1
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Alfonso I. Supramolecular chemical biology: designed receptors and dynamic chemical systems. Chem Commun (Camb) 2024; 60:9692-9703. [PMID: 39129537 DOI: 10.1039/d4cc03163f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/13/2024]
Abstract
Supramolecular chemistry focuses on the study of species joined by non-covalent interactions, and therefore on dynamic and relatively ill-defined structures. Despite being a well-developed field, it has to face important challenges when dealing with the selective recognition of biomolecules in highly competitive biomimetic media. However, supramolecular interactions reside at the core of chemical biology systems, since many processes in nature are governed by weak, non-covalent, strongly dynamic contacts. Therefore, there is a natural connection between these two research fields, which are not frequently related or share interests. In this feature article, I will highlight our most recent results in the molecular recognition of biologically relevant species, following different conceptual approaches from the most conventional design of elaborated receptors to the less popular dynamic combinatorial chemistry methodology. Selected illustrative examples from other groups will be also included. The discussion has been focused mainly on systems with potential biomedical applications.
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Affiliation(s)
- Ignacio Alfonso
- Department of Biological Chemistry, Institute for Advanced Chemistry of Catalonia (IQAC), The Spanish National Research Council (CSIC), Jordi Girona 18-26, 08034, Barcelona, Spain.
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2
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Alena-Rodriguez M, Fernandez-Villamarin M, Alfonso I, Mendes PM. Discovery of selective monosaccharide receptors via dynamic combinatorial chemistry. Org Biomol Chem 2024; 22:3854-3859. [PMID: 38639197 PMCID: PMC11095087 DOI: 10.1039/d4ob00015c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Accepted: 04/11/2024] [Indexed: 04/20/2024]
Abstract
The molecular recognition of saccharides by synthetic hosts has become an appealing but elusive task in the last decades. Herein, we combine Dynamic Combinatorial Chemistry (DCC) for the rapid self-assembly and screening of virtual libraries of receptors, with the use of ITC and NMR to validate the hits and molecular modelling to understand the binding mechanisms. We discovered a minimalistic receptor, 1F (N-benzyl-L-phenylalanine), with considerable affinity for fructose (Ka = 1762 M-1) and remarkable selectivity (>50-fold) over other common monosaccharides. The approach accelerates the discovery process of receptors for saccharides.
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Affiliation(s)
- Miguel Alena-Rodriguez
- School of Chemical Engineering, University of Birmingham, Edgbaston, Birmingham, West Midlands, B15 2TT, UK.
- Department of Biological Chemistry, Institute for Advanced Chemistry of Catalonia, IQAC-CSIC, Jordi Girona 18-26, 08034 Barcelona, Spain
| | - Marcos Fernandez-Villamarin
- School of Chemical Engineering, University of Birmingham, Edgbaston, Birmingham, West Midlands, B15 2TT, UK.
| | - Ignacio Alfonso
- Department of Biological Chemistry, Institute for Advanced Chemistry of Catalonia, IQAC-CSIC, Jordi Girona 18-26, 08034 Barcelona, Spain
| | - Paula M Mendes
- School of Chemical Engineering, University of Birmingham, Edgbaston, Birmingham, West Midlands, B15 2TT, UK.
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3
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Grams RJ, Santos WL, Scorei IR, Abad-García A, Rosenblum CA, Bita A, Cerecetto H, Viñas C, Soriano-Ursúa MA. The Rise of Boron-Containing Compounds: Advancements in Synthesis, Medicinal Chemistry, and Emerging Pharmacology. Chem Rev 2024; 124:2441-2511. [PMID: 38382032 DOI: 10.1021/acs.chemrev.3c00663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
Abstract
Boron-containing compounds (BCC) have emerged as important pharmacophores. To date, five BCC drugs (including boronic acids and boroles) have been approved by the FDA for the treatment of cancer, infections, and atopic dermatitis, while some natural BCC are included in dietary supplements. Boron's Lewis acidity facilitates a mechanism of action via formation of reversible covalent bonds within the active site of target proteins. Boron has also been employed in the development of fluorophores, such as BODIPY for imaging, and in carboranes that are potential neutron capture therapy agents as well as novel agents in diagnostics and therapy. The utility of natural and synthetic BCC has become multifaceted, and the breadth of their applications continues to expand. This review covers the many uses and targets of boron in medicinal chemistry.
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Affiliation(s)
- R Justin Grams
- Department of Chemistry and Virginia Tech Center for Drug Discovery, Virginia Tech, 900 West Campus Drive, Blacksburg, Virginia 24061, United States
| | - Webster L Santos
- Department of Chemistry and Virginia Tech Center for Drug Discovery, Virginia Tech, 900 West Campus Drive, Blacksburg, Virginia 24061, United States
| | | | - Antonio Abad-García
- Academia de Fisiología y Sección de Estudios de Posgrado e Investigación, Escuela Superior de Medicina del Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón s/n, 11340 Mexico City, Mexico
| | - Carol Ann Rosenblum
- Department of Chemistry and Virginia Tech Center for Drug Discovery, Virginia Tech, 900 West Campus Drive, Blacksburg, Virginia 24061, United States
| | - Andrei Bita
- Department of Pharmacognosy & Phytotherapy, Faculty of Pharmacy, University of Medicine and Pharmacy of Craiova, 2 Petru Rareş Street, 200349 Craiova, Romania
| | - Hugo Cerecetto
- Centro de Investigaciones Nucleares, Facultad de Ciencias, Universidad de la República, Mataojo 2055, 11400 Montevideo, Uruguay
| | - Clara Viñas
- Institut de Ciència de Materials de Barcelona (ICMAB-CSIC), Campus UAB, 08193 Bellaterra, Spain
| | - Marvin A Soriano-Ursúa
- Academia de Fisiología y Sección de Estudios de Posgrado e Investigación, Escuela Superior de Medicina del Instituto Politécnico Nacional, Plan de San Luis y Díaz Mirón s/n, 11340 Mexico City, Mexico
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4
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Kassem S, McPhee SA, Berisha N, Ulijn RV. Emergence of Cooperative Glucose-Binding Networks in Adaptive Peptide Systems. J Am Chem Soc 2023; 145:9800-9807. [PMID: 37075194 DOI: 10.1021/jacs.3c01620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/21/2023]
Abstract
Minimalistic peptide-based systems that bind sugars in water are challenging to design due to the weakness of interactions and required cooperative contributions from specific amino-acid side chains. Here, we used a bottom-up approach to create peptide-based adaptive glucose-binding networks by mixing glucose with selected sets of input dipeptides (up to 4) in the presence of an amidase to enable in situ reversible peptide elongation, forming mixtures of up to 16 dynamically interacting tetrapeptides. The choice of input dipeptides was based on amino-acid abundance in glucose-binding sites found in the protein data bank, with side chains that can support hydrogen bonding and CH-π interactions. Tetrapeptide sequence amplification patterns, determined through LC-MS analysis, served as a readout for collective interactions and led to the identification of optimized binding networks. Systematic variation of dipeptide input revealed the emergence of two networks of non-covalent hydrogen bonding and CH-π interactions that can co-exist, are cooperative and context-dependent. A cooperative binding mode was determined by studying the binding of the most amplified tetrapeptide (AWAD) with glucose in isolation. Overall, these results demonstrate that the bottom-up design of complex systems can recreate emergent behaviors driven by covalent and non-covalent self-organization that are not observed in reductionist designs and lead to the identification of system-level cooperative binding motifs.
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Affiliation(s)
- Salma Kassem
- Nanoscience Initiative at Advanced Science Research Center of the Graduate Center of the City University of New York, New York, New York 10031, United States
| | - Scott A McPhee
- Nanoscience Initiative at Advanced Science Research Center of the Graduate Center of the City University of New York, New York, New York 10031, United States
| | - Naxhije Berisha
- Nanoscience Initiative at Advanced Science Research Center of the Graduate Center of the City University of New York, New York, New York 10031, United States
- Ph.D. Programs in Biochemistry and Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
- Department of Pharmacology, Memorial Sloan Kettering Cancer Center, New York, New York 10065, United States
- Department of Chemistry Hunter College, City University of New York, New York, New York 10065, United States
| | - Rein V Ulijn
- Nanoscience Initiative at Advanced Science Research Center of the Graduate Center of the City University of New York, New York, New York 10031, United States
- Ph.D. Programs in Biochemistry and Chemistry, The Graduate Center of the City University of New York, New York, New York 10016, United States
- Department of Chemistry Hunter College, City University of New York, New York, New York 10065, United States
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5
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Del Giudice D, Spatola E, Valentini M, Ercolani G, Di Stefano S. Dissipative Dynamic Libraries (DDLs) and Dissipative Dynamic Combinatorial Chemistry (DDCC). CHEMSYSTEMSCHEM 2022. [DOI: 10.1002/syst.202200023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Daniele Del Giudice
- Dipartimento di Chimica Università di Roma La Sapienza and ISB-CNR Sede Secondaria di Roma – Meccanismi di Reazione P.le A. Moro 5 I-00185 Roma Italy
| | - Emanuele Spatola
- Dipartimento di Chimica Università di Roma La Sapienza and ISB-CNR Sede Secondaria di Roma – Meccanismi di Reazione P.le A. Moro 5 I-00185 Roma Italy
| | - Matteo Valentini
- Dipartimento di Chimica Università di Roma La Sapienza and ISB-CNR Sede Secondaria di Roma – Meccanismi di Reazione P.le A. Moro 5 I-00185 Roma Italy
| | - Gianfranco Ercolani
- Dipartimento di Scienze e Tecnologie Chimiche Università di Roma Tor Vergata Via della Ricerca Scientifica 00133 Roma Italy
| | - Stefano Di Stefano
- Dipartimento di Chimica Università di Roma La Sapienza and ISB-CNR Sede Secondaria di Roma – Meccanismi di Reazione P.le A. Moro 5 I-00185 Roma Italy
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6
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Hu C, Jochmann T, Chakraborty P, Neumaier M, Levkin PA, Kappes MM, Biedermann F. Further Dimensions for Sensing in Biofluids: Distinguishing Bioorganic Analytes by the Salt-Induced Adaptation of a Cucurbit[7]uril-Based Chemosensor. J Am Chem Soc 2022; 144:13084-13095. [PMID: 35850489 PMCID: PMC9335531 DOI: 10.1021/jacs.2c01520] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Insufficient binding selectivity of chemosensors often renders biorelevant metabolites indistinguishable by the widely used indicator displacement assay. Array-based chemosensing methods are a common workaround but require additional effort for synthesizing a chemosensor library and setting up a sensing array. Moreover, it can be very challenging to tune the inherent binding preference of macrocyclic systems such as cucurbit[n]urils (CBn) by synthetic means. Using a novel cucurbit[7]uril-dye conjugate that undergoes salt-induced adaptation, we now succeeded in distinguishing 14 bioorganic analytes from each other through the facile stepwise addition of salts. The salt-specific concentration-resolved emission provides additional information about the system at a low synthetic effort. We present a data-driven approach to translate the human-visible curve differences into intuitive pairwise difference measures. Ion mobility experiments combined with density functional theory calculations gave further insights into the binding mechanism and uncovered an unprecedented ternary complex geometry for CB7. TThis work introduces the non-selectively binding, salt-adaptive cucurbit[n]uril system for sensing applications in biofluids such as urine, saliva, and blood serum.
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Affiliation(s)
- Changming Hu
- Institute of Nanotechnology (INT), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz-1, Eggenstein-Leopoldshafen 76344, Germany
| | - Thomas Jochmann
- Department of Computer Science and Automation, Technische Universität Ilmenau, Gustav-Kirchhoff-Str. 2, Ilmenau 98693, Germany
| | - Papri Chakraborty
- Institute of Nanotechnology (INT), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz-1, Eggenstein-Leopoldshafen 76344, Germany.,Institute of Physical Chemistry (IPC), Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, Karlsruhe 76131, Germany
| | - Marco Neumaier
- Institute of Nanotechnology (INT), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz-1, Eggenstein-Leopoldshafen 76344, Germany
| | - Pavel A Levkin
- Institute of Biological and Chemical Systems - Functional Molecular Systems (IBCS-FMS), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz Platz-1, Eggenstein-Leopoldshafen 76344, Germany
| | - Manfred M Kappes
- Institute of Nanotechnology (INT), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz-1, Eggenstein-Leopoldshafen 76344, Germany.,Institute of Physical Chemistry (IPC), Karlsruhe Institute of Technology (KIT), Fritz-Haber-Weg 6, Karlsruhe 76131, Germany
| | - Frank Biedermann
- Institute of Nanotechnology (INT), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz-1, Eggenstein-Leopoldshafen 76344, Germany
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7
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Del Giudice D, Valentini M, Melchiorre G, Spatola E, Di Stefano S. Dissipative Dynamic Covalent Chemistry (DDCvC) Based on the Transimination Reaction. Chemistry 2022; 28:e202200685. [DOI: 10.1002/chem.202200685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Indexed: 11/09/2022]
Affiliation(s)
- Daniele Del Giudice
- Dipartimento di Chimica Università degli Studi di Roma “La Sapienza” P.le A. Moro 5 00185 Rome Italy
| | - Matteo Valentini
- Dipartimento di Chimica Università degli Studi di Roma “La Sapienza” P.le A. Moro 5 00185 Rome Italy
| | - Gabriele Melchiorre
- Dipartimento di Chimica Università degli Studi di Roma “La Sapienza” P.le A. Moro 5 00185 Rome Italy
| | - Emanuele Spatola
- Dipartimento di Chimica Università degli Studi di Roma “La Sapienza” P.le A. Moro 5 00185 Rome Italy
| | - Stefano Di Stefano
- Dipartimento di Chimica Università degli Studi di Roma “La Sapienza” P.le A. Moro 5 00185 Rome Italy
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8
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Daudey GA, Shen M, Singhal A, van der Est P, Sevink GJA, Boyle AL, Kros A. Liposome fusion with orthogonal coiled coil peptides as fusogens: the efficacy of roleplaying peptides. Chem Sci 2021; 12:13782-13792. [PMID: 34760163 PMCID: PMC8549789 DOI: 10.1039/d0sc06635d] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 09/18/2021] [Indexed: 12/18/2022] Open
Abstract
Biological membrane fusion is a highly specific and coordinated process as a multitude of vesicular fusion events proceed simultaneously in a complex environment with minimal off-target delivery. In this study, we develop a liposomal fusion model system with specific recognition using lipidated derivatives of a set of four de novo designed heterodimeric coiled coil (CC) peptide pairs. Content mixing was only obtained between liposomes functionalized with complementary peptides, demonstrating both fusogenic activity of CC peptides and the specificity of this model system. The diverse peptide fusogens revealed important relationships between the fusogenic efficacy and the peptide characteristics. The fusion efficiency increased from 20% to 70% as affinity between complementary peptides decreased, (from KF ≈ 108 to 104 M−1), and fusion efficiency also increased due to more pronounced asymmetric role-playing of membrane interacting ‘K’ peptides and homodimer-forming ‘E’ peptides. Furthermore, a new and highly fusogenic CC pair (E3/P1K) was discovered, providing an orthogonal peptide triad with the fusogenic CC pairs P2E/P2K and P3E/P3K. This E3/P1k pair was revealed, via molecular dynamics simulations, to have a shifted heptad repeat that can accommodate mismatched asparagine residues. These results will have broad implications not only for the fundamental understanding of CC design and how asparagine residues can be accommodated within the hydrophobic core, but also for drug delivery systems by revealing the necessary interplay of efficient peptide fusogens and enabling the targeted delivery of different carrier vesicles at various peptide-functionalized locations. We developed a liposomal fusion model system with specific recognition using a set of heterodimeric coiled coil peptide pairs. This study unravels important structure–fusogenic efficacy relationships of peptide fusogens.![]()
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Affiliation(s)
- Geert A Daudey
- Supramolecular and Biomaterials Chemistry, Leiden Institute of Chemistry, Leiden University P.O. Box 9502 2300 RA Leiden The Netherlands
| | - Mengjie Shen
- Supramolecular and Biomaterials Chemistry, Leiden Institute of Chemistry, Leiden University P.O. Box 9502 2300 RA Leiden The Netherlands
| | - Ankush Singhal
- Supramolecular and Biomaterials Chemistry, Leiden Institute of Chemistry, Leiden University P.O. Box 9502 2300 RA Leiden The Netherlands
| | - Patrick van der Est
- Supramolecular and Biomaterials Chemistry, Leiden Institute of Chemistry, Leiden University P.O. Box 9502 2300 RA Leiden The Netherlands
| | - G J Agur Sevink
- Supramolecular and Biomaterials Chemistry, Leiden Institute of Chemistry, Leiden University P.O. Box 9502 2300 RA Leiden The Netherlands
| | - Aimee L Boyle
- Macromolecular Biochemistry, Leiden Institute of Chemistry, Leiden University P.O. Box 9502 2300 RA Leiden The Netherlands
| | - Alexander Kros
- Supramolecular and Biomaterials Chemistry, Leiden Institute of Chemistry, Leiden University P.O. Box 9502 2300 RA Leiden The Netherlands
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9
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Ferguson Johns HP, Harrison EE, Stingley KJ, Waters ML. Mimicking Biological Recognition: Lessons in Binding Hydrophilic Guests in Water. Chemistry 2021; 27:6620-6644. [PMID: 33048395 DOI: 10.1002/chem.202003759] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Indexed: 01/25/2023]
Abstract
Selective molecular recognition of hydrophilic guests in water plays a fundamental role in a vast number of biological processes, but synthetic mimicry of biomolecular recognition in water still proves challenging both in terms of achieving comparable affinities and selectivities. This Review highlights strategies that have been developed in the field of supramolecular chemistry to selectively and non-covalently bind three classes of biologically relevant molecules: nucleotides, carbohydrates, and amino acids. As several groups have systematically modified receptors for a specific guest, an evolutionary perspective is also provided in some cases. Trends in the most effective binding forces for each class are described, providing insight into selectivity and potential directions for future work.
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Affiliation(s)
- Hannah P Ferguson Johns
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - Emily E Harrison
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - Kyla J Stingley
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - Marcey L Waters
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
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10
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Fuchs S, Ernst AU, Wang LH, Shariati K, Wang X, Liu Q, Ma M. Hydrogels in Emerging Technologies for Type 1 Diabetes. Chem Rev 2020; 121:11458-11526. [DOI: 10.1021/acs.chemrev.0c01062] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Stephanie Fuchs
- Biological and Environmental Engineering, Cornell University, Ithaca, New York 14853, United States
| | - Alexander U. Ernst
- Biological and Environmental Engineering, Cornell University, Ithaca, New York 14853, United States
| | - Long-Hai Wang
- Biological and Environmental Engineering, Cornell University, Ithaca, New York 14853, United States
| | - Kaavian Shariati
- Biological and Environmental Engineering, Cornell University, Ithaca, New York 14853, United States
| | - Xi Wang
- Biological and Environmental Engineering, Cornell University, Ithaca, New York 14853, United States
| | - Qingsheng Liu
- Biological and Environmental Engineering, Cornell University, Ithaca, New York 14853, United States
| | - Minglin Ma
- Biological and Environmental Engineering, Cornell University, Ithaca, New York 14853, United States
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11
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Klepel F, Ravoo BJ. A dynamic combinatorial library for biomimetic recognition of dipeptides in water. Beilstein J Org Chem 2020; 16:1588-1595. [PMID: 32704325 PMCID: PMC7356556 DOI: 10.3762/bjoc.16.131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Accepted: 06/26/2020] [Indexed: 11/23/2022] Open
Abstract
Small peptides are involved in countless biological processes. Hence selective binding motifs for peptides can be powerful tools for labeling or inhibition. Finding those binding motifs, especially in water which competes for intermolecular H-bonds, poses an enormous challenge. A dynamic combinatorial library can be a powerful method to overcome this issue. We previously reported artificial receptors emerging form a dynamic combinatorial library of peptide building blocks. In this study we aimed to broaden this scope towards recognition of small peptides. Employing CXC peptide building blocks, we found that cyclic dimers of oxidized CFC bind to the aromatic peptides FF and YY (K ≈ 229–702 M−1), while AA binds significantly weaker (K ≈ 65–71 M−1).
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Affiliation(s)
- Florian Klepel
- Organic Chemistry Institute and Center for Soft Nanoscience, Westfälische Wilhelms-Universität Münster, Correnstraße 40, 48149 Münster, Germany
| | - Bart Jan Ravoo
- Organic Chemistry Institute and Center for Soft Nanoscience, Westfälische Wilhelms-Universität Münster, Correnstraße 40, 48149 Münster, Germany
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12
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Hayashi T, Ohishi Y, Abe H, Inouye M. Preferential Recognition and Extraction to Pentoses over Hexoses by a D6h-Symmetrical Ethynylphenol Macrocycle with Six Inner Phenolic Hydroxy Groups. J Org Chem 2020; 85:1927-1934. [PMID: 31896252 DOI: 10.1021/acs.joc.9b02639] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
A macrocycle consisting of six ethynylphenol units was developed as a host architecture for saccharides. The rigid framework of the macrocycle suppressed the intramolecular hydrogen-bonding between adjacent phenolic hydroxy groups and recognized saccharides by intermolecular hydrogen-bonding within the hole. The well-defined hydrogen-bonding sites enabled the size-selective guest recognition and showed preference to pentoses over hexoses.
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Affiliation(s)
- Tomoya Hayashi
- Graduate School of Pharmaceutical Sciences , University of Toyama , Toyama 930-0194 , Japan
| | - Yuki Ohishi
- Graduate School of Pharmaceutical Sciences , University of Toyama , Toyama 930-0194 , Japan
| | - Hajime Abe
- Faculty of Pharmaceutical Sciences , Himeji Dokkyo University , Himeji , Hyogo 670-8524 , Japan
| | - Masahiko Inouye
- Graduate School of Pharmaceutical Sciences , University of Toyama , Toyama 930-0194 , Japan
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13
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Tommasone S, Allabush F, Tagger YK, Norman J, Köpf M, Tucker JHR, Mendes PM. The challenges of glycan recognition with natural and artificial receptors. Chem Soc Rev 2019; 48:5488-5505. [PMID: 31552920 DOI: 10.1039/c8cs00768c] [Citation(s) in RCA: 95] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Glycans - simple or complex carbohydrates - play key roles as recognition determinants and modulators of numerous physiological and pathological processes. Thus, many biotechnological, diagnostic and therapeutic opportunities abound for molecular recognition entities that can bind glycans with high selectivity and affinity. This review begins with an overview of the current biologically and synthetically derived glycan-binding scaffolds that include antibodies, lectins, aptamers and boronic acid-based entities. It is followed by a more detailed discussion on various aspects of their generation, structure and recognition properties. It serves as the basis for highlighting recent key developments and technical challenges that must be overcome in order to fully deal with the specific recognition of a highly diverse and complex range of glycan structures.
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Affiliation(s)
- Stefano Tommasone
- School of Chemical Engineering, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
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14
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Ohishi Y, Murase M, Abe H, Inouye M. Enantioselective Solid–Liquid Extraction of Native Saccharides with Chiral BINOL-Based Pyridine–Phenol Type Macrocycles. Org Lett 2019; 21:6202-6207. [DOI: 10.1021/acs.orglett.9b01980] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yuki Ohishi
- Graduate School of Pharmaceutical Sciences, University of Toyama, Toyama 930-0194, Japan
| | - Mikino Murase
- Graduate School of Pharmaceutical Sciences, University of Toyama, Toyama 930-0194, Japan
| | - Hajime Abe
- Faculty of Pharmaceutical Sciences, Himeji Dokkyo University, Hyogo 670-8524, Japan
| | - Masahiko Inouye
- Graduate School of Pharmaceutical Sciences, University of Toyama, Toyama 930-0194, Japan
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15
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Zhang W, Li Y, Liang Y, Gao N, Liu C, Wang S, Yin X, Li G. Poly(ionic liquid)s as a distinct receptor material to create a highly-integrated sensing platform for efficiently identifying numerous saccharides. Chem Sci 2019; 10:6617-6623. [PMID: 31367313 PMCID: PMC6624988 DOI: 10.1039/c9sc02266j] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Accepted: 05/22/2019] [Indexed: 12/13/2022] Open
Abstract
A highly-integrated sphere-based sensing platform for directly identifying numerous saccharides very efficiently is developed.
Saccharides have strong hydrophilicities, and are complex molecular structures with subtle structure differences, and tremendous structural variations. The creation of one sensing platform capable of efficiently identifying such target systems presents a huge challenge. Using the integration of unique multiple noncovalent interactions simultaneously occurring in poly(ionic liquid)s (PILs) with multiple signaling channels, in this research an aggregation-induced emission (AIE)-doped photonic structured PIL sphere is constructed. It is found that such a sphere can serve as a highly integrated platform to provide abundant fingerprints for directly sensing numerous saccharides with an unprecedented efficiency. As a demonstration, 23 saccharides can be conveniently identified using only one sphere. More importantly, by using simple ion-exchanges of PIL receptors or/and increasing the AIE signaling channels, this platform is able to perform, on demand, different sensing tasks very efficiently. This is demonstrated by using it for the detection of difficult targets, such as greatly extended saccharides as well as mixed targets, in real-life examples on one or two spheres. The findings show that this new class of platform is very promising for addressing the challenges of identifying saccharides.
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Affiliation(s)
- Wanlin Zhang
- Department of Chemistry , Key Laboratory of Organic Optoelectronics and Molecular Engineering , Tsinghua University , Beijing 100084 , PR China . .,Aerospace Research Institute of Special Material and Processing Technology , Beijing 100074 , PR China
| | - Yao Li
- Institute of Process Engineering , Chinese Academy of Sciences , Beijing 100190 , PR China
| | - Yun Liang
- Department of Chemistry , Key Laboratory of Organic Optoelectronics and Molecular Engineering , Tsinghua University , Beijing 100084 , PR China .
| | - Ning Gao
- Department of Chemistry , Key Laboratory of Organic Optoelectronics and Molecular Engineering , Tsinghua University , Beijing 100084 , PR China .
| | - Chengcheng Liu
- Department of Chemistry , Key Laboratory of Organic Optoelectronics and Molecular Engineering , Tsinghua University , Beijing 100084 , PR China .
| | - Shiqiang Wang
- Department of Chemistry , Key Laboratory of Organic Optoelectronics and Molecular Engineering , Tsinghua University , Beijing 100084 , PR China .
| | - Xianpeng Yin
- Aerospace Research Institute of Special Material and Processing Technology , Beijing 100074 , PR China
| | - Guangtao Li
- Department of Chemistry , Key Laboratory of Organic Optoelectronics and Molecular Engineering , Tsinghua University , Beijing 100084 , PR China .
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16
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Francesconi O, Roelens S. Biomimetic Carbohydrate‐Binding Agents (CBAs): Binding Affinities and Biological Activities. Chembiochem 2019; 20:1329-1346. [DOI: 10.1002/cbic.201800742] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Indexed: 12/15/2022]
Affiliation(s)
- Oscar Francesconi
- Department of Chemistry and INSTMUniversity of Florence Polo Scientifico e Tecnologico 50019 Sesto Fiorentino, Firenze Italy
| | - Stefano Roelens
- Department of Chemistry and INSTMUniversity of Florence Polo Scientifico e Tecnologico 50019 Sesto Fiorentino, Firenze Italy
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17
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Lafuente M, Alfonso I, Solà J. Structurally Selective Assembly of a Specific Macrobicycle from a Dynamic Library of Pseudopeptidic Disulfides. CHEMSYSTEMSCHEM 2019. [DOI: 10.1002/syst.201900002] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- María Lafuente
- Department of Biological ChemistryInstitute for Advanced Chemistry of Catalonia c/ Jordi Girona 18–26 Barcelona 08034 Spain
| | - Ignacio Alfonso
- Department of Biological ChemistryInstitute for Advanced Chemistry of Catalonia c/ Jordi Girona 18–26 Barcelona 08034 Spain
| | - Jordi Solà
- Department of Biological ChemistryInstitute for Advanced Chemistry of Catalonia c/ Jordi Girona 18–26 Barcelona 08034 Spain
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18
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Ohishi Y, Yamamoto N, Abe H, Inouye M. Nonplanar Macrocycle Consisting of Four Pyridine and Phenol Units Connected with Acetylene Bonds Displaying Preferential Binding to Maltoside over Monosaccharides. J Org Chem 2018; 83:5766-5770. [DOI: 10.1021/acs.joc.8b00062] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Yuki Ohishi
- Graduate School of Pharmaceutical Sciences, University of Toyama, Toyama 930-0194, Japan
| | - Naoto Yamamoto
- Graduate School of Pharmaceutical Sciences, University of Toyama, Toyama 930-0194, Japan
| | - Hajime Abe
- Graduate School of Pharmaceutical Sciences, University of Toyama, Toyama 930-0194, Japan
| | - Masahiko Inouye
- Graduate School of Pharmaceutical Sciences, University of Toyama, Toyama 930-0194, Japan
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19
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ten Brummelhuis N, Wilke P, Börner HG. Identification of Functional Peptide Sequences to Lead the Design of Precision Polymers. Macromol Rapid Commun 2017; 38. [DOI: 10.1002/marc.201700632] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2017] [Revised: 09/26/2017] [Indexed: 12/16/2022]
Affiliation(s)
- Niels ten Brummelhuis
- Laboratory for Organic Synthesis of Functional Systems; Department of Chemistry; Humboldt-Universität zu Berlin; Brook-Taylor-Str. 2 D-12489 Berlin Germany
| | - Patrick Wilke
- Laboratory for Organic Synthesis of Functional Systems; Department of Chemistry; Humboldt-Universität zu Berlin; Brook-Taylor-Str. 2 D-12489 Berlin Germany
| | - Hans G. Börner
- Laboratory for Organic Synthesis of Functional Systems; Department of Chemistry; Humboldt-Universität zu Berlin; Brook-Taylor-Str. 2 D-12489 Berlin Germany
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20
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Daudey G, Zope HR, Voskuhl J, Kros A, Boyle AL. Membrane-Fusogen Distance Is Critical for Efficient Coiled-Coil-Peptide-Mediated Liposome Fusion. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017; 33:12443-12452. [PMID: 28980816 PMCID: PMC5666511 DOI: 10.1021/acs.langmuir.7b02931] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/19/2017] [Revised: 10/02/2017] [Indexed: 06/07/2023]
Abstract
We have developed a model system for membrane fusion that utilizes lipidated derivatives of a heterodimeric coiled-coil pair dubbed E3 (EIAALEK)3 and K3 (KIAALKE)3. In this system, peptides are conjugated to a lipid anchor via a poly(ethylene glycol) (PEG) spacer, and this contribution studies the influence of the PEG spacer length, coupled with the type of lipid anchor, on liposome-liposome fusion. The effects of these modifications on peptide secondary structure, their interactions with liposomes, and their ability to mediate fusion were studied using a variety of different content mixing experiments and CD spectroscopy. Our results demonstrate the asymmetric role of the peptides in the fusion process because alterations to the PEG spacer length affect E3 and K3 differently. We conclude that negatively charged E3 acts as a "handle" for positively charged K3 and facilitates liposome docking, the first stage of the fusion process, through coiled-coil formation. The efficacy of this E3 handle is enhanced by longer spacer lengths. K3 directs the fusion process via peptide-membrane interactions, but the length of the PEG spacer plays two competing roles: a PEG4/PEG8 spacer length is optimal for membrane destabilization; however, a PEG12 spacer increases the fusion efficiency over time by improving the peptide accessibility for successive fusion events. Both the anchor type and spacer length affect the peptide structure; a cholesterol anchor appears to enhance K3-membrane interactions and thus mediates fusion more efficiently.
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Affiliation(s)
- Geert
A. Daudey
- Supramolecular and Biomaterials Chemistry, Leiden
Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | | | | | - Alexander Kros
- Supramolecular and Biomaterials Chemistry, Leiden
Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
| | - Aimee L. Boyle
- Supramolecular and Biomaterials Chemistry, Leiden
Institute of Chemistry, Leiden University, P.O. Box 9502, 2300 RA Leiden, The Netherlands
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21
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Yamashina M, Akita M, Hasegawa T, Hayashi S, Yoshizawa M. A polyaromatic nanocapsule as a sucrose receptor in water. SCIENCE ADVANCES 2017; 3:e1701126. [PMID: 28875169 PMCID: PMC5573335 DOI: 10.1126/sciadv.1701126] [Citation(s) in RCA: 84] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Accepted: 08/01/2017] [Indexed: 06/07/2023]
Abstract
Selective recognition of saccharides by artificial receptors in water is a challenging goal due to their strong hydrophilicities and complex molecular structures with subtle regio- and stereochemical differences. We report the selective and efficient encapsulation of d-sucrose within a coordination-driven molecular capsule from natural saccharide mixtures in water (~100% selectivity, >85% yield, and ~103 M-1 binding constant). Unlike previous artificial receptors and natural receptors that rely on multiple hydrogen-bonding interactions, theoretical calculations and control experiments indicate that the observed unique selectivity arises from multiple CH-π interactions between the sucrose hydrocarbon backbone and the shape-complementary polyaromatic cavity (~1 nm in diameter) of the capsule.
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Affiliation(s)
- Masahiro Yamashina
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
| | - Munetaka Akita
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
| | - Taisuke Hasegawa
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa, Oiwakecho, Sakyo, Kyoto 606-8502, Japan
| | - Shigehiko Hayashi
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa, Oiwakecho, Sakyo, Kyoto 606-8502, Japan
| | - Michito Yoshizawa
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 4259 Nagatsuta, Midori-ku, Yokohama 226-8503, Japan
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22
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Li T, Gao W, Liang J, Zha M, Chen Y, Zhao Y, Wu C. Biscysteine-Bearing Peptide Probes To Reveal Extracellular Thiol–Disulfide Exchange Reactions Promoting Cellular Uptake. Anal Chem 2017; 89:8501-8508. [DOI: 10.1021/acs.analchem.7b02084] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Tao Li
- The MOE Key Laboratory
of Spectrochemical Analysis and Instrumentation, State Key Laboratory
of Physical Chemistry of Solid Surfaces, Department of Chemistry,
College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, P.R. China
| | - Wei Gao
- The MOE Key Laboratory
of Spectrochemical Analysis and Instrumentation, State Key Laboratory
of Physical Chemistry of Solid Surfaces, Department of Chemistry,
College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, P.R. China
| | - Jingjing Liang
- The MOE Key Laboratory
of Spectrochemical Analysis and Instrumentation, State Key Laboratory
of Physical Chemistry of Solid Surfaces, Department of Chemistry,
College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, P.R. China
| | - Mirao Zha
- The MOE Key Laboratory
of Spectrochemical Analysis and Instrumentation, State Key Laboratory
of Physical Chemistry of Solid Surfaces, Department of Chemistry,
College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, P.R. China
| | - Yaqi Chen
- The MOE Key Laboratory
of Spectrochemical Analysis and Instrumentation, State Key Laboratory
of Physical Chemistry of Solid Surfaces, Department of Chemistry,
College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, P.R. China
| | - Yibing Zhao
- The MOE Key Laboratory
of Spectrochemical Analysis and Instrumentation, State Key Laboratory
of Physical Chemistry of Solid Surfaces, Department of Chemistry,
College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, P.R. China
| | - Chuanliu Wu
- The MOE Key Laboratory
of Spectrochemical Analysis and Instrumentation, State Key Laboratory
of Physical Chemistry of Solid Surfaces, Department of Chemistry,
College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian 361005, P.R. China
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23
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Gunasekara RW, Zhao Y. A General Method for Selective Recognition of Monosaccharides and Oligosaccharides in Water. J Am Chem Soc 2017; 139:829-835. [PMID: 27983819 PMCID: PMC5243169 DOI: 10.1021/jacs.6b10773] [Citation(s) in RCA: 67] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Molecular recognition of carbohydrates plays vital roles in biology but has been difficult to achieve with synthetic receptors. Through covalent imprinting of carbohydrates in boroxole-functionalized cross-linked micelles, we prepared nanoparticle receptors for a wide variety of mono- and oligosaccharides. The boroxole functional monomer bound the sugar templates through cis-1,2-diol, cis-3,4-diol, and trans-4,6-diol. The protein-sized nanoparticles showed excellent selectivity for d-aldohexoses in water with submillimolar binding affinities and completely distinguished the three biologically important hexoses (glucose, mannose, and galactose). Glycosides with nonpolar aglycon showed stronger binding due to enhanced hydrophobic interactions. Oligosaccharides were distinguished on the basis of their monosaccharide building blocks, glycosidic linkages, chain length, as well as additional functional groups that could interact with the nanoparticles.
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Affiliation(s)
| | - Yan Zhao
- Department of Chemistry, Iowa State University, Ames, Iowa 50011-3111
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24
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Klepel F, Ravoo BJ. Dynamic covalent chemistry in aqueous solution by photoinduced radical disulfide metathesis. Org Biomol Chem 2017; 15:3840-3842. [PMID: 28406256 DOI: 10.1039/c7ob00667e] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Photoinduced radical disulfide metathesis (PRDM) is a dynamic covalent reaction that requires UV light to induce the homolytic cleavage of the disulfide bond, thus offering the opportunity to construct dynamic covalent systems that are dormant and can be photo-activated on demand.
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Affiliation(s)
- Florian Klepel
- Organic Chemistry Institute and Center for Soft Nanoscience
- Westfälische Wilhelms-Universität Münster
- 48149 Münster
- Germany
| | - Bart Jan Ravoo
- Organic Chemistry Institute and Center for Soft Nanoscience
- Westfälische Wilhelms-Universität Münster
- 48149 Münster
- Germany
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25
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Atcher J, Solà J, Alfonso I. Pseudopeptidic compounds for the generation of dynamic combinatorial libraries of chemically diverse macrocycles in aqueous media. Org Biomol Chem 2017; 15:213-219. [DOI: 10.1039/c6ob02441f] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The combination of pseudopeptidic dithiol building blocks leads to the generation of highly diverse dynamic libraries of macrocycles in aqueous media.
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Affiliation(s)
- Joan Atcher
- Department of Biological Chemistry and Molecular Modelling
- IQAC-CSIC
- Barcelona
- Spain
| | - Jordi Solà
- Department of Biological Chemistry and Molecular Modelling
- IQAC-CSIC
- Barcelona
- Spain
| | - Ignacio Alfonso
- Department of Biological Chemistry and Molecular Modelling
- IQAC-CSIC
- Barcelona
- Spain
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26
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Abe H, Yoneda T, Ohishi Y, Inouye M. D3h-Symmetrical Shape-Persistent Macrocycles Consisting of Pyridine-Acetylene-Phenol Conjugates as an Efficient Host Architecture for Saccharide Recognition. Chemistry 2016; 22:18944-18952. [DOI: 10.1002/chem.201603987] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2016] [Indexed: 12/11/2022]
Affiliation(s)
- Hajime Abe
- Graduate School of Pharmaceutical Sciences; University of Toyama, Sugitani 2630; Toyama 930-0194 Japan
| | - Tetsuhiro Yoneda
- Graduate School of Pharmaceutical Sciences; University of Toyama, Sugitani 2630; Toyama 930-0194 Japan
| | - Yuki Ohishi
- Graduate School of Pharmaceutical Sciences; University of Toyama, Sugitani 2630; Toyama 930-0194 Japan
| | - Masahiko Inouye
- Graduate School of Pharmaceutical Sciences; University of Toyama, Sugitani 2630; Toyama 930-0194 Japan
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27
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Awino JK, Gunasekara RW, Zhao Y. Selective Recognition of d-Aldohexoses in Water by Boronic Acid-Functionalized, Molecularly Imprinted Cross-Linked Micelles. J Am Chem Soc 2016; 138:9759-62. [PMID: 27442012 PMCID: PMC4982515 DOI: 10.1021/jacs.6b04613] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Molecular imprinting within cross-linked micelles using 4-vinylphenylboronate derivatives of carbohydrates provided water-soluble nanoparticle receptors selective for the carbohydrate templates. Complete differentiation of d-aldohexoses could be achieved by these receptors if a single inversion of hydroxyl occurred at C2 or C4 of the sugar or if two or more inversions took place. Glycosides with a hydrophobic aglycan displayed stronger binding due to increased hydrophobic interactions.
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Affiliation(s)
- Joseph K. Awino
- Department of Chemistry, Iowa State University, Ames, Iowa 50011-3111
| | | | - Yan Zhao
- Department of Chemistry, Iowa State University, Ames, Iowa 50011-3111
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28
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Otremba T, Ravoo BJ. Linear and Cyclic Carbohydrate Receptors Based on Peptides Modified with Boronic Acids. ChemistrySelect 2016. [DOI: 10.1002/slct.201600567] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Tobias Otremba
- Organic Chemistry Institute; Westfälische Wilhelms-Universtät Münster; Corrensstrasse 40 48149 Münster Germany
| | - Bart Jan Ravoo
- Organic Chemistry Institute; Westfälische Wilhelms-Universtät Münster; Corrensstrasse 40 48149 Münster Germany
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29
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Li X, Xiong Y, Qing G, Jiang G, Li X, Sun T, Liang X. Bioinspired Saccharide-Saccharide Interaction and Smart Polymer for Specific Enrichment of Sialylated Glycopeptides. ACS APPLIED MATERIALS & INTERFACES 2016; 8:13294-13302. [PMID: 27172767 DOI: 10.1021/acsami.6b03104] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Abnormal sialylation of proteins is highly associated with many major diseases, such as cancers and neurodegenerative diseases. However, this study is challenging owing to the difficulty in enriching trace sialylated glycopeptides (SGs) from highly complex biosamples. The key to solving this problem relies strongly on the design of novel SG receptors to capture the sialic acid (SA) moieties in a specific and tunable manner. Inspired by the saccharide-saccharide interactions in life systems, here we introduce saccharide-based SG receptors into this study. Allose (a monosaccharide) displays specific and pH-sensitive binding toward SAs. Integrating allose units into a polyacrylamide chain generates a saccharide-responsive smart copolymer (SRSC). Such design significantly improves the selectivity of SA binding; meanwhile, this binding can be intelligently triggered in a large extent by solution polarity and pH. As a result, SRSC exhibits high-performance enrichment capacity toward SGs, even under 500-fold interference of bovine serum albumins digests, which is notably higher than conventional materials. In real biosamples of HeLa cell lysates, 180 sialylated glycosylation sites (SGSs) have been identified using SRSC. This is apparently superior to those obtained by SA-binding lectins including WGA (18 SGSs) and SNA (22 SGSs). Furthermore, lactose displays good chemoselectivity toward diverse disaccharides, which indicated the good potential of lactose-based material in glycan discrimination. Subsequently, the lactose-based SRSC facilitates the stepwise isolation of O-linked or N-linked SGs with the same peptide sequence but varied glycans by CH3CN/H2O gradients. This study opens a new avenue for next generation of glycopeptide enrichment materials.
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Affiliation(s)
- Xiuling Li
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , 457 Zhongshan Road, Dalian 116023, P. R. China
| | - Yuting Xiong
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology , 122 Luoshi Road, Wuhan 430070, P. R. China
| | - Guangyan Qing
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology , 122 Luoshi Road, Wuhan 430070, P. R. China
| | - Ge Jiang
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , 457 Zhongshan Road, Dalian 116023, P. R. China
| | - Xianqin Li
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , 457 Zhongshan Road, Dalian 116023, P. R. China
| | - Taolei Sun
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing, Wuhan University of Technology , 122 Luoshi Road, Wuhan 430070, P. R. China
| | - Xinmiao Liang
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , 457 Zhongshan Road, Dalian 116023, P. R. China
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30
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Renney CM, Fukuhara G, Inoue Y, Davis AP. Binding or aggregation? Hazards of interpretation in studies of molecular recognition by porphyrins in water. Chem Commun (Camb) 2016; 51:9551-4. [PMID: 25970199 DOI: 10.1039/c5cc02768c] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Reports have suggested that polar porphyrins such as tetraphenylporphine tetrasulfonate (TPPS) can serve as carbohydrate receptors in water. Here we find that TPPS shows changes in UV-visible absorption when treated with glucose, but that these are best explained by altered aggregation states and not by formation of a closely-bound complex.
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Affiliation(s)
- Charles M Renney
- School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, UK.
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31
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Zheng Y, Zhai L, Zhao Y, Wu C. Orthogonal Cysteine–Penicillamine Disulfide Pairing for Directing the Oxidative Folding of Peptides. J Am Chem Soc 2015; 137:15094-7. [DOI: 10.1021/jacs.5b10779] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Yiwu Zheng
- The MOE Key Laboratory of
Spectrochemical Analysis and Instrumentation, State Key Laboratory
of Physical Chemistry of Solid Surfaces, Department of Chemistry,
College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Linxiang Zhai
- The MOE Key Laboratory of
Spectrochemical Analysis and Instrumentation, State Key Laboratory
of Physical Chemistry of Solid Surfaces, Department of Chemistry,
College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Yibing Zhao
- The MOE Key Laboratory of
Spectrochemical Analysis and Instrumentation, State Key Laboratory
of Physical Chemistry of Solid Surfaces, Department of Chemistry,
College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
| | - Chuanliu Wu
- The MOE Key Laboratory of
Spectrochemical Analysis and Instrumentation, State Key Laboratory
of Physical Chemistry of Solid Surfaces, Department of Chemistry,
College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, P. R. China
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32
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Chen G, Qiu J, Xu J, Fang X, Liu Y, Liu S, Wei S, Jiang R, Luan T, Zeng F, Zhu F, Ouyang G. A novel probe based on phenylboronic acid functionalized carbon nanotubes for ultrasensitive carbohydrate determination in biofluids and semi-solid biotissues. Chem Sci 2015; 7:1487-1495. [PMID: 29910906 PMCID: PMC5975936 DOI: 10.1039/c5sc03992d] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2015] [Accepted: 11/19/2015] [Indexed: 12/26/2022] Open
Abstract
An ultrasensitive SPME probe based on phenylboronic acid functionalized CNTs is applied for direct in vitro or in vivo recognition of carbohydrates in biofluids as well as semi-solid biotissues.
Carbohydrates are known to be involved in a wide range of biological and pathological processes. However, due to the presence of multiple hydroxyl groups, carbohydrate recognition is a particular challenge. Herein, we reported an ultrasensitive solid-phase microextraction (SPME) probe based on phenylboronic acid (PBA) functionalized carbon nanotubes (CNTs) for direct in vitro or in vivo recognition of carbohydrates in biofluids as well as semi-solid biotissues. The coating of the proposed probe possessed a 3D interconnected porous architecture formed by the stacking of CNTs. As a result, the binding capacity toward carbohydrates was excellent. The proposed approach was demonstrated to be much superior to most carbohydrate sensors, including higher sensitivity, wider linear range, and excellent qualitative ability in multi-carbohydrate systems. Thus, this approach opens up new avenues for the facile and efficient recognition of carbohydrates for important applications such as glycomics.
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Affiliation(s)
- Guosheng Chen
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Junlang Qiu
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Jianqiao Xu
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Xu'an Fang
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Yan Liu
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Shuqin Liu
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Songbo Wei
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Ruifen Jiang
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Tiangang Luan
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Feng Zeng
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Fang Zhu
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
| | - Gangfeng Ouyang
- MOE Key Laboratory of Aquatic Product Safety/KLGHEI of Environment and Energy Chemistry , School of Chemistry and Chemical Engineering , Sun Yat-sen University , Guangzhou 510275 , P. R. China . ; ; ; Tel: +86-020-84110845
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Lafuente M, Atcher J, Solà J, Alfonso I. Adaptive Correction from Virtually Complex Dynamic Libraries: The Role of Noncovalent Interactions in Structural Selection and Folding. Chemistry 2015; 21:17002-9. [DOI: 10.1002/chem.201501415] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2015] [Indexed: 11/08/2022]
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Ohishi Y, Abe H, Inouye M. Native Mannose‐Dominant Extraction by Pyridine–Phenol Alternating Oligomers Having an Extremely Efficient Repeating Motif of Hydrogen‐Bonding Acceptors and Donors. Chemistry 2015; 21:16504-11. [DOI: 10.1002/chem.201503149] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2015] [Indexed: 12/12/2022]
Affiliation(s)
- Yuki Ohishi
- Graduate School of Pharmaceutical Sciences, University of Toyama, Toyama 930‐0194 (Japan)
| | - Hajime Abe
- Graduate School of Pharmaceutical Sciences, University of Toyama, Toyama 930‐0194 (Japan)
| | - Masahiko Inouye
- Graduate School of Pharmaceutical Sciences, University of Toyama, Toyama 930‐0194 (Japan)
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35
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Schaufelberger F, Ramström O. Dynamic covalent organocatalysts discovered from catalytic systems through rapid deconvolution screening. Chemistry 2015; 21:12735-40. [PMID: 26174068 PMCID: PMC4557047 DOI: 10.1002/chem.201502088] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2015] [Indexed: 11/11/2022]
Abstract
The first example of a bifunctional organocatalyst assembled through dynamic covalent chemistry (DCC) is described. The catalyst is based on reversible imine chemistry and can catalyze the Morita-Baylis-Hillman (MBH) reaction of enones with aldehydes or N-tosyl imines. Furthermore, these dynamic catalysts were shown to be optimizable through a systemic screening approach, in which large mixtures of catalyst structures were generated, and the optimal catalyst could be directly identified by using dynamic deconvolution. This strategy allowed one-pot synthesis and in situ evaluation of several potential catalysts without the need to separate, characterize, and purify each individual structure. The systems were furthermore shown to catalyze and re-equilibrate their own formation through a previously unknown thiourea-catalyzed transimination process.
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Affiliation(s)
- Fredrik Schaufelberger
- Department of Chemistry, KTH - Royal Institute of TechnologyTeknikringen 30, 10044 Stockholm (Sweden) E-mail:
| | - Olof Ramström
- Department of Chemistry, KTH - Royal Institute of TechnologyTeknikringen 30, 10044 Stockholm (Sweden) E-mail:
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36
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Gelation-driven Dynamic Systemic Resolution: in situ Generation and Self-Selection of an Organogelator. Sci Rep 2015; 5:11065. [PMID: 26062041 PMCID: PMC4462186 DOI: 10.1038/srep11065] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2014] [Accepted: 05/15/2015] [Indexed: 01/26/2023] Open
Abstract
An organogelator was produced and identified from a dynamic imine system, resolved and amplified by selective gelation. The formation of the organogel was monitored in situ by (1)H NMR, showing the existence of multiple reversible reactions operating simultaneously, and the redistribution of the involved species during gelation. The formed organogelator proved effective with a range of organic solvents, including DMSO, toluene, and longer, linear alcohols.
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37
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Solà J, Lafuente M, Atcher J, Alfonso I. Constitutional self-selection from dynamic combinatorial libraries in aqueous solution through supramolecular interactions. Chem Commun (Camb) 2015; 50:4564-6. [PMID: 24647648 DOI: 10.1039/c4cc00245h] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
We describe the predominant formation of a specific constitution arising from the combination of building blocks with different topologies through disulphide chemistry in a Dynamic Combinatorial Library (DCL). The supramolecular interactions established by a zwitterionic cysteine moiety are responsible for the self-selection of one product from all the virtual members of a large library.
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Affiliation(s)
- Jordi Solà
- Department of Biological Chemistry and Molecular Modelling, IQAC-CSIC, Jordi Girona 18-26, Barcelona, Spain.
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38
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Destecroix H, Renney CM, Mooibroek TJ, Carter TS, Stewart PFN, Crump MP, Davis AP. Affinity enhancement by dendritic side chains in synthetic carbohydrate receptors. Angew Chem Int Ed Engl 2015; 54:2057-61. [PMID: 25645064 PMCID: PMC4506558 DOI: 10.1002/anie.201409124] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2014] [Revised: 12/01/2014] [Indexed: 01/23/2023]
Abstract
Dendritic side chains have been used to modify the binding environment in anthracene-based synthetic carbohydrate receptors. Control of length, charge, and branching enabled the positioning of side-chain carboxylate groups in such a way that they assisted in binding substrates rather than blocking the cavity. Conformational degeneracy in the dendrimers resulted in effective preorganization despite the flexibility of the system. Strong binding was observed to glucosammonium ions in water, with Ka values up to 7000 M(-1) . Affinities for uncharged substrates (glucose and N-acetylglucosamine) were also enhanced, despite competition from solvent and the absence of electrostatic interactions.
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Affiliation(s)
- Harry Destecroix
- School of Chemistry, University of Bristol, Cantock's CloseBristol, BS8 1TS (UK)
| | - Charles M Renney
- School of Chemistry, University of Bristol, Cantock's CloseBristol, BS8 1TS (UK)
| | - Tiddo J Mooibroek
- School of Chemistry, University of Bristol, Cantock's CloseBristol, BS8 1TS (UK)
| | - Tom S Carter
- School of Chemistry, University of Bristol, Cantock's CloseBristol, BS8 1TS (UK)
| | - Patrick F N Stewart
- School of Chemistry, University of Bristol, Cantock's CloseBristol, BS8 1TS (UK)
| | - Matthew P Crump
- School of Chemistry, University of Bristol, Cantock's CloseBristol, BS8 1TS (UK)
| | - Anthony P Davis
- School of Chemistry, University of Bristol, Cantock's CloseBristol, BS8 1TS (UK)
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39
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Mu B, Ahn J, McNicholas TP, Strano MS. Generating Selective Saccharide Binding Affinity of Phenyl Boronic Acids by using Single-Walled Carbon Nanotube Corona Phases. Chemistry 2015; 21:4523-8. [DOI: 10.1002/chem.201500175] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2015] [Indexed: 12/25/2022]
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Miron CE, Petitjean A. Sugar recognition: designing artificial receptors for applications in biological diagnostics and imaging. Chembiochem 2015; 16:365-79. [PMID: 25619151 DOI: 10.1002/cbic.201402549] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2014] [Indexed: 01/23/2023]
Abstract
At the cellular level, numerous processes ranging from protein folding to disease development are mediated by a sugar-based molecular information system that is much less well known than its DNA- or protein-based counterparts. The subtle structural diversity of such sugar tags nevertheless offers an excellent, if challenging, opportunity to design receptors for the selective recognition of biorelevant sugars. Over the past 40 years, growing interest in the field of sugar recognition has led to the development of several promising artificial receptors, which could soon find widespread use in medical diagnostics and cell imaging.
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Affiliation(s)
- Caitlin E Miron
- Department of Chemistry, Queen's University, Chernoff Hall, 90 Bader Lane, Kingston ON K7L 3N6 (Canada)
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41
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Destecroix H, Renney CM, Mooibroek TJ, Carter TS, Stewart PFN, Crump MP, Davis AP. Affinity Enhancement by Dendritic Side Chains in Synthetic Carbohydrate Receptors. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201409124] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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42
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Lange SC, Unsleber J, Drücker P, Galla HJ, Waller MP, Ravoo BJ. pH response and molecular recognition in a low molecular weight peptide hydrogel. Org Biomol Chem 2015; 13:561-9. [DOI: 10.1039/c4ob02069c] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
The preparation and characterization of a tripeptide based hydrogel, which possesses characteristic rheological properties, is pH responsive and can be functionalized at its thiol function is reported.
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Affiliation(s)
- Stefanie C. Lange
- Organic Chemistry Institute
- Westfälische Wilhelms-Universität Münster
- 48149 Münster
- Germany
| | - Jan Unsleber
- Organic Chemistry Institute
- Westfälische Wilhelms-Universität Münster
- 48149 Münster
- Germany
| | - Patrick Drücker
- Institute of Biochemistry
- Westfälische Wilhelms-Universität Münster
- 48149 Münster
- Germany
| | - Hans-Joachim Galla
- Institute of Biochemistry
- Westfälische Wilhelms-Universität Münster
- 48149 Münster
- Germany
| | - Mark P. Waller
- Organic Chemistry Institute
- Westfälische Wilhelms-Universität Münster
- 48149 Münster
- Germany
| | - Bart Jan Ravoo
- Organic Chemistry Institute
- Westfälische Wilhelms-Universität Münster
- 48149 Münster
- Germany
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43
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Jiang QQ, Sicking W, Ehlers M, Schmuck C. Discovery of potent inhibitors of human β-tryptase from pre-equilibrated dynamic combinatorial libraries. Chem Sci 2014; 6:1792-1800. [PMID: 29163876 PMCID: PMC5644118 DOI: 10.1039/c4sc02943g] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2014] [Accepted: 12/05/2014] [Indexed: 01/07/2023] Open
Abstract
Pre-equilibrated combinatorial libraries based on multivalent peptide acyl hydrazones were used to find potent inhibitors of β-tryptase. The best inhibitors bind to the protein surface, and inhibit β-tryptase with nanomolar affinity (Kica. 10 nM) and high selectivity in a reversible and non-competitive way.
Pre-equilibrated dynamic combinatorial libraries based on acyl hydrazone interchange of peptide-derived hydrazides and di- and tri-aldehydes have been used to discover potent inhibitors with nanomolar affinities for β-tryptase. To identify potent inhibitors the activity of the full library containing 95 members was compared with those of sub-libraries in which individual building blocks were missing. The most active library members contain a rigid central aromatic scaffold with three cationic peptide arms. The arms of the best inhibitors also contained a tailor-made GCP oxoanion binding motif attached to a lysine side chain. The most potent tri-armed hydrazones with peptide arms GKWR or GKWK(GCP) were shown to inhibit β-tryptase (Kica. 10–20 nM) reversibly, non-competitively and selectively (compared to related serine proteases, e.g. trypsin and chymotrypsin), most likely by binding to the protein surface, also in agreement with molecular modelling calculations. These new inhibitors are one order of magnitude more efficient than related tetravalent inhibitors obtained from previous work on a split-mix-combinatorial library and were identified with significantly less effort, demonstrating the usefulness of this approach for the identification of enzyme inhibitors in general.
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Affiliation(s)
- Qian-Qian Jiang
- Institut für Organische Chemie , Universität Duisburg-Essen , Universitätsstraße 7 , 45141 Essen , Germany .
| | - Wilhelm Sicking
- Institut für Organische Chemie , Universität Duisburg-Essen , Universitätsstraße 7 , 45141 Essen , Germany .
| | - Martin Ehlers
- Institut für Organische Chemie , Universität Duisburg-Essen , Universitätsstraße 7 , 45141 Essen , Germany .
| | - Carsten Schmuck
- Institut für Organische Chemie , Universität Duisburg-Essen , Universitätsstraße 7 , 45141 Essen , Germany .
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44
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Affinity ligands for glycoprotein purification based on the multi-component Ugi reaction. J Chromatogr B Analyt Technol Biomed Life Sci 2014; 969:171-80. [DOI: 10.1016/j.jchromb.2014.07.035] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2014] [Revised: 07/22/2014] [Accepted: 07/24/2014] [Indexed: 11/23/2022]
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45
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Rauschenberg M, Fritz EC, Schulz C, Kaufmann T, Ravoo BJ. Molecular recognition of surface-immobilized carbohydrates by a synthetic lectin. Beilstein J Org Chem 2014; 10:1354-64. [PMID: 24991289 PMCID: PMC4077543 DOI: 10.3762/bjoc.10.138] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2014] [Accepted: 05/22/2014] [Indexed: 12/23/2022] Open
Abstract
The molecular recognition of carbohydrates and proteins mediates a wide range of physiological processes and the development of synthetic carbohydrate receptors (“synthetic lectins”) constitutes a key advance in biomedical technology. In this article we report a synthetic lectin that selectively binds to carbohydrates immobilized in a molecular monolayer. Inspired by our previous work, we prepared a fluorescently labeled synthetic lectin consisting of a cyclic dimer of the tripeptide Cys-His-Cys, which forms spontaneously by air oxidation of the monomer. Amine-tethered derivatives of N-acetylneuraminic acid (NANA), β-D-galactose, β-D-glucose and α-D-mannose were microcontact printed on epoxide-terminated self-assembled monolayers. Successive prints resulted in simple microarrays of two carbohydrates. The selectivity of the synthetic lectin was investigated by incubation on the immobilized carbohydrates. Selective binding of the synthetic lectin to immobilized NANA and β-D-galactose was observed by fluorescence microscopy. The selectivity and affinity of the synthetic lectin was screened in competition experiments. In addition, the carbohydrate binding of the synthetic lectin was compared with the carbohydrate binding of the lectins concanavalin A and peanut agglutinin. It was found that the printed carbohydrates retain their characteristic selectivity towards the synthetic and natural lectins and that the recognition of synthetic and natural lectins is strictly orthogonal.
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Affiliation(s)
- Melanie Rauschenberg
- Organic Chemistry Institute, Westfälische Wilhelms-Universität Münster, Corrensstrasse 40, 48149 Münster, Germany
| | - Eva-Corrina Fritz
- Organic Chemistry Institute, Westfälische Wilhelms-Universität Münster, Corrensstrasse 40, 48149 Münster, Germany
| | - Christian Schulz
- Organic Chemistry Institute, Westfälische Wilhelms-Universität Münster, Corrensstrasse 40, 48149 Münster, Germany
| | - Tobias Kaufmann
- Organic Chemistry Institute, Westfälische Wilhelms-Universität Münster, Corrensstrasse 40, 48149 Münster, Germany
| | - Bart Jan Ravoo
- Organic Chemistry Institute, Westfälische Wilhelms-Universität Münster, Corrensstrasse 40, 48149 Münster, Germany
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46
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Takahashi M, Okada Y, Kitano Y, Chiba K. Phase-transfer-mediated electrochemical reaction: anodic disulfide bond formation under biphasic condition. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.04.116] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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47
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Zhang Y, Ramström O. Thiazolidinones derived from dynamic systemic resolution of complex reversible-reaction networks. Chemistry 2014; 20:3288-91. [PMID: 24677507 PMCID: PMC4497320 DOI: 10.1002/chem.201304690] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2013] [Indexed: 11/27/2022]
Abstract
A complex dynamic system based on a network of multiple reversible reactions has been established. The network was applied to a dynamic systemic resolution protocol based on kinetically controlled lipase-catalyzed transformations. This resulted in the formation of cyclized products, where two thiazolidinone compounds were efficiently produced from a range of potential transformations.
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Affiliation(s)
- Yan Zhang
- KTH Royal Institute of Technology, Department of ChemistryTeknikringen 30, 10044 Stockholm (Sweden)
| | - Olof Ramström
- KTH Royal Institute of Technology, Department of ChemistryTeknikringen 30, 10044 Stockholm (Sweden)
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48
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Zhang Y, Vongvilai P, Sakulsombat M, Fischer A, Ramström O. Asymmetric Synthesis of Substituted Thiolanes through Domino Thia-Michael-Henry Dynamic Covalent Systemic Resolution using Lipase Catalysis. Adv Synth Catal 2014; 356:987-992. [PMID: 26190961 PMCID: PMC4498465 DOI: 10.1002/adsc.201301033] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2013] [Revised: 01/15/2014] [Indexed: 12/12/2022]
Abstract
Dynamic systems based on consecutive thia-Michael and Henry reactions were generated and transformed using lipase-catalyzed asymmetric transformation. Substituted thiolane structures with three contiguous stereocenters were resolved in the process in high yields and high enantiomeric excesses.
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Affiliation(s)
- Yan Zhang
- Department of Chemistry, KTH Royal Institute of Technology Teknikringen 30, S-10044 Stockholm, Sweden E-mail:
| | - Pornrapee Vongvilai
- Department of Chemistry, KTH Royal Institute of Technology Teknikringen 30, S-10044 Stockholm, Sweden E-mail:
| | - Morakot Sakulsombat
- Department of Chemistry, KTH Royal Institute of Technology Teknikringen 30, S-10044 Stockholm, Sweden E-mail:
| | - Andreas Fischer
- Department of Chemistry, KTH Royal Institute of Technology Teknikringen 30, S-10044 Stockholm, Sweden E-mail:
| | - Olof Ramström
- Department of Chemistry, KTH Royal Institute of Technology Teknikringen 30, S-10044 Stockholm, Sweden E-mail:
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49
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Egawa Y, Miki R, Seki T. Colorimetric Sugar Sensing Using Boronic Acid-Substituted Azobenzenes. MATERIALS (BASEL, SWITZERLAND) 2014; 7:1201-1220. [PMID: 28788510 PMCID: PMC5453098 DOI: 10.3390/ma7021201] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2013] [Revised: 01/13/2014] [Accepted: 01/28/2014] [Indexed: 01/18/2023]
Abstract
In association with increasing diabetes prevalence, it is desirable to develop new glucose sensing systems with low cost, ease of use, high stability and good portability. Boronic acid is one of the potential candidates for a future alternative to enzyme-based glucose sensors. Boronic acid derivatives have been widely used for the sugar recognition motif, because boronic acids bind adjacent diols to form cyclic boronate esters. In order to develop colorimetric sugar sensors, boronic acid-conjugated azobenzenes have been synthesized. There are several types of boronic acid azobenzenes, and their characteristics tend to rely on the substitute position of the boronic acid moiety. For example, o-substitution of boronic acid to the azo group gives the advantage of a significant color change upon sugar addition. Nitrogen-15 Nuclear Magnetic Resonance (NMR) studies clearly show a signaling mechanism based on the formation and cleavage of the B-N dative bond between boronic acid and azo moieties in the dye. Some boronic acid-substituted azobenzenes were attached to a polymer or utilized for supramolecular chemistry to produce glucose-selective binding, in which two boronic acid moieties cooperatively bind one glucose molecule. In addition, boronic acid-substituted azobenzenes have been applied not only for glucose monitoring, but also for the sensing of glycated hemoglobin and dopamine.
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Affiliation(s)
- Yuya Egawa
- Faculty of Pharmaceutical Sciences, Josai University, Keyakidai, Sakado, Saitama 350-0295, Japan.
| | - Ryotaro Miki
- Faculty of Pharmaceutical Sciences, Josai University, Keyakidai, Sakado, Saitama 350-0295, Japan.
| | - Toshinobu Seki
- Faculty of Pharmaceutical Sciences, Josai University, Keyakidai, Sakado, Saitama 350-0295, Japan.
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50
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Rauschenberg M, Bandaru S, Waller MP, Ravoo BJ. Peptide-Based Carbohydrate Receptors. Chemistry 2014; 20:2770-82. [DOI: 10.1002/chem.201303777] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2013] [Indexed: 11/07/2022]
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