Competition between nitrate and nitrite reduction in denitrification byPseudomonas fluorescens

Partial denitrification in rope-type biofilm reactors: Performance, kinetics, and microflora using internal vs. external carbon sources

Stable nitrite accumulation through partial denitrification (PDN) represents an efficient pathway to support the anammox process, but limited studies explored the internal wastewater carbon sources and biofilm processes. This study assessed the viability of the PDN process, biofilm community evolution, and functional enzyme formation in rope-type biofilm media reactors using primary effluent (PE) and anaerobically pretreated wastewater carbon sources for the first time. Comparison was made with external carbon (acetate) under varied pH and biofilm thicknesses, maintaining a favourable sCOD: NO3-N ratio of 3. The wastewater's internal carbon resulted in thinner biofilms; nevertheless, modest nitrite accumulation (0.24 g/m2/d) occurred only at elevated pH. The highest nitrite accumulation (0.79 g/m2/d) was exhibited in the biofilm thickness-controlled acetate-fed reactor, featuring porous biofilms dominated by denitrifier Thauera (10.24 %) and imbalance between Nar, Nap, and Nir reductases. Using internal wastewater carbon sources offers a sustainable avenue for adopting the PDN process in full-scale application.

Comparing methanol and glycerol as carbon sources for mainstream partial denitrification/anammox in an IFAS process

This study explored the implementation of mainstream partial denitrification with anammox (PdNA) in the second anoxic zone of a wastewater treatment process in an integrated fixed film activated sludge (IFAS) configuration. A pilot study was conducted to compare the use of methanol and glycerol as external carbon sources for an IFAS PdNA startup, with a goal to optimize nitrogen removal while minimizing carbon usage. The study also investigated the establishment of anammox bacteria on virgin carriers in IFAS reactors without the use of seeding, and it is the first IFAS PdNA startup to use methanol as an external carbon source. The establishment of anammox bacteria was confirmed in both reactors 102 days after startup. Although the glycerol-fed reactor achieved a higher steady-state maximum ammonia removal rate because of anammox bacteria (1.6 ± 0.3 g/m2/day) in comparison with the methanol-fed reactor (1.2 ± 0.2 g/m2/day), both the glycerol- and methanol-fed reactors achieved similar average in situ ammonia removal rates of 0.39 ± 0.2 g/m2/day and 0.40 ± 0.2 g/m2/day, respectively. Additionally, when the upstream ammonia versus NOx (AvN) control system maintained an ideal ratio of 0.40-0.50 g/g, the methanol-fed reactor attained a lower average effluent TIN concentration (3.50 ± 1.2 mg/L) than the glycerol-fed reactor (4.43 ± 1.6 mg/L), which was prone to elevated nitrite concentrations in the effluent. Overall, this research highlights the potential for PdNA in IFAS configurations as an efficient and cost-saving method for wastewater treatment, with methanol as a viable carbon source for the establishment of anammox bacteria. PRACTITIONER POINTS: Methanol is an effective external carbon source for an anammox startup that avoids the need for costly alternative carbon sources. The methanol-fed reactor demonstrated higher TIN removal compared with the glycerol-fed reactor because of less overproduction of nitrite. Anammox bacteria was established in an IFAS reactor without seeding and used internally stored carbon to reduce external carbon addition. Controlling the influent ammonia versus NOx (AvN) ratio between 0.40 and 0.50 g/g allowed for low and stable TIN effluent conditions.

Recent advances of partial anammox by controlling nitrite supply in mainstream wastewater treatment through step-feed mode

At present, the step-feed process is a very active branch in practical application of mainstream wastewater treatment, and the anammox technology empowers the sustainable development and in-depth research of step-feed process. This review provides a systematically inspection of the realization and application of partial anammox process through step-feed mode, with a particular focus on controlling nitrite supply for anammox. The characteristics and advantages of step-feed mode in traditional management are reviewed. The unique organics utilization strategy by step-feed and indispensable intermittent aeration mode creates advantages for achieving nitritation (NH4+ → NO2-) and denitratation (NO3- → NO2-), providing flexible combination possibility with anammox. Additionally, the lab- or pilot-scale control strategies with different forms of anammox, including nitritation/anammox, denitratation/anammox, and double-anammox (combined nitritation/anammox and denitratation/anammox), are summarized. Finally, future directions and application perspectives on leveraging the relationship between flocs and biofilm, nitritation and denitratation, and different strains to maximize the anammox proportion in N-removal are proposed.

Genome-Resolved Metagenomics and Denitrifying Strain Isolation Reveal New Insights into Microbial Denitrification in the Deep Vadose Zone

The heavy use of nitrogen fertilizer in intensive agricultural areas often leads to nitrate accumulation in subsurface soil and nitrate contamination in groundwater, which poses a serious risk to public health. Denitrifying microorganisms in the subsoil convert nitrate to gaseous forms of nitrogen, thereby mitigating the leaching of nitrate into groundwater. Here, we investigated denitrifying microorganisms in the deep vadose zone of a typical intensive agricultural area in China through microcosm enrichment, genome-resolved metagenomic analysis, and denitrifying bacteria isolation. A total of 1000 metagenome-assembled genomes (MAGs) were reconstructed, resulting in 98 high-quality, dereplicated MAGs that contained denitrification genes. Among them, 32 MAGs could not be taxonomically classified at the genus or species level, indicating that a broader spectrum of taxonomic groups is involved in subsoil denitrification than previously recognized. A denitrifier isolate library was constructed by using a strategy combining high-throughput and conventional cultivation techniques. Assessment of the denitrification characteristics of both the MAGs and isolates demonstrated the dominance of truncated denitrification. Functional screening revealed the highest denitrification activity in two complete denitrifiers belonging to the genus Pseudomonas. These findings greatly expand the current knowledge of the composition and function of denitrifying microorganisms in subsoils. The constructed isolate library provided the first pool of subsoil-denitrifying microorganisms that could facilitate the development of microbe-based technologies for nitrate attenuation in groundwater.

Simultaneous nitrate and phosphorus removal in novel steel slag biofilters: Optimization and mechanism study

The simultaneous nitrate (NO3--N) and phosphorus (P) removal systems are considered to be an effective wastewater treatment technology. However, so far, there are few studies on system optimization to improve NO3--N and P removal. In this study, nine simultaneous NO3--N and P removal biofilters (SNPBs) were constructed to treat simulated wastewater. In order to optimize the NO3--N and P removal, different material loading positions were set: (1) red soil, steel slag, and rice straw (RSR), (2) steel slag, red soil, and rice straw (SRR), and (3) red soil, rice straw, and steel slag (RRS). Results showed that the above three treatments had mean removal efficiencies of 58%-91% for NO3--N and 55%-81% for TP, with the best N and P removal occurring in the SRR. The TN mass balance indicated that microbial removal was responsible for 78.2% of the influent TN in the SRR biofilter. The key microorganisms were Enterobacter, Klebsiella, Pseudomonas, Diaphorobacter, and unclassified_f_Enterobacteriaceae, which accounted for 61.9% of the total microorganisms. The main P-removal mechanism was the formation of Al-P, Fe-P, and Ca-P in red soil or steel slag layer. In addition, the decrease of SRR effluent pH from 11.86 in 1-7 days to 7.75 in 8-50 days indicated that red soil and rice straw had a synergistic effect on water pH reduction. These results suggest that a reasonable combination of steel slag with red soil and rice straw not only simultaneously removes NO3--N and P but also additionally solves the problem of high pH caused by steel slag.

Efficient nitrite accumulation in partial sulfide autotrophic denitrification (PSAD) system: insights of S/N ratio, pH and temperature

To provide the necessary nitrite for the Anaerobic Ammonium Oxidation (ANAMMOX) process, the effect of nitrite accumulation in the partial sulfide autotrophic denitrification (PSAD) process was investigated using an SBR reactor. The results revealed that the effectiveness of nitrate removal was unsatisfactory when the S/N ratio (mol/mol) fell below 0.6. The optimal conditions for nitrate removal and nitrite accumulation were achieved within the S/N ratio range of 0.7-0.8, resulting in an average Nitrate Removal Efficiency (NRE) of 95.84%±4.89% and a Nitrite Accumulation Rate (NAR) of 75.31%±6.61%, respectively. It was observed that the nitrate reduction rate was three times faster than that of nitrite reduction during a typical cycle test. Furthermore, batch tests were conducted to assess the influence of pH and temperature conditions. In the pH tests, it became evident that the PSAD process performed more effectively in alkaline environment. The highest levels of nitrate removal and nitrite accumulation were achieved at an initial pH of 8.5, resulting in a NRE of 98.30%±1.93% and a NAR of 85.83%±0.47%, respectively. In the temperature tests, the most favourable outcomes for nitrate removal and nitrite accumulation were observed at 22±1 ℃, with a NRE of 100.00% and a NAR of 81.03%±1.64%, respectively. Moreover, a comparative analysis of 16S rRNA sequencing results between the raw sludge and the sulfide-enriched culture sludge sample showed that Proteobacteria (49.51%) remained the dominant phylum, with Thiobacillus (24.72%), Prosthecobacter (2.55%), Brevundimonas (2.31%) and Ignavibacterium (2.04%) emerging as the dominant genera, assuming the good nitrogen performance of the system.

The effect of organic sources on the electron distribution and N2O emission in sulfur-driven autotrophic denitrification biofilters

Sulfur-driven autotrophic denitrification (SAD) is considered as an effective alternative to traditional heterotrophic denitrification (HD) due to its cheap, low sludge production and non-toxicity. Nitrous oxide (N2O) as an intermediate product inevitably was generated at the limited supply of electron donor or unbalanced electron distribution condition during the denitrification process. Recently, autotrophic denitrification biofilters were conclusively implemented for advanced nitrogen removal in wastewater treatment plant (WWTP). However, residual organic sources after wastewater treatment could affect the electron distribution among denitrifying reductases and few studies are known about this issue. In this study, several lab-scale biofilters packed with elemental sulfur slices were applied to explore the electron distribution characteristics of autotrophic denitrification through the combination of different nitrogen oxides (NOx). The results clearly delineated that the different combination of nitrogen oxides had a remarkable effect on the electron distribution. In any case, the electrons likely flow toward nitrate reductase (Nar) under a single nitrogen oxide combination, followed by nitrite reductase (Nir) and nitrous oxide reductase (Nos). The concurrent presence of multiple electron acceptors resulted in most electrons flowing toward Nar, and least toward Nos. Compared to traditional SAD, the reduction rate of nitrogen oxide in the sulfur-driven autotrophic denitrification with influent of organic source (OSAD) was greatly improved. The maximum value of the true specific rates of NO3- in OSAD process was 9.43 mg-N/g-VSS/h. It was increased by 8.26 folds higher than that in traditional SAD. The electrons were more easily distributed to Nos with the addition of sodium acetate, which further promoted the N2O reduction. This study will provide theoretical support for controlling N2O release in SAD biofilters.

Enrichment and characterization of a nitric oxide-reducing microbial community in a continuous bioreactor

Nitric oxide (NO) is a highly reactive and climate-active molecule and a key intermediate in the microbial nitrogen cycle. Despite its role in the evolution of denitrification and aerobic respiration, high redox potential and capacity to sustain microbial growth, our understanding of NO-reducing microorganisms remains limited due to the absence of NO-reducing microbial cultures obtained directly from the environment using NO as a substrate. Here, using a continuous bioreactor and a constant supply of NO as the sole electron acceptor, we enriched and characterized a microbial community dominated by two previously unknown microorganisms that grow at nanomolar NO concentrations and survive high amounts (>6 µM) of this toxic gas, reducing it to N2 with little to non-detectable production of the greenhouse gas nitrous oxide. These results provide insight into the physiology of NO-reducing microorganisms, which have pivotal roles in the control of climate-active gases, waste removal, and evolution of nitrate and oxygen respiration.

Decryption for nitrogen removal in Anammox-based coupled systems: Nitrite-induced mechanisms

This study investigated the effects of NO₂^- on synergetic interactions between Anammox bacteria (AnAOB) and sulfur-oxidizing bacteria (SOB) in an autotrophic denitrification-Anammox system. The presence of NO₂^- (0-75 mg-N/L) was shown to significantly enhance NH₄⁺ and NO₃^- conversion rates, achieving intensified synergy between AnAOB and SOB. However, once NO₂^- exceed a threshold concentration (100 mg-N/L), both NH₄⁺ and NO₃^- conversion rates decreased with increased NO₂^- consumption via autotrophic denitrification. The cooperation between AnAOB and SOB was decoupled due to the NO₂^- inhibition. Improved system reliability and nitrogen removal performance was achieved in a long-term reactor operation with NO₂^- in the influent; reverse transcription-quantitative polymerase chain reaction analysis showed elevated hydrazine synthase gene transcription levels (5.00-fold), comparing to these in the reactor without NO₂^-. This study elucidated the mechanism of NO₂^- induced synergetic interactions between AnAOB and SOB, providing theoretical guidance for engineering applications of Anammox-based coupled systems.

pH-Dependent Hydrogenotrophic Denitratation Based on Self-Alkalization

Producing stable nitrite is a necessity for anaerobic ammonium oxidation (anammox) but remains a huge challenge. Here, we describe the design and operation of a hydrogenotrophic denitratation system that stably reduced >90% nitrate to nitrite under self-alkaline conditions of pH up to 10.80. Manually lowering the pH to a range of 9.00-10.00 dramatically decreased the nitrate-to-nitrite transformation ratio to <20%, showing a significant role of high pH in denitratation. Metagenomics combined with metatranscriptomics indicated that six microorganisms, including a Thauera member, dominated the community and encoded the various genes responsible for hydrogen oxidation and the complete denitrification process. During denitratation at high pH, transcription of periplasmic genes napA, nirS, and nirK, whose products perform nitrate and nitrite reduction, decreased sharply compared to that under neutral conditions, while narG, encoding a membrane-associated nitrate reductase, remained transcriptionally active, as were genes involved in intracellular proton homeostasis. Together with no reduction in only nitrite-amended samples, these results disproved the electron competition between reductions of nitrate and nitrite but highlighted a lack of protons outside cells constraining biological nitrite reduction. Overall, our study presents a stably efficient strategy for nitrite production and provides a major advance in the understanding of denitratation.

Simultaneous removal of nitrate, nitrobenzene and aniline from groundwater in a vertical baffled biofilm reactor

The challenge of simultaneous removal of nitrobenzene (NB), aniline (AN) and nitrate from groundwater in a single bioreactor is mainly attributed to the persistence of AN to degradation with anoxic denitrification conditions. In this work, simultaneous removal of NB (100 μM), AN (100 μM) and nitrate (1 mM) was achieved within 8 h with a COD/N ratio of 8 in a vertical baffled biofilm reactor (VBBR). By setting DO concentration at 0.4-0.5 mg L^-1 to create a micro-aerobic condition, NB removal rate was accelerated without accumulation of AN, and AN could serve as electron donors for denitrification after ring cleavage. High-throughput sequencing showed that biofilm was predominated by denitrifiers (Luteimonas, Planctomyces, Thiobacillus, Thauera and so on) and NB-degrading bacteria (Pseudomonas), and biodiversity varied vertically along the height of the reactor. A dominantly anaerobic pathway for reducing NB to AN was identified by PICRUSt analysis, as the predicted genes involved in aerobic transformation of NB were several magnitudes lower than those in the anaerobic pathway. This study provided a new insight to the role of oxygen in robust bioremediation groundwater contaminated with NB, AN and nitrate.

Reclaimed Water Reuse for Groundwater Recharge: A Review of Hot Spots and Hot Moments in the Hyporheic Zone

As an alternative resource, reclaimed water is rich in the various nutrients and organic matter that may irreparably endanger groundwater quality through the recharging process. During groundwater recharge with reclaimed water, hot spots and hot moments (HSHMs) in the hyporheic zones, located at the groundwater–reclaimed water interface, play vital roles in cycling and processing energy, carbon, and nutrients, drawing increasing concern in the fields of biogeochemistry, environmental chemistry, and pollution treatment and prevention engineering. This paper aims to review these recent advances and the current state of knowledge of HSHMs in the hyporheic zone with regard to groundwater recharge using reclaimed water, including the generation mechanisms, temporal and spatial characteristics, influencing factors, and identification indicators and methods of HSHMs in the materials cycle. Finally, the development prospects of HSHMs are discussed. It is hoped that this review will lead to a clearer understanding of the processes controlling water flow and pollutant flux, and that further management and control of HSHMs can be achieved, resulting in the development of a more accurate and safer approach to groundwater recharge with reclaimed water.

Gaseous NO2 induces various envelope alterations in Pseudomonas fluorescens MFAF76a

Anthropogenic atmospheric pollution and immune response regularly expose bacteria to toxic nitrogen oxides such as NO^• and NO₂. These reactive molecules can damage a wide variety of biomolecules such as DNA, proteins and lipids. Several components of the bacterial envelope are susceptible to be damaged by reactive nitrogen species. Furthermore, the hydrophobic core of the membranes favors the reactivity of nitrogen oxides with other molecules, making membranes an important factor in the chemistry of nitrosative stress. Since bacteria are often exposed to endogenous or exogenous nitrogen oxides, they have acquired protection mechanisms against the deleterious effects of these molecules. By exposing bacteria to gaseous NO₂, this work aims to analyze the physiological effects of NO₂ on the cell envelope of the airborne bacterium Pseudomonas fluorescens MFAF76a and its potential adaptive responses. Electron microscopy showed that exposure to NO₂ leads to morphological alterations of the cell envelope. Furthermore, the proteomic profiling data revealed that these cell envelope alterations might be partly explained by modifications of the synthesis pathways of multiple cell envelope components, such as peptidoglycan, lipid A, and phospholipids. Together these results provide important insights into the potential adaptive responses to NO₂ exposure in P. fluorescens MFAF76a needing further investigations.

Partial denitrification-anammox (PdNA) application in mainstream IFAS configuration using raw fermentate as carbon source

This research examined the feasibility of raw fermentate for mainstream partial denitrification-anammox (PdNA) in a pre-anoxic integrated fixed-film activated sludge (IFAS) process. Fermentate quality sampled from a full-scale facility was highly dynamic, with 360-940 mg VFA-COD/L and VFA/soluble COD ratios ranging from 24% to 48%. This study showed that PdNA selection could be achieved even when using low quality fermentate. Nitrate residual was identified as the main factor driving the PdN efficiency, while management of nitrate conversion rates was required to maximize overall PdNA rates. AnAOB limitation was never observed in the IFAS system. Overall, this study showed PdN efficiencies up to 38% and PdNA rates up to 1.2 ± 0.7 g TIN/m² /d with further potential for improvements. As a result of both PdNA and full denitrification, this concept showed the potential to save 48-89% methanol and decrease the carbon footprint of water resource recovery facilities (WRRF) by 9-15%. PRACTITIONER POINTS: Application of PdNA with variable quality fermentate is feasible when the nitrate residual concentration is increased to enhance PdN selection. To maximize nitrogen removed through PdNA, nitrate conversion rates need enhancement through optimization of upstream aeration and PdN control setpoints. The IFAS PdNA process was never anammox limited; success depended on the degree of PdN achieved to make nitrite available. Application of PdNA with fermentate can yield 48-89% savings in methanol or other carbon compared with conventional nitrification and denitrification. Integrating PdNA upstream from polishing aeration and anoxic zones guarantees that stringent limits can be met (<5 mg N/L).

Modeling of sulfur-driven autotrophic denitrification coupled with Anammox process

While sulfur-driven autotrophic denitrification (SDAD) occurring in the anoxic reactor of the sulfate reduction, autotrophic denitrification and nitrification integrated (SANI) system has been regarded as the main nitrogen removal bioprocess, little is known about the accompanying Anammox bacteria whose presence is made possible by the co-existence of NH₄⁺ and NO₂^-. Therefore, this work firstly developed an integrated SDAD-Anammox model to describe the interactions between sulfur-oxidizing bacteria and Anammox bacteria. The model was subsequently used to explore the impacts of influent conditions on the reactor performance and microbial community structure of the anoxic reactor. The results revealed that at a relatively low ratio of <1.5 mg S/mg N, Anammox bacteria could survive and even take a dominant position (up to 58.9%). Finally, a modified SANI system configuration based on the effective collaboration between SDAD and Anammox processes was proposed to improve the efficiency of the treatment of sulfate-rich saline sewage.

Enrichment of a denitratating microbial community through kinetic limitation

Denitratation, or the intentionally engineered accumulation of nitrite (NO₂^-) from selective reduction of nitrate (NO₃^-), can be combined with downstream anammox to reduce chemical and energy use associated with conventional nitrification and denitrification. This study aimed to enrich a denitratating microbial community capable of significant NO₂^- accumulation by applying added kinetic limitation to an already stoichiometrically-limited, glycerol-driven denitratation process. Operation at solids residence time, SRT=3.0 d, resulted in optimal denitratation performance and a microbial community dominated by NO₃^--respirers, noted by one order of magnitude lower total copy numbers of nirS and nirK gene transcripts compared to longer SRTs. Selective NO₃^- reduction to NO₂^- was achieved at all SRTs although longer SRTs (less kinetic limitation) supported microbial communities more capable of full denitrification as described by a lower NO₂^- accumulation ratio (NAR=42±5%) and higher steady-state nitrous oxide (1.5 mg/L N₂O-N) accumulation. Shorter SRTs (more kinetic limitation) led to higher observed yields (Y=0.63 mg-COD/mg-COD) with more electrons dedicated for cell synthesis (f_s=0.56±0.10), which potentially contributed to the accumulation of NO₃^-. Enrichment of a denitratating-dominant microbial community by optimizing kinetic limitation operating parameters could support significant NO₂^- accumulation and reduce chemical and energy use for biological nitrogen removal when combined with downstream anammox.

Applicability of two-stage anoxic/oxic shortcut nitrogen removal via partial nitrification and partial denitrification for municipal wastewater by adding sludge fermentation products continuously

Partial nitrification and partial denitrification combined with anammox is a promising process for sewage treatment. In this study, real municipal wastewater was treated in a continuous two-stage anoxic/oxic (A/O) reactor. External mixed sludge fermentation products were added in the anoxic zone, simultaneously achieving partial nitrification and partial denitrification and achieving a high and relatively stable accumulation of nitrite. The maximum accumulation rates of NO₂^--N in A1.2 and A2.1-A2.4 zones of the reactor reached 70% and 61%-37%, respectively, which improved denitrification efficiency and created conditions that supported the coupling of subsequent anammox. The influent nitrogen load of the system was 0.078 kg/(m³•d), and the mean influent and effluent total nitrogen were 51 and 12 mg/L, respectively. The mean total nitrogen removal rate reached 76%. Further analysis revealed that Hyphomicrobium (incomplete denitrifiers) and Nitrosomonas (ammonia oxidizing bacteria) were enriched, which may have facilitated the high nitrite accumulation. Moreover, the batch test showed that adding sludge fermentation during denitrification significantly suppressed nitrite reduction, resulting in the nitrite accumulation.

Ratio of Electron Donor to Acceptor Influences Metabolic Specialization and Denitrification Dynamics in Pseudomonas aeruginosa in a Mixed Carbon Medium

Denitrifying microbes sequentially reduce nitrate (NO3 -) to nitrite (NO2 -), NO, N2O, and N2 through enzymes encoded by nar, nir, nor, and nos. Some denitrifiers maintain the whole four-gene pathway, but others possess partial pathways. Partial denitrifiers may evolve through metabolic specialization whereas complete denitrifiers may adapt toward greater metabolic flexibility in nitrogen oxide (NOx -) utilization. Both exist within natural environments, but we lack an understanding of selective pressures driving the evolution toward each lifestyle. Here we investigate differences in growth rate, growth yield, denitrification dynamics, and the extent of intermediate metabolite accumulation under varying nutrient conditions between the model complete denitrifier Pseudomonas aeruginosa and a community of engineered specialists with deletions in the denitrification genes nar or nir. Our results in a mixed carbon medium indicate a growth rate vs. yield tradeoff between complete and partial denitrifiers, which varies with total nutrient availability and ratios of organic carbon to NOx -. We found that the cultures of both complete and partial denitrifiers accumulated nitrite and that the metabolic lifestyle coupled with nutrient conditions are responsible for the extent of nitrite accumulation.

Elemental sulfur as electron donor and/or acceptor: Mechanisms, applications and perspectives for biological water and wastewater treatment

Biochemical oxidation and reduction are the principle of biological water and wastewater treatment, in which electron donor and/or acceptor shall be provided. Elemental sulfur (S⁰) as a non-toxic and easily available material with low price, possesses both reductive and oxidative characteristics, suggesting that it is a suitable material for water and wastewater treatment. Recent advanced understanding of S⁰-respiring microorganisms and their metabolism further stimulated the development of S⁰-based technologies. As such, S⁰-based biotechnologies have emerged as cost-effective and attractive alternatives to conventional biological methods for water and wastewater treatment. For instance, S⁰-driven autotrophic denitrification substantially lower the operational cost for nitrogen removal from water and wastewater, compared to the conventional process with exogenous carbon source supplementation. The introduction of S⁰ can also avoid secondary pollution commonly caused by overdose of organic carbon. S⁰ reduction processes cost-effectively mineralize organic matter with low sludge production. Biological sulfide production using S⁰ as electron acceptor is also an attractive technology for metal-laden wastewater treatment, e.g. acid mine drainage. This paper outlines an overview of the fundamentals, characteristics and advances of the S⁰-based biotechnologies and highlights the functional S⁰-related microorganisms. In particular, the mechanisms of microorganisms accessing insoluble S⁰ and feasibility to improve S⁰ bio-utilization efficiency are critically discussed. Additionally, the research knowledge gaps, current process limitations, and required further developments are identified and discussed.

Primary sludge fermentate as carbon source for mainstream partial denitrification-anammox (PdNA)

Primary sludge fermentate, a concentrated hydrolyzed wastewater carbon, was evaluated for use as an alternative carbon source for mainstream partial denitrification-anammox (PdNA) in a suspended growth activated sludge process in terms of partial denitrification (PdN) efficiency, PdNA nitrogen removal contributions, and final effluent quality. Fermenter operation at a 2-day sludge retention time (SRT) resulted in the maximum achievable yield of 0.14 ± 0.05 g sCOD/g VSS without release of excessive ammonia and phosphorus to the system. Based on the results of batch experiments, fermentate addition led to PdN efficiency of 93 ± 14%, which was similar to acetate at a nitrate residual of 2-3 mg N/L. In the pilot-scale mainstream deammonification reactor, PdN efficiency using fermentate was 49 ± 24%, which was lower than acetate (66 ± 24% during acetate period I and 70 ± 21% during acetate period II), most probably due to lower nitrate and ammonium kinetics in the PdN zone. Methanol cost-saving potential for the application of PdNA as the main short-cut nitrogen pathway was estimated to be 30% to 55% depending on the PdN efficiency achieved. PRACTITIONER POINTS: Primary sludge fermentate was evaluated as an alternative carbon source for mainstream partial denitrification-anammox (PdNA). Fermenter operated at a 1 to 2 day SRT resulted in the maximum achievable yield without the release of excessive ammonia and phosphorus to the system. Although 93% partial denitrification efficiency was achieved with fermentate in batch experiments, around 49% PdN efficiency was achieved in pilot studies. Application of PdNA with fermentate can result in significant methanol cost savings.

Development of a kinetic model to evaluate thiosulfate-driven denitrification and anammox (TDDA) process

Recently, the integration of sulfur-driven denitrification and anammox process has been extensively studied as a promising alternative nitrogen removal technology. Most of these studies investigated the process feasibility and monitored the community dynamics. However, an in-depth understanding of this new sulfur-nitrogen cycle bioprocess based on mathematical modeling and elucidation of complex interactions among different microorganisms has not yet been achieved. To fill this gap, we developed a kinetic model (with 7 bioprocesses, 12 variables, and 19 parameters) to assess the sulfur(thiosulfate)-driven denitrification and anammox (TDDA) process in a single reactor. The parameters used in this process were separately estimated by fitting the data obtained from the experiments. Then, the model was further validated under different conditions, and the results demonstrated that the developed model could describe the dynamic behaviors of nitrogen and sulfur conversions in the TDDA system. The newly developed branched thiosulfate oxidation model was also verified by conducting a metagenomics analysis. Using the developed model, we i) examined the interactions between sulfur-oxidizing bacteria and anammox bacteria at steady-state conditions with varying substrates to demonstrate the reliability of TDDA, and ii) evaluated the feasibility and operation of the TDDA process in terms of practical implementation. Our results will benefit further exploration of the significance of this novel S-N cycle bioprocess and guide its future applications.

Denitrification Biokinetics: Towards Optimization for Industrial Applications

Denitrification is a microbial process that converts nitrate (NO₃^–) to N₂ and can play an important role in industrial applications such as souring control and microbially enhanced oil recovery (MEOR). The effectiveness of using NO₃^– in souring control depends on the partial reduction of NO₃^– to nitrite (NO₂^–) and/or N₂O while in MEOR complete reduction of NO₃^– to N₂ is desired. Thauera has been reported as a dominant taxon in such applications, but the impact of NO₃^– and NO₂^– concentrations, and pH on the kinetics of denitrification by this bacterium is not known. With the goal of better understanding the effects of such parameters on applications such as souring and MEOR, three strains of Thauera (K172, NS1 and TK001) were used to study denitrification kinetics when using acetate as an electron donor. At low initial NO₃^– concentrations (∼1 mmol L^–1) and at pH 7.5, complete NO₃^– reduction by all strains was indicated by non-detectable NO₃^– concentrations and near-complete recovery (> 97%) of the initial NO₃-N as N₂ after 14 days of incubation. The relative rate of denitrification by NS1 was low, 0.071 mmol L^–1 d^–1, compared to that of K172 (0.431 mmol L^–1 d^–1) and TK001 (0.429 mmol L^–1 d^–1). Transient accumulation of up to 0.74 mmol L^–1 NO₂^– was observed in cultures of NS1 only. Increased initial NO₃^– concentrations resulted in the accumulation of elevated concentrations of NO₂^– and N₂O, particularly in incubations with K172 and NS1. Strain TK001 had the most extensive NO₃^– reduction under high initial NO₃^– concentrations, but still had only ∼78% of the initial NO₃-N recovered as N₂ after 90 days of incubation. As denitrification proceeded, increased pH substantially reduced denitrification rates when values exceeded ∼ 9. The rate and extent of NO₃^– reduction were also affected by NO₂^– accumulation, particularly in incubations with K172, where up to more than a 2-fold rate decrease was observed. The decrease in rate was associated with decreased transcript abundances of denitrification genes (nirS and nosZ) required to produce enzymes for reduction of NO₂^– and N₂O. Conversely, high pH also contributed to the delayed expression of these gene transcripts rather than their abundances in strains NS1 and TK001. Increased NO₂^– concentrations, N₂O levels and high pH appeared to cause higher stress on NS1 than on K172 and TK001 for N₂ production. Collectively, these results indicate that increased pH can alter the kinetics of denitrification by Thauera strains used in this study, suggesting that liming could be a way to achieve partial denitrification to promote NO₂^– and N₂O production (e.g., for souring control) while pH buffering would be desirable for achieving complete denitrification to N₂ (e.g., for gas-mediated MEOR).

Spatial organization in microbial range expansion emerges from trophic dependencies and successful lineages

Evidence suggests that bacterial community spatial organization affects their ecological function, yet details of the mechanisms that promote spatial patterns remain difficult to resolve experimentally. In contrast to bacterial communities in liquid cultures, surface-attached range expansion fosters genetic segregation of the growing population with preferential access to nutrients and reduced mechanical restrictions for cells at the expanding periphery. Here we elucidate how localized conditions in cross-feeding bacterial communities shape community spatial organization. We combine experiments with an individual based mathematical model to resolve how trophic dependencies affect localized growth rates and nucleate successful cell lineages. The model tracks individual cell lineages and attributes these with trophic dependencies that promote counterintuitive reproductive advantages and result in lasting influences on the community structure, and potentially, on its functioning. We examine persistence of lucky lineages in structured habitats where expansion is interrupted by physical obstacles to gain insights into patterns in porous domains.

Recent advances in controlling denitritation for achieving denitratation/anammox in mainstream wastewater treatment plants

Denitratation (NO₃^-→NO₂^-)/anammox is a promising method for anammox application in mainstream wastewater treatment plants (WWTPs) to reduce oxygen and organic matter consumption. Achieving nitrite production via denitratation and controlling denitritation (NO₂^-→N₂) is the basis of the denitratation/anammox process. To control denitritation, the denitrifying biocommunity and growth rate are critically reviewed for biocommunity optimization. Then, the short-term and long-term effects of pH on denitritation were summarized and the possible mechanism was discussed, along with the effect of C/N ratio and organic matter type on denitritation. Meanwhile, the strategies for producing nitrite via controlling denitritation are discussed, as well as the processes for achieving nitrogen removal via denitratation/anammox in WWTPs. Finally, the practical application of denitratation/anammox in a full-scale mainstream WWTP is documented.

Comparison of different media for the detection of denitrifying and nitrate reducing bacteria in mesotrophic aquatic environments by the most probable number method

The cultivation based characterization of microbial communities and the quantification of certain functional bacterial groups is still an essential part of microbiology and microbial ecology. For plate count methods meanwhile low strength media are recommended, since they cover a broader range of different species and result in higher counts compared to established high strength media. For liquid media, as they are used for most probable number (MPN) quantifications, comparisons between high and low strength media are rare. In this study we compare the performance of different high and low strength media for the MPN quantification of nitrate reducing and denitrifying bacteria in two different fresh water environments. We also calculated the cell specific turnover rates of several denitrifying cultures previously enriched in high and low strength media from three different fresh water environments and a waste water treatment plant. For fresh water samples, our results indicate that high strength media detect higher MPN of denitrifying bacteria and in equal MPN of nitrate reducing bacteria compared to low strength media, which is in contrary to plate count techniques. For sediment samples, high and low strength media performed equal. The cell specific turnover rate was independent from the enrichment media and the media of the performance test. The cause of the lower denitrifyer MPN in low strength media remains, however, unclear. The results are important for further MPN quantifications of bacteria in nutrient poor environments and for calculations of nitrogen turnover rates by kinetical models using the number of metabolic active cells as one parameter.

Nitrate residual as a key parameter to efficiently control partial denitrification coupling with anammox

Despite the increased research efforts, full-scale implementation of shortcut nitrogen removal strategies has been challenged by the lack of consistent nitrite-oxidizing bacteria out-selection. This paper proposes an alternative path using partial denitrification (PdN) selection coupled with anaerobic ammonium-oxidizing bacteria (AnAOB). A nitrate residual concentration (>2 mg N/L) was identified as the crucial factor for metabolic PdN selection using acetate as a carbon source, unlike the COD/N ratio which was often suggested. Therefore, a novel and simple acetate dosing control strategy based on maintaining a nitrate concentration was tested in the absence and presence of AnAOB, achieving PdN efficiencies above 80%. The metabolic-based PdN selection allowed for flexibility to move between PdN and full denitrification when required to meet effluent nitrate levels. Due to the independence of this strategy on species selection and management of nitrite competition, this novel approach will guarantee nitrite availability for AnAOB under mainstream conditions unlike shortcut nitrogen removal approaches based on NOB out-selection. Overall, a COD addition of only 2.2 g COD/g TIN removed was needed for the PdN-AnAOB concept showing its potential for significant savings in external carbon source needs to meet low TIN effluent concentrations making this concept a competitive alternative. PRACTITIONER POINTS: Nitrate residual is the key control parameter for partial denitrification selection. Metabolic selection allowed for flexibility of moving from partial to full denitrification. 2.2 g COD/g TIN removed was needed for partial denitrification-anammox process.

Coupling of sulfur(thiosulfate)-driven denitratation and anammox process to treat nitrate and ammonium contained wastewater

This study investigated the feasibility of a new biological nitrogen removal process that integrates sulfur-driven autotrophic denitratation (NO₃^-→NO₂^-) and anaerobic ammonium oxidation (Anammox) for simultaneous removal of nitrate and ammonium from industrial wastewater. The proposed sulfur(thiosulfate)-driven denitratation and Anammox process was developed in two phases: First, the thiosulfate-driven denitratation was established in the UASB inoculated with activated sludge and fed with ammonium, nitrate and thiosulfate for 52 days until the nitrite level in the effluent reached 32.1 mg N/L. Second, enriched Anammox biomass was introduced to the UASB to develop the integrated thiosulfate-driven denitratation and Anammox (TDDA) bioprocess (53-212 d). Results showed that nitrate and ammonium could be efficiently removed from synthetic wastewater by the integrated TDDA system at a total nitrogen (TN) removal efficiency of 82.5 ± 1.8% with an influent NH₄⁺-N of 101.2 ± 2.2 mgN/L, NO₃^--N of 101.1 ± 1.5 mgN/L and thiosulfate of 202.5 ± 3.2 mg S/L. It was estimated that Anammox and autotrophic denitritation (NO₂^-→N₂) contributed to about 90% and 10% of the TN removal respectively at stable operation. The established TDDA system was further supported by high-throughput sequencing analysis that sulfur-oxidizing bacteria (e.g., Thiobacillus and Sulfurimonas) coexisted with Anammox bacteria (e.g., Ca. Kuenenia and Ca. Anammoxoglobus) in this syntrophic biocenosis. Additionally, batch experiments were conducted to reveal the kinetic rates and to reconcile the stoichiometry of the electron donor/acceptor couples of the TDDA process. The results unraveled the mechanisms in the new bioprocess: i) sulfite and elemental sulfur (S⁰) were initially generated from branched thiosulfate; ii) oxidation of sulfite and elemental sulfur coupled with fast and slow denitratation; iii) nitrite produced from denitratation together with ammonium were effectively converted to dinitrogen gas via Anammox.

Achieving partial denitrification using carbon sources in domestic wastewater with waste-activated sludge as inoculum

Partial denitrification (PD, nitrate → nitrite) using carbon sources in domestic wastewater with waste-activated sludge as inoculum was firstly achieved in this study. Through controlling influent pH at about 9.0 and anoxic reaction time of 1 h in the start-up, the nitrite (NO₂^--N) production reached as high as 25.2 mg/L, with influent nitrate (NO₃^--N) of about 30 mg/L and chemical oxygen demand (COD) to NO₃^--N ratio of 5.9. Furthermore, PD performance remained stable without pH control during subsequent operations. Efficient NO₂^--N production was closely related to the consumed amount of readily biodegradable COD (Ss) fraction, with optimal Ss/NO₃^--N ratio of about 3.5. Thauera (19.1%), norank_f__Xanthomonadaceae (5.2%), and Thiobacillus (5.0%) were enriched during the 208-day operation, which may be responsible for high NO₂^--N production. These findings provided a novel strategy for promoting mainstream PD/Anammox application, without additional nitrite-accumulating denitrifying sludge and external carbon sources.

Field tests of cubic-meter scale microbial electrochemical system in a municipal wastewater treatment plant

A pilot microbial electrochemical system (MES) system with a total volume of 1.5 m³ was developed and operated outdoor in a municipal wastewater treatment plant (WWTP). Microbial separator based on the dynamic biofilm on low-cost porous matrix was applied to replace ion exchange membranes (IEMs), while the separate plug-in module architecture allowed the totally 336 pairs of MES units and 14 separator modules to be integrated into one wastewater tank. The separator layer equally divided the wastewater tank into 7 cathodic and 8 anodic compartments. Fed with primary sedimentation tank effluent of WWTP, the pilot MES achieved stable removal efficiency for chemical oxygen demand (91 ± 3%), total nitrogen (64 ± 2%) and ammonium nitrogen (91 ± 3%), which were complied with the first grade A standard of pollutants for municipal wastewater treatment plant (DSPMWTP) in China. The stable power output of pilot MES was 406 ± 30 mW m^-3 based on effective liquid volume, or energy conversion performance of 2.03 × 10^-3 kWh m^-3 (one cubic meter of influent wastewater). The pilot MES achieved much lower effluent COD of 25 ± 7 mg L^-1 with HRT of 5 h, while that of activated sludge process in WWTP was 43 ± 6 mg L^-1 under HRT of 12 h. Even though the aeration of biocathode demanded a net electricity consumption of 3.44 × 10^-3 kWh m^-3, the low operation energy requirement for pilot MES was only 12% of that in a typical activated sludge process (0.3 kWh m^-3). By avoiding the utilization of IEMs and redundant structural materials, the pilot MES achieved a low system cost of $1702.1 (or $1135 m^-3) as well and promoted the further real-world application of MES.

Long-term effect of pH on denitrification: High pH benefits achieving partial-denitrification

Partial-denitrification (nitrate to nitrite) can supply nitrite for anammox which can reduce organic matter consumption in wastewater treatment plants (WWTPs). In order to achieve stable partial-denitrification, the effect of pH on denitrification were investigated for 420 days in three reactors with influent pH of 5.0, 7.0 and 9.0. The results indicate that the nitrite accumulation rate (NAR) increased with pH, with average effluent NARs being 21%, 38% and 57% in the above reactors, respectively. The sludge cultivated at a high pH of 9.0 was resistant to pH shock, with a high NAR being maintained at 83% when it was exposed to a low pH of 5.0. Metagenomic analysis showed that the higher NAR at pH 9.0 was correlated with an enrichment of Thauera, which harbored more nitrate reductase (8098 hits) than nitrite reductase (2950 hits). Based on these findings, a novel process was proposed for achieving partial-denitrification/anammox in mainstream WWTPs.

Impact of carbon source and COD/N on the concurrent operation of partial denitrification and anammox

In this study, concurrent operation of anammox and partial denitrification within a nonacclimated mixed culture system was proposed. The impact of carbon sources (acetate, glycerol, methanol, and ethanol) and COD/NO3^- -N ratio on partial denitrification selection under both short- and long-term operations was investigated. Results from short-term testing showed that all carbon sources supported partial denitrification. However, acetate and glycerol were preferred due to their display of efficient partial denitrification selection, which may be related to their different electron transport pathways in comparison with methanol. Long-term operation confirmed results of batch tests by showing the contribution of partial denitrification to nitrate removal above 90% after acclimation in both acetate and glycerol reactors. In contrast, methanol showed challenges of maintaining efficient partial denitrification. COD/NO3^- -N ratio mainly controlled the rate of nitrate reduction and not directly partial denitrification selection; thus, it should be used to balance between denitrification rate and anammox rate. PRACTITIONER POINTS: The authors aimed to investigate the impact of carbon sources and COD/NO3-N ratio on partial denitrification selection. All the carbon sources supported partial denitrification as long as the nitrite sink was available. 90% partial denitrification could be achieved with both acetate and glycerol in long-term operations. COD/NO3-N ratio did not directly control partial denitrification but can be used to balance between denitrification rate and anammox rate.

Substrate Diffusion within Biofilms Significantly Influencing the Electron Competition during Denitrification

A common and long-existing operational issue of wastewater denitrification is the unexpected accumulation of nitrite (NO₂^-) that could suppress the activity of various microorganisms involved in biological wastewater treatment process and nitrous oxide (N₂O) that could emit as a potent greenhouse gas. Recently, it has been confirmed that the accumulation of these denitrification intermediates in biological wastewater treatment process is greatly influenced by the electron competition between the four denitrification steps. However, little is known about this in biofilm systems. In this work, we applied a mathematical model that links carbon oxidation and nitrogen reduction processes through a pool of electron carriers, to assess electron competition in denitrifying biofilms. Simulations were performed comprehensively at seven combinations of electron acceptor addition scheme (i.e., simultaneous addition of one, two or three among nitrate (NO₃^-), NO₂^-, and N₂O) to compare the effect of electron competition on NO₃^-, NO₂^- and N₂O reduction. Overall, the effects of substrate loading, biofilm thickness and effective diffusion coefficients on electron competition are not always intuitive. Model simulations show that electron competition was intensified due to the substrate load limitation (from 120 to 20 mg COD/L) and increasing biofilm thicknesses (from 0.1 to 1.6 mm) in most cases, where electrons were prioritized to nitrite reductase because of the insufficient electron donor availability in the biofilm. In contrast, increasing effective diffusion coefficients did not pose a significant effect on electron competition and only increased electrons distributed to nitrite reductase when both NO₂^- and N₂O are added.

Dominance ofCandidatus saccharibacteriain SBRs achieving partial denitrification: effects of sludge acclimating methods on microbial communities and nitrite accumulation

Partial denitrification (NO₃⁻-N → NO₂⁻-N) was combined with anaerobic ammonium oxidation (ANAMMOX) to achieve nitrogen removal with a low C/N ratio and low energy consumption. Three different acclimation conditions, namely, R1 (sequencing batch reactor (SBR) under anoxic conditions), R2 (SBR under alternating anoxic/aerobic conditions), and R3 (SBR under low-intensity aeration), were investigated using glucose as an electron donor to achieve continuous accumulation of nitrite during a 120 d run. Subsequently, the denitrification performance and microbial community structure of the sludge were investigated. The results showed that the acclimatized sludge in reactors R2 and R3 achieved better partial denitrification performance than the sludge in R1 due to the presence of dissolved oxygen as a result of aeration. Notably, the R3 reactor had the optimal conditions for nitrite accumulation. The high-throughput sequencing analysis indicated that the dominant bacteria in R2 and R3 were Candidatus saccharibacteria with a relative abundance of 45.44% and 34.96%, respectively. This was the first time that Candidatus saccharibacteria was reported as the dominant bacteria in denitrifying sludge. The microbial diversity of the R1 reactor was much greater than that of R2 and R3, indicating that a larger proportion of denitrifying bacteria were present in the R2 and R3 reactors. In addition, the batch experiments showed that the higher the initial pH, the higher the nitrite accumulation rate was.

Partial denitrification (NO₃⁻-N → NO₂⁻-N) was combined with anaerobic ammonium oxidation (ANAMMOX) to achieve nitrogen removal with a low C/N ratio and low energy consumption.

Investigating the nitrification and denitrification kinetics under aerobic and anaerobic conditions by Paracoccus denitrificans ISTOD1

Municipal wastewater contains multiple nitrogen contaminants such as ammonia, nitrate and nitrite. Two heterotrophic nitrifier and aerobic denitrifiers, bacterial isolates ISTOD1 and ISTVD1 were isolated from domestic wastewater. On the basis of removal efficiency of ammonia, nitrate and nitrite under both aerobic and anaerobic conditions, ISTOD1 was selected and identified as Paracoccus denitrificans. Aerobically, NH₄⁺-N had maximum specific nitrogen removal rate (R_xi) of 7.6g/gDCW/h and anaerobically, NO₃^-N showed R_xi of 2.5*10^-1g/g DCW/h. Monod equation described the bioprocess kinetic coefficients, µ_max and K_s, obtained by regression. Error functions were calculated to validate the Monod equation experimental data. Aerobic NO₃^-N showed the highest Y_W of 0.372mg DCW/mg NO₃^-N among the five conditions. ISTOD1 serves as a potential candidate for treating nitrogen rich wastewater using simultaneous nitrification and aerobic denitrification. It can be used in bioaugmentation studies under varied condition.

Interaction of short-chain fatty acids carbon source on denitrification

Short-chain fatty acids (SCFAs) could be obtained from organic waste anaerobic digestion. The ability and interaction of different SCFAs on denitrification were investigated in this study. Two kinds of SCFAs (acetate and propionate with 5 different ratios) and 4 kinds of SCFAs (acetate, propionate, butyrate and valerate with 10 different ratios) were evaluated. Using acetate (Ac) and propionate (Pr) as carbon sources, the highest nitrate removal efficiency of 97.5% was obtained. When using the mixture of acetate (Ac), propionate (Pr), butyrate (Bu) and valerate (Va) as the carbon source, the highest nitrate removal efficiency obtained was 92.0%. The denitrification performance was affected significantly by different kinds and proportions of SCFAs. In addition, nitrite accumulation and chemical oxygen demand consumption for different contents of SCFAs were also analyzed.

The metabolic impact of extracellular nitrite on aerobic metabolism of Paracoccus denitrificans

Nitrite, in equilibrium with free nitrous acid (FNA), can inhibit both aerobic and anaerobic growth of microbial communities through bactericidal activities that have considerable potential for control of microbial growth in a range of water systems. There has been much focus on the effect of nitrite/FNA on anaerobic metabolism and so, to enhance understanding of the metabolic impact of nitrite/FNA on aerobic metabolism, a study was undertaken with a model denitrifying bacterium Paracoccus denitrificans PD1222. Extracellular nitrite inhibits aerobic growth of P. denitrificans in a pH-dependent manner that is likely to be a result of both nitrite and free nitrous acid (pK_a = 3.25) and subsequent reactive nitrogen oxides generated from the intracellular passage of FNA into P. denitrificans. Increased expression of a gene encoding a flavohemoglobin protein (Fhp) (Pden_1689) was observed in response to extracellular nitrite. Construction and analysis of a deletion mutant established Fhp to be involved in endowing nitrite/FNA resistance at high extracellular nitrite concentrations. Global transcriptional analysis confirmed nitrite-dependent expression of fhp and indicated that P. denitrificans expressed a number of stress response systems associated with protein, DNA and lipid repair. It is therefore suggested that nitrite causes a pH-dependent stress response that is due to the production of associated reactive nitrogen species, such as nitric oxide from the internalisation of FNA.

Sodium lauryl ether sulfate (SLES) degradation by nitrate-reducing bacteria

The surfactant sodium lauryl ether sulfate (SLES) is widely used in the composition of detergents and frequently ends up in wastewater treatment plants (WWTPs). While aerobic SLES degradation is well studied, little is known about the fate of this compound in anoxic environments, such as denitrification tanks of WWTPs, nor about the bacteria involved in the anoxic biodegradation. Here, we used SLES as sole carbon and energy source, at concentrations ranging from 50 to 1000 mg L⁻¹, to enrich and isolate nitrate-reducing bacteria from activated sludge of a WWTP with the anaerobic-anoxic-oxic (A²/O) concept. In the 50 mg L⁻¹ enrichment, Comamonas (50%), Pseudomonas (24%), and Alicycliphilus (12%) were present at higher relative abundance, while Pseudomonas (53%) became dominant in the 1000 mg L⁻¹ enrichment. Aeromonas hydrophila strain S7, Pseudomonas stutzeri strain S8, and Pseudomonas nitroreducens strain S11 were isolated from the enriched cultures. Under denitrifying conditions, strains S8 and S11 degraded 500 mg L⁻¹ SLES in less than 1 day, while strain S7 required more than 6 days. Strains S8 and S11 also showed a remarkable resistance to SLES, being able to grow and reduce nitrate with SLES concentrations up to 40 g L⁻¹. Strain S11 turned out to be the best anoxic SLES degrader, degrading up to 41% of 500 mg L⁻¹. The comparison between SLES anoxic and oxic degradation by strain S11 revealed differences in SLES cleavage, degradation, and sulfate accumulation; both ester and ether cleavage were probably employed in SLES anoxic degradation by strain S11.

Kinetic Study of Nitrate Removal from Aqueous Solutions Using Copper-Coated Iron Nanoparticles

Nitrates are considered hazard compounds for human health due to their tendency to be reduced to nitrites, in particular in reducing environment. Nano zero valent iron (nZVI) represents an efficient and low-cost adsorbent/reductive agent for nitrate removal from groundwater and wastewaters and a little addition of a second metal species (Cu, Pd, Ni, Ag) has proven to increase process effectiveness, by enhancing stability and oxidation resistance of nanoparticles. In this work Cu/Fe nanoparticles were loaded in a NO₃^- solution (100 mg L^-1) and the removal efficiency was tested by monitoring nitrate concentration at selected time intervals. Results showed that the nitrate removal process involves both reduction and adsorption processes: the removal mechanism has been investigated, and the pseudo-first-order and pseudo-second-order-adsorption kinetic models were successfully tested.

Impact of the electron donor on in situ microbial nitrate reduction in Opalinus Clay: results from the Mont Terri rock laboratory (Switzerland)

At the Mont Terri rock laboratory (Switzerland), an in situ experiment is being carried out to examine the fate of nitrate leaching from nitrate-containing bituminized radioactive waste, in a clay host rock for geological disposal. Such a release of nitrate may cause a geochemical perturbation of the clay, possibly affecting some of the favorable characteristics of the host rock. In this in situ experiment, combined transport and reactivity of nitrate is studied inside anoxic and water-saturated chambers in a borehole in the Opalinus Clay. Continuous circulation of the solution from the borehole to the surface equipment allows a regular sampling and online monitoring of its chemical composition. In this paper, in situ microbial nitrate reduction in the Opalinus Clay is discussed, in the presence or absence of additional electron donors relevant for the disposal concept and likely to be released from nitrate-containing bituminized radioactive waste: acetate (simulating bitumen degradation products) and H2 (originating from radiolysis and corrosion in the repository). The results of these tests indicate that-in case microorganisms would be active in the repository or the surrounding clay-microbial nitrate reduction can occur using electron donors naturally present in the clay (e.g. pyrite, dissolved organic matter). Nevertheless, non-reactive transport of nitrate in the clay is expected to be the main process. In contrast, when easily oxidizable electron donors would be available (e.g. acetate and H2), the microbial activity will be strongly stimulated. Both in the presence of H2 and acetate, nitrite and nitrogenous gases are predominantly produced, although some ammonium can also be formed when H2 is present. The reduction of nitrate in the clay could have an impact on the redox conditions in the pore-water and might also lead to a gas-related perturbation of the host rock, depending on the electron donor used during denitrification.

Fate of sulfamethoxazole in groundwater: Conceptualizing and modeling metabolite formation under different redox conditions

Degradation of emerging organic compounds in saturated porous media is usually postulated as following simple low-order models. This is a strongly oversimplified, and in some cases plainly incorrect model, that does not consider the fate of the different metabolites. Furthermore, it does not account for the reversibility in the reaction observed in a few emerging organic compounds, where the parent is recovered from the metabolite. One such compound is the antibiotic sulfamethoxazole (SMX). In this paper, we first compile existing experimental data to formulate a complete model for the degradation of SMX in aquifers subject to varying redox conditions, ranging from aerobic to iron reducing. SMX degrades reversibly or irreversibly to a number of metabolites that are specific of the redox state. Reactions are in all cases biologically mediated. We then propose a mathematical model that reproduces the full fate of dissolved SMX subject to anaerobic conditions and that can be used as a first step in emerging compound degradation modeling efforts. The model presented is tested against the results of the batch experiments of Barbieri et al. (2012) and Nödler et al. (2012) displaying a non-monotonic concentration of SMX as a function of time under denitrification conditions, as well as those of Mohatt et al. (2011), under iron reducing conditions.

Migraines Are Correlated with Higher Levels of Nitrate-, Nitrite-, and Nitric Oxide-Reducing Oral Microbes in the American Gut Project Cohort

Recent work has demonstrated a potentially symbiotic relationship between oral commensal bacteria and humans through the salivary nitrate-nitrite-nitric oxide pathway (C. Duncan et al., Nat Med 1:546–551, 1995, http://dx.doi.org/10.1038/nm0695-546). Oral nitrate-reducing bacteria contribute physiologically relevant levels of nitrite and nitric oxide to the human host that may have positive downstream effects on cardiovascular health (V. Kapil et al., Free Radic Biol Med 55:93–100, 2013, http://dx.doi.org/10.1016/j.freeradbiomed.2012.11.013). In the work presented here, we used 16S rRNA Illumina sequencing to determine whether a connection exists between oral nitrate-reducing bacteria, nitrates for cardiovascular disease, and migraines, which are a common side effect of nitrate medications (U. Thadani and T. Rodgers, Expert Opin Drug Saf 5:667–674, 2006, http://dx.doi.org/10.1517/14740338.5.5.667).

Nitrates, such as cardiac therapeutics and food additives, are common headache triggers, with nitric oxide playing an important role. Facultative anaerobic bacteria in the oral cavity may contribute migraine-triggering levels of nitric oxide through the salivary nitrate-nitrite-nitric oxide pathway. Using high-throughput sequencing technologies, we detected observable and significantly higher abundances of nitrate, nitrite, and nitric oxide reductase genes in migraineurs versus nonmigraineurs in samples collected from the oral cavity and a slight but significant difference in fecal samples.

IMPORTANCE Recent work has demonstrated a potentially symbiotic relationship between oral commensal bacteria and humans through the salivary nitrate-nitrite-nitric oxide pathway (C. Duncan et al., Nat Med 1:546–551, 1995, http://dx.doi.org/10.1038/nm0695-546). Oral nitrate-reducing bacteria contribute physiologically relevant levels of nitrite and nitric oxide to the human host that may have positive downstream effects on cardiovascular health (V. Kapil et al., Free Radic Biol Med 55:93–100, 2013, http://dx.doi.org/10.1016/j.freeradbiomed.2012.11.013). In the work presented here, we used 16S rRNA Illumina sequencing to determine whether a connection exists between oral nitrate-reducing bacteria, nitrates for cardiovascular disease, and migraines, which are a common side effect of nitrate medications (U. Thadani and T. Rodgers, Expert Opin Drug Saf 5:667–674, 2006, http://dx.doi.org/10.1517/14740338.5.5.667).

Post-denitrification using alginate beads containing organic carbon and activated sludge microorganisms

Nitrate concentration in the final effluent is a key issue in pre-denitrification biological treatment systems. This study investigated post-denitrification with alginate beads containing immobilized activated sludge microorganisms and organic carbon source. A batch study was first performed to identify suitable carbon sources among acetate, glucose, calcium tartrate, starch and canola oil on the basis of nitrate removal and bead stability. Canola oil and starch beads exhibited significantly higher denitrification rates, greater bead stability and lower nitrite accumulation (6 mg/L and 10 mg/L, respectively). Glucose and acetate beads showed longer acclimation phases and degraded faster whereas tartrate beads had higher nitrite build-up (39 mg/L) and degraded due to brittleness. Post-denitrification with canola oil and starch beads was investigated in the final clarifier of a coupled upflow bioreactor and aerobic system treating synthetic dairy farm wastewater, and showed a denitrification efficiency of >90%. Beads faded in 12 days due to alginate degradation. Therefore, enhancement in bead strength or use of more stable nontoxic gel would be required to further prolong the treatment. Moreover, this study was conducted at laboratory scale and further research is needed for application in real systems.

Candidatus Accumulibacter phosphatis clades enriched under cyclic anaerobic and microaerobic conditions simultaneously use different electron acceptors

Lab- and pilot-scale simultaneous nitrification, denitrification and phosphorus removal-sequencing batch reactors were operated under cyclic anaerobic and micro-aerobic conditions. The use of oxygen, nitrite, and nitrate as electron acceptors by Candidatus Accumulibacter phosphatis during the micro-aerobic stage was investigated. A complete clade-level characterization of Accumulibacter in both reactors was performed using newly designed qPCR primers targeting the polyphosphate kinase gene (ppk1). In the lab-scale reactor, limited-oxygen conditions led to an alternated dominance of Clade IID and IC over the other clades. Results from batch tests when Clade IC was dominant (i.e., >92% of Accumulibacter) showed that this clade was capable of using oxygen, nitrite and nitrate as electron acceptors for P uptake. A more heterogeneous distribution of clades was found in the pilot-scale system (Clades IIA, IIB, IIC, IID, IA, and IC), and in this reactor, oxygen, nitrite and nitrate were also used as electron acceptors coupled to phosphorus uptake. However, nitrite was not an efficient electron acceptor in either reactor, and nitrate allowed only partial P removal. The results from the Clade IC dominated reactor indicated that either organisms in this clade can simultaneously use multiple electron acceptors under micro-aerobic conditions, or that the use of multiple electron acceptors by Clade IC is due to significant microdiversity within the Accumulibacter clades defined using the ppk1 gene.

Engineering microbial consortia for controllable outputs

Much research has been invested into engineering microorganisms to perform desired biotransformations; nonetheless, these efforts frequently fall short of expected results due to the unforeseen effects of biofeedback regulation and functional incompatibility. In nature, metabolic function is compartmentalized into diverse organisms assembled into robust consortia, in which the division of labor is thought to lead to increased community efficiency and productivity. Here we consider whether and how consortia can be designed to perform bioprocesses of interest beyond the metabolic flexibility limitations of a single organism. Advances in post-genomic analysis of microbial consortia and application of high-resolution global measurements now offer the promise of systems-level understanding of how microbial consortia adapt to changes in environmental variables and inputs of carbon and energy. We argue that, when combined with appropriate modeling frameworks, systems-level knowledge can markedly improve our ability to predict the fate and functioning of consortia. Here we articulate our collective perspective on the current and future state of microbial community engineering and control while placing specific emphasis on ecological principles that promote control over community function and emergent properties.

Segregating metabolic processes into different microbial cells accelerates the consumption of inhibitory substrates

Different microbial cell types typically specialize at performing different metabolic processes. A canonical example is substrate cross-feeding, where one cell type consumes a primary substrate into an intermediate and another cell type consumes the intermediate. While substrate cross-feeding is widely observed, its consequences on ecosystem processes is often unclear. How does substrate cross-feeding affect the rate or extent of substrate consumption? We hypothesized that substrate cross-feeding eliminates competition between different enzymes and reduces the accumulation of growth-inhibiting intermediates, thus accelerating substrate consumption. We tested this hypothesis using isogenic mutants of the bacterium Pseudomonas stutzeri that either completely consume nitrate to dinitrogen gas or cross-feed the intermediate nitrite. We demonstrate that nitrite cross-feeding eliminates inter-enzyme competition and, in turn, reduces nitrite accumulation. We further demonstrate that nitrite cross-feeding accelerates substrate consumption, but only when nitrite has growth-inhibiting effects. Knowledge about inter-enzyme competition and the inhibitory effects of intermediates could therefore be important for deciding how to best segregate different metabolic processes into different microbial cell types to optimize a desired biotransformation.

Transient Accumulation of NO2- and N2O during Denitrification Explained by Assuming Cell Diversification by Stochastic Transcription of Denitrification Genes

Denitrifying bacteria accumulate NO2−, NO, and N₂O, the amounts depending on transcriptional regulation of core denitrification genes in response to O₂-limiting conditions. The genes include nar, nir, nor and nosZ, encoding NO3−-, NO2−-, NO- and N₂O reductase, respectively. We previously constructed a dynamic model to simulate growth and respiration in batch cultures of Paracoccus denitrificans. The observed denitrification kinetics were adequately simulated by assuming a stochastic initiation of nir-transcription in each cell with an extremely low probability (0.5% h^-1), leading to product- and substrate-induced transcription of nir and nor, respectively, via NO. Thus, the model predicted cell diversification: after O₂ depletion, only a small fraction was able to grow by reducing NO2−. Here we have extended the model to simulate batch cultivation with NO3−, i.e., NO2−, NO, N₂O, and N₂ kinetics, measured in a novel experiment including frequent measurements of NO2−. Pa. denitrificans reduced practically all NO3− to NO2− before initiating gas production. The NO2− production is adequately simulated by assuming stochastic nar-transcription, as that for nirS, but with a higher probability (0.035 h^-1) and initiating at a higher O₂ concentration. Our model assumes that all cells express nosZ, thus predicting that a majority of cells have only N₂O-reductase (A), while a minority (B) has NO2−-, NO- and N₂O-reductase. Population B has a higher cell-specific respiration rate than A because the latter can only use N₂O produced by B. Thus, the ratio BA is low immediately after O₂ depletion, but increases throughout the anoxic phase because B grows faster than A. As a result, the model predicts initially low but gradually increasing N₂O concentration throughout the anoxic phase, as observed. The modelled cell diversification neatly explains the observed denitrification kinetics and transient intermediate accumulations. The result has major implications for understanding the relationship between genotype and phenotype in denitrification research.

Denitrifiers generally respire O₂, but if O₂ becomes limiting, they may switch to anaerobic respiration (denitrification) by producing NO3−-, NO2−-, NO- and/or N₂O reductase, encoded by nar, nir, nor, and nosZ genes, respectively. Denitrification causes transient accumulation of NO2− and NO/N₂O emissions, depending on the activity of the four reductases. Denitrifiers lacking nosZ produce ~100% N₂O, whereas organisms with only nosZ are net consumers of N₂O. Full-fledged denitrifiers are equipped with all four reductases, genetic regulation of which determines NO2− accumulation and NO/N₂O emissions. Paracoccus denitrificans is a full-fledged denitrifying bacterium, and here we present a modelling approach to understand its gene regulation. We found that the observed transient accumulation of NO2− and N₂O can be neatly explained by assuming cell diversification: all cells expressing nosZ, while a minority expressing nar and nir+nor. Thus, the model predicts that in a batch culture of this organism, only a minor sub-population is full-fledged denitrifier. The cell diversification is a plausible outcome of stochastic initiation of nar- and nir transcription, which then becomes autocatalytic by NO2−and NO, respectively. The findings are important for understanding the regulation of denitrification in bacteria: product-induced transcription of denitrification genes is common, and we surmise that diversification in response to anoxia is widespread.