1
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Melcrová A, Klein C, Roos WH. Membrane-Active Antibiotics Affect Domains in Bacterial Membranes as the First Step of Their Activity. NANO LETTERS 2024; 24:11800-11807. [PMID: 39145544 PMCID: PMC11440642 DOI: 10.1021/acs.nanolett.4c01873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2024] [Revised: 08/07/2024] [Accepted: 08/07/2024] [Indexed: 08/16/2024]
Abstract
The need to combat antimicrobial resistance is becoming more and more pressing. Here we investigate the working mechanism of a small cationic agent, N-alkylamide 3d, by conventional and high-speed atomic force microscopy. We show that N-alkylamide 3d interacts with the membrane of Staphylococcus aureus, where it changes the organization and dynamics of lipid domains. After this initial step, supramolecular structures of the antimicrobial agent attach on top of the affected membrane gradually, covering it entirely. These results demonstrate that lateral domains in the bacterial membranes might be affected by small antimicrobial agents more often than anticipated. At the same time, we show a new dual-step activity of N-alkylamide 3d that not only destroys the lateral membrane organization but also effectively covers the whole membrane with aggregates. This final step could render the membrane inaccessible from the outside and possibly prevent signaling and waste disposal of living bacteria.
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Affiliation(s)
- Adéla Melcrová
- Molecular
Biophysics, Zernike Institute for Advanced Materials, Rijksuniversiteit Groningen, 9712 AG Groningen, The Netherlands
| | - Christiaan Klein
- Molecular
Biophysics, Zernike Institute for Advanced Materials, Rijksuniversiteit Groningen, 9712 AG Groningen, The Netherlands
| | - Wouter H. Roos
- Molecular
Biophysics, Zernike Institute for Advanced Materials, Rijksuniversiteit Groningen, 9712 AG Groningen, The Netherlands
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2
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Gao F, Guo J, Liu S, Zhang F, Zhang Y, Wang L. Empowering hydrophobic anticancer drugs by ultrashort peptides: General Co-assembly strategy for improved solubility, targeted efficacy, and clinical application. J Colloid Interface Sci 2024; 667:119-127. [PMID: 38631250 DOI: 10.1016/j.jcis.2024.04.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 04/01/2024] [Accepted: 04/02/2024] [Indexed: 04/19/2024]
Abstract
The current state of drug delivery systems allows for the resolution of specific issues like inadequate solubility, limited targeting capabilities, and complex preparation processes, requiring tailored designs for different drugs. Yet, the major challenge in clinical application lies in surmounting these obstacles with a universal carrier that is effective for a variety of anticancer drugs. Herein, with the help of computer simulation, we rationally design ultrashort peptides GY and CCYRGD, which can co-assemble with hydrophobic anticancer drugs into nanoparticles with enhanced solubility, targeting ability and anticancer efficacy. Taking 7-ethyl-10-hydroxy camptothecin (SN38) as a model anticancer drug, the co-assembled SN38-GY-CCYRGD nanoparticles significantly enhance the water solubility of SN38 by more than three orders of magnitude. The as-prepared nanoparticles can effectively kill cancer cells, e.g., human small cell lung cancer (A549) cells with a notable cell mortality rate of 71%. Mice experimental results demonstrate the nanoparticles' efficient targeting capability, marked reducing the toxicity to normal tissues while improving antitumor efficacy. This work presents a novel drug delivery method, integrating effective, targeted, and safe strategies into a comprehensive carrier system, designed for the administration of hydrophobic anticancer drugs.
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Affiliation(s)
- Feng Gao
- Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China; Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China
| | - Jun Guo
- Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China
| | - Shihao Liu
- Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China
| | - Feng Zhang
- Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China; Key Laboratory of Optical Technology and Instrument for Medicine, Ministry of Education, University of Shanghai for Science and Technology, Shanghai 200093, China.
| | - Yi Zhang
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China.
| | - Liping Wang
- Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China.
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3
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Chen C, Yurtsever A, Li P, Sun L. Two-Dimensional Layered Nanomaterials Steering Self-Assembly of Dodecapeptides with Three Building Blocks. ACS APPLIED MATERIALS & INTERFACES 2024; 16:19699-19710. [PMID: 38588069 DOI: 10.1021/acsami.3c18851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/10/2024]
Abstract
Self-assembly of peptides on layered nanomaterials such as graphite and MoS2 in the formation of long-range ordered two-dimensional nanocrystal patterns leading to its potential applications for biosensing and bioelectronics has attracted significant interest in nanoscience and nanotechnology. However, controlling the self-assembly of peptides on nanomaterials is still challenging due to the unclear role of nanomaterials in steering self-assembly. Here, we used the in-situ AFM technique to capture different changes of peptide coverage as well as lengthening and widening rates depending on peptide concentrations, show the distinct boundary dynamics of two stabilized peptide domains, and resolve the molecular resolution structural differences and specific orientation of peptide on both nanomaterials. Moreover, ex-situ results showed that the nanomaterial layers tuned the opposite changes of nanowire heights and densities and displayed the different water-resistance stabilities on both nanomaterials. This work provides a basis for understanding nanomaterials steering peptide self-assembly and using hybrid bionanomaterials as a scaffold, enabling for potential biosensing and bioelectronics applications.
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Affiliation(s)
- Chen Chen
- Earth-Life Science Institute, Tokyo Institute of Technology, Meguro-ku, Tokyo 152-8550, Japan
| | - Ayhan Yurtsever
- WPI Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
| | - Peiying Li
- RIKEN Center for Biosystems Dynamics Research, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan
| | - Linhao Sun
- WPI Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
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4
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Du Q, Li N, Lian J, Guo J, Zhang Y, Zhang F. Dimensional effect of graphene nanostructures on cytoskeleton-coupled anti-tumor metastasis. SMART MEDICINE 2023; 2:e20230014. [PMID: 39188348 PMCID: PMC11235939 DOI: 10.1002/smmd.20230014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 07/12/2023] [Indexed: 08/28/2024]
Abstract
Interactions between inorganic materials and living systems can be strongly influenced by the dimensional property of the materials, which can in turn impact biological activities. Although the role of biomaterials at the molecular and cellular scales has been studied, research investigating the effects of biomaterials across multiple dimensional scales is relatively scarce. Herein, comparing the effectiveness of two-dimensional graphene oxide nanosheets (GOs) and three-dimensional graphene oxide quantum dots (GOQDs) (though not zero-dimensional because of their significant surface area) in cancer therapies, we have discovered that GOs, with the same mass concentration, exhibit stronger anti-cancer and anti-tumor metastasis properties than GOQDs. Our research, which employed liquid-phase atomic force microscopy, revealed that lower-dimensional GOs create a more extensive nano-bio interface that impedes actin protein polymerization into the cytoskeleton, leading to the prevention of tumor metastasis. These results help to better understand the underlying mechanisms and offer a dimensional perspective on the potential of optimizing the properties of graphene-based materials for clinical applications, e.g., cancer therapy.
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Affiliation(s)
- Qiqige Du
- Wenzhou InstituteUniversity of Chinese Academy of SciencesWenzhouChina
| | - Na Li
- Key Laboratory of Optical Technology and Instrument for MedicineMinistry of EducationUniversity of Shanghai for Science and TechnologyShanghaiChina
| | - Jiaqi Lian
- Key Laboratory of Optical Technology and Instrument for MedicineMinistry of EducationUniversity of Shanghai for Science and TechnologyShanghaiChina
| | - Jun Guo
- Wenzhou InstituteUniversity of Chinese Academy of SciencesWenzhouChina
| | - Yi Zhang
- Shanghai Advanced Research InstituteChinese Academy of SciencesShanghaiChina
| | - Feng Zhang
- Wenzhou InstituteUniversity of Chinese Academy of SciencesWenzhouChina
- Key Laboratory of Optical Technology and Instrument for MedicineMinistry of EducationUniversity of Shanghai for Science and TechnologyShanghaiChina
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5
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Luo W, Homma C, Hayamizu Y. Rational Design and Self-Assembly of Histidine-Rich Peptides on a Graphite Surface. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:7057-7062. [PMID: 37171391 DOI: 10.1021/acs.langmuir.3c00270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Histidine-rich peptides (HRPs) have been investigated to create functional biomolecules based on the nature of histidine, such as ion binding and catalytic activity. The organization of these HRPs on a solid surface can lead to surface functionalization with the well-known properties of HRPs. However, immobilization of HRPs on the surface has not been realized. Here, we design a series of octapeptides with histidine repeat units, aiming to establish their self-assembly on a graphite surface to produce a highly robust and active nanoscaffold. The new design has (XH)4, and we incorporated various types of hydrophobic amino acids at X in the sequence to facilitate their interaction with the surface. The effect of the pair of amino acids on their self-assembly was investigated by atomic force microscopy. Contact angle measurement revealed that these assemblies functionalized graphite surfaces with different wetting chemistry. Moreover, the secondary structure of peptides was characterized by Fourier transform infrared spectroscopy (FTIR), which gives us further insights into the conformation of histidine repeat peptides on the surface. Our results showed a new approach to applying histidine-rich peptides on the surface and tuning the self-assembly behavior by introducing different counter amino acids that could be integrated with a wide range of biosensing and biotechnology applications.
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Affiliation(s)
- Wei Luo
- Department of Materials Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguroku, Tokyo 152-8550, Japan
| | - Chishu Homma
- Department of Materials Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguroku, Tokyo 152-8550, Japan
| | - Yuhei Hayamizu
- Department of Materials Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, 2-12-1 Ookayama, Meguroku, Tokyo 152-8550, Japan
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6
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Yurtsever A, Sun L, Hirata K, Fukuma T, Rath S, Zareie H, Watanabe S, Sarikaya M. Molecular Scale Structure and Kinetics of Layer-by-Layer Peptide Self-Organization at Atomically Flat Solid Surfaces. ACS NANO 2023; 17:7311-7325. [PMID: 36857412 DOI: 10.1021/acsnano.2c10673] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Understanding the mechanisms of self-organization of short peptides into two- and three-dimensional architectures are of great interest in the formation of crystalline biomolecular systems and their practical applications. Since the assembly is a dynamic process, the study of structural development is challenging at the submolecular dimensions continuously across an adequate time scale in the natural biological environment, in addition to the complexities stemming from the labile molecular structures of short peptides. Self-organization of solid binding peptides on surfaces offers prospects to overcome these challenges. Here we use a graphite binding dodecapeptide, GrBP5, and record its self-organization process of the first two layers on highly oriented pyrolytic graphite surface in an aqueous solution by using frequency modulation atomic force microscopy in situ. The observations suggest that the first layer forms homogeneously, generating self-organized crystals with a lattice structure in contact with the underlying graphite. The second layer formation is mostly heterogeneous, triggered by the crystalline defects on the first layer, growing row-by-row establishing nominally diverse biomolecular self-organized structures with transient crystalline phases. The assembly is highly dependent on the peptide concentration, with the nucleation being high in high molecular concentrations, e.g., >100 μM, while the domain size is small, with an increase in the growth rate that gradually slows down. Self-assembled peptide crystals are composed of either singlets or doublets establishing P1 and P2 oblique lattices, respectively, each commensurate with the underlying graphite lattice with chiral crystal relations. This work provides insights into the surface behavior of short peptides on solids and offers quantitative guidance toward elucidating molecular mechanisms of self-assembly helping in the scientific understanding and construction of coherent bio/nano hybrid interfaces.
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Affiliation(s)
- Ayhan Yurtsever
- WPI Nano Life Science Institute, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
| | - Linhao Sun
- WPI Nano Life Science Institute, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
| | - Kaito Hirata
- Institute for Frontier Science and Initiative, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
| | - Takeshi Fukuma
- WPI Nano Life Science Institute, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
| | - Siddharth Rath
- GEMSEC, Genetically Engineered Materials Science and Engineering Center, University of Washington, Seattle, Washington 98195, United States
| | - Hadi Zareie
- GEMSEC, Genetically Engineered Materials Science and Engineering Center, University of Washington, Seattle, Washington 98195, United States
| | - Shinji Watanabe
- WPI Nano Life Science Institute, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
| | - Mehmet Sarikaya
- GEMSEC, Genetically Engineered Materials Science and Engineering Center, University of Washington, Seattle, Washington 98195, United States
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7
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Noguchi H, Nakamura Y, Tezuka S, Seki T, Yatsu K, Narimatsu T, Nakata Y, Hayamizu Y. Self-assembled GA-Repeated Peptides as a Biomolecular Scaffold for Biosensing with MoS 2 Electrochemical Transistors. ACS APPLIED MATERIALS & INTERFACES 2023; 15. [PMID: 36892269 PMCID: PMC10037235 DOI: 10.1021/acsami.2c23227] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Accepted: 02/17/2023] [Indexed: 06/16/2023]
Abstract
Biosensors with two-dimensional materials have gained wide interest due to their high sensitivity. Among them, single-layer MoS2 has become a new class of biosensing platform owing to its semiconducting property. Immobilization of bioprobes directly onto the MoS2 surface with chemical bonding or random physisorption has been widely studied. However, these approaches potentially cause a reduction of conductivity and sensitivity of the biosensor. In this work, we designed peptides that spontaneously align into monomolecular-thick nanostructures on electrochemical MoS2 transistors in a non-covalent fashion and act as a biomolecular scaffold for efficient biosensing. These peptides consist of repeated domains of glycine and alanine in the sequence and form self-assembled structures with sixfold symmetry templated by the lattice of MoS2. We investigated electronic interactions of self-assembled peptides with MoS2 by designing their amino acid sequence with charged amino acids at both ends. Charged amino acids in the sequence showed a correlation with the electrical properties of single-layer MoS2, where negatively charged peptides caused a shift of threshold voltage in MoS2 transistors and neutral and positively charged peptides had no significant effect on the threshold voltage. The transconductance of transistors had no decrease due to the self-assembled peptides, indicating that aligned peptides can act as a biomolecular scaffold without degrading the intrinsic electronic properties for biosensing. We also investigated the impact of peptides on the photoluminescence (PL) of single-layer MoS2 and found that the PL intensity changed sensitively depending on the amino acid sequence of peptides. Finally, we demonstrated a femtomolar-level sensitivity of biosensing using biotinylated peptides to detect streptavidin.
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Affiliation(s)
- Hironaga Noguchi
- Department
of Materials Science and Engineering, School of Materials and Chemical
Technology, Tokyo Institute of Technology, Tokyo 152-8550, Japan
| | - Yoshiki Nakamura
- Department
of Materials Science and Engineering, School of Materials and Chemical
Technology, Tokyo Institute of Technology, Tokyo 152-8550, Japan
| | - Sayaka Tezuka
- Department
of Materials Science and Engineering, School of Materials and Chemical
Technology, Tokyo Institute of Technology, Tokyo 152-8550, Japan
| | - Takakazu Seki
- Department
of Frontier Materials Chemistry, Faculty of Science and Technology, Hirosaki University, 3 Bunkyo-cho, Hirosaki, Aomori 036-8561, Japan
| | - Kazuki Yatsu
- Department
of Materials Science and Engineering, School of Materials and Chemical
Technology, Tokyo Institute of Technology, Tokyo 152-8550, Japan
| | - Takuma Narimatsu
- Department
of Materials Science and Engineering, School of Materials and Chemical
Technology, Tokyo Institute of Technology, Tokyo 152-8550, Japan
| | - Yasuaki Nakata
- Department
of Materials Science and Engineering, School of Materials and Chemical
Technology, Tokyo Institute of Technology, Tokyo 152-8550, Japan
| | - Yuhei Hayamizu
- Department
of Materials Science and Engineering, School of Materials and Chemical
Technology, Tokyo Institute of Technology, Tokyo 152-8550, Japan
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8
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Stroyuk O, Raievska O, Brabec CJ, Dzhagan V, Havryliuk Y, Zahn DRT. Self-assembly of colloidal single-layer carbon nitride. NANOSCALE 2022; 14:12347-12357. [PMID: 35971970 DOI: 10.1039/d2nr03477h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
We introduce a new concept of a "bottom-to-top" design of intercalate carbon nitride compounds based on the effects of self-assembly of colloidal single-layer carbon nitride (SLCN) sheets stabilized by tetraethylammonium hydroxide NEt4OH upon ambient drying of the water solvent. These effects include (i) formation of stage-1 intercalates of NEt4OH during the ambient drying of SLCN colloids on glass substrates and (ii) the spontaneous formation of layered hexagonally-shaped networks of SLCN sheets on freshly-cleaved mica surfaces. The dynamics of the intercalate formation was followed by in situ X-ray diffraction allowing different stages to be identified, including the deposition of a primary "wet" intercalate of hydrated NEt4OH and the gradual elimination of excessive water during its ambient drying. The intercalated NEt4+ cations show a specific "flattened" conformation allowing the dynamics of formation and structure of the intercalate to be probed by vibrational spectroscopies. The two-dimensional self-assembly on mica is assumed to be driven both by the internal hexagonal symmetry of heptazine units and by a templating effect of the mica surface.
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Affiliation(s)
- Oleksandr Stroyuk
- Forschungszentrum Jülich GmbH, Helmholtz-Institut Erlangen Nürnberg für Erneuerbare Energien (HI ERN), 91058 Erlangen, Germany.
| | - Oleksandra Raievska
- Forschungszentrum Jülich GmbH, Helmholtz-Institut Erlangen Nürnberg für Erneuerbare Energien (HI ERN), 91058 Erlangen, Germany.
| | - Christoph J Brabec
- Forschungszentrum Jülich GmbH, Helmholtz-Institut Erlangen Nürnberg für Erneuerbare Energien (HI ERN), 91058 Erlangen, Germany.
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Materials for Electronics and Energy Technology (i-MEET), Martensstrasse 7, 91058 Erlangen, Germany
| | - Volodymyr Dzhagan
- V. Lashkaryov Institute of Semiconductors Physics, National Academy of Sciences of Ukraine, 41 Nauky Av., 03028 Kyiv, Ukraine
- Taras Shevchenko National University of Kyiv, 64 Volodymyrs'ka St., 01601 Kyiv, Ukraine
| | - Yevhenii Havryliuk
- Semiconductor Physics, Chemnitz University of Technology, D-09107 Chemnitz, Germany
- Center for Materials, Architectures, and Integration of Nanomembranes (MAIN), Chemnitz University of Technology, D-09107 Chemnitz, Germany
| | - Dietrich R T Zahn
- Semiconductor Physics, Chemnitz University of Technology, D-09107 Chemnitz, Germany
- Center for Materials, Architectures, and Integration of Nanomembranes (MAIN), Chemnitz University of Technology, D-09107 Chemnitz, Germany
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9
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Kikuchi K, Fukuyama T, Uchihashi T, Furuta T, Maeda YT, Ueno T. Protein Needles Designed to Self-Assemble through Needle Tip Engineering. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2022; 18:e2106401. [PMID: 34989115 DOI: 10.1002/smll.202106401] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Revised: 12/01/2021] [Indexed: 06/14/2023]
Abstract
The dynamic process of formation of protein assemblies is essential to form highly ordered structures in biological systems. Advances in structural and synthetic biology have led to the construction of artificial protein assemblies. However, development of design strategies exploiting the anisotropic shape of building blocks of protein assemblies has not yet been achieved. Here, the 2D assembly pattern of protein needles (PNs) is controlled by regulating their tip-to-tip interactions. The PN is an anisotropic needle-shaped protein composed of β-helix, foldon, and His-tag. Three different types of tip-modified PNs are designed by deleting the His-tag and foldon to change the protein-protein interactions. Observing their assembly by high-speed atomic force microscopy (HS-AFM) reveals that PN, His-tag deleted PN, and His-tag and foldon deleted PN form triangular lattices, the monomeric state with nematic order, and fiber assemblies, respectively, on a mica surface. Their assembly dynamics are observed by HS-AFM and analyzed by the theoretical models. Monte Carlo (MC) simulations indicate that the mica-PN interactions and the flexible and multipoint His-tag interactions cooperatively guide the formation of the triangular lattice. This work is expected to provide a new strategy for constructing supramolecular protein architectures by controlling directional interactions of anisotropic shaped proteins.
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Affiliation(s)
- Kosuke Kikuchi
- School of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, 226-8501, Japan
| | - Tatsuya Fukuyama
- Department of Physics, Kyushu University, Motooka 744, Nishi-ku, Fukuoka, 819-0395, Japan
| | - Takayuki Uchihashi
- Exploratory Research Center on Life and Living Systems (ExCELLS), National Institutes of Natural Sciences, Higashiyama 5-1, Myodaiji, Okazaki, 444-0864, Japan
- Department of Physics, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, 464-8602, Japan
| | - Tadaomi Furuta
- School of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, 226-8501, Japan
| | - Yusuke T Maeda
- Department of Physics, Kyushu University, Motooka 744, Nishi-ku, Fukuoka, 819-0395, Japan
| | - Takafumi Ueno
- School of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho 4259, Midori-ku, Yokohama, 226-8501, Japan
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10
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Kong H, Liu B, Yang G, Chen Y, Wei G. Tailoring Peptide Self-Assembly and Formation of 2D Nanoribbons on Mica and HOPG Surface. MATERIALS 2022; 15:ma15010310. [PMID: 35009456 PMCID: PMC8745981 DOI: 10.3390/ma15010310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 12/30/2021] [Accepted: 12/31/2021] [Indexed: 12/10/2022]
Abstract
Studying the interactions between biomolecules and material interfaces play a crucial role in the designing and synthesizing of functional bionanomaterials with tailored structure and function. Previously, a lot of studies were performed on the self-assembly of peptides in solution through internal and external stimulations, which mediated the creation of peptide nanostructures from zero-dimension to three-dimension. In this study, we demonstrate the self-assembly behavior of the GNNQQNY peptide on the surface of mica and highly oriented pyrolytic graphite through tailoring the self-assembly conditions. Various factors, such as the type of dissolvent, peptide concentration, pH value, and evaporation period on the formation of peptide nanofibers and nanoribbons with single- and bi-directional arrays are investigated. It is found that the creation of peptide nanoribbons on both mica and HOPG can be achieved effectively through adjusting and optimizing the experimental parameters. Based on the obtained results, the self-assembly and formation mechanisms of peptide nanoribbons on both material interfaces are discussed. It is expected that the findings obtained in this study will inspire the design of motif-specific peptides with high binding affinity towards materials and mediate the green synthesis of peptide-based bionanomaterials with unique function and application potential.
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Affiliation(s)
| | | | | | | | - Gang Wei
- Correspondence: ; Tel.: +86-150-6624-2101
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11
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Co NT, Li MS. Effect of Surface Roughness on Aggregation of Polypeptide Chains: A Monte Carlo Study. Biomolecules 2021; 11:biom11040596. [PMID: 33919640 PMCID: PMC8072528 DOI: 10.3390/biom11040596] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Revised: 04/14/2021] [Accepted: 04/15/2021] [Indexed: 12/11/2022] Open
Abstract
The self-assembly of amyloidogenic peptides and proteins into fibrillar structures has been intensively studied for several decades, because it seems to be associated with a number of neurodegenerative diseases, such as Alzheimer’s and Parkinson’s disease. Therefore, understanding the molecular mechanisms of this phenomenon is important for identifying an effective therapy for the corresponding diseases. Protein aggregation in living organisms very often takes place on surfaces like membranes and the impact of a surface on this process depends not only on the surface chemistry but also on its topology. Our goal was to develop a simple lattice model for studying the role of surface roughness in the aggregation kinetics of polypeptide chains and the morphology of aggregates. We showed that, consistent with the experiment, an increase in roughness slows down the fibril formation, and this process becomes inhibited at a very highly level of roughness. We predicted a subtle catalytic effect that a slightly rough surface promotes the self-assembly of polypeptide chains but does not delay it. This effect occurs when the interaction between the surface and polypeptide chains is moderate and can be explained by taking into account the competition between energy and entropy factors.
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Affiliation(s)
- Nguyen Truong Co
- Institute of Physics, Polish Academy of Sciences, Al. Lotnikow 32/46, 02-668 Warsaw, Poland;
| | - Mai Suan Li
- Institute of Physics, Polish Academy of Sciences, Al. Lotnikow 32/46, 02-668 Warsaw, Poland;
- Institute for Computational Science and Technology, SBI Building, Quang Trung Software City, Tan Chanh Hiep Ward, District 12, Ho Chi Minh City 700000, Vietnam
- Correspondence:
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12
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Wang Y, Guo Z, Tan T, Ji Y, Hu J, Zhang Y. The effects of nanobubbles on the assembly of glucagon amyloid fibrils. SOFT MATTER 2021; 17:3486-3493. [PMID: 33657201 DOI: 10.1039/d0sm02279a] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Some recent studies have shown that the surface and interface play an important role in the assembly and aggregation of amyloid proteins. However, it is unclear how the gas-liquid interface affects the protein assembly at the nanometer scale although the presence of gas-liquid interfaces is very common in in vitro experiments. Nanobubbles have a large specific surface area, which provides a stage for interactions with various proteins and peptides on the nanometer scale. In this work, nanobubbles produced in solution were employed for studying the effects of the gas-liquid interface on the assembly of glucagon proteins. Atomic force microscopy (AFM) studies showed that nanobubble-treated glucagon solution formed fibrils with an apparent height of 4.02 ± 0.71 nm, in contrast to the fibrils formed with a height of 2.14 ± 0.53 nm in the control. Transmission electron microscopy (TEM) results also showed that nanobubbles promoted the assembly of glucagon to form more fibrils. Thioflavin T (ThT) fluorescence and Fourier transform infrared (FTIR) analyses indicated that the nanobubbles induced the change of the glucagon conformation to a β-sheet structure. A mechanism that explains how nanobubbles affect the assembly of glucagon amyloid fibrils was proposed based on the above-mentioned experimental results. Given the fact that there are a considerable amount of nanobubbles existing in protein solutions, our results indicate that nanobubbles should be considered for fully understanding the protein aggregation events in vitro.
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Affiliation(s)
- Yujiao Wang
- Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China
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13
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Chiang YL, Chang YJ, Chen YR, Hwang IS. Effects of Dissolved Gases on the Amyloid Fibril Morphology. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:516-523. [PMID: 33352048 DOI: 10.1021/acs.langmuir.0c03215] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The onset or progression of numerous neurodegenerative diseases occurs due to aggregation of proteins that ultimately form fibrils. The assembly and morphology of fibrils are susceptible to environmental factors. In this work, we used atomic force microscopy (AFM) to investigate the effects of dissolved nitrogen and oxygen molecules on the morphology of fibrils formed by a hydrophobic amyloid peptide implicated in amyotrophic lateral sclerosis, 15 repeats of glycine-alanine, on a highly oriented pyrolytic graphite substrate. We started with preformed fibril solutions that were then diluted with buffers of different gas conditions, resulting in the aggregation of the fibrils into different morphologies that were revealed by AFM after adsorption on the substrate. Straight fibrils were observed in both degassed and ambient buffers, but a stronger lateral association was seen in degassed buffers. Smaller and softer fibrils were observed in O2-supersaturated buffers, and plaque-like fibril aggregates of considerably large size were evident in N2-supersaturated buffers. In overnight incubation experiments, we observed changes in both the morphology and height of the fibril aggregates, and their evolution varied with different gas conditions. These findings indicate that the gas type and concentration affect the aggregation of amyloid fibrils and may facilitate the development of biomaterial applications and treatments for amyloid-related diseases.
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Affiliation(s)
- Ya-Ling Chiang
- Institute of Physics, Academia Sinica, Nankang, Taipei 115, Taiwan
| | - Yu-Jen Chang
- Genomics Research Center, Academia Sinica, Taipei 115, Taiwan
- Taiwan International Graduate Program in Interdisciplinary Neuroscience, National Taiwan University and Academia Sinica, Taipei, 115, Taiwan
| | - Yun-Ru Chen
- Genomics Research Center, Academia Sinica, Taipei 115, Taiwan
- Taiwan International Graduate Program in Interdisciplinary Neuroscience, National Taiwan University and Academia Sinica, Taipei, 115, Taiwan
| | - Ing-Shouh Hwang
- Institute of Physics, Academia Sinica, Nankang, Taipei 115, Taiwan
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14
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Chen Y, Qiu F, Tang C, Xing Z, Zhao X. Controllable self-patterning behaviours of flexible self-assembling peptide nanofibers. NANOSCALE ADVANCES 2021; 3:1603-1611. [PMID: 36132572 PMCID: PMC9419878 DOI: 10.1039/d0na00892c] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Accepted: 01/22/2021] [Indexed: 02/05/2023]
Abstract
Extremely long flexible self-assembling peptide nanofibers can be manipulated to form various two-dimensional patterns.
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Affiliation(s)
- Yongzhu Chen
- Laboratory of Anaesthesia and Critical Care Medicine
- Translational Neuroscience Centre
- National Clinical Research Center for Geriatrics
- West China Hospital
- Sichuan University
| | - Feng Qiu
- Laboratory of Anaesthesia and Critical Care Medicine
- Translational Neuroscience Centre
- National Clinical Research Center for Geriatrics
- West China Hospital
- Sichuan University
| | - Chengkang Tang
- Institute for Nanobiomedical Technology and Membrane Biology
- West China Hospital
- Sichuan University
- Chengdu
- China
| | - Zhihua Xing
- Institute for Nanobiomedical Technology and Membrane Biology
- West China Hospital
- Sichuan University
- Chengdu
- China
| | - Xiaojun Zhao
- Institute for Nanobiomedical Technology and Membrane Biology
- West China Hospital
- Sichuan University
- Chengdu
- China
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15
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Griffin JD, Song JY, Sestak JO, DeKosky BJ, Berkland CJ. Linking autoantigen properties to mechanisms of immunity. Adv Drug Deliv Rev 2020; 165-166:105-116. [PMID: 32325104 PMCID: PMC7572523 DOI: 10.1016/j.addr.2020.04.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Revised: 04/13/2020] [Accepted: 04/17/2020] [Indexed: 02/06/2023]
Abstract
Antigen-specific immunotherapies (ASIT) present compelling potential for introducing precision to the treatment of autoimmune diseases where nonspecific, global immunosuppression is currently the only treatment option. Central to ASIT design is the delivery of autoantigen, which parallels allergy desensitization approaches. Clinical success in tolerizing allergen-specific responses spans longer than a century, but autoimmune ASITs have yet to see an FDA-approved breakthrough. Allergens and autoantigens differ substantially in physicochemical properties, and these discrepancies influence the nature of their interactions with the immune system. Approved allergen-specific immunotherapies are typically administered as water soluble, neutrally charged protein fractions from 10 to 70 kDa. Conversely, autoantigens are native proteins that exhibit wide-ranging sizes, solubilities, and charges that render them susceptible to immunogenicity. To translate the success of allergen hyposensitization to ASIT, delivery strategies may be necessary to effectively format autoantigens, guide biodistribution, and engage appropriate immune mechanisms.
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Affiliation(s)
- J Daniel Griffin
- Bioengineering Graduate Program, University of Kansas, Lawrence, KS, United States of America; Department of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS, United States of America
| | - Jimmy Y Song
- Department of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS, United States of America; Bioengineering Graduate Program, University of Kansas, Lawrence, KS, United States of America
| | - Joshua O Sestak
- Department of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS, United States of America; Orion BioScience, Inc, Omaha, NE, United States of America
| | - Brandon J DeKosky
- Bioengineering Graduate Program, University of Kansas, Lawrence, KS, United States of America; Department of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS, United States of America; Department of Chemical and Petroleum Engineering, University of Kansas, Lawrence, KS, United States of America
| | - Cory J Berkland
- Bioengineering Graduate Program, University of Kansas, Lawrence, KS, United States of America; Department of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS, United States of America; Department of Chemical and Petroleum Engineering, University of Kansas, Lawrence, KS, United States of America.
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16
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Li Y, Li N, Wang L, Lu Q, Ji X, Zhang F. A Comparative Study on the Self-Assembly of Peptide TGV-9 by In Situ Atomic Force Microscopy. MICROSCOPY AND MICROANALYSIS : THE OFFICIAL JOURNAL OF MICROSCOPY SOCIETY OF AMERICA, MICROBEAM ANALYSIS SOCIETY, MICROSCOPICAL SOCIETY OF CANADA 2020; 26:319-325. [PMID: 32051052 DOI: 10.1017/s1431927620000082] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Previous studies of amyloid diseases reported that the aggregating proteins share a similar conserved peptide sequence which can form the cross-β-sheet-containing nanostructures like nanofilaments. The template-assisted self-assembly (TASA) of peptides on inorganic substrates with different hydrophilicity could be an alternative approach to shed light on the fibrillization mechanism of proteins/peptides in vivo. To figure out the effect of interfaces on amyloid aggregation, we herein employed in situ atomic force microscopy (AFM) to investigate the self-assembling of a Parkinson disease-related core peptide sequence (TGV-9) on a hydrophobic liquid-solid interface via real-time observation of the dynamic fibrillization process. The results show that TGV-9 forms one-dimensional nanostructures on the surface of highly ordered pyrolytic graphite (HOPG) with three preferred growth orientations, which are consistent with the atomic lattice of HOPG, indicating an epitaxial growth or TASA. Conversely, the nanostructures formed in bulk solution can be free-standing nanofilaments, and the fibrillization mechanism is different from that on HOPG. These results could not only deepen the understanding of the protein/peptide aggregation mechanism but also benefit for the early diagnosis and clinic treatment of related diseases.
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Affiliation(s)
- Yaping Li
- School of Life Science and Technology, Inner Mongolia University of Science and Technology, Baotou014010, P. R. China
| | - Na Li
- Terahertz Technology Innovation Research Institute, Shanghai Key Laboratory of Modern Optical System, Terahertz Science Cooperative Innovation Center, University of Shanghai for Science and Technology, 516 Jungong Road, Shanghai200093, P. R. China
- Biomedical Nanocenter, School of Life Science, Inner Mongolia Agricultural University, Hohhot010018, P. R. China
| | - Lei Wang
- School of Life Science and Technology, Inner Mongolia University of Science and Technology, Baotou014010, P. R. China
| | - Qinhua Lu
- School of Life Science and Technology, Inner Mongolia University of Science and Technology, Baotou014010, P. R. China
| | - Xiang Ji
- School of Life Science and Technology, Inner Mongolia University of Science and Technology, Baotou014010, P. R. China
| | - Feng Zhang
- School of Life Science and Technology, Inner Mongolia University of Science and Technology, Baotou014010, P. R. China
- Biomedical Nanocenter, School of Life Science, Inner Mongolia Agricultural University, Hohhot010018, P. R. China
- Key Laboratory of Oral Medicine, Department of Biomedical Engineering, School of Basic Medical Sciences, Guangzhou Institute of Oral Disease, Stomatology Hospital, Guangzhou Medical University, Guangzhou511436, P. R. China
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17
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Evrard Q, Cucinotta G, Houard F, Calvez G, Suffren Y, Daiguebonne C, Guillou O, Caneschi A, Mannini M, Bernot K. Self-assembly of a terbium(III) 1D coordination polymer on mica. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2019; 10:2440-2448. [PMID: 31921522 PMCID: PMC6941415 DOI: 10.3762/bjnano.10.234] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Accepted: 11/22/2019] [Indexed: 06/10/2023]
Abstract
The terbium(III) ion is a particularly suitable candidate for the creation of surface-based magnetic and luminescent devices. In the present work, we report the epitaxial growth of needle-like objects composed of [Tb(hfac)3·2H2O] n (where hfac = hexafluoroacetylacetonate) polymeric units on muscovite mica, which is observed by atomic force microscopy. The needle-like shape mimics the structure observed in the crystalline bulk material. The growth of this molecular organization is assisted by water adsorption on the freshly air-cleaved muscovite mica. This deposition technique allows for the observation of a significant amount of nanochains grown along three preferential directions 60° apart from another. The magnetic properties and the luminescence of the nanochains can be detected without the need of surface-dedicated instrumentation. The intermediate value of the observed luminescence lifetime of the deposits (132 µs) compared to that of the bulk (375 µs) and the CHCl3 solution (13 µs) further reinforces the idea of water-induced growth.
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Affiliation(s)
- Quentin Evrard
- Université de Rennes, INSA Rennes, CNRS, ISCR (Institut des Sciences Chimiques de Rennes), UMR 6226, F-35000 Rennes, France
| | - Giuseppe Cucinotta
- Laboratory for Molecular Magnetism (LA.M.M.), Dipartimento di Chimica "Ugo Schiff", Università degli Studi di Firenze, INSTM Research Unit of Firenze, Via della Lastruccia n. 3-13, Sesto Fiorentino (FI) I-50019, Italy
| | - Felix Houard
- Université de Rennes, INSA Rennes, CNRS, ISCR (Institut des Sciences Chimiques de Rennes), UMR 6226, F-35000 Rennes, France
| | - Guillaume Calvez
- Université de Rennes, INSA Rennes, CNRS, ISCR (Institut des Sciences Chimiques de Rennes), UMR 6226, F-35000 Rennes, France
| | - Yan Suffren
- Université de Rennes, INSA Rennes, CNRS, ISCR (Institut des Sciences Chimiques de Rennes), UMR 6226, F-35000 Rennes, France
| | - Carole Daiguebonne
- Université de Rennes, INSA Rennes, CNRS, ISCR (Institut des Sciences Chimiques de Rennes), UMR 6226, F-35000 Rennes, France
| | - Olivier Guillou
- Université de Rennes, INSA Rennes, CNRS, ISCR (Institut des Sciences Chimiques de Rennes), UMR 6226, F-35000 Rennes, France
| | - Andrea Caneschi
- Dipartimento di Ingegneria Industriale - DIEF, Università degli Studi di Firenze, INSTM Research Unit of Firenze, Via di Santa Marta n. 3, Firenze - 50139, Italy
| | - Matteo Mannini
- Laboratory for Molecular Magnetism (LA.M.M.), Dipartimento di Chimica "Ugo Schiff", Università degli Studi di Firenze, INSTM Research Unit of Firenze, Via della Lastruccia n. 3-13, Sesto Fiorentino (FI) I-50019, Italy
| | - Kevin Bernot
- Université de Rennes, INSA Rennes, CNRS, ISCR (Institut des Sciences Chimiques de Rennes), UMR 6226, F-35000 Rennes, France
- Institut Universitaire de France (IUF), Ministère de l'Enseignement supérieur, de la Recherche et de l'Innovation, 1 rue Descartes, 75231 Paris Cedex 05, France
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18
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Zhang J, Zhou L, Du Q, Shen Z, Hu J, Zhang Y. Assembly of peptides in mica-graphene nanocapillaries controlled by confined water. NANOSCALE 2019; 11:8210-8218. [PMID: 30973561 DOI: 10.1039/c9nr01092k] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Water in nanoscale-confined geometries has unique physicochemical properties in contrast to bulk water, and is believed to play important roles in biological processes although there is less direct information available in the literature. Here, we report the self-assembly behaviors of a neurodegenerative disease related peptide termed GAV-9 encapsulated in mica-graphene nanocapillaries interacting with water nanofilms condensed under ambient conditions, based on atomic force microscopy (AFM) imaging and molecular dynamics (MD) simulations. The results revealed that, upon increase in the humidity, the GAV-9 peptide monomers adsorbed the confined water molecules and transitioned to unexpected hydrogel-like structures. Our MD simulations also suggested that in the confined mica-graphene nanocapillaries, the GAV-9 peptide monomers would indeed form water-rich hydrogel structures instead of highly ordered nanofilaments. The interfacial water confined in the mica-graphene nanocapillary is found to be crucial for such a transition. Moreover, the distribution of confined water layers largely depended on the locations of the preformed peptide nanofilaments, and the peptide nanofilaments further assembled into nanosheets with the water layer increasing, but depolymerized to amorphous peptide assemblies with the water layer decreasing. The polymerization and depolymerization of the peptide nanofilaments could be controlled in a reversible manner. Our results have supplied a simplified model system to uncover the effects of the confined interfacial water on the biological process at the molecular level.
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Affiliation(s)
- Jinjin Zhang
- Shanghai Synchrotron Radiation Facility, Zhangjiang Lab, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China.
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19
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Yang B, Adams DJ, Marlow M, Zelzer M. Surface-Mediated Supramolecular Self-Assembly of Protein, Peptide, and Nucleoside Derivatives: From Surface Design to the Underlying Mechanism and Tailored Functions. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018; 34:15109-15125. [PMID: 30032622 DOI: 10.1021/acs.langmuir.8b01165] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Among the many parameters that have been explored to exercise control over self-assembly processes, the influence of surface properties on self-assembly has been recognized as important but has received considerably less attention than other factors. This is particularly true for biomolecule-derived self-assembling molecules such as protein, peptide, and nucleobase derivatives. Because of their relevance to biomaterial and drug delivery applications, interest in these materials is increasing. As the formation of supramolecular structures from these biomolecule derivatives inevitably brings them into contact with the surfaces of surrounding materials, understanding and controlling the impact of the properties of these surfaces on the self-assembly process are important. In this feature article, we present an overview of the different surface parameters that have been used and studied for the direction of the self-assembly of protein, peptide, and nucleoside-based molecules. The current mechanistic understanding of these processes will be discussed, and potential applications of surface-mediated self-assembly will be outlined.
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Affiliation(s)
- Bin Yang
- Department of Pharmacy , University of Nottingham , Nottingham NG2 7RD , U.K
| | - Dave J Adams
- School of Chemistry , University of Glasgow , Glasgow G12 8QQ , U.K
| | - Maria Marlow
- Department of Pharmacy , University of Nottingham , Nottingham NG2 7RD , U.K
| | - Mischa Zelzer
- Department of Pharmacy , University of Nottingham , Nottingham NG2 7RD , U.K
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20
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Wang Y, Shen Z, Guo Z, Hu J, Zhang Y. Effects of nanobubbles on peptide self-assembly. NANOSCALE 2018; 10:20007-20012. [PMID: 30351325 DOI: 10.1039/c8nr06142d] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
It is believed that the aggregation of amyloid proteins or peptides is promoted by the presence of an air-water interface, and substantial evidence suggests that the characteristics of the air-water interface play critical roles in foam-induced protein aggregation during foam fractionation. However, the effects of the air-water interface on the self-assembly of amyloid-like peptides have not yet been elucidated clearly at the nanometer scale. In this work, air nanobubbles produced in water solution were employed for studying interfacial effects on the self-assembly of a model amyloid peptide termed P11. An atomic force microscopy study showed that the air nanobubbles induced the formation of peptide fibrils with a 9-13 nm helix structure in the P11 solution. Thioflavin T fluorescence and circular dichroism spectroscopic analysis indicated that the nanobubbles induced the change of the peptide conformation to a β-sheet structure. Based on these observations, we have proposed a mechanism to explain how the nanobubbles affect the self-assembly of the P11 peptide at the nanometer scale. Since air nanobubbles are present in water solutions in addition to an air-water interface in normal experiments in vitro, our results indicate that nanobubbles must be taken into account to achieve a complete understanding of protein aggregation events.
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Affiliation(s)
- Yujiao Wang
- Key Laboratory of Interfacial Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China.
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21
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Seki T, So CR, Page TR, Starkebaum D, Hayamizu Y, Sarikaya M. Electrochemical Control of Peptide Self-Organization on Atomically Flat Solid Surfaces: A Case Study with Graphite. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018; 34:1819-1826. [PMID: 28968112 DOI: 10.1021/acs.langmuir.7b02231] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The nanoscale self-organization of biomolecules, such as proteins and peptides, on solid surfaces under controlled conditions is an important issue in establishing functional bio/solid soft interfaces for bioassays, biosensors, and biofuel cells. Electrostatic interaction between proteins and surfaces is one of the most essential parameters in the adsorption and self-assembly of proteins on solid surfaces. Although the adsorption of proteins has been studied with respect to the electrochemical surface potential, the self-assembly of proteins or peptides forming well-organized nanostructures templated by lattice structure of the solid surfaces has not been studied in the relation to the surface potential. In this work, we utilize graphite-binding peptides (GrBPs) selected by the phage display method to investigate the relationship between the electrochemical potential of the highly ordered pyrolytic graphite (HOPG) and peptide self-organization forming long-range-ordered structures. Under modulated electrical bias, graphite-binding peptides form various ordered structures, such as well-ordered nanowires, dendritic structures, wavy wires, amorphous (disordered) structures, and islands. A systematic investigation of the correlation between peptide sequence and self-organizational characteristics reveals that the presence of the bias-sensitive amino acid modules in the peptide sequence has a significant effect on not only surface coverage but also on the morphological features of self-assembled structures. Our results show a new method to control peptide self-assembly by means of applied electrochemical bias as well as peptide design-rules for the construction of functional soft bio/solid interfaces that could be integrated in a wide range of practical implementations.
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Affiliation(s)
- Takakazu Seki
- Department of Materials Science and Engineering, Tokyo Institute of Technology , Tokyo 152-8550, Japan
| | - Christopher R So
- Genetically Engineered Materials Science and Engineering Center, Departments of Materials Science and Engineering and Chemical Engineering, University of Washington , Seattle, Washington 98195, United States
| | - Tamon R Page
- Department of Materials Science and Engineering, Tokyo Institute of Technology , Tokyo 152-8550, Japan
- Genetically Engineered Materials Science and Engineering Center, Departments of Materials Science and Engineering and Chemical Engineering, University of Washington , Seattle, Washington 98195, United States
| | - David Starkebaum
- Genetically Engineered Materials Science and Engineering Center, Departments of Materials Science and Engineering and Chemical Engineering, University of Washington , Seattle, Washington 98195, United States
| | - Yuhei Hayamizu
- Department of Materials Science and Engineering, Tokyo Institute of Technology , Tokyo 152-8550, Japan
- Genetically Engineered Materials Science and Engineering Center, Departments of Materials Science and Engineering and Chemical Engineering, University of Washington , Seattle, Washington 98195, United States
| | - Mehmet Sarikaya
- Genetically Engineered Materials Science and Engineering Center, Departments of Materials Science and Engineering and Chemical Engineering, University of Washington , Seattle, Washington 98195, United States
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22
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Li N, Jang H, Yuan M, Li W, Yun X, Lee J, Du Q, Nussinov R, Hou J, Lal R, Zhang F. Graphite-Templated Amyloid Nanostructures Formed by a Potential Pentapeptide Inhibitor for Alzheimer's Disease: A Combined Study of Real-Time Atomic Force Microscopy and Molecular Dynamics Simulations. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:6647-6656. [PMID: 28605901 PMCID: PMC7900909 DOI: 10.1021/acs.langmuir.7b00414] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Self-assembly of peptides is closely related to many diseases, including Alzheimer's, Parkinson's, and prion diseases. Understanding the basic mechanism of this assembly is essential for designing ultimate cure and preventive measures. Template-assisted self-assembly (TASA) of peptides on inorganic substrates can provide fundamental understanding of substrate-dependent peptides assemble, including the role of hydrophobic interface on the peptide fibrillization. Here, we have studied the self-assembly process of a potential pentapeptide inhibitor on the surface of highly oriented pyrolytic graphite (HOPG) using real time atomic force microscopy (RT-AFM) as well as molecular dynamics (MD) simulation. Experimental and simulation results show nanofilament formation consisting of β-sheet structures and epitaxial growth on HOPG. Height analysis of the nanofilaments and MD simulation indicate that the peptides adopt a lying down configuration of double-layered antiparallel β-sheets for its epitaxial growth, and the number of nanofilament layers is concentration-dependent. These findings provide new perspective for the mechanism of peptide-based fibrillization in amyloid diseases as well as for designing well-ordered micrometrical and nanometrical structures.
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Affiliation(s)
- Na Li
- Agricultural Nanocenter, School of Life Science, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Hohhot 010018, China
| | - Hyunbum Jang
- Cancer and Inflammation Program, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, National Cancer Institute at Frederick, Frederick, Maryland 21702, United States
| | - Ming Yuan
- Agricultural Nanocenter, School of Life Science, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Hohhot 010018, China
| | - Wanrong Li
- Agricultural Nanocenter, School of Life Science, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Hohhot 010018, China
| | - Xiaolin Yun
- Agricultural Nanocenter, School of Life Science, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Hohhot 010018, China
| | - Joon Lee
- Materials Science and Engineering Program and Department of Mechanical and Aerospace Engineering, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States
- Department of Bioengineering, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093 United States
| | - Qiqige Du
- Agricultural Nanocenter, School of Life Science, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Hohhot 010018, China
| | - Ruth Nussinov
- Cancer and Inflammation Program, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, National Cancer Institute at Frederick, Frederick, Maryland 21702, United States
- Department of Human Molecular Genetics and Biochemistry, Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel
| | - Jiahua Hou
- Department of Biomedical Engineering, School of Basic Medical Sciences, Guangzhou Medical University, Guangzhou 511436, China
| | - Ratnesh Lal
- Materials Science and Engineering Program and Department of Mechanical and Aerospace Engineering, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States
- Department of Bioengineering, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093 United States
| | - Feng Zhang
- Agricultural Nanocenter, School of Life Science, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Hohhot 010018, China
- Department of Bioengineering, University of California San Diego, 9500 Gilman Drive, La Jolla, California 92093 United States
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23
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Hajiraissi R, Giner I, Grundmeier G, Keller A. Self-Assembly, Dynamics, and Polymorphism of hIAPP(20-29) Aggregates at Solid-Liquid Interfaces. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:372-381. [PMID: 27935715 DOI: 10.1021/acs.langmuir.6b03288] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The misfolding and subsequent assembly of proteins and peptides into insoluble amyloid structures play important roles in the development of numerous diseases. The dynamics of self-assembly and the morphology of the resulting aggregates critically depend on various environmental factors and especially on the presence of interfaces. Here, we show in detail how the presence of surfaces with different physicochemical properties influences the assembly dynamics and especially the aggregate morphology of hIAPP(20-29), an amyloidogenic fragment of the peptide hormone human islet amyloid polypeptide (hIAPP), which is involved in the development of type 2 diabetes. Time-lapse atomic force microscopy is employed to study the assembly dynamics of hIAPP(20-29) and the morphology of the resulting aggregates in bulk solution as well as at hydrophilic and hydrophobic model surfaces. We find that the presence of hydrophilic mica surfaces promotes fibrillation when compared with the assembly in bulk solution and results in a more pronounced polymorphism. Three fibrillar species are found to coexist on the mica surface, that is, straight, coiled, and ribbon-like fibrils, whereas only the straight and coiled fibrils are observed in bulk solution after comparable incubation times. In addition, the straight and coiled fibrils assembled at the mica surface have significantly different dimensions compared with those assembled in bulk solution. The three fibrillar species found on the mica surface most likely form independently by lateral association of arbitrary numbers of protofibrils with about 2 nm height. On hydrophobic hydrocarbon surfaces, fibrillation is retarded but not completely suppressed, in contrast to previous observations for full-length hIAPP(1-37). Our results show that peptide-surface interactions may induce diverse, peptide-specific alterations of amyloid assembly dynamics and fibrillar polymorphism. They may therefore contribute to a deeper understanding of the molecular processes that govern amyloid aggregation at different surfaces.
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Affiliation(s)
- Roozbeh Hajiraissi
- Technical and Macromolecular Chemistry, Paderborn University , Warburger Strasse 100, 33098 Paderborn, Germany
| | - Ignacio Giner
- Technical and Macromolecular Chemistry, Paderborn University , Warburger Strasse 100, 33098 Paderborn, Germany
| | - Guido Grundmeier
- Technical and Macromolecular Chemistry, Paderborn University , Warburger Strasse 100, 33098 Paderborn, Germany
| | - Adrian Keller
- Technical and Macromolecular Chemistry, Paderborn University , Warburger Strasse 100, 33098 Paderborn, Germany
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24
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Ke S, Chen C, Fu N, Zhou H, Ye M, Lin P, Yuan W, Zeng X, Chen L, Huang H. Transparent Indium Tin Oxide Electrodes on Muscovite Mica for High-Temperature-Processed Flexible Optoelectronic Devices. ACS APPLIED MATERIALS & INTERFACES 2016; 8:28406-28411. [PMID: 27726330 DOI: 10.1021/acsami.6b09166] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Sn-doped In2O3 (ITO) electrodes were deposited on transparent and flexible muscovite mica. The use of mica substrate makes a high-temperature annealing process (up to 500 °C) possible. ITO/mica retains its low electric resistivity even after continuous bending of 1000 times on account of the unique layered structure of mica. When used as a transparent flexible heater, ITO/mica shows an extremely fast ramping (<15 s) up to a high temperature of over 438 °C. When used as a transparent electrode, ITO/mica permits a high-temperature annealing (450 °C) approach to fabricate flexible perovskite solar cells (PSCs) with high efficiency.
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Affiliation(s)
- Shanming Ke
- State Key Laboratory of Solidification Processing, Northwestern Polytechnical University , Xi'an 710072, P. R. China
| | | | - Nianqing Fu
- School of Materials Science and Engineering, South China University of Technology , Guangzhou 510640, PR China
| | | | | | | | | | | | - Lang Chen
- Department of Physics, South University of Science and Technology of China , Shenzhen, 518055, PR China
| | - Haitao Huang
- Department of Applied Physics and Materials Research Center, The Hong Kong Polytechnic University , Hung Hom, Kowloon, Hong Kong, PR China
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25
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Bioelectronic interfaces by spontaneously organized peptides on 2D atomic single layer materials. Sci Rep 2016; 6:33778. [PMID: 27653460 PMCID: PMC5031961 DOI: 10.1038/srep33778] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2015] [Accepted: 09/02/2016] [Indexed: 01/24/2023] Open
Abstract
Self-assembly of biological molecules on solid materials is central to the “bottom-up” approach to directly integrate biology with electronics. Inspired by biology, exquisite biomolecular nanoarchitectures have been formed on solid surfaces. We demonstrate that a combinatorially-selected dodecapeptide and its variants self-assemble into peptide nanowires on two-dimensional nanosheets, single-layer graphene and MoS2. The abrupt boundaries of nanowires create electronic junctions via spatial biomolecular doping of graphene and manifest themselves as a self-assembled electronic network. Furthermore, designed peptides form nanowires on single-layer MoS2 modifying both its electric conductivity and photoluminescence. The biomolecular doping of nanosheets defined by peptide nanostructures may represent the crucial first step in integrating biology with nano-electronics towards realizing fully self-assembled bionanoelectronic devices.
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26
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Sun L, Narimatsu T, Tsuchiya S, Tanaka T, Li P, Hayamizu Y. Water stability of self-assembled peptide nanostructures for sequential formation of two-dimensional interstitial patterns on layered materials. RSC Adv 2016. [DOI: 10.1039/c6ra21244a] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
Sequential-assembly of LEY and GrBP5 peptides on a graphite surface.
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Affiliation(s)
- Linhao Sun
- School of Materials Science and Engineering
- Tokyo Institute of Technology
- Tokyo 152-8550
- Japan
| | - Takuma Narimatsu
- School of Materials Science and Engineering
- Tokyo Institute of Technology
- Tokyo 152-8550
- Japan
| | - Shohei Tsuchiya
- School of Materials Science and Engineering
- Tokyo Institute of Technology
- Tokyo 152-8550
- Japan
| | - Tomohiro Tanaka
- School of Materials Science and Engineering
- Tokyo Institute of Technology
- Tokyo 152-8550
- Japan
| | - Peiying Li
- School of Materials Science and Engineering
- Tokyo Institute of Technology
- Tokyo 152-8550
- Japan
| | - Yuhei Hayamizu
- School of Materials Science and Engineering
- Tokyo Institute of Technology
- Tokyo 152-8550
- Japan
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27
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Shigeno M, Sawato T, Yamaguchi M. Fibril Film Formation of Pseudoenantiomeric Oxymethylenehelicene Oligomers at the Liquid-Solid Interface: Structural Changes, Aggregation, and Discontinuous Heterogeneous Nucleation. Chemistry 2015; 21:17676-82. [DOI: 10.1002/chem.201503224] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2015] [Indexed: 12/21/2022]
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28
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Yu Y, Yang Y, Wang C. Identification of Core Segment of Amyloidal Peptide Mediated by Chaperone Molecules by using Scanning Tunneling Microscopy. Chemphyschem 2015; 16:2995-9. [DOI: 10.1002/cphc.201500340] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2015] [Revised: 06/25/2015] [Indexed: 11/09/2022]
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29
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Rauch V, Kikkawa Y, Koepf M, Hijazi I, Wytko JA, Campidelli S, Goujon A, Kanesato M, Weiss J. Trapping Nanostructures on Surfaces through Weak Interactions. Chemistry 2015; 21:13437-44. [DOI: 10.1002/chem.201501767] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2015] [Indexed: 11/07/2022]
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30
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So CR, Liu J, Fears KP, Leary DH, Golden JP, Wahl KJ. Self-Assembly of Protein Nanofibrils Orchestrates Calcite Step Movement through Selective Nonchiral Interactions. ACS NANO 2015; 9:5782-5791. [PMID: 25970003 DOI: 10.1021/acsnano.5b01870] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The recognition of atomically distinct surface features by adsorbed biomolecules is central to the formation of surface-templated peptide or protein nanostructures. On mineral surfaces such as calcite, biomolecular recognition of, and self-assembly on, distinct atomic kinks and steps could additionally orchestrate changes to the overall shape and symmetry of a bulk crystal. In this work, we show through in situ atomic force microscopy (AFM) experiments that an acidic 20 kDa cement protein from the barnacle Megabalanus rosa (MRCP20) binds specifically to step edge atoms on {101̅4} calcite surfaces, remains bound and further assembles over time to form one-dimensional nanofibrils. Protein nanofibrils are continuous and organized at the nanoscale, exhibiting striations with a period of ca. 45 nm. These fibrils, templated by surface steps of a preferred geometry, in turn selectively dissolve underlying calcite features displaying the same atomic arrangement. To demonstrate this, we expose the protein solution to bare and fibril-associated rhombohedral etch pits to reveal that nanofibrils accelerate only the movement of fibril-forming steps when compared to undecorated steps exposed to the same solution conditions. Calcite mineralized in the presence of MRCP20 results in asymmetric crystals defined by frustrated faces with shared mirror symmetry, suggesting a similar step-selective behavior by MRCP20 in crystal growth. As shown here, selective surface interactions with step edge atoms lead to a cooperative regime of calcite modification, where templated long-range protein nanostructures shape crystals.
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Affiliation(s)
- Christopher R So
- †Chemistry Division, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, United States
| | - Jinny Liu
- ‡Center for Bio/Molecular Science and Engineering, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, United States
| | - Kenan P Fears
- †Chemistry Division, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, United States
| | - Dagmar H Leary
- ‡Center for Bio/Molecular Science and Engineering, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, United States
| | - Joel P Golden
- ‡Center for Bio/Molecular Science and Engineering, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, United States
| | - Kathryn J Wahl
- †Chemistry Division, US Naval Research Laboratory, 4555 Overlook Avenue SW, Washington, DC 20375, United States
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31
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Lee WC, Kim K, Park J, Koo J, Jeong HY, Lee H, Weitz DA, Zettl A, Takeuchi S. Graphene-templated directional growth of an inorganic nanowire. NATURE NANOTECHNOLOGY 2015; 10:423-8. [PMID: 25799519 DOI: 10.1038/nnano.2015.36] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2014] [Accepted: 02/09/2015] [Indexed: 05/19/2023]
Abstract
Assembling inorganic nanomaterials on graphene is of interest in the development of nanodevices and nanocomposite materials, and the ability to align such inorganic nanomaterials on the graphene surface is expected to lead to improved functionalities, as has previously been demonstrated with organic nanomaterials epitaxially aligned on graphitic surfaces. However, because graphene is chemically inert, it is difficult to precisely assemble inorganic nanomaterials on pristine graphene. Previous techniques based on dangling bonds of damaged graphene, intermediate seed materials and vapour-phase deposition at high temperature(,) have only formed randomly oriented or poorly aligned inorganic nanostructures. Here, we show that inorganic nanowires of gold(I) cyanide can grow directly on pristine graphene, aligning themselves with the zigzag lattice directions of the graphene. The nanowires are synthesized through a self-organized growth process in aqueous solution at room temperature, which indicates that the inorganic material spontaneously binds to the pristine graphene surface. First-principles calculations suggest that this assembly originates from lattice matching and π interaction to gold atoms. Using the synthesized nanowires as templates, we also fabricate nanostructures with controlled crystal orientations such as graphene nanoribbons with zigzag-edged directions.
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Affiliation(s)
- Won Chul Lee
- 1] Institute of Industrial Science, The University of Tokyo, Tokyo 153-8505, Japan [2] ERATO Takeuchi Biohybrid Innovation Project, Japan Science and Technology Agency, Tokyo 153-8904, Japan
| | - Kwanpyo Kim
- 1] Department of Physics, University of California at Berkeley, Berkeley, California 94720, USA [2] Department of Physics, Ulsan National Institute of Science and Technology (UNIST), Ulsan 689-798, South Korea
| | - Jungwon Park
- 1] School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA [2] Department of Physics, Harvard University, Cambridge, Massachusetts 02138, USA
| | - Jahyun Koo
- Department of Physics, Konkuk University, Seoul 143-701, South Korea
| | - Hu Young Jeong
- UNIST Central Research Facilities (UCRF), Ulsan National Institute of Science and Technology (UNIST), Ulsan 689-798, South Korea
| | - Hoonkyung Lee
- Department of Physics, Konkuk University, Seoul 143-701, South Korea
| | - David A Weitz
- 1] School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA [2] Department of Physics, Harvard University, Cambridge, Massachusetts 02138, USA
| | - Alex Zettl
- 1] Department of Physics, University of California at Berkeley, Berkeley, California 94720, USA [2] Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Shoji Takeuchi
- 1] Institute of Industrial Science, The University of Tokyo, Tokyo 153-8505, Japan [2] ERATO Takeuchi Biohybrid Innovation Project, Japan Science and Technology Agency, Tokyo 153-8904, Japan
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32
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Zhang F, Zhang P, Hou J, Yun X, Li W, Du Q, Chen Y. Large scale anomalous patterns of muscovite mica discovered by atomic force microscopy. ACS APPLIED MATERIALS & INTERFACES 2015; 7:8699-8705. [PMID: 25839085 DOI: 10.1021/acsami.5b00984] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Muscovite mica is a widely used substrate because of its flatness. The large scale anomalous patterns of muscovite have been discovered by atomic force microscopy (AFM). These patterns distribute around the defects of the muscovite surface. By using different imaging modes and analyzing functions of AFM, these extraordinary patterns are thoroughly characterized, and it was revealed that some selected regularly aligned patterns mimic 2-D orthorhombic crystal systems surrounding the regular structure. However, such patterned nanostructures have no effects on the template-assisted self-assembly (or epitaxial growth) of a disease-related peptide GAV-9.
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Affiliation(s)
- Feng Zhang
- School of Life Science, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Hohhot 010018, China
| | - Ping Zhang
- School of Life Science, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Hohhot 010018, China
| | - Jiahua Hou
- School of Life Science, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Hohhot 010018, China
| | - Xiaoling Yun
- School of Life Science, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Hohhot 010018, China
| | - Wanrong Li
- School of Life Science, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Hohhot 010018, China
| | - Qiqige Du
- School of Life Science, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Hohhot 010018, China
| | - Youjun Chen
- School of Life Science, Inner Mongolia Agricultural University, 306 Zhaowuda Road, Hohhot 010018, China
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33
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Yuan M, Zhong R, Yun X, Hou J, Du Q, Zhao G, Zhang F. A fluorimetric study on the interaction between a Trp-containing beta-strand peptide and amphiphilic polymer-coated gold nanoparticles. LUMINESCENCE 2015; 31:47-53. [DOI: 10.1002/bio.2920] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2015] [Revised: 02/09/2015] [Accepted: 03/14/2015] [Indexed: 12/23/2022]
Affiliation(s)
- Ming Yuan
- School of Life Science; Inner Mongolia Agricultural University; Hohhot China
| | - Ruibo Zhong
- School of Life Science; Inner Mongolia Agricultural University; Hohhot China
| | - Xiaoling Yun
- School of Life Science; Inner Mongolia Agricultural University; Hohhot China
| | - Jiahua Hou
- School of Life Science; Inner Mongolia Agricultural University; Hohhot China
| | - Qiqige Du
- School of Life Science; Inner Mongolia Agricultural University; Hohhot China
| | - Guofen Zhao
- School of Life Science; Inner Mongolia Agricultural University; Hohhot China
| | - Feng Zhang
- School of Life Science; Inner Mongolia Agricultural University; Hohhot China
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34
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Du Q, Dai B, Hou J, Hu J, Zhang F, Zhang Y. A comparative study on the self-assembly of an amyloid-like peptide at water-solid interfaces and in bulk solutions. Microsc Res Tech 2015; 78:375-81. [DOI: 10.1002/jemt.22483] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2014] [Accepted: 02/14/2015] [Indexed: 11/06/2022]
Affiliation(s)
- Qiqige Du
- School of Life Sciences, Inner Mongolia Agricultural University; Hohhot 010018 China
- Key Laboratory of Interfacial Physics and Technology; Shanghai Institute of Applied Physics, Chinese Academy of Sciences; Shanghai 201800 China
| | - Bin Dai
- Key Laboratory of Interfacial Physics and Technology; Shanghai Institute of Applied Physics, Chinese Academy of Sciences; Shanghai 201800 China
| | - Jiahua Hou
- School of Life Sciences, Inner Mongolia Agricultural University; Hohhot 010018 China
| | - Jun Hu
- Key Laboratory of Interfacial Physics and Technology; Shanghai Institute of Applied Physics, Chinese Academy of Sciences; Shanghai 201800 China
| | - Feng Zhang
- School of Life Sciences, Inner Mongolia Agricultural University; Hohhot 010018 China
| | - Yi Zhang
- Key Laboratory of Interfacial Physics and Technology; Shanghai Institute of Applied Physics, Chinese Academy of Sciences; Shanghai 201800 China
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35
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Hwang W, Eryilmaz E. Kinetic signature of fractal-like filament networks formed by orientational linear epitaxy. PHYSICAL REVIEW LETTERS 2014; 113:025502. [PMID: 25062204 DOI: 10.1103/physrevlett.113.025502] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2014] [Indexed: 06/03/2023]
Abstract
We study a broad class of epitaxial assembly of filament networks on lattice surfaces. Over time, a scale-free behavior emerges with a 2.5-3 power-law exponent in filament length distribution. Partitioning between the power-law and exponential behaviors in a network can be used to find the stage and kinetic parameters of the assembly process. To analyze real-world networks, we develop a computer program that measures the network architecture in experimental images. Application to triaxial networks of collagen fibrils shows quantitative agreement with our model. Our unifying approach can be used for characterizing and controlling the network formation that is observed across biological and nonbiological systems.
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Affiliation(s)
- Wonmuk Hwang
- Departments of Biomedical Engineering and Materials Science & Engineering, Texas A&M University, College Station, Texas 77845, USA and School of Computational Sciences, Korea Institute for Advanced Study, Seoul 130-722, Korea
| | - Esma Eryilmaz
- Department of Physics, Texas A&M University, College Station, Texas 77845, USA
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36
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Hernandez Ramirez VA, Pailleret A, Joiret S, d'Orlyé F, Lazerges M, Perrot H, Gutierrez Granados S, Bedioui F, De León-Rodríguez LM. Adsorption and self-assembly of a ferrocene d- and l-nonapeptide disulfide onto gold and mica substrates. NEW J CHEM 2014. [DOI: 10.1039/c4nj00278d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Linear nanostructures resulting form self-association of a nonapeptide (left) yield progressively to ring-shaped nanostructures (right).
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Affiliation(s)
- V. A. Hernandez Ramirez
- Departamento de Química
- Universidad de Guanajuato
- Cerro de la Venada S/N
- Pueblito de Rocha
- Guanajuato, México
| | - A. Pailleret
- Université Pierre et Marie Curie
- LISE
- UPR 15 CNRS
- 75005 Paris, France
| | - S. Joiret
- Université Pierre et Marie Curie
- LISE
- UPR 15 CNRS
- 75005 Paris, France
| | - F. d'Orlyé
- Unité de Technologies Chimique et Biologique pour la Santé
- U 1022 INSERM
- UMR 8258 CNRS
- ENSCP
- ChimieParistech
| | - M. Lazerges
- Unité de Technologies Chimique et Biologique pour la Santé
- U 1022 INSERM
- UMR 8258 CNRS
- ENSCP
- ChimieParistech
| | - H. Perrot
- Université Pierre et Marie Curie
- LISE
- UPR 15 CNRS
- 75005 Paris, France
| | - S. Gutierrez Granados
- Departamento de Química
- Universidad de Guanajuato
- Cerro de la Venada S/N
- Pueblito de Rocha
- Guanajuato, México
| | - F. Bedioui
- Unité de Technologies Chimique et Biologique pour la Santé
- U 1022 INSERM
- UMR 8258 CNRS
- ENSCP
- ChimieParistech
| | - L. M. De León-Rodríguez
- Departamento de Química
- Universidad de Guanajuato
- Cerro de la Venada S/N
- Pueblito de Rocha
- Guanajuato, México
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37
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Zhou X, Zhang Y, Zhang F, Pillai S, Liu J, Li R, Dai B, Li B, Zhang Y. Hierarchical ordering of amyloid fibrils on the mica surface. NANOSCALE 2013; 5:4816-4822. [PMID: 23613010 DOI: 10.1039/c3nr00886j] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
The aggregation of amyloid peptides into ordered fibrils is closely associated with many neurodegenerative diseases. The surfaces of cell membranes and biomolecules are believed to play important roles in modulation of peptide aggregation under physiological conditions. Experimental studies of fibrillogenesis at the molecular level in vivo, however, are inherently challenging, and the molecular mechanisms of how surface affects the structure and ordering of amyloid fibrils still remain elusive. Herein we have investigated the aggregation behavior of insulin peptides within water films adsorbed on the mica surface. AFM measurements revealed that the structure and orientation of fibrils were significantly affected by the mica lattice and the peptide concentration. At low peptide concentration (~0.05 mg mL(-1)), there appeared a single layer of short and well oriented fibrils with a mean height of 1.6 nm. With an increase of concentration to a range of 0.2-2.0 mg mL(-1), a different type of fibrils with a mean height of 3.8 nm was present. Interestingly, when the concentration was above 2.0 mg mL(-1), the thicker fibrils exhibited two-dimensional liquid-crystal-like ordering probably caused by the combination of entropic and electrostatic forces. These results could help us gain better insight into the effects of the substrate on amyloid fibrillation.
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Affiliation(s)
- Xingfei Zhou
- Department of Physics, Ningbo University, Ningbo, 315211, China
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38
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Salts drive controllable multilayered upright assembly of amyloid-like peptides at mica/water interface. Proc Natl Acad Sci U S A 2013; 110:8543-8. [PMID: 23650355 DOI: 10.1073/pnas.1220711110] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Surface-assisted self-assembly of amyloid-like peptides has received considerable interest in both amyloidosis research and nanotechnology in recent years. Despite extensive studies, some controlling factors, such as salts, are still not well understood, even though it is known that some salts can promote peptide self-assemblies through the so-called "salting-out" effect. However, they are usually noncontrollable, disordered, amorphous aggregates. Here, we show via a combined experimental and theoretical approach that a conserved consensus peptide NH2-VGGAVVAGV-CONH2 (GAV-9) (from representative amyloidogenic proteins) can self-assemble into highly ordered, multilayered nanofilaments, with surprising all-upright conformations, under high-salt concentrations. Our atomic force microscopy images also demonstrate that the vertical stacking of multiple layers is highly controllable by tuning the ionic strength, such as from 0 mM (monolayer) to 100 mM (mainly double layer), and to 250 mM MgCl2 (double, triple, quadruple, and quintuple layers). Our atomistic molecular dynamics simulations then reveal that these individual layers have very different internal nanostructures, with parallel β-sheets in the first monolayer but antiparallel β-sheets in the subsequent upper layers due to their different microenvironment. Further studies show that the growth of multilayered, all-upright nanostructures is a common phenomenon for GAV-9 at the mica/water interface, under a variety of salt types and a wide range of salt concentrations.
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39
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Template-directed self-assembly of a designed amphiphilic hexapeptide on mica surface. Colloid Polym Sci 2013. [DOI: 10.1007/s00396-013-2969-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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40
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Kang SG, Huynh T, Xia Z, Zhang Y, Fang H, Wei G, Zhou R. Hydrophobic interaction drives surface-assisted epitaxial assembly of amyloid-like peptides. J Am Chem Soc 2013; 135:3150-7. [PMID: 23360070 DOI: 10.1021/ja310989u] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The molecular mechanism of epitaxial fibril formation has been investigated for GAV-9 (NH(3)(+)-VGGAVVAGV-CONH(2)), an amyloid-like peptide extracted from a consensus sequence of amyloidogenic proteins, which assembles with very different morphologies, "upright" on mica and "flat" on the highly oriented pyrolytic graphite (HOPG). Our all-atom molecular dynamics simulations reveal that the strong electrostatic interaction induces the "upright" conformation on mica, whereas the hydrophobic interaction favors the "flat" conformation on HOPG. We also show that the epitaxial pattern on mica is ensured by the lattice matching between the anisotropic binding sites of the basal substrate and the molecular dimension of GAV-9, accompanied with a long-range order of well-defined β-strands. Furthermore, the binding free energy surfaces indicate that the longitudinal assembly growth is predominantly driven by the hydrophobic interaction along the longer crystallographic unit cell direction of mica. These findings provide a molecular basis for the surface-assisted molecular assembly, which might also be useful for the design of de novo nanodevices.
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Affiliation(s)
- Seung-gu Kang
- Computational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, New York 10598, USA
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41
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Das P, Kapoor D, Halloran KT, Zhou R, Matthews CR. Interplay between drying and stability of a TIM barrel protein: a combined simulation-experimental study. J Am Chem Soc 2013; 135:1882-90. [PMID: 23293932 PMCID: PMC3637939 DOI: 10.1021/ja310544t] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Recent molecular dynamics simulations have suggested important roles for nanoscale dewetting in the stability, function, and folding dynamics of proteins. Using a synergistic simulation-experimental approach on the αTS TIM barrel protein, we validated this hypothesis by revealing the occurrence of drying inside hydrophobic amino acid clusters and its manifestation in experimental measures of protein stability and structure. Cavities created within three clusters of branched aliphatic amino acids [isoleucine, leucine, and valine (ILV) clusters] were found to experience strong water density fluctuations or intermittent dewetting transitions in simulations. Individually substituting 10 residues in the large ILV cluster at the N-terminus with less hydrophobic alanines showed a weakening or diminishing effect on dewetting that depended on the site of the mutation. Our simulations also demonstrated that replacement of buried leucines with isosteric, polar asparagines enhanced the wetting of the N- and C-terminal clusters. The experimental results on the stability, secondary structure, and compactness of the native and intermediate states for the asparagine variants are consistent with the preferential drying of the large N-terminal cluster in the intermediate. By contrast, the region encompassing the small C-terminal cluster experiences only partial drying in the intermediate, and its structure and stability are unaffected by the asparagine substitution. Surprisingly, the structural distortions required to accommodate the replacement of leucine by asparagine in the N-terminal cluster revealed the existence of alternative stable folds in the native basin. This combined simulation-experimental study demonstrates the critical role of drying within hydrophobic ILV clusters in the folding and stability of the αTS TIM barrel.
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Affiliation(s)
- Payel Das
- Computational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, NY 10598
| | - Divya Kapoor
- Department of Biochemistry & Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605
| | - Kevin T. Halloran
- Department of Biochemistry & Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605
| | - Ruhong Zhou
- Computational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, NY 10598
- Department of Chemistry, Columbia University, New York, NY 10027
| | - C. Robert Matthews
- Department of Biochemistry & Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605
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42
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Kang SG, Li H, Huynh T, Zhang F, Xia Z, Zhang Y, Zhou R. Molecular mechanism of surface-assisted epitaxial self-assembly of amyloid-like peptides. ACS NANO 2012; 6:9276-9282. [PMID: 23002915 DOI: 10.1021/nn303740j] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
A surprising "upright" fibrilar conformation (with a height of ~2.6 nm) was observed with in situ atomic force microscopy (AFM) for an amyloid-like peptide (NH(2)-VGGAVVAV-COHN(2)) on mica surface, which is very different from its "flat" conformation (with a much smaller height of ~0.9 nm) on the HOPG surface. Our all-atom molecular dynamics (MD) simulations reveal that it is the strong electrostatic interactions between the N-terminus of the peptide and the mica surface that result in an upright conformation and a highly ordered β-stranded structure on mica, with a height of 2.5 ± 0.1 nm, consistent with the AFM experiment. Similarly, our MD simulations show that the same peptides adopt a flat conformation on HOPG surfaces due to the favorable hydrophobic interactions with HOPG. Our simulations also indicate that epitaxial patterns found in mica are preferentially controlled by anisotropic binding sites commensurate with the inherent crystallographic unit cell of the basal substrate.
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Affiliation(s)
- Seung-gu Kang
- Computational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, New York 10598, USA
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So CR, Hayamizu Y, Yazici H, Gresswell C, Khatayevich D, Tamerler C, Sarikaya M. Controlling self-assembly of engineered peptides on graphite by rational mutation. ACS NANO 2012; 6:1648-56. [PMID: 22233341 PMCID: PMC3304023 DOI: 10.1021/nn204631x] [Citation(s) in RCA: 89] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Self-assembly of proteins on surfaces is utilized in many fields to integrate intricate biological structures and diverse functions with engineered materials. Controlling proteins at bio-solid interfaces relies on establishing key correlations between their primary sequences and resulting spatial organizations on substrates. Protein self-assembly, however, remains an engineering challenge. As a novel approach, we demonstrate here that short dodecapeptides selected by phage display are capable of self-assembly on graphite and form long-range-ordered biomolecular nanostructures. Using atomic force microscopy and contact angle studies, we identify three amino acid domains along the primary sequence that steer peptide ordering and lead to nanostructures with uniformly displayed residues. The peptides are further engineered via simple mutations to control fundamental interfacial processes, including initial binding, surface aggregation and growth kinetics, and intermolecular interactions. Tailoring short peptides via their primary sequence offers versatile control over molecular self-assembly, resulting in well-defined surface properties essential in building engineered, chemically rich, bio-solid interfaces.
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Affiliation(s)
- Christopher R. So
- Genetically Engineered Materials Science and Engineering Center, Department of Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA
| | - Yuhei Hayamizu
- Genetically Engineered Materials Science and Engineering Center, Department of Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA
- PRESTO, Japan Science and Technology Agency (JST), 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan
| | - Hilal Yazici
- Genetically Engineered Materials Science and Engineering Center, Department of Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA
| | - Carolyn Gresswell
- Genetically Engineered Materials Science and Engineering Center, Department of Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA
| | - Dmitriy Khatayevich
- Genetically Engineered Materials Science and Engineering Center, Department of Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA
| | - Candan Tamerler
- Genetically Engineered Materials Science and Engineering Center, Department of Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA
| | - Mehmet Sarikaya
- Genetically Engineered Materials Science and Engineering Center, Department of Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA
- Corresponding Author Footnote: Mehmet Sarikaya, Genetically Engineered Materials Science and Engineering Center, Materials Science and Engineering, Roberts Hall, Box: 352120, University of Washington, Seattle, WA 98195, USA, ph: (206) 543-0724, fx: (206) 543-6381,
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Xie M, Li H, Ye M, Zhang Y, Hu J. Peptide Self-Assembly on Mica under Ethanol-Containing Atmospheres: Effects of Ethanol on Epitaxial Growth of Peptide Nanofilaments. J Phys Chem B 2012; 116:2927-33. [DOI: 10.1021/jp2089438] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Muyun Xie
- Shanghai Institute of Applied
Physics, Chinese Academy of Sciences
- Graduate School of the Chinese Academy of Sciences
| | - Hai Li
- Shanghai Institute of Applied
Physics, Chinese Academy of Sciences
| | - Ming Ye
- Shanghai Institute of Applied
Physics, Chinese Academy of Sciences
| | - Yi Zhang
- Shanghai Institute of Applied
Physics, Chinese Academy of Sciences
| | - Jun Hu
- Shanghai Institute of Applied
Physics, Chinese Academy of Sciences
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45
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Zhou X, Liu J, Li B, Pillai S, Lin D, Liu J, Zhang Y. Assembly of glucagon (proto)fibrils by longitudinal addition of oligomers. NANOSCALE 2011; 3:3049-3051. [PMID: 21727967 DOI: 10.1039/c1nr10332f] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The process of glucagon peptide aggregation was studied with high resolution atomic force microscopy (AFM). The statistical analysis of ex situ AFM images in combination with in situ AFM observation suggests that it is more likely that (proto)fibrils are formed via direct longitudinal growth of oligomers, instead of the lateral association of two or more filaments.
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Affiliation(s)
- Xingfei Zhou
- Physical Department, Ningbo University, Ningbo Zhejiang, China.
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Zhang J, Hao R, Huang L, Yao J, Chen X, Shao Z. Self-assembly of a peptide amphiphile based on hydrolysed Bombyx mori silk fibroin. Chem Commun (Camb) 2011; 47:10296-8. [DOI: 10.1039/c1cc12633d] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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47
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Xie Y, Akada M, Hill JP, Ji Q, Charvet R, Ariga K. Real time self-assembly and reassembly of molecular nanowires of trigeminal amphiphile porphyrins. Chem Commun (Camb) 2011; 47:2285-7. [DOI: 10.1039/c0cc04855k] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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48
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Ye M, Zhang Y, Li H, Xie M, Hu J. Supramolecular Structures of Amyloid-Related Peptides in an Ambient Water Nanofilm. J Phys Chem B 2010; 114:15759-65. [PMID: 21077660 DOI: 10.1021/jp105501x] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ming Ye
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China and Graduate School of the Chinese Academy of Sciences, Beijing 100049, China
| | - Yi Zhang
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China and Graduate School of the Chinese Academy of Sciences, Beijing 100049, China
| | - Hai Li
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China and Graduate School of the Chinese Academy of Sciences, Beijing 100049, China
| | - Muyun Xie
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China and Graduate School of the Chinese Academy of Sciences, Beijing 100049, China
| | - Jun Hu
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China and Graduate School of the Chinese Academy of Sciences, Beijing 100049, China
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Zhang FC, Zhang F, Su HN, Li H, Zhang Y, Hu J. Mechanical manipulation assisted self-assembly to achieve defect repair and guided epitaxial growth of individual peptide nanofilaments. ACS NANO 2010; 4:5791-5796. [PMID: 20839881 DOI: 10.1021/nn101541m] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
We have succeeded in the production of defect-free and spatially organized individual one-dimensional peptide nanofilaments by real-time control of the self-assembly process on a solid substrate. Using a unique mechanical manipulation method based on atomic force microscopy, we are able to introduce mechanical stimuli to generate active ends at designated positions on an existing peptide nanofilament previously formed. By doing so, defects in the filament were removed, and self-repairing occurred when the active ends extended along the direction of the supporting lattice, resulting in the closure of the broken filament. Furthermore, new active ends of the nanofilaments can be specifically generated to guide the self-assembly of new filaments at designated positions with selected orientations. The mechanism of defect repair and guided epitaxial growth is also discussed.
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Affiliation(s)
- Fu-Chun Zhang
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China
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50
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Zhang Y, Hu X, Sun J, Shen Y, Hu J, Xu X, Shao Z. High-resolution imaging and nano-manipulation of biological structures on surface. Microsc Res Tech 2010; 74:614-26. [DOI: 10.1002/jemt.20925] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2010] [Accepted: 07/21/2010] [Indexed: 11/11/2022]
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