.1016/j.fgb.2013.01.006] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2012] [Revised: 01/16/2013] [Accepted: 01/18/2013] [Indexed: 11/25/2022]
Abstract
Botrytis cinerea, the grey mould fungus, secretes non-host-specific phytotoxins that kill the cells of many plant species. Phytotoxic assays performed about ten years ago, have highlighted the role in the infection mechanism of one of these secondary metabolites, the sesquiterpene botrydial. We recently showed that BcBOT1 to BcBOT5 genes, which are required for botrydial biosynthesis, are organised into a physical cluster. However, this cluster includes no gene encoding a transcription factor (TF) that might specifically coregulate the expression of BcBOT genes. To identify which TF(s) are implicated in the regulation of this cluster and thereby to decipher DNA-protein interactions in the phytopathogenic fungus B. cinerea, we developed a strategy based on the yeast one-hybrid (Y1H) method. In this study, a Y1H library was generated with the TFs predicted from complete genome sequencing. The screening of this library revealed an interaction between a promoter of the botrydial biosynthesis gene cluster and a new Cys2His2 zinc finger TF, that we called BcYOH1. Inactivation of the BcYOH1 gene and expression analyses demonstrated the involvement of this TF in regulating expression of the botrydial biosynthesis gene cluster. Furthermore, whole-transcriptome analysis suggested that BcYOH1 might act as a global transcriptional regulator of phytotoxin and other secondary metabolism gene clusters, and of genes involved in carbohydrate metabolism, transport, virulence and detoxification mechanisms.
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Affiliation(s)
- Adeline Simon
- UR1290 BIOGER-CPP, INRA, Avenue Lucien Brétignières, 78850 Thiverval-Grignon, France.
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92
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Pasquali M, Serchi T, Renaut J, Hoffmann L, Bohn T. 2D difference gel electrophoresis reference map of a Fusarium graminearum nivalenol producing strain. Electrophoresis 2013; 34:505-9. [PMID: 23172383 DOI: 10.1002/elps.201200256] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2012] [Revised: 10/03/2012] [Accepted: 10/11/2012] [Indexed: 11/12/2022]
Abstract
Fusarium graminearum is widely studied as a model for toxin production among plant pathogenic fungi. A 2D DIGE reference map for the nivalenol-producing strain 453 was established. Based on a whole protein extract, all reproducible spots were systematically picked and analyzed by MALDI-TOF/TOF, leading to the identification of 1102 protein species. The obtained map contributes to the annotation of the genome by identifying previously nondescribed hypothetical proteins and will serve as a reference for future studies aiming at deciphering F. graminearum biology and chemotype diversity.
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Affiliation(s)
- Matias Pasquali
- Centre de Recherche Public-Gabriel Lippmann, Belvaux, Luxembourg
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93
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Woloshuk CP, Shim WB. Aflatoxins, fumonisins, and trichothecenes: a convergence of knowledge. FEMS Microbiol Rev 2012; 37:94-109. [PMID: 23078349 DOI: 10.1111/1574-6976.12009] [Citation(s) in RCA: 113] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2012] [Revised: 09/27/2012] [Accepted: 10/15/2012] [Indexed: 01/03/2023] Open
Abstract
Plant pathogenic fungi Aspergillus flavus, Fusarium verticillioides, and Fusarium graminearum infect seeds of the most important food and feed crops, including maize, wheat, and barley. More importantly, these fungi produce aflatoxins, fumonisins, and trichothecenes, respectively, which threaten health and food security worldwide. In this review, we examine the molecular mechanisms and environmental factors that regulate mycotoxin biosynthesis in each fungus, and discuss the similarities and differences in the collective body of knowledge. Whole-genome sequences are available for these fungi, providing reference databases for genomic, transcriptomic, and proteomic analyses. It is well recognized that genes responsible for mycotoxin biosynthesis are organized in clusters. However, recent research has documented the intricate transcriptional and epigenetic regulation that affects these gene clusters. Significantly, molecular networks that respond to environmental factors, namely nitrogen, carbon, and pH, are connected to components regulating mycotoxin production. Furthermore, the developmental status of seeds and specific tissue types exert conditional influences during fungal colonization. A comparison of the three distinct mycotoxin groups provides insight into new areas for research collaborations that will lead to innovative strategies to control mycotoxin contamination of grain.
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Affiliation(s)
- Charles P Woloshuk
- Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA.
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94
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FgVELB is associated with vegetative differentiation, secondary metabolism and virulence in Fusarium graminearum. Fungal Genet Biol 2012; 49:653-62. [PMID: 22713714 DOI: 10.1016/j.fgb.2012.06.005] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2012] [Revised: 06/03/2012] [Accepted: 06/10/2012] [Indexed: 12/22/2022]
Abstract
The velvet complex containing VeA, VelB and LaeA has been showed to play critical roles in the regulation of secondary metabolism and diverse cellular processes in Aspergillus spp. In this study, we identified FgVelB, a homolog of Aspergillus nidulans VelB, from Fusarium graminearum using the BLASTP program. Disruption of FgVELB gene led to several phenotypic defects, including suppression of aerial hyphae formation, reduced hyphal hydrophobicity and highly increased conidiation. The mutant showed increased resistance to osmotic stress and cell wall-damaging agents, which may be related to a high level of glycerol accumulation in the mutant. Additionally, the mutant exhibited increased sensitivity to the phenylpyrrole fungicide fludioxonil. Ultrastructural and histochemical analyses revealed that conidia of FgVELB deletion mutant contained numerous lipid droplets. Pathogenicity assays showed FgVELB deletion mutant was impaired in virulence on flowering wheat head, which is consistent with the observation that FgVelB is involved in the regulation of deoxynivalenol biosynthesis in F. graminearum. All of the defects were restored by genetic complementation of the mutant with wild-type FgVELB gene. Yeast two hybrid assays showed that FgVelB does not interact with FgVeA. Taken together, results of this study indicated that FgVelB plays a critical role in the regulation of various cellular processes in F. graminearum.
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