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For: Albe KR, Butler MH, Wright BE. Cellular concentrations of enzymes and their substrates. J Theor Biol 1990;143:163-95. [PMID: 2200929 DOI: 10.1016/s0022-5193(05)80266-8] [Citation(s) in RCA: 205] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Number Cited by Other Article(s)
101
Virant-Klun I, Leicht S, Hughes C, Krijgsveld J. Identification of Maturation-Specific Proteins by Single-Cell Proteomics of Human Oocytes. Mol Cell Proteomics 2016;15:2616-27. [PMID: 27215607 DOI: 10.1074/mcp.m115.056887] [Citation(s) in RCA: 143] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2015] [Indexed: 12/25/2022]  Open
102
Fan TWM, Lane AN. Applications of NMR spectroscopy to systems biochemistry. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2016;92-93:18-53. [PMID: 26952191 PMCID: PMC4850081 DOI: 10.1016/j.pnmrs.2016.01.005] [Citation(s) in RCA: 128] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2015] [Revised: 01/26/2016] [Accepted: 01/28/2016] [Indexed: 05/05/2023]
103
Gruber R, Horovitz A. Allosteric Mechanisms in Chaperonin Machines. Chem Rev 2016;116:6588-606. [PMID: 26726755 DOI: 10.1021/acs.chemrev.5b00556] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
104
Li G, Zhang C, Xing XH. A kinetic model for analysis of physical tunnels in sequentially acting enzymes with direct proximity channeling. Biochem Eng J 2016. [DOI: 10.1016/j.bej.2015.09.020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
105
Adolfsen KJ, Brynildsen MP. A Kinetic Platform to Determine the Fate of Hydrogen Peroxide in Escherichia coli. PLoS Comput Biol 2015;11:e1004562. [PMID: 26545295 PMCID: PMC4636272 DOI: 10.1371/journal.pcbi.1004562] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2015] [Accepted: 09/18/2015] [Indexed: 11/29/2022]  Open
106
Gameiro D, Pérez-Pérez M, Pérez-Rodríguez G, Monteiro G, Azevedo NF, Lourenço A. Computational resources and strategies to construct single-molecule metabolic models of microbial cells. Brief Bioinform 2015;17:863-76. [DOI: 10.1093/bib/bbv096] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2015] [Indexed: 11/12/2022]  Open
107
McCormick SP, Moore MJ, Lindahl PA. Detection of Labile Low-Molecular-Mass Transition Metal Complexes in Mitochondria. Biochemistry 2015;54:3442-53. [PMID: 26018429 DOI: 10.1021/bi5015437] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
108
Sec17 can trigger fusion of trans-SNARE paired membranes without Sec18. Proc Natl Acad Sci U S A 2015;112:E2290-7. [PMID: 25902545 DOI: 10.1073/pnas.1506409112] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
109
Hudson DA, Gannon SA, Thorpe C. Oxidative protein folding: from thiol-disulfide exchange reactions to the redox poise of the endoplasmic reticulum. Free Radic Biol Med 2015;80:171-82. [PMID: 25091901 PMCID: PMC4312752 DOI: 10.1016/j.freeradbiomed.2014.07.037] [Citation(s) in RCA: 116] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/31/2014] [Accepted: 07/23/2014] [Indexed: 12/21/2022]
110
Doherty K, Meere M, Piiroinen PT. Some mathematical models of intermolecular autophosphorylation. J Theor Biol 2015;370:27-38. [PMID: 25636493 DOI: 10.1016/j.jtbi.2015.01.015] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2014] [Revised: 01/08/2015] [Accepted: 01/15/2015] [Indexed: 11/26/2022]
111
Woehrer SL, Aronica L, Suhren JH, Busch CJL, Noto T, Mochizuki K. A Tetrahymena Hsp90 co-chaperone promotes siRNA loading by ATP-dependent and ATP-independent mechanisms. EMBO J 2015;34:559-77. [PMID: 25588944 PMCID: PMC4331008 DOI: 10.15252/embj.201490062] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
112
Paget CM, Schwartz JM, Delneri D. Environmental systems biology of cold-tolerant phenotype in Saccharomyces species adapted to grow at different temperatures. Mol Ecol 2014;23:5241-57. [PMID: 25243355 PMCID: PMC4283049 DOI: 10.1111/mec.12930] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2013] [Revised: 09/03/2014] [Accepted: 09/15/2014] [Indexed: 12/01/2022]
113
Goncalves RLS, Quinlan CL, Perevoshchikova IV, Hey-Mogensen M, Brand MD. Sites of superoxide and hydrogen peroxide production by muscle mitochondria assessed ex vivo under conditions mimicking rest and exercise. J Biol Chem 2014;290:209-27. [PMID: 25389297 DOI: 10.1074/jbc.m114.619072] [Citation(s) in RCA: 245] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]  Open
114
Engelhard C, Wang X, Robles D, Moldt J, Essen LO, Batschauer A, Bittl R, Ahmad M. Cellular metabolites enhance the light sensitivity of Arabidopsis cryptochrome through alternate electron transfer pathways. THE PLANT CELL 2014;26:4519-31. [PMID: 25428980 PMCID: PMC4277212 DOI: 10.1105/tpc.114.129809] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
115
The structural and functional coordination of glycolytic enzymes in muscle: evidence of a metabolon? BIOLOGY 2014;3:623-44. [PMID: 25247275 PMCID: PMC4192631 DOI: 10.3390/biology3030623] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/14/2014] [Revised: 09/05/2014] [Accepted: 09/08/2014] [Indexed: 12/22/2022]
116
Induced Self-Assembly of Platinum(II) Alkynyl Complexes through Specific Interactions between Citrate and Guanidinium for Proof-of-Principle Detection of Citrate and an Assay of Citrate Lyase. Chemistry 2014;20:13016-27. [DOI: 10.1002/chem.201402137] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2014] [Indexed: 01/26/2023]
117
Theory on the dynamics of oscillatory loops in the transcription factor networks. PLoS One 2014;9:e104328. [PMID: 25111803 PMCID: PMC4128676 DOI: 10.1371/journal.pone.0104328] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2013] [Accepted: 07/11/2014] [Indexed: 11/19/2022]  Open
118
Mulukutla BC, Yongky A, Daoutidis P, Hu WS. Bistability in glycolysis pathway as a physiological switch in energy metabolism. PLoS One 2014;9:e98756. [PMID: 24911170 PMCID: PMC4049617 DOI: 10.1371/journal.pone.0098756] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2014] [Accepted: 05/07/2014] [Indexed: 12/13/2022]  Open
119
Micheloni A, Orsi G, De Maria C, Vozzi G. ADMET: ADipocyte METabolism mathematical model. Comput Methods Biomech Biomed Engin 2014;18:1386-91. [DOI: 10.1080/10255842.2014.908855] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
120
Shin M, Bryant JD, Momb J, Appling DR. Mitochondrial MTHFD2L is a dual redox cofactor-specific methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase expressed in both adult and embryonic tissues. J Biol Chem 2014;289:15507-17. [PMID: 24733394 DOI: 10.1074/jbc.m114.555573] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
121
Noel A, Cheung KC, Schober R. Improving Receiver Performance of Diffusive Molecular Communication With Enzymes. IEEE Trans Nanobioscience 2014;13:31-43. [DOI: 10.1109/tnb.2013.2295546] [Citation(s) in RCA: 206] [Impact Index Per Article: 18.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
122
Moreno-Sánchez R, Marín-Hernández A, Saavedra E, Pardo JP, Ralph SJ, Rodríguez-Enríquez S. Who controls the ATP supply in cancer cells? Biochemistry lessons to understand cancer energy metabolism. Int J Biochem Cell Biol 2014;50:10-23. [PMID: 24513530 DOI: 10.1016/j.biocel.2014.01.025] [Citation(s) in RCA: 147] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2013] [Revised: 01/21/2014] [Accepted: 01/26/2014] [Indexed: 11/17/2022]
123
Regulatory and functional diversity of methylmercaptopropionate coenzyme A ligases from the dimethylsulfoniopropionate demethylation pathway in Ruegeria pomeroyi DSS-3 and other proteobacteria. J Bacteriol 2014;196:1275-85. [PMID: 24443527 DOI: 10.1128/jb.00026-14] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
124
González-García RA, Garcia-Peña EI, Salgado-Manjarrez E, Aranda-Barradas JS. Metabolic flux distribution and thermodynamic analysis of green fluorescent protein production in recombinant Escherichia coli: The effect of carbon source and CO 2 partial pressure. BIOTECHNOL BIOPROC E 2014. [DOI: 10.1007/s12257-013-0277-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
125
Analysis of Chinese hamster ovary cell metabolism through a combined computational and experimental approach. Cytotechnology 2013;66:945-66. [PMID: 24292563 DOI: 10.1007/s10616-013-9648-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2013] [Accepted: 09/20/2013] [Indexed: 01/22/2023]  Open
126
Milo R. What is the total number of protein molecules per cell volume? A call to rethink some published values. Bioessays 2013;35:1050-5. [PMID: 24114984 PMCID: PMC3910158 DOI: 10.1002/bies.201300066] [Citation(s) in RCA: 390] [Impact Index Per Article: 32.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
127
Finka A, Goloubinoff P. Proteomic data from human cell cultures refine mechanisms of chaperone-mediated protein homeostasis. Cell Stress Chaperones 2013;18:591-605. [PMID: 23430704 PMCID: PMC3745260 DOI: 10.1007/s12192-013-0413-3] [Citation(s) in RCA: 161] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2013] [Revised: 02/06/2013] [Accepted: 02/07/2013] [Indexed: 10/27/2022]  Open
128
Chakrabarti A, Miskovic L, Soh KC, Hatzimanikatis V. Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints. Biotechnol J 2013;8:1043-57. [PMID: 23868566 DOI: 10.1002/biot.201300091] [Citation(s) in RCA: 109] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2013] [Revised: 06/07/2013] [Accepted: 07/16/2013] [Indexed: 11/12/2022]
129
Farelli JD, Gumbart JC, Akey IV, Hempstead A, Amyot W, Head JF, McKnight CJ, Isberg RR, Akey CW. IcmQ in the Type 4b secretion system contains an NAD+ binding domain. Structure 2013;21:1361-73. [PMID: 23850453 DOI: 10.1016/j.str.2013.05.017] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2013] [Revised: 05/06/2013] [Accepted: 05/26/2013] [Indexed: 12/23/2022]
130
Valvano G, Orsi G, Guzzardi MA, Vozzi F, Vozzi G. CREPE: mathematical model for crosstalking of endothelial cells and hepatocyte metabolism. IEEE Trans Biomed Eng 2013;61:224-30. [PMID: 23864152 DOI: 10.1109/tbme.2013.2272942] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
131
Honda Y, Kirimura K. Generation of circularly permuted fluorescent-protein-based indicators for in vitro and in vivo detection of citrate. PLoS One 2013;8:e64597. [PMID: 23717638 PMCID: PMC3661591 DOI: 10.1371/journal.pone.0064597] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2013] [Accepted: 04/15/2013] [Indexed: 11/30/2022]  Open
132
Metallo CM, Vander Heiden MG. Understanding metabolic regulation and its influence on cell physiology. Mol Cell 2013;49:388-98. [PMID: 23395269 DOI: 10.1016/j.molcel.2013.01.018] [Citation(s) in RCA: 207] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2011] [Revised: 11/25/2012] [Accepted: 01/03/2013] [Indexed: 12/13/2022]
133
Venditti V, Ghirlando R, Clore GM. Structural basis for enzyme I inhibition by α-ketoglutarate. ACS Chem Biol 2013;8:1232-40. [PMID: 23506042 PMCID: PMC3735840 DOI: 10.1021/cb400027q] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
134
Chen N, Koumpouras GC, Polizzi KM, Kontoravdi C. Genome-based kinetic modeling of cytosolic glucose metabolism in industrially relevant cell lines: Saccharomyces cerevisiae and Chinese hamster ovary cells. Bioprocess Biosyst Eng 2012;35:1023-33. [PMID: 22286123 DOI: 10.1007/s00449-012-0687-3] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2011] [Accepted: 01/13/2012] [Indexed: 01/23/2023]
135
Sarma U, Ghosh I. Different designs of kinase-phosphatase interactions and phosphatase sequestration shapes the robustness and signal flow in the MAPK cascade. BMC SYSTEMS BIOLOGY 2012;6:82. [PMID: 22748295 PMCID: PMC3508828 DOI: 10.1186/1752-0509-6-82] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/23/2012] [Accepted: 05/09/2012] [Indexed: 02/08/2023]
136
Moisset P, Vaisman D, Cintolesi A, Urrutia J, Rapaport I, Andrews B, Asenjo J. Continuous modeling of metabolic networks with gene regulation in yeast and in vivo determination of rate parameters. Biotechnol Bioeng 2012;109:2325-39. [DOI: 10.1002/bit.24503] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2011] [Revised: 03/13/2012] [Accepted: 03/14/2012] [Indexed: 11/12/2022]
137
Leonardi R, Subramanian C, Jackowski S, Rock CO. Cancer-associated isocitrate dehydrogenase mutations inactivate NADPH-dependent reductive carboxylation. J Biol Chem 2012;287:14615-20. [PMID: 22442146 DOI: 10.1074/jbc.c112.353946] [Citation(s) in RCA: 133] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
138
Zuris JA, Ali SS, Yeh H, Nguyen TA, Nechushtai R, Paddock ML, Jennings PA. NADPH inhibits [2Fe-2S] cluster protein transfer from diabetes drug target MitoNEET to an apo-acceptor protein. J Biol Chem 2012;287:11649-55. [PMID: 22351774 DOI: 10.1074/jbc.m111.319731] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
139
Voets IK, Trappe V, Schurtenberger P. Generic pathways to stability in concentrated protein mixtures. Phys Chem Chem Phys 2012;14:2929-33. [PMID: 22261790 DOI: 10.1039/c2cp22558a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
140
Saha S, Ghose S, Adhikari R, Dua A. Nonrenewal statistics in the catalytic activity of enzyme molecules at mesoscopic concentrations. PHYSICAL REVIEW LETTERS 2011;107:218301. [PMID: 22181931 DOI: 10.1103/physrevlett.107.218301] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2011] [Indexed: 05/31/2023]
141
Musset B, Cherny VV, DeCoursey TE. Strong glucose dependence of electron current in human monocytes. Am J Physiol Cell Physiol 2011;302:C286-95. [PMID: 22012327 DOI: 10.1152/ajpcell.00335.2011] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
142
Cossins BP, Jacobson MP, Guallar V. A new view of the bacterial cytosol environment. PLoS Comput Biol 2011;7:e1002066. [PMID: 21695225 PMCID: PMC3111478 DOI: 10.1371/journal.pcbi.1002066] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2010] [Accepted: 04/09/2011] [Indexed: 11/19/2022]  Open
143
Costa R, Rocha I, Ferreira E, Machado D. Critical perspective on the consequences of the limited availability of kinetic data in metabolic dynamic modelling. IET Syst Biol 2011;5:157-63. [DOI: 10.1049/iet-syb.2009.0058] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
144
Wolfenden R, Lewis CA, Yuan Y. Kinetic challenges facing oxalate, malonate, acetoacetate, and oxaloacetate decarboxylases. J Am Chem Soc 2011;133:5683-5. [PMID: 21434608 DOI: 10.1021/ja111457h] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
145
Watson PY, Fedor MJ. The glmS riboswitch integrates signals from activating and inhibitory metabolites in vivo. Nat Struct Mol Biol 2011;18:359-63. [PMID: 21317896 PMCID: PMC3075592 DOI: 10.1038/nsmb.1989] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2010] [Accepted: 11/25/2010] [Indexed: 12/20/2022]
146
Jin G, Reitman ZJ, Spasojevic I, Batinic-Haberle I, Yang J, Schmidt-Kittler O, Bigner DD, Yan H. 2-hydroxyglutarate production, but not dominant negative function, is conferred by glioma-derived NADP-dependent isocitrate dehydrogenase mutations. PLoS One 2011;6:e16812. [PMID: 21326614 PMCID: PMC3033901 DOI: 10.1371/journal.pone.0016812] [Citation(s) in RCA: 93] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2010] [Accepted: 01/03/2011] [Indexed: 11/18/2022]  Open
147
Orsi G, De Maria C, Guzzardi M, Vozzi F, Vozzi G. HEMETβ: improvement of hepatocyte metabolism mathematical model. Comput Methods Biomech Biomed Engin 2011;14:837-51. [DOI: 10.1080/10255842.2010.497145] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
148
Moehlenbrock MJ, Toby TK, Pelster LN, Minteer SD. Metabolon Catalysts: An Efficient Model for Multi-enzyme Cascades at Electrode Surfaces. ChemCatChem 2011. [DOI: 10.1002/cctc.201000384] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
149
Lubitz T, Schulz M, Klipp E, Liebermeister W. Parameter balancing in kinetic models of cell metabolism. J Phys Chem B 2010;114:16298-303. [PMID: 21038890 PMCID: PMC2999964 DOI: 10.1021/jp108764b] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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Jamshidi N, Palsson BØ. Mass action stoichiometric simulation models: incorporating kinetics and regulation into stoichiometric models. Biophys J 2010;98:175-85. [PMID: 20338839 DOI: 10.1016/j.bpj.2009.09.064] [Citation(s) in RCA: 84] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2009] [Revised: 08/30/2009] [Accepted: 09/22/2009] [Indexed: 01/28/2023]  Open
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