201
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Huang L, Wu DZ, Zhang GP. Advances in studies on ion transporters involved in salt tolerance and breeding crop cultivars with high salt tolerance. J Zhejiang Univ Sci B 2020; 21:426-441. [PMID: 32478490 PMCID: PMC7306632 DOI: 10.1631/jzus.b1900510] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Revised: 12/27/2019] [Accepted: 12/27/2019] [Indexed: 11/11/2022]
Abstract
Soil salinity is a global major abiotic stress threatening crop productivity. In salty conditions, plants may suffer from osmotic, ionic, and oxidative stresses, resulting in inhibition of growth and development. To deal with these stresses, plants have developed a series of tolerance mechanisms, including osmotic adjustment through accumulating compatible solutes in the cytoplasm, reactive oxygen species (ROS) scavenging through enhancing the activity of anti-oxidative enzymes, and Na+/K+ homeostasis regulation through controlling Na+ uptake and transportation. In this review, recent advances in studies of the mechanisms of salt tolerance in plants are described in relation to the ionome, transcriptome, proteome, and metabolome, and the main factor accounting for differences in salt tolerance among plant species or genotypes within a species is presented. We also discuss the application and roles of different breeding methodologies in developing salt-tolerant crop cultivars. In particular, we describe the advantages and perspectives of genome or gene editing in improving the salt tolerance of crops.
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202
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Implications on food production of the changing water cycle in the Vietnamese Mekong Delta. Glob Ecol Conserv 2020. [DOI: 10.1016/j.gecco.2020.e00989] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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203
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do Amaral MN, Arge LWP, Auler PA, Rossatto T, Milech C, Magalhães AMD, Braga EJB. Long-term transcriptional memory in rice plants submitted to salt shock. PLANTA 2020; 251:111. [PMID: 32474838 DOI: 10.1007/s00425-020-03397-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2020] [Accepted: 04/29/2020] [Indexed: 06/11/2023]
Abstract
A first salt shock event alters transcriptional and physiological responses to a second event, being possible to identify 26 genes associated with long-term memory. Soil salinity significantly affects rice cultivation, resulting in large losses in growth and productivity. Studies report that a disturbing event can prepare the plant for a subsequent event through memory acquisition, involving physiological and molecular processes. Therefore, genes that provide altered responses in subsequent events define a category known as "memory genes". In this work, the RNA-sequencing (RNA-Seq) technique was used to analyse the transcriptional profile of rice plants subjected to different salt shock events and to characterise genes associated with long-term memory. Plants subjected to recurrent salt shock showed differences in stomatal conductance, chlorophyll index, electrolyte leakage, and the number of differentially expressed genes (DEGs), and they had lower Na+/K+ ratios than plants that experienced only one stress event. Additionally, the mammalian target of rapamycin (mTOR) pathways, and carbohydrate and amino acid-associated pathways were altered under all conditions. Memory genes can be classified according to their responses during the first event (+ or -) and the second shock event (+ or -), being possible to observe a larger number of transcripts for groups [+ /-] and [-/ +], genes characterised as "revised response." This is the first long-term transcriptional memory study in rice plants under salt shock, providing new insights into the process of plant memory acquisition.
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Affiliation(s)
- Marcelo N do Amaral
- Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil.
| | - Luis Willian P Arge
- Laboratory of Molecular Genetics and Plant Biotechnology, CCS Institute of Biology, Federal University of Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | - Priscila A Auler
- Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil
| | - Tatiana Rossatto
- Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil
| | - Cristini Milech
- Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil
| | | | - Eugenia Jacira B Braga
- Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil
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204
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Houston K, Qiu J, Wege S, Hrmova M, Oakey H, Qu Y, Smith P, Situmorang A, Macaulay M, Flis P, Bayer M, Roy S, Halpin C, Russell J, Schreiber M, Byrt C, Gilliham M, Salt DE, Waugh R. Barley sodium content is regulated by natural variants of the Na + transporter HvHKT1;5. Commun Biol 2020; 3:258. [PMID: 32444849 PMCID: PMC7244711 DOI: 10.1038/s42003-020-0990-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 04/28/2020] [Indexed: 12/04/2022] Open
Abstract
During plant growth, sodium (Na+) in the soil is transported via the xylem from the root to the shoot. While excess Na+ is toxic to most plants, non-toxic concentrations have been shown to improve crop yields under certain conditions, such as when soil K+ is low. We quantified grain Na+ across a barley genome-wide association study panel grown under non-saline conditions and identified variants of a Class 1 HIGH-AFFINITY-POTASSIUM-TRANSPORTER (HvHKT1;5)-encoding gene responsible for Na+ content variation under these conditions. A leucine to proline substitution at position 189 (L189P) in HvHKT1;5 disturbs its characteristic plasma membrane localisation and disrupts Na+ transport. Under low and moderate soil Na+, genotypes containing HvHKT1:5P189 accumulate high concentrations of Na+ but exhibit no evidence of toxicity. As the frequency of HvHKT1:5P189 increases significantly in cultivated European germplasm, we cautiously speculate that this non-functional variant may enhance yield potential in non-saline environments, possibly by offsetting limitations of low available K+.
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Affiliation(s)
- Kelly Houston
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK
| | - Jiaen Qiu
- ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Stefanie Wege
- ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Maria Hrmova
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- School of Life Science, Huaiyin Normal University, 223300, Huaian, China
| | - Helena Oakey
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Yue Qu
- ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Pauline Smith
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK
| | - Apriadi Situmorang
- ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Malcolm Macaulay
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK
| | - Paulina Flis
- Future Food Beacon of Excellence and the School of Biosciences, University of Nottingham, Nottingham, NG7 2RD, UK
| | - Micha Bayer
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK
| | - Stuart Roy
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- ARC Industrial Transformation Research Hub for Wheat in a Hot Dry Climate, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
| | - Claire Halpin
- School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, Scotland, UK
| | - Joanne Russell
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK
| | - Miriam Schreiber
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK
| | - Caitlin Byrt
- ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia
- Research School of Biology, 46 Sullivans Creek Road, The Australian National University, Canberra, ACT, 2601, Australia
| | - Matt Gilliham
- ARC Centre of Excellence in Plant Energy Biology, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia.
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia.
| | - David E Salt
- Future Food Beacon of Excellence and the School of Biosciences, University of Nottingham, Nottingham, NG7 2RD, UK.
| | - Robbie Waugh
- Cell and Molecular Sciences, The James Hutton Institute, Errol Road Invergowrie, Dundee, DD2 5DA, Scotland, UK.
- School of Agriculture and Wine & Waite Research Institute, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia.
- School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, Scotland, UK.
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205
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Zhao C, Zhang H, Song C, Zhu JK, Shabala S. Mechanisms of Plant Responses and Adaptation to Soil Salinity. Innovation (N Y) 2020; 1:100017. [PMID: 34557705 PMCID: PMC8454569 DOI: 10.1016/j.xinn.2020.100017] [Citation(s) in RCA: 290] [Impact Index Per Article: 72.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
Soil salinity is a major environmental stress that restricts the growth and yield of crops. Understanding the physiological, metabolic, and biochemical responses of plants to salt stress and mining the salt tolerance-associated genetic resource in nature will be extremely important for us to cultivate salt-tolerant crops. In this review, we provide a comprehensive summary of the mechanisms of salt stress responses in plants, including salt stress-triggered physiological responses, oxidative stress, salt stress sensing and signaling pathways, organellar stress, ion homeostasis, hormonal and gene expression regulation, metabolic changes, as well as salt tolerance mechanisms in halophytes. Important questions regarding salt tolerance that need to be addressed in the future are discussed.
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Affiliation(s)
- Chunzhao Zhao
- Shanghai Center for Plant Stress Biology and CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng 475004, China
| | - Heng Zhang
- State Key Laboratory of Plant Molecular Genetics, Shanghai Center for Plant Stress Biology, Center of Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
| | - Chunpeng Song
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng 475004, China
| | - Jian-Kang Zhu
- Shanghai Center for Plant Stress Biology and CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China
- Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA
| | - Sergey Shabala
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS 7001, Australia
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206
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Zeng X, Zhang P, Wang Y, Qin C, Chen S, He W, Tao L, Tan Y, Gao D, Wang B, Chen Z, Chen W, Jiang YY, Chen YZ. CMAUP: a database of collective molecular activities of useful plants. Nucleic Acids Res 2020; 47:D1118-D1127. [PMID: 30357356 PMCID: PMC6324012 DOI: 10.1093/nar/gky965] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Accepted: 10/05/2018] [Indexed: 01/03/2023] Open
Abstract
The beneficial effects of functionally useful plants (e.g. medicinal and food plants) arise from the multi-target activities of multiple ingredients of these plants. The knowledge of the collective molecular activities of these plants facilitates mechanistic studies and expanded applications. A number of databases provide information about the effects and targets of various plants and ingredients. More comprehensive information is needed for broader classes of plants and for the landscapes of individual plant’s multiple targets, collective activities and regulated biological pathways, processes and diseases. We therefore developed a new database, Collective Molecular Activities of Useful Plants (CMAUP), to provide the collective landscapes of multiple targets (ChEMBL target classes) and activity levels (in 2D target-ingredient heatmap), and regulated gene ontologies (GO categories), biological pathways (KEGG categories) and diseases (ICD blocks) for 5645 plants (2567 medicinal, 170 food, 1567 edible, 3 agricultural and 119 garden plants) collected from or traditionally used in 153 countries and regions. These landscapes were derived from 47 645 plant ingredients active against 646 targets in 234 KEGG pathways associated with 2473 gene ontologies and 656 diseases. CMAUP (http://bidd2.nus.edu.sg/CMAUP/) is freely accessible and searchable by keywords, plant usage classes, species families, targets, KEGG pathways, gene ontologies, diseases (ICD code) and geographical locations.
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Affiliation(s)
- Xian Zeng
- The State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Biology, Tsinghua University Shenzhen Graduate School, Shenzhen Technology and Engineering Laboratory for Personalized Cancer Diagnostics and Therapeutics, Shenzhen Kivita Innovative Drug Discovery Institute, Guangdong 518055, P. R. China.,Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
| | - Peng Zhang
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
| | - Yali Wang
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
| | - Chu Qin
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
| | - Shangying Chen
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
| | - Weidong He
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
| | - Lin Tao
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore.,Zhejiang Key Laboratory of Gastro-intestinal Pathophysiology, Zhejiang Hospital of Traditional Chinese Medicine, Zhejiang Chinese Medical University, School of Medicine, Hangzhou Normal University, Hangzhou 310006, R. P. China
| | - Ying Tan
- The State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Biology, Tsinghua University Shenzhen Graduate School, Shenzhen Technology and Engineering Laboratory for Personalized Cancer Diagnostics and Therapeutics, Shenzhen Kivita Innovative Drug Discovery Institute, Guangdong 518055, P. R. China
| | - Dan Gao
- The State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Biology, Tsinghua University Shenzhen Graduate School, Shenzhen Technology and Engineering Laboratory for Personalized Cancer Diagnostics and Therapeutics, Shenzhen Kivita Innovative Drug Discovery Institute, Guangdong 518055, P. R. China
| | - Bohua Wang
- Key Lab of Agricultural Products Processing and Quality Control of Nanchang City, Jiangxi Agricultural University, Nanchang 330045, P. R. China.,College of Life and Environmental Sciences, Collaborative Innovation Center for Efficient and Health Production of Fisheries in Hunan Province, Hunan University of Arts and Science, Changde, Hunan 415000, P. R. China
| | - Zhe Chen
- Zhejiang Key Laboratory of Gastro-intestinal Pathophysiology, Zhejiang Hospital of Traditional Chinese Medicine, Zhejiang Chinese Medical University, School of Medicine, Hangzhou Normal University, Hangzhou 310006, R. P. China
| | - Weiping Chen
- Key Lab of Agricultural Products Processing and Quality Control of Nanchang City, Jiangxi Agricultural University, Nanchang 330045, P. R. China
| | - Yu Yang Jiang
- The State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Biology, Tsinghua University Shenzhen Graduate School, Shenzhen Technology and Engineering Laboratory for Personalized Cancer Diagnostics and Therapeutics, Shenzhen Kivita Innovative Drug Discovery Institute, Guangdong 518055, P. R. China
| | - Yu Zong Chen
- Bioinformatics and Drug Design group, Department of Pharmacy, National University of Singapore, Singapore 117543, Singapore
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207
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Elbasan F, Ozfidan-Konakci C, Yildiztugay E, Kucukoduk M. Rare-earth element scandium improves stomatal regulation and enhances salt and drought stress tolerance by up-regulating antioxidant responses of Oryza sativa. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 152:157-169. [PMID: 32417636 DOI: 10.1016/j.plaphy.2020.04.040] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Revised: 04/21/2020] [Accepted: 04/28/2020] [Indexed: 06/11/2023]
Abstract
Oryza sativa L. cv. Gönen grown in hydroponic culture was treated with scandium (Sc; 25 and 50 μM) alone or in combination with salt (100 mM NaCl) and/or drought (5% PEG-6000). Stress caused a decrease in growth (RGR), water content (RWC), osmotic potential (ΨΠ), chlorophyll fluorescence (Fv/Fm) and potential photochemical efficiency (Fv/Fo). Sc application prevented the decreases of these parameters. Sc also alleviated the changes on gas exchange parameters (carbon assimilation rate (A), stomatal conductance (gs), intercellular CO2 concentrations (Ci), transpiration rate (E) and stomatal limitation (Ls)). Stress caused no increase in superoxide dismutase (SOD) activity. After induvial applied NaCl or PEG, catalase (CAT) and ascorbate peroxidase (APX) showed an enhancement in activation and tried to scavenge of hydrogen peroxide (H2O2). On the other hand, in plants with the combination form of NaCl and PEG, only CAT activity was induced. Sc applications to NaCl-treated rice led to an increase of SOD, APX, glutathione reductase (GR), monodehydroascorbate reductase (MDHAR) and dehydroascorbate reductase (DHAR) as well as peroxidase (POX). Sc under NaCl could be maintained both ascorbate (AsA) and glutathione (GSH) regeneration. Despite of induction of MDHAR and DHAR under Sc plus PEG, Sc did not maintain AsA redox state because of no induction in APX activity. However, GSH pool could be regenerated by induction in DHAR and GR in this group. Sc application (especially for 25 μM) in rice exposed to NaCl + PEG resulted an enhancement in APX and MDHAR and so Sc could be partially provided AsA regeneration. Since no increases in DHAR and GR were observed, GSH pool was reduced. Due to this activation of antioxidant enzymes, stress-induced H2O2 and TBARS content (lipid peroxidation) significantly decreased in rice with Sc applications. Sc in plants with stress also increased the transcript levels of OsCDPK7 and OsBG1 related to stomatal movement and signaling pathway. Consequently, Sc protected the rice plants by minimizing disturbances caused by NaCl or PEG exposure via the AsA-GSH redox-based systems.
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Affiliation(s)
- Fevzi Elbasan
- Selcuk University, Faculty of Science, Department of Biotechnology, 42130, Konya, Turkey.
| | - Ceyda Ozfidan-Konakci
- Necmettin Erbakan University, Faculty of Science, Department of Molecular Biology and Genetics, 42090, Konya, Turkey.
| | - Evren Yildiztugay
- Selcuk University, Faculty of Science, Department of Biotechnology, 42130, Konya, Turkey.
| | - Mustafa Kucukoduk
- Selcuk University, Faculty of Science, Department of Biology, 42130, Konya, Turkey.
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208
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Qin C, Ahanger MA, Zhou J, Ahmed N, Wei C, Yuan S, Ashraf M, Zhang L. Beneficial role of acetylcholine in chlorophyll metabolism and photosynthetic gas exchange in Nicotiana benthamiana seedlings under salinity stress. PLANT BIOLOGY (STUTTGART, GERMANY) 2020; 22:357-365. [PMID: 31811780 DOI: 10.1111/plb.13079] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2019] [Accepted: 11/18/2019] [Indexed: 05/27/2023]
Abstract
Acetylcholine (ACh) is believed to improve plant growth. However, regulation at biochemical and molecular levels is largely unknown. The present study investigated the impact of exogenously applied ACh (10 µm) on growth and chlorophyll metabolism in hydroponically grown Nicotiana benthamiana under salt stress (150 mm NaCl). Salinity reduced root hydraulic conductivity while ACh-treated seedlings exhibited a significant increase, resulting in increased relative water content. Salinity induced a reduction in chlorophyll biosynthetic intermediates, such as protoporphyrin-IX, Mg-photoporphyrin-IX and protochlorophyllide, which were significantly ameliorated in the presence of ACh. This influence of ACh on chlorophyll synthesis was confirmed by up-regulation of HEMA1, CHLH, CAO and POR genes. Gas exchange parameters, i.e. stomatal conductance, internal CO2 concentration and transpiration rate, increased with ACh, thereby alleviating the salinity effects on photosynthesis. In addition, the salinity-induced enhancement of lipid peroxidation declined after ACh treatment through modulation of the activity of the assayed antioxidant enzymes (superoxide dismutase and peroxidase). Importantly, ACh significantly reduced the uptake of Na and increased uptake of K, resulting in a decline in the Na/K ratio. Results of the present study indicate that ACh can be effective in ameliorating NaCl-induced osmotic stress, altering chlorophyll metabolism and thus photosynthesis by maintaining ion homeostasis, hydraulic conductivity and water balance.
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Affiliation(s)
- C Qin
- College of Life Sciences, Northwest A&F University, Yangling, China
| | - M A Ahanger
- College of Life Sciences, Northwest A&F University, Yangling, China
| | - J Zhou
- College of Chemistry & Pharmacy, Northwest A&F University, Yangling, China
| | - N Ahmed
- Department of Botany, Mohi-Ud-Din Islamic University, Tarar Khal, Pakistan
| | - C Wei
- Shaanxi Tobacco Scientific Institution, Xi'an, China
| | - S Yuan
- Technology Center of Shaanxi China Tobacco Industrial Co., Ltd., Xi'an, China
| | - M Ashraf
- Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan
- University of Agriculture, Faisalabad, Pakistan
| | - L Zhang
- College of Life Sciences, Northwest A&F University, Yangling, China
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209
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Ye W, Wang T, Wei W, Lou S, Lan F, Zhu S, Li Q, Ji G, Lin C, Wu X, Ma L. The Full-Length Transcriptome of Spartina alterniflora Reveals the Complexity of High Salt Tolerance in Monocotyledonous Halophyte. PLANT & CELL PHYSIOLOGY 2020; 61:882-896. [PMID: 32044993 DOI: 10.1093/pcp/pcaa013] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Accepted: 01/31/2020] [Indexed: 05/09/2023]
Abstract
Spartina alterniflora (Spartina) is the only halophyte in the salt marsh. However, the molecular basis of its high salt tolerance remains elusive. In this study, we used Pacific Biosciences (PacBio) full-length single-molecule long-read sequencing and RNA-seq to elucidate the transcriptome dynamics of high salt tolerance in Spartina by salt gradient experiments. High-quality unigenes, transcription factors, non-coding RNA and Spartina-specific transcripts were identified. Co-expression network analysis found that protein kinase-encoding genes (SaOST1, SaCIPK10 and SaLRRs) are hub genes in the salt tolerance regulatory network. High salt stress induced the expression of transcription factors but repressed the expression of long non-coding RNAs. The Spartina transcriptome is closer to rice than Arabidopsis, and a higher proportion of transporter and transcription factor-encoding transcripts have been found in Spartina. Transcriptome analysis showed that high salt stress induced the expression of carbohydrate metabolism, especially cell-wall biosynthesis-related genes in Spartina, and repressed its expression in rice. Compared with rice, high salt stress highly induced the expression of stress response, protein modification and redox-related gene expression and greatly inhibited translation in Spartina. High salt stress also induced alternative splicing in Spartina, while differentially expressed alternative splicing events associated with photosynthesis were overrepresented in Spartina but not in rice. Finally, we built the SAPacBio website for visualizing full-length transcriptome sequences, transcription factors, ncRNAs, salt-tolerant genes and alternative splicing events in Spartina. Overall, this study suggests that the salt tolerance mechanism in Spartina is different from rice in many aspects and is far more complex than expected.
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Affiliation(s)
- Wenbin Ye
- Department of Automation, Xiamen University, Xiamen 361005, China
| | - Taotao Wang
- Fujian Provincial Key Laboratory of Plant Functional Biology, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Basic Forestry and Proteomics Research Center, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Wei Wei
- Fujian Provincial Key Laboratory of Plant Functional Biology, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Shuaitong Lou
- Fujian Provincial Key Laboratory of Plant Functional Biology, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Faxiu Lan
- Basic Forestry and Proteomics Research Center, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Sheng Zhu
- Department of Automation, Xiamen University, Xiamen 361005, China
| | - Qinzhen Li
- Fujian Provincial Key Laboratory of Plant Functional Biology, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Department of Automation, Xiamen University, Xiamen 361005, China
| | - Guoli Ji
- Department of Automation, Xiamen University, Xiamen 361005, China
| | - Chentao Lin
- Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, Los Angeles, CA 90095, USA
| | - Xiaohui Wu
- Department of Automation, Xiamen University, Xiamen 361005, China
| | - Liuyin Ma
- Fujian Provincial Key Laboratory of Plant Functional Biology, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Basic Forestry and Proteomics Research Center, Fujian Agriculture and Forestry University, Fuzhou 350002, China
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210
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Morphological, Physiological, and Genetic Responses to Salt Stress in Alfalfa: A Review. AGRONOMY-BASEL 2020. [DOI: 10.3390/agronomy10040577] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Alfalfa (Medicago sativa L.) is an important legume forage crop. However, its genetic improvement for salt tolerance is challenging, as alfalfa’s response to salt stress is genetically and physiologically complex. A review was made to update the knowledge of morphological, physiological, biochemical, and genetic responses of alfalfa plants to salt stress, and to discuss the potential of applying modern plant technologies to enhance alfalfa salt-resistant breeding, including genomic selection, RNA-Seq analysis, and cutting-edge Synchrotron beamlines. It is clear that alfalfa salt tolerance can be better characterized, genes conditioning salt tolerance be identified, and new marker-based tools be developed to accelerate alfalfa breeding for salt tolerance.
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211
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Zeeshan M, Lu M, Naz S, Sehar S, Cao F, Wu F. Resemblance and Difference of Seedling Metabolic and Transporter Gene Expression in High Tolerance Wheat and Barley Cultivars in Response to Salinity Stress. PLANTS 2020; 9:plants9040519. [PMID: 32316535 PMCID: PMC7238149 DOI: 10.3390/plants9040519] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2020] [Revised: 04/07/2020] [Accepted: 04/08/2020] [Indexed: 12/28/2022]
Abstract
To elucidate inter-specific similarity and difference of tolerance mechanism against salinity stress between wheat and barley, high tolerant wheat cv. Suntop and sensitive cv. Sunmate and tolerant barley cv. CM72 were hydroponically grown in a greenhouse with 100 mM NaCl. Glutathione, secondary metabolites, and genes associated with Na+ transport, defense, and detoxification were examined to discriminate the species/cultivar difference in response to salinity stress. Suntop and CM72 displayed damage to a lesser extent than in Sunmate. Compared to Sunmate, both Suntop and CM72 recorded lower electrolyte leakage and reactive oxygen species (ROS) production, higher leaf relative water content, and higher activity of PAL (phenylalanine ammonia-lyase), CAD (cinnamyl alcohol dehydrogenase), PPO (polyphenol oxidase), SKDH (shikimate dehydrogenase), and more abundance of their mRNA under salinity stress. The expression of HKT1, HKT2, salt overly sensitive (SOS)1, AKT1, and NHX1 was upregulated in CM72 and Suntop, while downregulated in Sunmate. The transcription factor WRKY 10 was significantly induced in Suntop but suppressed in CM72 and Sunmate. Higher oxidized glutathione (GSSG) content was accumulated in cv. CM72 and Sunmate, but increased glutathione (GSH) content and the ratio of GSH/GSSG were observed in leaves and roots of Suntop under salinity stress. In conclusion, glutathione homeostasis and upregulation of the TaWRKY10 transcription factor played a more important role in wheat salt-tolerant cv. Suntop, which was different from barley cv. CM72 tolerance to salinity stress. This new finding could help in developing salinity tolerance in wheat and barley cultivars.
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Affiliation(s)
- Muhammad Zeeshan
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China; (M.Z.); (S.N.); (S.S.)
| | - Meiqin Lu
- Australian Grain Technologies, Narrabri, NSW 2390, Australia;
| | - Shama Naz
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China; (M.Z.); (S.N.); (S.S.)
| | - Shafaque Sehar
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China; (M.Z.); (S.N.); (S.S.)
| | - Fangbin Cao
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China; (M.Z.); (S.N.); (S.S.)
- Correspondence: (F.C.); (F.W.); Tel./Fax: +86-571-88982827 (F.W.)
| | - Feibo Wu
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China; (M.Z.); (S.N.); (S.S.)
- Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China
- Correspondence: (F.C.); (F.W.); Tel./Fax: +86-571-88982827 (F.W.)
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212
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Wang R, Wang X, Liu K, Zhang XJ, Zhang LY, Fan SJ. Comparative Transcriptome Analysis of Halophyte Zoysia macrostachya in Response to Salinity Stress. PLANTS (BASEL, SWITZERLAND) 2020; 9:E458. [PMID: 32260413 PMCID: PMC7238138 DOI: 10.3390/plants9040458] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 03/31/2020] [Accepted: 04/02/2020] [Indexed: 12/13/2022]
Abstract
As one of the most severe environmental stresses, salt stress can cause a series of changes in plants. In salt tolerant plant Zoysia macrostachya, germination, physiology, and genetic variation under salinity have been studied previously, and the morphology and distribution of salt glands have been clarified. However, no study has investigated the transcriptome of such species under salt stress. In the present study, we compared transcriptome of Z. macrostachya under normal conditions and salt stress (300 mmol/L NaCl, 24 h) aimed to identify transcriptome responses and molecular mechanisms under salt stress in Z. macrostachya. A total of 8703 differently expressed genes (DEGs) were identified, including 4903 up-regulated and 3800 down-regulated ones. Moreover, a series of molecular processes were identified by Gene Ontology (GO) analysis, and these processes were suggested to be closely related to salt tolerance in Z. macrostachya. The identified DEGs concentrated on regulating plant growth via plant hormone signal transduction, maintaining ion homeostasis via salt secretion and osmoregulatory substance accumulation and preventing oxidative damage via increasing the activity of ROS (reactive oxygen species) scavenging system. These changes may be the most important responses of Z. macrostachya under salt stress. Some key genes related to salt stress were identified meanwhile. Collectively, our findings provided valuable insights into the molecular mechanisms and genetic underpinnings of salt tolerance in Z. macrostachya.
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Affiliation(s)
| | | | | | | | - Luo-Yan Zhang
- Key Lab of Plant Stress Research, College of Life Sciences, Shandong Normal University, Jinan 250014, China; (R.W.); (X.W.); (K.L.); (X.-J.Z.)
| | - Shou-Jin Fan
- Key Lab of Plant Stress Research, College of Life Sciences, Shandong Normal University, Jinan 250014, China; (R.W.); (X.W.); (K.L.); (X.-J.Z.)
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213
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Molina-Montenegro MA, Acuña-Rodríguez IS, Torres-Díaz C, Gundel PE, Dreyer I. Antarctic root endophytes improve physiological performance and yield in crops under salt stress by enhanced energy production and Na + sequestration. Sci Rep 2020; 10:5819. [PMID: 32242034 PMCID: PMC7118072 DOI: 10.1038/s41598-020-62544-4] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Accepted: 02/17/2020] [Indexed: 11/09/2022] Open
Abstract
Climatic change is pointed as one of the major challenges for global food security. Based on current models of climate change, reduction in precipitations and in turn, increase in the soil salinity will be a sharp constraint for crops productivity worldwide. In this context, root fungi appear as a new strategy to improve plant ecophysiological performance and crop yield under abiotic stress. In this study, we evaluated the impact of the two fungal endophytes Penicillium brevicompactum and P. chrysogenum isolated from Antarctic plants on nutrients and Na+ contents, net photosynthesis, water use efficiency, yield and survival in tomato and lettuce, facing salinity stress conditions. Inoculation of plant roots with fungal endophytes resulted in greater fresh and dry biomass production, and an enhanced survival rate under salt conditions. Inoculation of plants with the fungal endophytes was related with a higher up/down-regulation of ion homeostasis by enhanced expression of the NHX1 gene. The two endophytes diminished the effects of salt stress in tomato and lettuce, provoked a higher efficiency in photosynthetic energy production and an improved sequestration of Na+ in vacuoles is suggested by the upregulating of the expression of vacuolar NHX1 Na+/H+ antiporters. Promoting plant-beneficial interactions with root symbionts appears to be an environmentally friendly strategy to mitigate the impact of climate change variables on crop production.
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Affiliation(s)
- Marco A Molina-Montenegro
- Instituto de Ciencias Biológicas, Universidad de Talca, Campus Talca, Chile.
- Centro de Estudios Avanzados en Zonas Áridas (CEAZA), Universidad Católica del Norte, Coquimbo, Chile.
- Centro de Investigaciones y Estudios Avanzados del Maule (CIEAM), Universidad Católica del Maule, Talca, Chile.
| | | | - Cristian Torres-Díaz
- Grupo de Biodiversidad y Cambio Global (BCG), Departamento de Ciencias Básicas, Universidad del Bío-Bío, Chillán, Chile
| | - Pedro E Gundel
- IFEVA, Universidad de Buenos Aires, CONICET, Facultad de Agronomía, Buenos Aires, Argentina
| | - Ingo Dreyer
- Centro de Bioinformática y Simulación Molecular (CBSM), Facultad de Ingeniería, Universidad de Talca, Campus Talca, Chile
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214
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Wang R, Cheng Y, Ke X, Zhang X, Zhang H, Huang J. Comparative analysis of salt responsive gene regulatory networks in rice and Arabidopsis. Comput Biol Chem 2020; 85:107188. [DOI: 10.1016/j.compbiolchem.2019.107188] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2019] [Revised: 11/25/2019] [Accepted: 12/05/2019] [Indexed: 11/25/2022]
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215
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Wei M, Zhuang Y, Li H, Li P, Huo H, Shu D, Huang W, Wang S. The cloning and characterization of hypersensitive to salt stress mutant, affected in quinolinate synthase, highlights the involvement of NAD in stress-induced accumulation of ABA and proline. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 102:85-98. [PMID: 31733117 DOI: 10.1111/tpj.14613] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2019] [Revised: 10/28/2019] [Accepted: 11/01/2019] [Indexed: 05/22/2023]
Abstract
Nicotinamide adenine dinucleotide (NAD), a ubiquitous coenzyme, is required for many physiological reactions and processes. However, it remains largely unknown how NAD affects plant response to salt stress. We isolated a salt-sensitive mutant named hypersensitive to salt stress (hss) from an ethyl methanesulfonate-induced mutation population. A point mutation was identified by MutMap in the encoding region of Quinolinate Synthase (QS) gene required for the de novo synthesis of NAD. This point mutation caused a substitution of amino acid in the highly-conserved NadA domain of QS, resulting in an impairment of NAD biosynthesis in the mutant. Molecular and chemical complementation have restored the response of the hss mutant to salt stress, indicating that the decreased NAD contents in the mutant were responsible for its hypersensitivity to salt stress. Furthermore, the endogenous levels of abscisic acid (ABA) and proline were also reduced in stress-treated hss mutant. The application of ABA or proline could alleviate stress-induced oxidative damage of the mutant and partially rescue its hypersensitivity to salt stress, but not affect NAD concentration. Taken together, our results demonstrated that the NadA domain of QS is important for NAD biosynthesis, and NAD participates in plant response to salt stress by affecting stress-induced accumulation of ABA and proline.
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Affiliation(s)
- Ming Wei
- CAS Center for Excellence in Molecular Plant Sciences, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yong Zhuang
- CAS Center for Excellence in Molecular Plant Sciences, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Hui Li
- CAS Center for Excellence in Molecular Plant Sciences, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Penghui Li
- CAS Center for Excellence in Molecular Plant Sciences, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Heqiang Huo
- Mid-Florida Research and Education Center, Institute of Food and Agricultural Sciences, University of Florida, Apopka, FL, 32703, USA
| | - Dan Shu
- CAS Center for Excellence in Molecular Plant Sciences, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Weizao Huang
- CAS Center for Excellence in Molecular Plant Sciences, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
| | - Songhu Wang
- CAS Center for Excellence in Molecular Plant Sciences, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610041, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
- Southeast Asia Biodiversity Research Institute, Chinese Academy of Sciences, Yezin, Nay Pyi Taw, 05282, Myanmar
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216
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Tack DC, Su Z, Yu Y, Bevilacqua PC, Assmann SM. Tissue-specific changes in the RNA structurome mediate salinity response in Arabidopsis. RNA (NEW YORK, N.Y.) 2020; 26:492-511. [PMID: 31937672 PMCID: PMC7075263 DOI: 10.1261/rna.072850.119] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2019] [Accepted: 01/13/2020] [Indexed: 05/22/2023]
Abstract
Little is known concerning the effects of abiotic factors on in vivo RNA structures. We applied Structure-seq to assess the in vivo mRNA structuromes of Arabidopsis thaliana under salinity stress, which negatively impacts agriculture. Structure-seq utilizes dimethyl sulfate reactivity to identify As and Cs that lack base-pairing or protection. Salt stress refolded transcripts differentially in root versus shoot, evincing tissue specificity of the structurome. Both tissues exhibited an inverse correlation between salt stress-induced changes in transcript reactivity and changes in abundance, with stress-related mRNAs showing particular structural dynamism. This inverse correlation is more pronounced in mRNAs wherein the mean reactivity of the 5'UTR, CDS, and 3'UTR concertedly change under salinity stress, suggesting increased susceptibility to abundance control mechanisms in transcripts exhibiting this phenomenon, which we name "concordancy." Concordant salinity-induced increases in reactivity were notably observed in photosynthesis genes, thereby implicating mRNA structural loss in the well-known depression of photosynthesis by salt stress. Overall, changes in secondary structure appear to impact mRNA abundance, molding the functional specificity of the transcriptome under stress.
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Affiliation(s)
- David C Tack
- Department of Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802, USA
- Spectrum Health Office of Research, Grand Rapids, Michigan 49503, USA
| | - Zhao Su
- Department of Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Yunqing Yu
- Department of Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Philip C Bevilacqua
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802, USA
- Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA
- Center for RNA Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Sarah M Assmann
- Department of Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA
- Center for RNA Molecular Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA
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217
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Chakraborty K, Mondal S, Ray S, Samal P, Pradhan B, Chattopadhyay K, Kar MK, Swain P, Sarkar RK. Tissue Tolerance Coupled With Ionic Discrimination Can Potentially Minimize the Energy Cost of Salinity Tolerance in Rice. FRONTIERS IN PLANT SCIENCE 2020; 11:265. [PMID: 32269578 PMCID: PMC7109317 DOI: 10.3389/fpls.2020.00265] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Accepted: 02/20/2020] [Indexed: 05/15/2023]
Abstract
Salinity is one of the major constraints in rice production. To date, development of salt-tolerant rice cultivar is primarily focused on salt-exclusion strategies, which incur greater energy cost. The present study aimed to evaluate a balancing strategy of ionic discrimination vis-à-vis tissue tolerance, which could potentially minimize the energy cost of salt tolerance in rice. Four rice genotypes, viz., FL478, IR29, Kamini, and AC847, were grown hydroponically and subjected to salt stress equivalent to 12 dS m-1 at early vegetative stage. Different physiological observations (leaf chlorophyll content, chlorophyll fluorescence traits, and tissue Na+ and K+ content) and visual scoring suggested a superior Na+-partitioning strategy operating in FL478. A very low tissue Na+/K+ ratio in the leaves of FL478 after 7 days of stress hinted the existence of selective ion transport mechanism in this genotype. On the contrary, Kamini, an equally salt-tolerant genotype, was found to possess a higher leaf Na+/K+ ratio than does FL478 under similar stress condition. Salt-induced expression of different Na+ and K+ transporters indicated significant upregulation of SOS, HKT, NHX, and HAK groups of transporters in both leaves and roots of FL478, followed by Kamini. The expression of plasma membrane and vacuolar H+ pumps (OsAHA1, OsAHA7, and OsV-ATPase) were also upregulated in these two genotypes. On the other hand, IR29 and AC847 showed greater salt susceptibility owing to excess upward transport of Na+ and eventually died within a few days of stress imposition. But in the "leaf clip" assay, it was found that both IR29 and Kamini had high tissue-tolerance and chlorophyll-retention abilities. On the contrary, FL478, although having higher ionic-discrimination ability, showed the least degree of tissue tolerance as evident from the LC50 score (amount of Na+ required to reduce the initial chlorophyll content to half) of 336 mmol g-1 as against 459 and 424 mmol g-1 for IR29 and Kamini, respectively. Overall, the present study indicated that two components (ionic selectivity and tissue tolerance) of salt tolerance mechanism are distinct in rice. Unique genotypes like Kamini could effectively balance both of these strategies to achieve considerable salt tolerance, perhaps with lesser energy cost.
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218
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Solis CA, Yong MT, Vinarao R, Jena K, Holford P, Shabala L, Zhou M, Shabala S, Chen ZH. Back to the Wild: On a Quest for Donors Toward Salinity Tolerant Rice. FRONTIERS IN PLANT SCIENCE 2020; 11:323. [PMID: 32265970 PMCID: PMC7098918 DOI: 10.3389/fpls.2020.00323] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2020] [Accepted: 03/05/2020] [Indexed: 05/20/2023]
Abstract
Salinity stress affects global food producing areas by limiting both crop growth and yield. Attempts to develop salinity-tolerant rice varieties have had limited success due to the complexity of the salinity tolerance trait, high variation in the stress response and a lack of available donors for candidate genes for cultivated rice. As a result, finding suitable donors of genes and traits for salinity tolerance has become a major bottleneck in breeding for salinity tolerant crops. Twenty-two wild Oryza relatives have been recognized as important genetic resources for quantitatively inherited traits such as resistance and/or tolerance to abiotic and biotic stresses. In this review, we discuss the challenges and opportunities of such an approach by critically analyzing evolutionary, ecological, genetic, and physiological aspects of Oryza species. We argue that the strategy of rice breeding for better Na+ exclusion employed for the last few decades has reached a plateau and cannot deliver any further improvement in salinity tolerance in this species. This calls for a paradigm shift in rice breeding and more efforts toward targeting mechanisms of the tissue tolerance and a better utilization of the potential of wild rice where such traits are already present. We summarize the differences in salinity stress adaptation amongst cultivated and wild Oryza relatives and identify several key traits that should be targeted in future breeding programs. This includes: (1) efficient sequestration of Na+ in mesophyll cell vacuoles, with a strong emphasis on control of tonoplast leak channels; (2) more efficient control of xylem ion loading; (3) efficient cytosolic K+ retention in both root and leaf mesophyll cells; and (4) incorporating Na+ sequestration in trichrome. We conclude that while amongst all wild relatives, O. rufipogon is arguably a best source of germplasm at the moment, genes and traits from the wild relatives, O. coarctata, O. latifolia, and O. alta, should be targeted in future genetic programs to develop salt tolerant cultivated rice.
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Affiliation(s)
- Celymar A. Solis
- School of Science, Western Sydney University, Penrith, NSW, Australia
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS, Australia
| | - Miing T. Yong
- School of Science, Western Sydney University, Penrith, NSW, Australia
| | - Ricky Vinarao
- International Rice Research Institute, Metro Manila, Philippines
| | - Kshirod Jena
- International Rice Research Institute, Metro Manila, Philippines
| | - Paul Holford
- School of Science, Western Sydney University, Penrith, NSW, Australia
| | - Lana Shabala
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS, Australia
| | - Meixue Zhou
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS, Australia
| | - Sergey Shabala
- Tasmanian Institute of Agriculture, University of Tasmania, Hobart, TAS, Australia
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan, China
| | - Zhong-Hua Chen
- School of Science, Western Sydney University, Penrith, NSW, Australia
- Hawkesbury Institute for the Environment, Western Sydney University, Penrith, NSW, Australia
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219
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Yousefirad S, Soltanloo H, Ramezanpour SS, Zaynali Nezhad K, Shariati V. The RNA-seq transcriptomic analysis reveals genes mediating salt tolerance through rapid triggering of ion transporters in a mutant barley. PLoS One 2020; 15:e0229513. [PMID: 32187229 PMCID: PMC7080263 DOI: 10.1371/journal.pone.0229513] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2019] [Accepted: 02/09/2020] [Indexed: 12/23/2022] Open
Abstract
Considering the complex nature of salinity tolerance mechanisms, the use of isogenic lines or mutants possessing the same genetic background albeit different tolerance to salinity is a suitable method for reduction of analytical complexity to study these mechanisms. In the present study, whole transcriptome analysis was evaluated using RNA-seq method between a salt-tolerant mutant line "M4-73-30" and its wild-type "Zarjou" cultivar at seedling stage after six hours of exposure to salt stress (300 mM NaCl). Transcriptome sequencing yielded 20 million reads for each genotype. A total number of 7116 transcripts with differential expression were identified, 1586 and 1479 of which were obtained with significantly increased expression in the mutant and the wild-type, respectively. In addition, the families of WRKY, ERF, AP2/EREBP, NAC, CTR/DRE, AP2/ERF, MAD, MIKC, HSF, and bZIP were identified as the important transcription factors with specific expression in the mutant genotype. The RNA-seq results were confirmed at several time points using qRT-PCR for some important salt-responsive genes. In general, the results revealed that the mutant accumulated higher levels of sodium ion in the root and decreased its transfer to the shoot. Also, the mutant increased the amount of potassium ion leading to the maintenance a high ratio [K+]/[Na+] in the shoot compared to its wild-type via fast stomata closure and consequently transpiration reduction under the salt stress. Moreover, a reduction in photosynthesis and respiration was observed in the mutant, resulting in utilization of the stored energy and the carbon for maintaining the plant tissues, which is considered as a mechanism of salt tolerance in plants. Up-regulation of catalase, peroxidase, and ascorbate peroxidase genes has resulted in higher accumulation of H2O2 in the wild-type compared to the mutant. Therefore, the wild-type initiated rapid ROS signals which led to less oxidative scavenging in comparison with the mutant. The mutant increased expression in the ion transporters and the channels related to the salinity to maintain the ion homeostasis. In overall, the results demonstrated that the mutant responded better to the salt stress under both osmotic and ionic stress phases and lower damage was observed in the mutant compared to its wild-type under the salt stress.
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Affiliation(s)
- Sareh Yousefirad
- Department of Plant Breeding and Plant Biotechnolgy, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Golestan, Iran
| | - Hassan Soltanloo
- Department of Plant Breeding and Plant Biotechnolgy, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Golestan, Iran
| | - Seyedeh Sanaz Ramezanpour
- Department of Plant Breeding and Plant Biotechnolgy, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Golestan, Iran
| | - Khalil Zaynali Nezhad
- Department of Plant Breeding and Plant Biotechnolgy, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Golestan, Iran
| | - Vahid Shariati
- Department of Genome Center, National Institute of Genetic Engineering and Biotechnology, Tehran, Iran
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220
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Wani SH, Kumar V, Khare T, Guddimalli R, Parveda M, Solymosi K, Suprasanna P, Kavi Kishor PB. Engineering salinity tolerance in plants: progress and prospects. PLANTA 2020; 251:76. [PMID: 32152761 DOI: 10.1007/s00425-020-03366-6] [Citation(s) in RCA: 74] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2019] [Accepted: 02/24/2020] [Indexed: 05/20/2023]
Abstract
There is a need to integrate conceptual framework based on the current understanding of salt stress responses with different approaches for manipulating and improving salt tolerance in crop plants. Soil salinity exerts significant constraints on global crop production, posing a serious challenge for plant breeders and biotechnologists. The classical transgenic approach for enhancing salinity tolerance in plants revolves by boosting endogenous defence mechanisms, often via a single-gene approach, and usually involves the enhanced synthesis of compatible osmolytes, antioxidants, polyamines, maintenance of hormone homeostasis, modification of transporters and/or regulatory proteins, including transcription factors and alternative splicing events. Occasionally, genetic manipulation of regulatory proteins or phytohormone levels confers salinity tolerance, but all these may cause undesired reduction in plant growth and/or yields. In this review, we present and evaluate novel and cutting-edge approaches for engineering salt tolerance in crop plants. First, we cover recent findings regarding the importance of regulatory proteins and transporters, and how they can be used to enhance salt tolerance in crop plants. We also evaluate the importance of halobiomes as a reservoir of genes that can be used for engineering salt tolerance in glycophytic crops. Additionally, the role of microRNAs as critical post-transcriptional regulators in plant adaptive responses to salt stress is reviewed and their use for engineering salt-tolerant crop plants is critically assessed. The potentials of alternative splicing mechanisms and targeted gene-editing technologies in understanding plant salt stress responses and developing salt-tolerant crop plants are also discussed.
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Affiliation(s)
- Shabir Hussain Wani
- Mountain Research Centre for Field Crops, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir, Khudwani, Anantnag, Jammu and Kashmir, 192 101, India.
| | - Vinay Kumar
- Department of Biotechnology, Modern College, Savitribai Phule Pune University, Ganeshkhind, Pune, 411 016, India
- Department of Environmental Science, Savitribai Phule Pune University, Ganeshkhind, Pune, 411 016, India
| | - Tushar Khare
- Department of Biotechnology, Modern College, Savitribai Phule Pune University, Ganeshkhind, Pune, 411 016, India
| | | | | | - Katalin Solymosi
- Department of Plant Anatomy, Institute of Biology, ELTE-Eötvös Loránd University, Budapest, 1053, Hungary
| | - Penna Suprasanna
- Nuclear Agriculture and Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai, 400 085, India
| | - P B Kavi Kishor
- Department of Biotechnology, Vignan's Foundation for Science Technology and Research, Vadlamudi, Guntur, 522 213, India
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221
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Pancaldi F, Trindade LM. Marginal Lands to Grow Novel Bio-Based Crops: A Plant Breeding Perspective. FRONTIERS IN PLANT SCIENCE 2020; 11:227. [PMID: 32194604 PMCID: PMC7062921 DOI: 10.3389/fpls.2020.00227] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2019] [Accepted: 02/13/2020] [Indexed: 05/09/2023]
Abstract
The biomass demand to fuel a growing global bio-based economy is expected to tremendously increase over the next decades, and projections indicate that dedicated biomass crops will satisfy a large portion of it. The establishment of dedicated biomass crops raises huge concerns, as they can subtract land that is required for food production, undermining food security. In this context, perennial biomass crops suitable for cultivation on marginal lands (MALs) raise attraction, as they could supply biomass without competing for land with food supply. While these crops withstand marginal conditions well, their biomass yield and quality do not ensure acceptable economic returns to farmers and cost-effective biomass conversion into bio-based products, claiming genetic improvement. However, this is constrained by the lack of genetic resources for most of these crops. Here we first review the advantages of cultivating novel perennial biomass crops on MALs, highlighting management practices to enhance the environmental and economic sustainability of these agro-systems. Subsequently, we discuss the preeminent breeding targets to improve the yield and quality of the biomass obtainable from these crops, as well as the stability of biomass production under MALs conditions. These targets include crop architecture and phenology, efficiency in the use of resources, lignocellulose composition in relation to bio-based applications, and tolerance to abiotic stresses. For each target trait, we outline optimal ideotypes, discuss the available breeding resources in the context of (orphan) biomass crops, and provide meaningful examples of genetic improvement. Finally, we discuss the available tools to breed novel perennial biomass crops. These comprise conventional breeding methods (recurrent selection and hybridization), molecular techniques to dissect the genetics of complex traits, speed up selection, and perform transgenic modification (genetic mapping, QTL and GWAS analysis, marker-assisted selection, genomic selection, transformation protocols), and novel high-throughput phenotyping platforms. Furthermore, novel tools to transfer genetic knowledge from model to orphan crops (i.e., universal markers) are also conceptualized, with the belief that their development will enhance the efficiency of plant breeding in orphan biomass crops, enabling a sustainable use of MALs for biomass provision.
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Affiliation(s)
| | - Luisa M. Trindade
- Plant Breeding, Wageningen University & Research, Wageningen, Netherlands
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Theerawitaya C, Tisarum R, Samphumphuang T, Takabe T, Cha-um S. Expression levels of the Na +/K + transporter OsHKT2;1 and vacuolar Na +/H + exchanger OsNHX1, Na enrichment, maintaining the photosynthetic abilities and growth performances of indica rice seedlings under salt stress. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2020; 26:513-523. [PMID: 32205927 PMCID: PMC7078393 DOI: 10.1007/s12298-020-00769-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2019] [Revised: 10/31/2019] [Accepted: 01/21/2020] [Indexed: 05/20/2023]
Abstract
Salt affected soil inhibits plant growth, development and productivity, especially in case of rice crop. Ion homeostasis is a candidate defense mechanism in the salt tolerant plants or halophyte species, where the salt toxic ions are stored in the vacuoles. The aim of this investigation was to determine the OsNHX1 (a vacuolar Na+/H+ exchanger) and OsHKT2;1 (Na+/K+ transporter) regulation by salt stress (200 mM NaCl) in two rice cultivars, i.e. Pokkali (salt tolerant) and IR29 (salt susceptible), the accumulation of Na+ in the root and leaf tissues using CoroNa Green® staining dye and the associated physiological changes in test plants. Na+ content was largely increased in the root tissues of rice seedlings cv. Pokkali (15 min after salt stress) due to the higher expression of OsHKT2;1 gene (by 2.5 folds) in the root tissues. The expression of OsNHX1 gene in the leaf tissues was evidently increased in salt stressed seedlings of Pokkali, whereas it was unchanged in salt stressed seedlings of IR29. Na+ in the root tissues of both Pokkali and IR29 was enriched, when subjected to 200 mM NaCl for 12 h and easily detected in the leaf tissues of salt stressed plants exposed for 24 h, especially in cv. Pokkali. Moreover, the overexpression of OsNHX1 gene regulated the translocation of Na+ from root to leaf tissues, and compartmentation of Na+ into vacuoles, thereby maintaining the photosynthetic abilities in cv. Pokkali. Overall growth performance, maximum quantum yield (Fv/Fm), photon yield of PSII (ΦPSII) and net photosynthetic rate (Pn) was improved in salt stressed leaves of Pokkali than those in salt stressed IR29.
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Affiliation(s)
- Cattarin Theerawitaya
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 113 Paholyothin Rd., Khlong Nuang, Khlong Luang, Pathum Thani 12120 Thailand
| | - Rujira Tisarum
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 113 Paholyothin Rd., Khlong Nuang, Khlong Luang, Pathum Thani 12120 Thailand
| | - Thapanee Samphumphuang
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 113 Paholyothin Rd., Khlong Nuang, Khlong Luang, Pathum Thani 12120 Thailand
| | - Taruhiro Takabe
- Research Institute Meijo University, 1-501 Shiogamagushi, Tenpaku-ku, Nagoya, 468-8502 Japan
| | - Suriyan Cha-um
- National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), 113 Paholyothin Rd., Khlong Nuang, Khlong Luang, Pathum Thani 12120 Thailand
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Shafiq F, Iqbal M, Ashraf MA, Ali M. Foliar applied fullerol differentially improves salt tolerance in wheat through ion compartmentalization, osmotic adjustments and regulation of enzymatic antioxidants. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2020; 26:475-487. [PMID: 32205924 PMCID: PMC7078423 DOI: 10.1007/s12298-020-00761-x] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2019] [Revised: 12/05/2019] [Accepted: 01/10/2020] [Indexed: 05/11/2023]
Abstract
Earlier we reported that seed pre-treatment with PHF promoted early seedling growth and salinity tolerance in wheat. As a way forward, experiments were conducted to investigate whether and to what extent foliar spray of fullerol could influence growth and physio-biochemical responses in salt stressed wheat. In a control experiment, seeds were sown in sand filled pots (500 g) under control and 150 mM NaCl stress. After 15 days, foliar spray of fullerol at 0, 10, 40, 80 and 120 nM concentration was applied and the data for various morpho-biochemical attributes recorded after 2 weeks. Fullerol caused improvements in shoot growth attributes while had least effect on root growth traits. Increase in total chlorophyll while reduction in Car/Chl ratio was evident under salinity in response to fullerol spray. Only 40 and 80 nM spray treatments improved antioxidant activities and reduced H2O2 contents while MDA contents which increased due to salt stress, remained unaffected by foliar spray. Fullerol spray also improved sugars, proline and free amino acids under salinity. During second experiment under natural conditions, 60 day old plants grown in sand filled pots (10 kg) under 0 and 150 mM NaCl were foliar sprayed with selected concentrations (0, 40 and 80 nM) of fullerol. Salinity inhibited gas exchange and grain yield attributes while fullerol-sprayed plants exhibited recovery. Fullerol spray resulted in high root and shoot K+ and shoot Ca2+ contents. Also, increase in shoot and root P, while lesser shoot Na+ was recorded due to 80 nM spray under salt stress. Overall, 40 and 80 nM fullerol spray improved photosynthetic activity, osmolytes accumulation and altered tissue ion compartmentalization which contributed to improvement in grain yield attributes under salinity.
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Affiliation(s)
- Fahad Shafiq
- Department of Botany, Government College University Faisalabad, Faisalabad, Pakistan
| | - Muhammad Iqbal
- Department of Botany, Government College University Faisalabad, Faisalabad, Pakistan
| | | | - Muhammad Ali
- Department of Bioinformatics and Biotechnology, Government College University Faisalabad, Faisalabad, Pakistan
- Faculty of Animal Sciences, Quaid-i-Azam University, Islamabad, Pakistan
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Laterals take it better - Emerging and young lateral roots survive lethal salinity longer than the primary root in Arabidopsis. Sci Rep 2020; 10:3291. [PMID: 32094490 PMCID: PMC7040039 DOI: 10.1038/s41598-020-60163-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2019] [Accepted: 02/06/2020] [Indexed: 11/16/2022] Open
Abstract
Plant responses to salinity have been extensively studied over the last decades. Despite the vast accumulated knowledge, the ways Arabidopsis lateral roots (LR) cope with lethal salinity has not been fully resolved. Here we compared the primary root (PR) and the LR responses during events leading to lethal salinity (NaCl 200 mM) in Arabidopsis. We found that the PR and young LR responded differently to lethal salinity: While the PR died, emerging and young LR’s remained strikingly viable. Moreover, “age acquired salt tolerance” (AAST) was observed in the PR. During the 2 days after germination (DAG) the PR was highly sensitive, but at 8 DAG there was a significant increase in the PR cell survival. Nevertheless, the young LR exhibited an opposite pattern and completely lost its salinity tolerance, as it elongated beyond 400 µm. Examination of several cell death signatures investigated in the young LR showed no signs of an active programmed cell death (PCD) during lethal salinity. However, Autophagic PCD (A-PCD) but not apoptosis-like PCD (AL-PCD) was found to be activated in the PR during the high salinity conditions. We further found that salinity induced NADPH oxidase activated ROS, which were more highly distributed in the young LR compared to the PR, is required for the improved viability of the LR during lethal salinity conditions. Our data demonstrated a position-dependent resistance of Arabidopsis young LR to high salinity. This response can lead to identification of novel salt stress coping mechanisms needed by agriculture during the soil salinization challenge.
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225
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Orozco-Mosqueda MDC, Glick BR, Santoyo G. ACC deaminase in plant growth-promoting bacteria (PGPB): An efficient mechanism to counter salt stress in crops. Microbiol Res 2020; 235:126439. [PMID: 32097862 DOI: 10.1016/j.micres.2020.126439] [Citation(s) in RCA: 131] [Impact Index Per Article: 32.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Revised: 02/12/2020] [Accepted: 02/15/2020] [Indexed: 11/27/2022]
Abstract
Salinity in agricultural soil is a major problem around the world, with negative consequences for the growth and production of a wide range of crops. To counteract these harmful effects, plants sometimes have bacterial partners that contain the enzyme 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase, which acts by degrading ACC (the precursor of ethylene in all higher plants). The enzymatic activity of ACC deaminase results in the production of α-ketobutyrate and ammonia, which, by lowering ACC levels, prevents excessive increases in the synthesis of ethylene under various stress conditions and is one of the most efficient mechanisms to induce plant tolerance to salt stress. In the present review, recent works on the role of ACC deaminase are discussed alongside its importance in promoting plant growth under conditions of salt stress in endophytic and rhizospheric bacteria, with some emphasis on Bacillus species. In addition, the toxic effects of soil salinity on plants and microbial biodiversity are analysed. Recent findings on the synergetic functioning of ACC deaminase and other bacterial mechanisms of salt stress tolerance, such as trehalose accumulation, are also summarized. Finally, we discuss the various advantages of ACC deaminase-producing bacilli as bioinoculants to address the problem of salinity in agricultural soils.
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Affiliation(s)
- Ma Del Carmen Orozco-Mosqueda
- Facultad de Agrobiología "Presidente Juárez", Universidad Michoacana de San Nicolás de Hidalgo (UMSNH), Paseo Lázaro Cárdenas s/n Esq, Berlín, Col. Viveros, 60190, Uruapan, Michoacán, Mexico
| | - Bernard R Glick
- Department of Biology, University of Waterloo, Waterloo, ON, N2L 3G1, Canada
| | - Gustavo Santoyo
- Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Ciudad Universitaria, 58030, Morelia, Michoacán, Mexico.
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226
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Melatonin Application Improves Salt Tolerance of Alfalfa ( Medicago sativa L.) by Enhancing Antioxidant Capacity. PLANTS 2020; 9:plants9020220. [PMID: 32046353 PMCID: PMC7076651 DOI: 10.3390/plants9020220] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 01/23/2020] [Accepted: 02/06/2020] [Indexed: 12/16/2022]
Abstract
Alfalfa (Medicago sativa L.) is an important and widely cultivated forage grass. The productivity and forage quality of alfalfa are severely affected by salt stress. Melatonin is a bioactive molecule with versatile physiological functions and plays important roles in response to various biotic and abiotic stresses. Melatonin has been proven efficient in improving alfalfa drought and waterlogging tolerance in recent studies. In our reports, we applied melatonin exogenously to explore the effects of melatonin on alfalfa growth and salt resistance. The results demonstrated that melatonin application promoted alfalfa seed germination and seedling growth, and reduced oxidative damage under salt stress. Further application research found that melatonin alleviated salt injury in alfalfa plants under salt stress. The electrolyte leakage, malondialdehyde (MDA) content and H2O2 content were significantly reduced, and the activities of catalase (CAT), peroxidase (POD), and Cu/Zn superoxide dismutase (Cu/Zn-SOD) were increased with melatonin pretreatment compared to control plants under salt stress with the upregulation of genes related to melatonin and antioxidant enzymes biosynthesis. Melatonin was also involved in reducing Na+ accumulation in alfalfa plants. Our study indicates that melatonin plays a primary role as an antioxidant in scavenging H2O2 and enhancing activities of antioxidant enzymes to improve the salt tolerance of alfalfa plants.
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227
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Wu P, Cogill S, Qiu Y, Li Z, Zhou M, Hu Q, Chang Z, Noorai RE, Xia X, Saski C, Raymer P, Luo H. Comparative transcriptome profiling provides insights into plant salt tolerance in seashore paspalum (Paspalum vaginatum). BMC Genomics 2020; 21:131. [PMID: 32033524 PMCID: PMC7006205 DOI: 10.1186/s12864-020-6508-1] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2019] [Accepted: 01/20/2020] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Seashore paspalum (Paspalum vaginatum), a halophytic warm-seasoned perennial grass, is tolerant of many environmental stresses, especially salt stress. To investigate molecular mechanisms underlying salinity tolerance in seashore paspalum, physiological characteristics and global transcription profiles of highly (Supreme) and moderately (Parish) salinity-tolerant cultivars under normal and salt stressed conditions were analyzed. RESULTS Physiological characterization comparing highly (Supreme) and moderately (Parish) salinity-tolerant cultivars revealed that Supreme's higher salinity tolerance is associated with higher Na+ and Ca2+ accumulation under normal conditions and further increase of Na+ under salt-treated conditions (400 mM NaCl), possibly by vacuolar sequestration. Moreover, K+ retention under salt treatment occurs in both cultivars, suggesting that it may be a conserved mechanism for prevention of Na+ toxicity. We sequenced the transcriptome of the two cultivars under both normal and salt-treated conditions (400 mM NaCl) using RNA-seq. De novo assembly of about 153 million high-quality reads and identification of Open Reading Frames (ORFs) uncovered a total of 82,608 non-redundant unigenes, of which 3250 genes were identified as transcription factors (TFs). Gene Ontology (GO) annotation revealed the presence of genes involved in diverse cellular processes in seashore paspalum's transcriptome. Differential expression analysis identified a total of 828 and 2222 genes that are responsive to high salinity for Supreme and Parish, respectively. "Oxidation-reduction process" and "nucleic acid binding" are significantly enriched GOs among differentially expressed genes in both cultivars under salt treatment. Interestingly, compared to Parish, a number of salt stress induced transcription factors are enriched and show higher abundance in Supreme under normal conditions, possibly due to enhanced Ca2+ signaling transduction out of Na+ accumulation, which may be another contributor to Supreme's higher salinity tolerance. CONCLUSION Physiological and transcriptome analyses of seashore paspalum reveal major molecular underpinnings contributing to plant response to salt stress in this halophytic warm-seasoned perennial grass. The data obtained provide valuable molecular resources for functional studies and developing strategies to engineer plant salinity tolerance.
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Affiliation(s)
- Peipei Wu
- Department of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA
| | - Steven Cogill
- Department of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.,Present address: Emergency Medicine, Stanford University, Stanford, California, 94305, USA
| | - Yijian Qiu
- Department of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA
| | - Zhigang Li
- Department of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA
| | - Man Zhou
- Department of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA
| | - Qian Hu
- Department of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA
| | - Zhihui Chang
- Department of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA
| | - Rooksana E Noorai
- Clemson University Genomics Institute, Clemson University, Clemson, SC, 29634, USA
| | - Xiaoxia Xia
- Clemson University Genomics Institute, Clemson University, Clemson, SC, 29634, USA
| | - Christopher Saski
- Clemson University Genomics Institute, Clemson University, Clemson, SC, 29634, USA
| | - Paul Raymer
- Department of Crop & Soil Sciences, University of Georgia, Griffin, GA, 30223, USA
| | - Hong Luo
- Department of Genetics and Biochemistry, Clemson University, Clemson, SC, 29634, USA.
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Abstract
AbstractThe dwarf shrub Cressa cretica is a thermocosmopolitan halophilic species. Different mechanisms confer salt stress tolerance such as tissue and osmotic tolerance and ion exclusion, as well as the associated microbiota. The aims were (i) to investigate the best conditions for C. cretica seed germination and to examine the tolerance of germinated seeds and seedlings to different salt concentrations and (ii) to characterize the rhizosphere and bulk soil microbiota. Germination and growth experiments were conducted to address plant salt tolerance, and with Illumina sequencing the microbiota of rhizosphere and bulk soil was investigated. While high salt concentrations (600, 800, and 1000 mM NaCl) inhibited C.cretica seed germination, recovery of ungerminated seeds under non-saline conditions was high, indicating osmotic rather than toxic effects of high salt concentrations. The microbiota found in rhizosphere and bulk soil showed high similarity with that found in previous studies on halophyte-associated microbiota, among the Planctomyces, Halomonas and Jeotgalibacillus. Concluding, salt stress responses on the plant level were shown, as has the involvement of associated halotolerant bacteria. Still, the potential role for mitigating saline stress by the bacterial associates of C. cretica, most of them microbial dark matter, will have to be investigated, as will the contributions of archaea and fungi.
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229
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Chen Y, Cao C, Guo Z, Zhang Q, Li S, Zhang X, Gong J, Shen Y. Herbivore exposure alters ion fluxes and improves salt tolerance in a desert shrub. PLANT, CELL & ENVIRONMENT 2020; 43:400-419. [PMID: 31674033 DOI: 10.1111/pce.13662] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Revised: 08/28/2019] [Accepted: 09/23/2019] [Indexed: 06/10/2023]
Abstract
Plants have evolved complex mechanisms that allow them to withstand multiple environmental stresses, including biotic and abiotic stresses. Here, we investigated the interaction between herbivore exposure and salt stress of Ammopiptanthus nanus, a desert shrub. We found that jasmonic acid (JA) was involved in plant responses to both herbivore attack and salt stress, leading to an increased NaCl stress tolerance for herbivore-pretreated plants and increase in K+ /Na+ ratio in roots. Further evidence revealed the mechanism by which herbivore improved plant NaCl tolerance. Herbivore pretreatment reduced K+ efflux and increased Na+ efflux in plants subjected to long-term, short-term, or transient NaCl stress. Moreover, herbivore pretreatment promoted H+ efflux by increasing plasma membrane H+ -adenosine triphosphate (ATP)ase activity. This H+ efflux creates a transmembrane proton motive force that drives the Na+ /H+ antiporter to expel excess Na+ into the external medium. In addition, high cytosolic Ca2+ was observed in the roots of herbivore-treated plants exposed to NaCl, and this effect may be regulated by H+ -ATPase. Taken together, herbivore exposure enhances A. nanus tolerance to salt stress by activating the JA-signalling pathway, increasing plasma membrane H+ -ATPase activity, promoting cytosolic Ca2+ accumulation, and then restricting K+ leakage and reducing Na+ accumulation in the cytosol.
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Affiliation(s)
- Yingying Chen
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, China
| | - Chuanjian Cao
- China Forest Pest control and Quarantine Station of Ningxia, Yinchuan, China
| | - Zhujuan Guo
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, China
| | - Qinghua Zhang
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, China
| | - Shuwen Li
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, China
| | - Xiao Zhang
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, China
| | - Junqing Gong
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, China
| | - Yingbai Shen
- College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China
- National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, China
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230
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Shao Y, Cheng Y, Pang H, Chang M, He F, Wang M, Davis DJ, Zhang S, Betz O, Fleck C, Dai T, Madahhosseini S, Wilkop T, Jernstedt J, Drakakaki G. Investigation of Salt Tolerance Mechanisms Across a Root Developmental Gradient in Almond Rootstocks. FRONTIERS IN PLANT SCIENCE 2020; 11:595055. [PMID: 33469461 PMCID: PMC7813803 DOI: 10.3389/fpls.2020.595055] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2020] [Accepted: 11/23/2020] [Indexed: 05/09/2023]
Abstract
The intensive use of groundwater in agriculture under the current climate conditions leads to acceleration of soil salinization. Given that almond is a salt-sensitive crop, selection of salt-tolerant rootstocks can help maintain productivity under salinity stress. Selection for tolerant rootstocks at an early growth stage can reduce the investment of time and resources. However, salinity-sensitive markers and salinity tolerance mechanisms of almond species to assist this selection process are largely unknown. We established a microscopy-based approach to investigate mechanisms of stress tolerance in and identified cellular, root anatomical, and molecular traits associated with rootstocks exhibiting salt tolerance. We characterized three almond rootstocks: Empyrean-1 (E1), Controller-5 (C5), and Krymsk-86 (K86). Based on cellular and molecular evidence, our results show that E1 has a higher capacity for salt exclusion by a combination of upregulating ion transporter expression and enhanced deposition of suberin and lignin in the root apoplastic barriers, exodermis, and endodermis, in response to salt stress. Expression analyses revealed differential regulation of cation transporters, stress signaling, and biopolymer synthesis genes in the different rootstocks. This foundational study reveals the mechanisms of salinity tolerance in almond rootstocks from cellular and structural perspectives across a root developmental gradient and provides insights for future screens targeting stress response.
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Affiliation(s)
- Yuhang Shao
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
- Key Laboratory of Crop Physiology Ecology and Production Management of Ministry of Agriculture, Nanjing Agricultural University, Nanjing, China
| | - Yukun Cheng
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
- Triticeae Research Institute, Sichuan Agricultural University, Chengdu, China
| | - Hongguang Pang
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
- College of Horticulture, Hebei Agricultural University, Baoding, China
| | - Mingqin Chang
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
| | - Fang He
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
- College of Forestry, Sichuan Agricultural University, Chengdu, China
| | - Minmin Wang
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
| | - Destiny J. Davis
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
| | - Shuxiao Zhang
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
| | - Oliver Betz
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
| | - Chuck Fleck
- Sierra Gold Nurseries, Yuba City, CA, United States
| | - Tingbo Dai
- Key Laboratory of Crop Physiology Ecology and Production Management of Ministry of Agriculture, Nanjing Agricultural University, Nanjing, China
| | - Shahab Madahhosseini
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
- Genetic and Plant Production Department, Vali-e-Asr University of Rafsanjan, Rafsanjan, Iran
| | - Thomas Wilkop
- Light Microscopy Core, University of Kentucky, Lexington, KY, United States
| | - Judy Jernstedt
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
| | - Georgia Drakakaki
- Department of Plant Sciences, University of California, Davis, Davis, CA, United States
- *Correspondence: Georgia Drakakaki,
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Krishnamurthy SL, Pundir P, Warraich AS, Rathor S, Lokeshkumar BM, Singh NK, Sharma PC. Introgressed Saltol QTL Lines Improves the Salinity Tolerance in Rice at Seedling Stage. FRONTIERS IN PLANT SCIENCE 2020; 11:833. [PMID: 32595689 PMCID: PMC7300257 DOI: 10.3389/fpls.2020.00833] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2019] [Accepted: 05/25/2020] [Indexed: 05/05/2023]
Abstract
Rice is a staple food crop in Asia and plays a crucial role in the economy of this region. However, production of rice and its cultivating areas are under constant threat of soil salinity. A major QTL, Saltol, responsible for salinity tolerance at seedling stage has been mapped on chromosome 1 using Pokkali/IR29 Recombinant Inbred Lines (RIL) population. The present study was aimed to incorporate Saltol Quantitative Trait Loci (QTL) in two high yielding mega rice varieties i.e. Pusa44 and Sarjoo52 through Marker Assisted Backcross Breeding (MABB). To improve the seedling stage salinity tolerance in these cultivars, we introgressed the Saltol QTL from donor parent FL478 a derivative of Pokkali. A total of three backcrosses (BC3) followed by selfing have led to successful introgression of Saltol QTL. Foreground selection at each breeding cycle was done using micro-satellite markers RM3412 and AP3206 to confirm Saltol QTL. The precise transfer of Saltol region was established using recombinant selection through flanking markers RM493 and G11a. Finally, 10 Saltol near isogenic lines (NILs) of Pusa44 and eight NILs of Sarjoo52 were successfully developed. These NILs (BC3F4) were evaluated for seedling stage salinity under hydroponic system. The NILs PU99, PU176, PU200, PU215, PU229, PU240, PU241, PU244, PU252, PU263 of Pusa44 and SAR17, SAR23, SAR35, SAR39, SAR77, SAR87, SAR123, SAR136 NILs of Sarjoo52 confirmed tolerance to salinity with low salt injury score of 3 or 5. Ratio of Na+/K+ content of Saltol NILs ranged from 1.26 to 1.85 in Pusa44 and 1.08 to 1.69 in Sarjoo52. The successfully developed NILs were further phenotyped stringently for morphological traits to estimate Phenotypic Recovery. Background selection of NILs along with parents was carried out with 50K SNP chip and recovered 94.83-98.38% in Pusa44 NILs and 94.51 to 98.31% in Sarjoo52 NILs of recurrent genome. The present study of MAB has accelerated the development of salt tolerant lines in the genetic background of Pusa44 and Sarjoo52. These NILs could be used for commercial cultivation in saline affected area.
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Affiliation(s)
- S. L. Krishnamurthy
- Division of Crop Improvement, ICAR-Central Soil Salinity Research Institute, Karnal, India
- *Correspondence: S. L. Krishnamurthy, ; Parbodh Chander Sharma,
| | - Preeti Pundir
- Division of Crop Improvement, ICAR-Central Soil Salinity Research Institute, Karnal, India
| | | | - Suman Rathor
- Division of Crop Improvement, ICAR-Central Soil Salinity Research Institute, Karnal, India
| | - B. M. Lokeshkumar
- Division of Crop Improvement, ICAR-Central Soil Salinity Research Institute, Karnal, India
| | - Nagendra Kumar Singh
- Rice Genomics Laboratory, ICAR-National Institute for Plant Biotechnology, New Delhi, India
| | - Parbodh Chander Sharma
- Division of Crop Improvement, ICAR-Central Soil Salinity Research Institute, Karnal, India
- *Correspondence: S. L. Krishnamurthy, ; Parbodh Chander Sharma,
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Wang X, Cheng R, Zhu H, Cheng X, Shutes B, Yan B. Seed germination and early seedling growth of six wetland plant species in saline-alkaline environment. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2020; 22:1185-1194. [PMID: 32281893 DOI: 10.1080/15226514.2020.1748565] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
This study focused on the effect of saline and alkaline stress on six typical wetland plant species during seed germination and early seedling growth stages. Based on the indicators of germination, seedling growth and ionic absorption in seedlings, relatively saline and alkaline tolerant plant species were selected and tolerance mechanism was discussed. Results showed that the existence of saline and alkaline stress inhibited the capacity of germination and early seedling growth of most tested plant species to varying degrees, therein effects of saline-alkaline stress were greater than saline stress. Based on the results of principal component analysis (PCA), germination percentage, K+ content, plant height, Na+ content and Na+/K+ ratios can be selected as representative indicators for saline and alkaline tolerance evaluation during seed germination and early seedling growth stages. Among tested species, Juncus effusus and Vetiveria zizanioides exhibited relatively higher saline and alkaline tolerant capacity during their seed germination and early seedling growth. Additionally, both species increase K+ accumulation and retain lower Na+/K+ ratios, which might be their tolerance mechanisms at ion level. In conclusion, V. zizaniodes and J. effusus were recommended as potential plant species for restoring degraded saline-alkaline wetlands and/or establishing constructed wetlands for treating saline wastewater.
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Affiliation(s)
- Xinyi Wang
- School of Environmental Science, Liaoning University, Shenyang, China
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Rui Cheng
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
- Department of Resource and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Hui Zhu
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Xianwei Cheng
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
| | - Brian Shutes
- Department of Natural Sciences, Middlesex University, Hendon, UK
| | - Baixing Yan
- Key Laboratory of Wetland Ecology and Environment, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, China
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Rajappa S, Krishnamurthy P, Kumar PP. Regulation of AtKUP2 Expression by bHLH and WRKY Transcription Factors Helps to Confer Increased Salt Tolerance to Arabidopsis thaliana Plants. FRONTIERS IN PLANT SCIENCE 2020; 11:1311. [PMID: 32983201 PMCID: PMC7477289 DOI: 10.3389/fpls.2020.01311] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Accepted: 08/11/2020] [Indexed: 05/02/2023]
Abstract
Potassium transporters play an essential role in maintaining cellular ion homeostasis, turgor pressure, and pH, which are critical for adaptation under salt stress. We identified a salt responsive Avicennia officinalis KUP/HAK/KT transporter family gene, AoKUP2, which has high sequence similarity to its Arabidopsis ortholog AtKUP2. These genes were functionally characterized in mutant yeast cells and Arabidopsis plants. Both AoKUP2 and AtKUP2 were induced by salt stress, and AtKUP2 was primarily induced in roots. Subcellular localization revealed that AoKUP2 and AtKUP2 are localized to the plasma membrane and mitochondria. Expression of AtKUP2 and AoKUP2 in Saccharomyces cerevisiae mutant strain (BY4741 trk1Δ::loxP trk2Δ::loxP) helped to rescue the growth defect of the mutant under different NaCl and K+ concentrations. Furthermore, constitutive expression of AoKUP2 and AtKUP2 conferred enhanced salt tolerance in Arabidopsis indicated by higher germination rate, better survival, and increased root and shoot length compared to the untreated controls. Analysis of Na+ and K+ contents in the shoots and roots showed that ectopic expression lines accumulated less Na+ and more K+ than the WT. Two stress-responsive transcription factors, bHLH122 and WRKY33, were identified as direct regulators of AtKUP2 expression. Our results suggest that AtKUP2 plays a key role in enhancing salt stress tolerance by maintaining cellular ion homeostasis.
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Affiliation(s)
- Sivamathini Rajappa
- Department of Biological Sciences, National University of Singapore, Singapore, Singapore
| | - Pannaga Krishnamurthy
- NUS Environmental Research Institute (NERI), National University of Singapore, Singapore, Singapore
| | - Prakash P. Kumar
- Department of Biological Sciences, National University of Singapore, Singapore, Singapore
- NUS Environmental Research Institute (NERI), National University of Singapore, Singapore, Singapore
- *Correspondence: Prakash P. Kumar,
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234
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Egamberdieva D, Wirth S, Bellingrath-Kimura SD, Mishra J, Arora NK. Salt-Tolerant Plant Growth Promoting Rhizobacteria for Enhancing Crop Productivity of Saline Soils. Front Microbiol 2019; 10:2791. [PMID: 31921005 PMCID: PMC6930159 DOI: 10.3389/fmicb.2019.02791] [Citation(s) in RCA: 175] [Impact Index Per Article: 35.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Accepted: 11/18/2019] [Indexed: 11/13/2022] Open
Abstract
Soil salinity has emerged as a serious issue for global food security. It is estimated that currently about 62 million hectares or 20 percent of the world's irrigated land is affected by salinity. The deposition of an excess amount of soluble salt in cultivable land directly affects crop yields. The uptake of high amount of salt inhibits diverse physiological and metabolic processes of plants even impacting their survival. The conventional methods of reclamation of saline soil which involve scraping, flushing, leaching or adding an amendment (e.g., gypsum, CaCl2, etc.) are of limited success and also adversely affect the agro-ecosystems. In this context, developing sustainable methods which increase the productivity of saline soil without harming the environment are necessary. Since long, breeding of salt-tolerant plants and development of salt-resistant crop varieties have also been tried, but these and aforesaid conventional approaches are not able to solve the problem. Salt tolerance and dependence are the characteristics of some microbes. Salt-tolerant microbes can survive in osmotic and ionic stress. Various genera of salt-tolerant plant growth promoting rhizobacteria (ST-PGPR) have been isolated from extreme alkaline, saline, and sodic soils. Many of them are also known to mitigate various biotic and abiotic stresses in plants. In the last few years, potential PGPR enhancing the productivity of plants facing salt-stress have been researched upon suggesting that ST-PGPR can be exploited for the reclamation of saline agro-ecosystems. In this review, ST-PGPR and their potential in enhancing the productivity of saline agro-ecosystems will be discussed. Apart from this, PGPR mediated mechanisms of salt tolerance in different crop plants and future research trends of using ST-PGPR for reclamation of saline soils will also be highlighted.
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Affiliation(s)
- Dilfuza Egamberdieva
- CAS Key Laboratory of Biogeography and Bioresource in Arid Land, Xinjiang Institute of Ecology and Geography, Ürümqi, China
- Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, Germany
- Faculty of Biology, National University of Uzbekistan, Tashkent, Uzbekistan
| | - Stephan Wirth
- Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, Germany
| | | | - Jitendra Mishra
- DST-CPR, Babasaheb Bhimrao Ambedkar University, Lucknow, India
| | - Naveen K. Arora
- Department of Environmental Science, Babasaheb Bhimrao Ambedkar University, Lucknow, India
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235
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Yang X, Lin R, Zhang W, Xu Y, Wei X, Zhuo C, Qin J, Li H. Comparison of Cd subcellular distribution and Cd detoxification between low/high Cd-accumulative rice cultivars and sea rice. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2019; 185:109698. [PMID: 31574370 DOI: 10.1016/j.ecoenv.2019.109698] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Revised: 09/17/2019] [Accepted: 09/18/2019] [Indexed: 06/10/2023]
Abstract
Salt-tolerant rice cultivar (sea rice) is a research hotspot worldwide due to its high yield in high salinity soil. However, knowledge regarding the cadmium (Cd) effects on the growth of sea rice is limited. To determine the short-term and long-term impact of Cd stress, relatively low/high Cd-accumulative rice cultivars and sea rice were grown to compare their growth responses to Cd stress over time. The results showed that sea rice presented the highest Cd concentrations in the root, stem, and leaves under 32-days of Cd stress. Cd stress shortened and thickened the rice root, and decreased the proportion of root diameters in the 0-0.2 mm range. Cd stress remarkably increased the Cd and Fe concentration in dithionite-citrate-bicarbonate (DCB) extracts, and the DCB-Cd and DCB-Fe concentrations were the highest in sea rice. The subcellular distribution of Cd in the rice roots indicated that Cd accumulated the most in the soluble fraction and cell wall. The contents of pectin and hemicellulose 2 in the root cell wall of the low-Cd accumulative rice variety CL755 were higher than those in MXZ and sea rice. Collectively, this work provides a general understanding of the Cd effects on sea rice growth and indicates that sea rice has a relatively high Cd accumulation compared with the other two rice cultivars. However, the specifically-related mechanism remains to be further studied.
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Affiliation(s)
- Xu Yang
- Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture of the People's Republic of China, South China Agricultural University, Guangzhou, 510642, China; Guangdong Engineering Research Center for Modern Eco-agriculture and Circular Agriculture/Key Laboratory of Eco-agriculture and Circular Agriculture of Guangdong Province, Guangzhou, 510642, PR China
| | - Rongkai Lin
- Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture of the People's Republic of China, South China Agricultural University, Guangzhou, 510642, China
| | - Wenyuan Zhang
- Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture of the People's Republic of China, South China Agricultural University, Guangzhou, 510642, China; Guangdong Engineering Research Center for Modern Eco-agriculture and Circular Agriculture/Key Laboratory of Eco-agriculture and Circular Agriculture of Guangdong Province, Guangzhou, 510642, PR China
| | - Yongkang Xu
- Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture of the People's Republic of China, South China Agricultural University, Guangzhou, 510642, China
| | - Xin Wei
- Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture of the People's Republic of China, South China Agricultural University, Guangzhou, 510642, China; Guangdong Engineering Research Center for Modern Eco-agriculture and Circular Agriculture/Key Laboratory of Eco-agriculture and Circular Agriculture of Guangdong Province, Guangzhou, 510642, PR China
| | - Chen Zhuo
- Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture of the People's Republic of China, South China Agricultural University, Guangzhou, 510642, China; Guangdong Engineering Research Center for Modern Eco-agriculture and Circular Agriculture/Key Laboratory of Eco-agriculture and Circular Agriculture of Guangdong Province, Guangzhou, 510642, PR China
| | - Junhao Qin
- Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture of the People's Republic of China, South China Agricultural University, Guangzhou, 510642, China; Guangdong Engineering Research Center for Modern Eco-agriculture and Circular Agriculture/Key Laboratory of Eco-agriculture and Circular Agriculture of Guangdong Province, Guangzhou, 510642, PR China
| | - Huashou Li
- Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture of the People's Republic of China, South China Agricultural University, Guangzhou, 510642, China; Guangdong Engineering Research Center for Modern Eco-agriculture and Circular Agriculture/Key Laboratory of Eco-agriculture and Circular Agriculture of Guangdong Province, Guangzhou, 510642, PR China.
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Khan A, Khan AL, Muneer S, Kim YH, Al-Rawahi A, Al-Harrasi A. Silicon and Salinity: Crosstalk in Crop-Mediated Stress Tolerance Mechanisms. FRONTIERS IN PLANT SCIENCE 2019; 10:1429. [PMID: 31787997 PMCID: PMC6853871 DOI: 10.3389/fpls.2019.01429] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2019] [Accepted: 10/15/2019] [Indexed: 05/06/2023]
Abstract
Salinity stress hinders the growth potential and productivity of crop plants by influencing photosynthesis, disturbing the osmotic and ionic concentrations, producing excessive oxidants and radicals, regulating endogenous phytohormonal functions, counteracting essential metabolic pathways, and manipulating the patterns of gene expression. In response, plants adopt counter mechanistic cascades of physio-biochemical and molecular signaling to overcome salinity stress; however, continued exposure can overwhelm the defense system, resulting in cell death and the collapse of essential apparatuses. Improving plant vigor and defense responses can thus increase plant stress tolerance and productivity. Alternatively, the quasi-essential element silicon (Si)-the second-most abundant element in the Earth's crust-is utilized by plants and applied exogenously to combat salinity stress and improve plant growth by enhancing physiological, metabolomic, and molecular responses. In the present review, we elucidate the potential role of Si in ameliorating salinity stress in crops and the possible mechanisms underlying Si-associated stress tolerance in plants. This review also underlines the need for future research to evaluate the role of Si in salinity stress in plants and the identification of gaps in the understanding of this process as a whole at a broader field level.
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Affiliation(s)
- Adil Khan
- Natural & Medical Sciences Research Center, University of Nizwa, Nizwa, Oman
| | - Abdul Latif Khan
- Natural & Medical Sciences Research Center, University of Nizwa, Nizwa, Oman
| | - Sowbiya Muneer
- School of Agricultural Innovations and Advanced Learning, Vellore Institute of Technology, Vellore, India
| | - Yoon-Ha Kim
- School of Applied Biosciences, Kyungpook National University, Daegu, South Korea
| | - Ahmed Al-Rawahi
- Natural & Medical Sciences Research Center, University of Nizwa, Nizwa, Oman
| | - Ahmed Al-Harrasi
- Natural & Medical Sciences Research Center, University of Nizwa, Nizwa, Oman
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237
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Shohan MUS, Sinha S, Nabila FH, Dastidar SG, Seraj ZI. HKT1;5 Transporter Gene Expression and Association of Amino Acid Substitutions With Salt Tolerance Across Rice Genotypes. FRONTIERS IN PLANT SCIENCE 2019; 10:1420. [PMID: 31749823 PMCID: PMC6843544 DOI: 10.3389/fpls.2019.01420] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2019] [Accepted: 10/14/2019] [Indexed: 05/20/2023]
Abstract
Plants need to maintain a low Na+/K+ ratio for their survival and growth when there is high sodium concentration in soil. Under these circumstances, the high affinity K+ transporter (HKT) and its homologs are known to perform a critical role with HKT1;5 as a major player in maintaining Na+ concentration. Preferential expression of HKT1;5 in roots compared to shoots was observed in rice and rice-like genotypes from real time PCR, microarray, and RNAseq experiments and data. Its expression trend was generally higher under increasing salt stress in sensitive IR29, tolerant Pokkali, both glycophytes; as well as the distant wild rice halophyte, Porteresia coarctata, indicative of its importance during salt stress. These results were supported by a low Na+/K+ ratio in Pokkali, but a much lower one in P. coarctata. HKT1;5 has functional variability among salt sensitive and tolerant varieties and multiple sequence alignment of sequences of HKT1;5 from Oryza species and P. coarctata showed 4 major amino acid substitutions (140 P/A/T/I, 184 H/R, D332H, V395L), with similarity amongst the tolerant genotypes and the halophyte but in variance with sensitive ones. The best predicted 3D structure of HKT1;5 was generated using Ktrab potassium transporter as template. Among the four substitutions, conserved presence of aspartate (332) and valine (395) in opposite faces of the membrane along the Na+/K+ channel was observed only for the tolerant and halophytic genotypes. A model based on above, as well as molecular dynamics simulation study showed that valine is unable to generate strong hydrophobic network with its surroundings in comparison to leucine due to reduced side chain length. The resultant alteration in pore rigidity increases the likelihood of Na+ transport from xylem sap to parenchyma and further to soil. The model also proposes that the presence of aspartate at the 332 position possibly leads to frequent polar interactions with the extracellular loop polar residues which may shift the loop away from the opening of the constriction at the pore and therefore permit easy efflux of the Na+. These two substitutions of the HKT1;5 transporter probably help tolerant varieties maintain better Na+/K+ ratio for survival under salt stress.
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Affiliation(s)
- Mohammad Umer Sharif Shohan
- Plant Biotechnology Laboratory, Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, Bangladesh
| | - Souvik Sinha
- Division of Bioinformatics, Bose Institute, Kolkata, India
| | - Fahmida Habib Nabila
- Plant Biotechnology Laboratory, Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, Bangladesh
| | | | - Zeba I. Seraj
- Plant Biotechnology Laboratory, Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, Bangladesh
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238
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Tan X, Long W, Zeng L, Ding X, Cheng Y, Zhang X, Zou X. Melatonin-Induced Transcriptome Variation of Rapeseed Seedlings under Salt Stress. Int J Mol Sci 2019; 20:ijms20215355. [PMID: 31661818 PMCID: PMC6862158 DOI: 10.3390/ijms20215355] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2019] [Revised: 10/16/2019] [Accepted: 10/23/2019] [Indexed: 12/20/2022] Open
Abstract
Salt stress inhibits the production of all crop species, including rapeseed (Brassica napus L.), the second most widely planted oil crop species. Although melatonin was confirmed to alleviate salt stress in rapeseed seedlings recently, the mechanism governing the expression levels remains unknown. Therefore, the melatonin-induced transcriptome variation of salt-stressed seedlings was explored. In this study, the transcriptomes of leaves and roots under control (CK), salt (125 mM NaCl, ST) and melatonin (125 mM NaCl plus 50 µM melatonin, MS) treatments were evaluated by using next-generation sequencing techniques. After conducting comparisons of gene expression in the roots and leaves between MS and ST, the differentially expressed gene (DEG) pools were screened. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses highlighted the significant pathways, which were mainly related to plant hormone synthesis and signal transduction, lignin and fatty acid metabolism. The functional genes in the objective KEGG pathways were identified. Furthermore, members of several transcription factor (TF) families participated in the response process. Combined with the hormone (campesterol (CS), jasmonic acid (JA), and gibberellic acid 3 (GA3)) contents measured in the seedlings, it could be concluded that melatonin induced changes in the intrinsic hormone metabolic network, which promoted seedling growth. Thus, this study identified new candidate genes and pathways active during the interactions between melatonin and salt stress, which provide clues for disclosing melatonin’s function in resistance to salt injury. Our results contribute to developing a practical method for sustainable agriculture on saline lands.
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Affiliation(s)
- Xiaoyu Tan
- Key Lab of Biology and Genetic Improvement of Oil Crops of Ministry of Agriculture and Rural Affairs, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
- College of Plant Science and Technology of Huazhong Agricultural University, Wuhan 430070, China.
| | - Weihua Long
- Key Lab of Biology and Genetic Improvement of Oil Crops of Ministry of Agriculture and Rural Affairs, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
- Key Lab of Cotton and Rapeseed (Nanjing) of Ministry of Agriculture and Rural Affairs, Institute of the Industrial Crops, Jiangsu Academy of Agriculture Sciences, Nanjing 210014, China.
| | - Liu Zeng
- Key Lab of Biology and Genetic Improvement of Oil Crops of Ministry of Agriculture and Rural Affairs, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
| | - Xiaoyu Ding
- Key Lab of Biology and Genetic Improvement of Oil Crops of Ministry of Agriculture and Rural Affairs, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
| | - Yong Cheng
- Key Lab of Biology and Genetic Improvement of Oil Crops of Ministry of Agriculture and Rural Affairs, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
| | - Xuekun Zhang
- Key Lab of Biology and Genetic Improvement of Oil Crops of Ministry of Agriculture and Rural Affairs, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
| | - Xiling Zou
- Key Lab of Biology and Genetic Improvement of Oil Crops of Ministry of Agriculture and Rural Affairs, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan 430062, China.
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239
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Ye Y, Lin R, Su H, Chen H, Luo M, Yang L, Zhang M. The functional identification of glycine-rich TtASR from Tetragonia tetragonoides (Pall.) Kuntze involving in plant abiotic stress tolerance. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 143:212-223. [PMID: 31518852 DOI: 10.1016/j.plaphy.2019.09.013] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Revised: 09/06/2019] [Accepted: 09/06/2019] [Indexed: 06/10/2023]
Abstract
In this study, we reported on an ASR gene (TtASR) related to salt/drought tolerance from the edible halophyte Tetragonia tetragonoides (Pall.) Kuntze (Aizoaceae). A phylogenetic analysis revealed that TtASR was evolutionarily close to other two halophytic glycine-rich ASR members, SbASR-1 (from Salicornia brachiate) and SlASR (from Suaeda liaotungensis), with a typical abscisic acid (ABA)/water-deficit stress (WDS) domain at C-terminal. Quantitative RT-PCR analyses showed that TtASR was expressed in all tested different organs of the T. tetragonoides plant and that expression levels were apparently induced after salt, osmotic stress, and ABA treatments in T. tetragonoides seedlings. An induction of TtASR improved the growth performance of yeast and bacteria more than the control under high salinity, osmotic stress, and oxidative stress. TtASR was not a nuclear-specific protein in plant, and the transcriptional activation assay also demonstrated that TtASR could not activate reporter gene's expression in yeast. TtASR overexpressed Arabidopsis plants exhibited higher tolerance for salt/drought and oxidative stresses and lower ROS accumulation than wild type (WT) plants, accompanied by increased CAT, SOD activities, higher proline content, and lower MDA content in vivo. The results indicated that the TtASR was involved in plant responses to salt and drought, probably by mediating water homeostasis or by acting as ROS scavengers, and that it decreased the membrane damage and improved cellular osmotic adjustment that respond to abiotic stresses in microorganisms and plants.
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Affiliation(s)
- Yuyan Ye
- School of Life Sciences, Guangzhou University, Guangzhou, 510006, PR China.
| | - Ruoyi Lin
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China; Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, PR China; College of Resources and Environment, University of the Chinese Academy of Sciences, Beijing, 100039, PR China.
| | - Huaxiang Su
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China; Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, PR China; College of Life Sciences, University of the Chinese Academy of Sciences, Beijing, 100039, PR China.
| | - Hongfeng Chen
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China; Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, PR China.
| | - Ming Luo
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China; Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, PR China.
| | - Lixiang Yang
- School of Life Sciences, Guangzhou University, Guangzhou, 510006, PR China.
| | - Mei Zhang
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China; Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, PR China.
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240
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van Bezouw RFHM, Janssen EM, Ashrafuzzaman M, Ghahramanzadeh R, Kilian B, Graner A, Visser RGF, van der Linden CG. Shoot sodium exclusion in salt stressed barley (Hordeum vulgare L.) is determined by allele specific increased expression of HKT1;5. JOURNAL OF PLANT PHYSIOLOGY 2019; 241:153029. [PMID: 31499444 DOI: 10.1016/j.jplph.2019.153029] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2019] [Revised: 08/09/2019] [Accepted: 08/11/2019] [Indexed: 06/10/2023]
Abstract
High affinity potassium transporters (HKT) are recognized as important genes for crop salt tolerance improvement. In this study, we investigated HvHKT1;5 as a candidate gene for a previously discovered quantitative trait locus that controls shoot Na+ and Na+/K+ ratio in salt-stressed barley lines on a hydroponic system. Two major haplotype groups could be distinguished for this gene in a barley collection of 95 genotypes based on the presence of three intronic insertions; a designated haplotype group A (HGA, same as reference sequence) and haplotype group B (HGB, with insertions). HGB was associated with a much stronger root expression of HKT1;5 compared to HGA, and consequently higher K+ and lower Na+ and Cl- concentrations and a lower Na+/K+ ratio in the shoots three weeks after exposure to 200 mM NaCl. Our experimental results suggest that allelic variation in the promoter region of the HGB gene is linked to the three insertions may be responsible for the observed increase in expression of HvHKT1;5 alleles after one week of salt stress induction. This study shows that in barley - similar to wheat and rice - HKT1;5 is an important contributor to natural variation in shoot Na+ exclusion.
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Affiliation(s)
- Roel F H M van Bezouw
- Wageningen University and Research, Plant Breeding, PO Box 386, 6700 AJ, Wageningen, the Netherlands.
| | - Elly M Janssen
- Wageningen University and Research, Plant Breeding, PO Box 386, 6700 AJ, Wageningen, the Netherlands
| | - Md Ashrafuzzaman
- Wageningen University and Research, Plant Breeding, PO Box 386, 6700 AJ, Wageningen, the Netherlands
| | - Robab Ghahramanzadeh
- Wageningen University and Research, Plant Breeding, PO Box 386, 6700 AJ, Wageningen, the Netherlands
| | - Benjamin Kilian
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Seeland, Germany; Global Crop Diversity Trust, 53113, Bonn, Germany
| | - Andreas Graner
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Seeland, Germany
| | - Richard G F Visser
- Wageningen University and Research, Plant Breeding, PO Box 386, 6700 AJ, Wageningen, the Netherlands
| | - C Gerard van der Linden
- Wageningen University and Research, Plant Breeding, PO Box 386, 6700 AJ, Wageningen, the Netherlands
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241
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Zhao W, Jung S, Schubert S. Transcription profile analysis identifies marker genes to distinguish salt shock and salt stress after stepwise acclimation in Arabidopsis thaliana and Zea mays. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 143:232-245. [PMID: 31521962 DOI: 10.1016/j.plaphy.2019.09.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Accepted: 09/03/2019] [Indexed: 06/10/2023]
Abstract
Many physiological and molecular responses to salt stress have been investigated after a salt shock. However, salt shock rarely happens in agricultural practice. In the field, salts accumulate gradually due to poor agricultural management. Thus in salinity research, it is more reasonable to investigate plant reaction after stepwise acclimation to salt stress. Previous studies demonstrate that salt shock induces Phase 0, a short-term effect that shows transient water loss and rapid turgor decrease; salt stress after stepwise acclimation avoids Phase 0 effects and induces Phase 1. During Phase 1, plants show maintenance of turgor. In this study, salt shock and stepwise acclimation to salt stress were separated at physiological and transcriptional levels. Four major experiments were conducted: 1) leaf turgor changes were monitored in real time after salt application to separate Phase 0 and Phase 1 effects at the physiological level, 2) RNA-sequence analysis was conducted in Arabidopsis thaliana L. to identify potential marker genes that are involved in plant water relations to distinguish Phase 0 and Phase 1 at transcript level, 3) these selected marker gene candidates were identified in Arabidopsis at different Phase 0 and Phase 1 time points via qRT-PCR, 4) these candidates were further evaluated in Zea mays L. (a model plant for applied research in plant physiology and an important crop plant) via qRT-PCR. In future salinity research, marker genes that are both applicable in Arabidopsis and maize have the potential to differentiate salt shock and stepwise acclimation to salt stress.
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Affiliation(s)
- Wenting Zhao
- Institute of Plant Nutrition (iFZ), Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392, Giessen, Germany.
| | - Stephan Jung
- Institute of Plant Nutrition (iFZ), Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392, Giessen, Germany
| | - Sven Schubert
- Institute of Plant Nutrition (iFZ), Justus Liebig University, Heinrich-Buff-Ring 26-32, 35392, Giessen, Germany
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Dadshani S, Sharma RC, Baum M, Ogbonnaya FC, Léon J, Ballvora A. Multi-dimensional evaluation of response to salt stress in wheat. PLoS One 2019; 14:e0222659. [PMID: 31568491 PMCID: PMC6768486 DOI: 10.1371/journal.pone.0222659] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2019] [Accepted: 09/03/2019] [Indexed: 11/19/2022] Open
Abstract
Soil salinity is a major threat to crop production worldwide. The global climate change is further accelerating the process of soil salinization, particularly in dry areas of the world. Increasing genetic variability of currently used wheat varieties by introgression of exotic alleles/genes from related progenitors' species in breeding programs is an efficient approach to overcome limitations due to the absence of valuable genetic diversity in elite cultivars. Synthetic hexaploid wheat (SHW) is widely regarded as donor of favourable exotic alleles to improve tolerance against biotic and abiotic stresses such as salinity stress. In this study, synthetic backcross lines (SBLs) winter wheat population "Z86", derived from crosses involving synthetic hexaploid wheat Syn86L with German elite winter wheat cultivar Zentos, was evaluated for salinity tolerance at different developmental stages under controlled and field conditions in three growing seasons. High genetic variability was detected across the SBLs and their parents at various growth stages under controlled as well as under salt stress field trials. Greater performance of Zentos over Syn86L was detected at germination stage across all salt treatments and with respect to shoot dry weight (SDW) and root dry weight (RDW) at seedling stage. Whereas for the root length (RL) and the shoot length (SL) Syn86L surpassed the elite cultivar and most of the progenies. Our experiments revealed for almost all traits that some genotypes among the SBLs showed higher performance than their parents. Furthermore, positive transgressive segregations were detected among the SBLs for germination at high salinity levels, as well as for RDW and SDW at seedling stage. Therefore, the studied Z86 population is a suitable population for assessment of salinity stress on morphological and physiological traits at different plant growth stages. The identified SBLs provide a valuable source for genetic gain through recombination of superior alleles that can be directly applied in breeding programs for efficiently breeding cultivars with improved salinity tolerance and desired agronomic traits.
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Affiliation(s)
- Said Dadshani
- INRES Plant Breeding, Rheinische Friedrich-Wilhelms-University, Bonn, Germany
| | - Ram C. Sharma
- International Center for Agricultural Research in the Dry Areas (ICARDA), Tashkent, Uzbekistan
| | - Michael Baum
- International Center for Agricultural Research in the Dry Areas (ICARDA), Rabat, Morocco
| | | | - Jens Léon
- INRES Plant Breeding, Rheinische Friedrich-Wilhelms-University, Bonn, Germany
| | - Agim Ballvora
- INRES Plant Breeding, Rheinische Friedrich-Wilhelms-University, Bonn, Germany
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243
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Pandey A, Khan MK, Hakki EE, Gezgin S, Hamurcu M. Combined Boron Toxicity and Salinity Stress-An Insight into Its Interaction in Plants. PLANTS (BASEL, SWITZERLAND) 2019; 8:E364. [PMID: 31547605 PMCID: PMC6843824 DOI: 10.3390/plants8100364] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/01/1970] [Revised: 09/11/2019] [Accepted: 09/17/2019] [Indexed: 12/11/2022]
Abstract
The continuously changing environment has intensified the occurrence of abiotic stress conditions. Individually, boron (B) toxicity and salinity stress are well recognized as severe stress conditions for plants. However, their coexistence in arid and semi-arid agricultural regions has shown ambiguous effects on plant growth and development. Few studies have reported that combined boron toxicity and high salinity stress have more damaging effects on plant growth than individual B and salt stress, while other studies have highlighted less damaging effects of the combined stress. Hence, it is interesting to understand the positive interaction of this combined stress so that it can be effectively employed for the improvement of crops that generally show the negative effects of this combined stress. In this review, we discussed the possible processes that occur in plants in response to this combined stress condition. We highly suggest that the combined B and salinity stress condition should be considered as a novel stress condition by researchers; hence, we recommend the name "BorSal" for this combined boron toxicity and high salinity state in the soil. Membrane-bound activities, mobility of ions, water transport, pH changes, transpiration, photosynthesis, antioxidant activities, and different molecular transporters are involved in the effects of BorSal interaction in plants. The discussed mechanisms indicate that the BorSal stress state should be studied in light of the involved physiological and molecular processes that occur after B and salt interaction in plants.
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Affiliation(s)
- Anamika Pandey
- Department of Soil Science and Plant Nutrition, Faculty of Agriculture, Selcuk University, Konya 42079, Turkey.
| | - Mohd Kamran Khan
- Department of Soil Science and Plant Nutrition, Faculty of Agriculture, Selcuk University, Konya 42079, Turkey.
| | - Erdogan Esref Hakki
- Department of Soil Science and Plant Nutrition, Faculty of Agriculture, Selcuk University, Konya 42079, Turkey.
| | - Sait Gezgin
- Department of Soil Science and Plant Nutrition, Faculty of Agriculture, Selcuk University, Konya 42079, Turkey.
| | - Mehmet Hamurcu
- Department of Soil Science and Plant Nutrition, Faculty of Agriculture, Selcuk University, Konya 42079, Turkey.
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Characterization of natural genetic variation identifies multiple genes involved in salt tolerance in maize. Funct Integr Genomics 2019; 20:261-275. [PMID: 31522293 DOI: 10.1007/s10142-019-00707-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2019] [Revised: 08/02/2019] [Accepted: 08/08/2019] [Indexed: 01/03/2023]
Abstract
Progressive decline in irrigation water is forcing farmers to use brackish water which increases soil salinity and exposes the crop plants to salinity. Maize, one of the most important crops, is sensitive to salinity. Salt tolerance is a complex trait controlled by a number of physiological and biochemical processes. Scant information is available on the genetic architecture of salt tolerance in maize. We evaluated 399 inbred lines for six early vigor shoot and root traits upon exposure of 18-day seedlings to salinity (ECiw = 16 dS m-1) stress. Contrasting response of shoot and root growth to salinity indicated a meticulous reprogramming of resource partitioning by the plants to cope with the stress. The genomic analysis identified 57 single nucleotide polymorphisms (SNP) associated with early vigor traits. Candidate genes systematically associated with each SNP include both previously known and novel genes. Important candidates include a late embryogenesis protein, a divalent ion symporter, a proton extrusion protein, an RNA-binding protein, a casein kinase 1, and an AP2/EREBP transcription factor. The late embryogenesis protein is associated with both shoot and root length, indicating a coordinated change in resource allocation upon salt stress. Identification of a casein kinase 1 indicates an important role for Ser/Thr kinases in salt tolerance. Validation of eight candidates based on expression in a salt-tolerant and a salt-sensitive inbred line supported their role in salt tolerance. The candidate genes identified in this investigation provide a foundation for dissecting genetic and molecular regulation of salt tolerance in maize and related grasses.
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245
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Tsai YC, Chen KC, Cheng TS, Lee C, Lin SH, Tung CW. Chlorophyll fluorescence analysis in diverse rice varieties reveals the positive correlation between the seedlings salt tolerance and photosynthetic efficiency. BMC PLANT BIOLOGY 2019; 19:403. [PMID: 31519149 PMCID: PMC6743182 DOI: 10.1186/s12870-019-1983-8] [Citation(s) in RCA: 51] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Accepted: 08/21/2019] [Indexed: 05/22/2023]
Abstract
BACKGROUND Photosynthetic efficiency might be a key factor determining plant resistance to abiotic stresses. Plants can sense when growing conditions are not favorable and trigger an internal response at an early stage before showing external symptoms. When a high amount of salt enters the plant cell, the membrane system and function of thylakoids in chloroplasts could be destroyed and affect photosynthetic performance if the salt concentration is not regulated to optimal values. Oryza species have salt-tolerant and salt-sensitive genotypes; however, very few studies have investigated the genetic architecture responsible for photosynthetic efficiency under salinity stress in cultivated rice. RESULTS We used an imaging-based chlorophyll fluorometer to monitor eight rice varieties that showed different salt tolerance levels for four consecutive days under control and salt conditions. An analysis of the changes in chlorophyll fluorescence parameters clearly showed the maximum quantum efficiency of PSII in sensitive varieties was significantly reduced after NaCl treatment when compared to tolerant varieties. A panel of 232 diverse rice accessions was then analyzed for chlorophyll fluorescence under salt conditions, the results showed that chlorophyll fluorescence parameters such as F0 and NPQ were higher in Japonica subspecies, ΦPSII of Indica varieties was higher than that in other subgroups, which suggested that the variation in photosynthetic efficiency was extensively regulated under salt treatment in diverse cultivated rice. Two significant regions on chromosome 5 were identified to associate with the fraction of open PSII centers (qL) and the minimum chlorophyll fluorescence (F0). These regions harbored genes related to senescence, chloroplast biogenesis and response to salt stress are of interest for future functional characterization to determine their roles in regulating photosynthesis. CONCLUSIONS Rice plant is very sensitive to salinity stress, especially at young seedling stage. Our work identified the distribution pattern of chlorophyll fluorescence parameters in seedlings leaf and their correlations with salt tolerance level in a diverse gene pool. We also revealed the complexity of the genetic architecture regulating rice seedling photosynthetic performance under salinity stress, the germplasm analyzed in this study and the associated genetic information could be utilized in rice breeding program.
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Affiliation(s)
- Yu-Chang Tsai
- Department of Agronomy, National Taiwan University, No. 1, Sec. 4, Roosevelt Rd, Taipei, 10617 Taiwan
| | - Kuan-Chuan Chen
- Department of Agronomy, National Taiwan University, No. 1, Sec. 4, Roosevelt Rd, Taipei, 10617 Taiwan
| | - Tung-Shan Cheng
- Department of Agronomy, National Taiwan University, No. 1, Sec. 4, Roosevelt Rd, Taipei, 10617 Taiwan
| | - Chuan Lee
- Department of Agronomy, National Taiwan University, No. 1, Sec. 4, Roosevelt Rd, Taipei, 10617 Taiwan
| | - Shih-Hung Lin
- Department of Agronomy, National Taiwan University, No. 1, Sec. 4, Roosevelt Rd, Taipei, 10617 Taiwan
| | - Chih-Wei Tung
- Department of Agronomy, National Taiwan University, No. 1, Sec. 4, Roosevelt Rd, Taipei, 10617 Taiwan
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246
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Chatzigianni M, Ntatsi G, Theodorou M, Stamatakis A, Livieratos I, Rouphael Y, Savvas D. Functional Quality, Mineral Composition and Biomass Production in Hydroponic Spiny Chicory ( Cichorium spinosum L.) Are Modulated Interactively by Ecotype, Salinity and Nitrogen Supply. FRONTIERS IN PLANT SCIENCE 2019; 10:1040. [PMID: 31555310 PMCID: PMC6727868 DOI: 10.3389/fpls.2019.01040] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2018] [Accepted: 07/26/2019] [Indexed: 06/10/2023]
Abstract
The hydroponic cultivation of spiny chicory (Cichorium spinosum L.), also known as stamnagathi, allows the development of year-round production. In the current study, two contrasting stamnagathi ecotypes originating from a montane and a coastal-marine habitat were supplied with nutrient solution containing 4 or 16 mM total-N in combination with 0.3, 20, or 40 mM NaCl. The primary aim of the experiment was to provide insight into salinity tolerance and nutrient needs in the two ecotypes, thereby contributing to breeding of more resilient cultivars to salinity and nutrient stress. Nutritional qualities of the stamnagathi genotypes were also tested. The coastal-marine ecotype was more salt tolerant in terms of fresh shoot biomass production and contained significantly more water and macro- and micro-nutrients in the shoot per dry weight unit. The root Na+ concentration was markedly lower in the coastal-marine compared to the montane ecotype. The leaf Na+ concentration was similar in both ecotypes at external NaCl concentrations up to 20 mM, but significantly higher in the montane compared to the coastal-marine ecotype at 40 mM NaCl. However, the leaf Cl- concentration was consistently higher in the coastal-marine than in the montane ecotype within each salinity level. The marine ecotype also exhibited significantly less total phenols, carotenoids, flavonoids, and chlorophyll compared to the montane ecotype across all treatments. Integrating all findings, it appears that at moderate salinity levels (20 mM), the higher salt tolerance of the coastal-marine ecotype is associated with mechanisms mitigating Na+ and Cl- toxicity within the leaf tissues, such as salt dilution imposed through increased leaf succulence. Nevertheless, at high external NaCl levels, Na+ exclusion may also contribute to enhanced salt tolerance of stamnagathi. Both ecotypes exhibited a high N-use efficiency, as their shoot biomass was not restricted when the total-N supply varied from 16 to 4 mM. The leaf organic-N was not influenced by salinity, while the interaction ecotype × N-supply-level was insignificant, indicating that the mechanisms involved in the salt tolerance difference between the two ecotypes was not linked with N-acquisition or -assimilation within the plant. The current results indicate that both ecotypes are promising germplasm resources for future breeding programs.
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Affiliation(s)
- Martina Chatzigianni
- Department of Crop Science, Laboratory of Vegetable Crops, Agricultural University of Athens, Athens, Greece
- Department of Sustainable Agriculture, Laboratory of Soil Science and Plant Diagnostics, Mediterranean Agronomic Institute of Chania, Chania, Greece
| | - Georgia Ntatsi
- Department of Crop Science, Laboratory of Vegetable Crops, Agricultural University of Athens, Athens, Greece
- Institute of Plant Breeding and Genetic Resources ELGO-DEMETER, Thessaloniki, Greece
| | - Maria Theodorou
- Department of Sustainable Agriculture, Laboratory of Soil Science and Plant Diagnostics, Mediterranean Agronomic Institute of Chania, Chania, Greece
| | - Aristidis Stamatakis
- Department of Sustainable Agriculture, Laboratory of Soil Science and Plant Diagnostics, Mediterranean Agronomic Institute of Chania, Chania, Greece
| | - Ioannis Livieratos
- Department of Sustainable Agriculture, Laboratory of Soil Science and Plant Diagnostics, Mediterranean Agronomic Institute of Chania, Chania, Greece
| | - Youssef Rouphael
- Department of Agricultural Sciences, University of Naples Federico II, Portici, Italy
| | - Dimitrios Savvas
- Department of Crop Science, Laboratory of Vegetable Crops, Agricultural University of Athens, Athens, Greece
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247
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Zhang Z, He K, Zhang T, Tang D, Li R, Jia S. Physiological responses of Goji berry (Lycium barbarum L.) to saline-alkaline soil from Qinghai region, China. Sci Rep 2019; 9:12057. [PMID: 31427658 PMCID: PMC6700091 DOI: 10.1038/s41598-019-48514-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2018] [Accepted: 08/05/2019] [Indexed: 11/20/2022] Open
Abstract
Recently, Goji berry (Lycium barbarum L.) has been extensively cultivated to improve the fragile ecological environment and increase the income of residents in Qinghai Province, northwestern China. However, few studies have focused on the physiological responses of Goji berry under salt stress and alkali stress. Gas exchange, photosynthetic pigments, and chlorophyll fluorescence were evaluated in response to neutral (NaCl) and alkali (NaHCO3) salt stresses. Nine irrigation treatments were applied over 30 days and included 0(Control group), 50, 100, 200, and 300 mM NaCl and NaHCO3. The results showed that salt and alkali stress reduced all the indicators and that alkali stress was more harmful to Goji berry than salt stress under the same solution concentrations. The salt tolerance and alkali resistance thresholds were identified when the index value exceeded the 50% standard of the control group, and threshold values of 246.3 ± 2.9 mM and 108.4.7 ± 2.1 mM, respectively, were determined by regression analysis. These results were used to identify the optimal water content for Goji berry. The minimum soil water content to cultivate Goji berry should be 16.22% and 23.37% under mild and moderate salt stress soils, respectively, and 29.10% and 42.68% under mild and moderate alkali stress soil, respectively.
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Affiliation(s)
- Zhenzhong Zhang
- School of Soil and Water Conservation, Beijing Forestry University, Beijing, China
- Key Laboratory of State Forestry Administration on Soil and Water Conservation, Beijing Forestry University, Beijing, China
- Beijing Engineering Research Center of Soil and Water Conservation, Beijing Forestry University, Beijing, China
- Engineering Research Center of Forestry Ecological Engineering of Ministry of Education, Beijing Forestry University, Beijing, China
| | - Kangning He
- School of Soil and Water Conservation, Beijing Forestry University, Beijing, China.
- Key Laboratory of State Forestry Administration on Soil and Water Conservation, Beijing Forestry University, Beijing, China.
- Beijing Engineering Research Center of Soil and Water Conservation, Beijing Forestry University, Beijing, China.
- Engineering Research Center of Forestry Ecological Engineering of Ministry of Education, Beijing Forestry University, Beijing, China.
| | - Tan Zhang
- School of Soil and Water Conservation, Beijing Forestry University, Beijing, China
- Key Laboratory of State Forestry Administration on Soil and Water Conservation, Beijing Forestry University, Beijing, China
- Beijing Engineering Research Center of Soil and Water Conservation, Beijing Forestry University, Beijing, China
- Engineering Research Center of Forestry Ecological Engineering of Ministry of Education, Beijing Forestry University, Beijing, China
| | - Da Tang
- School of Soil and Water Conservation, Beijing Forestry University, Beijing, China
- Key Laboratory of State Forestry Administration on Soil and Water Conservation, Beijing Forestry University, Beijing, China
- Beijing Engineering Research Center of Soil and Water Conservation, Beijing Forestry University, Beijing, China
- Engineering Research Center of Forestry Ecological Engineering of Ministry of Education, Beijing Forestry University, Beijing, China
- Power China Guiyang Engineering Corporation limited, Guiyang, Guizhou Province, China
| | - Runjie Li
- Institute of Water Resources and Hydropower of Qinghai Province, Xining, Qinghai Province, China
| | - Shaofeng Jia
- Institute of Geographical Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
- Key Laboratory of Water Cycle and Related Land Surface Processes, Chinese Academy of Sciences, Beijing, China
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Albdaiwi RN, Khyami-Horani H, Ayad JY, Alananbeh KM, Al-Sayaydeh R. Isolation and Characterization of Halotolerant Plant Growth Promoting Rhizobacteria From Durum Wheat ( Triticum turgidum subsp. durum) Cultivated in Saline Areas of the Dead Sea Region. Front Microbiol 2019; 10:1639. [PMID: 31396175 PMCID: PMC6664018 DOI: 10.3389/fmicb.2019.01639] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2018] [Accepted: 07/02/2019] [Indexed: 01/24/2023] Open
Abstract
Plant growth promoting rhizobacteria (PGPR) are beneficial microorganisms that can be utilized to improve plant responses against biotic and abiotic stresses. In this study, 74 halotolerant bacterial isolates were isolated from rhizosphere and endorhizosphere of durum wheat (Triticum turgidum subsp. durum) plants cultivated in saline environments in the Ghor region near the east of the Dead Sea. 16S rDNA partial sequences and phylogenetic analysis of 62 isolates showed clear clustering of the isolates into three phyla: Firmicutes (61.3%), Proteobacteria (29.0%), and Actinobacteria (9.7%). At the genus level, the majority of them were grouped within the Bacillus, Oceanobacillus, and Halomonas genera. The isolates, which possessed plant growth promoting traits including nitrogen fixation, ACC deaminase activity, auxin production, inorganic phosphate solubilization and siderophore production, were selected. The effect of the inoculation of selected PGPR strains on growth of salt sensitive and salt tolerant durum wheat genotypes under high salt stress conditions was evaluated. Six halotolerant PGPR strains were able to improve survival in inoculated plants under high salinity stress conditions as reflected in higher germination percentages and seedling root growth when compared with non-inoculated plants. Furthermore, three halotolerant PGPR strains were able to improve durum wheat tolerance to water deficit stress. In addition, antagonistic effect in four halotolerant PGPR strains against an aggressive pathogenic isolate of Fusarium culmorum that causes crown rot disease was observed in a dual culture assay. In conclusion, the halotolerant PGPR strains described in this study might have great potential to improve durum wheat productivity under different stress conditions.
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Affiliation(s)
- Randa N Albdaiwi
- Department of Biological Sciences, Faculty of Science, The University of Jordan, Amman, Jordan
| | - Hala Khyami-Horani
- Department of Biological Sciences, Faculty of Science, The University of Jordan, Amman, Jordan
| | - Jamal Y Ayad
- Department of Horticulture and Crop Science, Faculty of Agriculture, The University of Jordan, Amman, Jordan
| | - Kholoud M Alananbeh
- Department of Plant Protection, Faculty of Agriculture, The University of Jordan, Amman, Jordan
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249
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Pan L, Yu X, Shao J, Liu Z, Gao T, Zheng Y, Zeng C, Liang C, Chen C. Transcriptomic profiling and analysis of differentially expressed genes in asparagus bean (Vigna unguiculata ssp. sesquipedalis) under salt stress. PLoS One 2019; 14:e0219799. [PMID: 31299052 PMCID: PMC6625716 DOI: 10.1371/journal.pone.0219799] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Accepted: 07/01/2019] [Indexed: 01/17/2023] Open
Abstract
Asparagus bean (Vigna unguiculata ssp. sesquipedalis) is a warm season legume which is widely distributed over subtropical regions and semiarid areas. It is mainly grown as a significant protein source in developing countries. Salinity, as one of the main abiotic stress factors, constrains the normal growth and yield of asparagus bean. This study used two cultivars (a salt-sensitive genotype and a salt-tolerant genotype) under salt stress vs. control to identify salt-stress-induced genes in asparagus bean using RNA sequencing. A total of 692,086,838 high-quality clean reads, assigned to 121,138 unigenes, were obtained from control and salt-treated libraries. Then, 216 root-derived DEGs (differentially expressed genes) and 127 leaf-derived DEGs were identified under salt stress between the two cultivars. Of these DEGs, thirteen were assigned to six transcription factors (TFs), including AP2/EREBP, CCHC(Zn), C2H2, WRKY, WD40-like and LIM. GO analysis indicated four DEGs might take effects on the "oxidation reduction", "transport" and "signal transduction" process. Moreover, expression of nine randomly-chosen DEGs was verified by quantitative real-time-PCR (qRT-PCR) analysis. Predicted function of the nine tested DEGs was mainly involved in the KEGG pathway of cation transport, response to osmotic stress, and phosphorelay signal transduction system. A salt-stress-related pathway of "SNARE interactions in vesicular transport" was concerned. As byproducts, 15, 321 microsatellite markers were found in all the unigenes, and 17 SNP linked to six salt-stress induced DEGs were revealed. These candidate genes provide novel insights for understanding the salt tolerance mechanism of asparagus bean in the future.
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Affiliation(s)
- Lei Pan
- Hubei Province Engineering Research Center of Legume Plants, School of Life Sciences, Jianghan University, Wuhan, China
- Computational Biology Institute and Center for Biomolecular Sciences, Department of Physics, The George Washington University, Washington, DC, United States of America
| | - Xiaolu Yu
- Hubei Province Engineering Research Center of Legume Plants, School of Life Sciences, Jianghan University, Wuhan, China
| | - Jingjie Shao
- Hubei Province Engineering Research Center of Legume Plants, School of Life Sciences, Jianghan University, Wuhan, China
| | - Zhichao Liu
- Computational Biology Institute and Center for Biomolecular Sciences, Department of Physics, The George Washington University, Washington, DC, United States of America
| | - Tong Gao
- Hubei Province Engineering Research Center of Legume Plants, School of Life Sciences, Jianghan University, Wuhan, China
| | - Yu Zheng
- Institute for Interdisciplinary Research, Jianghan University, Wuhan, China
| | - Chen Zeng
- Computational Biology Institute and Center for Biomolecular Sciences, Department of Physics, The George Washington University, Washington, DC, United States of America
| | - Chengzhi Liang
- Institute of Genetics and Development, Chinese Academy of Sciences, Beijing, China
| | - Chanyou Chen
- Hubei Province Engineering Research Center of Legume Plants, School of Life Sciences, Jianghan University, Wuhan, China
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250
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Alshareef NO, Wang JY, Ali S, Al-Babili S, Tester M, Schmöckel SM. Overexpression of the NAC transcription factor JUNGBRUNNEN1 (JUB1) increases salinity tolerance in tomato. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 140:113-121. [PMID: 31100704 DOI: 10.1016/j.plaphy.2019.04.038] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Revised: 04/19/2019] [Accepted: 04/30/2019] [Indexed: 05/10/2023]
Abstract
Soil salinity is a major abiotic stress affecting plant growth and yield, due to both osmotic and ionic stresses. JUBGBRUNNEN1 (JUB1) is a NAC family transcription factor that has been shown to be involved in responses to abiotic stresses, such as water deficit, osmotic, salinity, heat and oxidative stress. In Arabidopsis thaliana (Arabidopsis), JUB1 has been shown to improve plant stress tolerance by regulating H2O2 levels. In the horticultural crop, Solanum lycopersicum cv. Moneymaker (tomato), overexpression of AtJUB1 has been shown to partially alleviate water deficit stress at the vegetative stage. In this study, we investigated the effect of Arabidopsis JUB1 overexpression in salinity tolerance in tomato. In hydroponically grown tomato seedlings, AtJUB1 overexpression results in higher prolines levels and improves the maintenance of water content in the plant under salinity stress. The transgenic tomato plants are more tolerant to salinity stress compared to control lines based on plant biomass. However, at the reproductive stage, we found that overexpression of AtJUB1 only provided marginal improvements in yield-related parameters, in the conditions used for the current work. The combination of improved water deficit and salinity stress tolerance conferred by AtJUB1 overexpression may be beneficial when tomato plants are grown in the field under marginal environments.
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Affiliation(s)
- Nouf Owdah Alshareef
- King Abdullah University of Science and Technology (KAUST), Division of Biological and Environmental Sciences and Engineering (BESE), Thuwal, Saudi Arabia
| | - Jian You Wang
- King Abdullah University of Science and Technology (KAUST), Division of Biological and Environmental Sciences and Engineering (BESE), Thuwal, Saudi Arabia
| | - Shawkat Ali
- King Abdullah University of Science and Technology (KAUST), Division of Biological and Environmental Sciences and Engineering (BESE), Thuwal, Saudi Arabia; Agriculture and Agri-Food Canada, Kentville Research and Development Centre, 32 Main Street, Kentville, Nova Scotia, B4N 1J5, Canada
| | - Salim Al-Babili
- King Abdullah University of Science and Technology (KAUST), Division of Biological and Environmental Sciences and Engineering (BESE), Thuwal, Saudi Arabia
| | - Mark Tester
- King Abdullah University of Science and Technology (KAUST), Division of Biological and Environmental Sciences and Engineering (BESE), Thuwal, Saudi Arabia
| | - Sandra M Schmöckel
- King Abdullah University of Science and Technology (KAUST), Division of Biological and Environmental Sciences and Engineering (BESE), Thuwal, Saudi Arabia; Department of Crop Science, Faculty of Agriculture, University of Hohenheim, Stuttgart, Germany.
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