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Jaubert O, Montalt‐Tordera J, Knight D, Arridge S, Steeden J, Muthurangu V. HyperSLICE: HyperBand optimized spiral for low-latency interactive cardiac examination. Magn Reson Med 2024; 91:266-279. [PMID: 37799087 PMCID: PMC10953456 DOI: 10.1002/mrm.29855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 08/15/2023] [Accepted: 08/15/2023] [Indexed: 10/07/2023]
Abstract
PURPOSE Interactive cardiac MRI is used for fast scan planning and MR-guided interventions. However, the requirement for real-time acquisition and near-real-time visualization constrains the achievable spatio-temporal resolution. This study aims to improve interactive imaging resolution through optimization of undersampled spiral sampling and leveraging of deep learning for low-latency reconstruction (deep artifact suppression). METHODS A variable density spiral trajectory was parametrized and optimized via HyperBand to provide the best candidate trajectory for rapid deep artifact suppression. Training data consisted of 692 breath-held CINEs. The developed interactive sequence was tested in simulations and prospectively in 13 subjects (10 for image evaluation, 2 during catheterization, 1 during exercise). In the prospective study, the optimized framework-HyperSLICE- was compared with conventional Cartesian real-time and breath-hold CINE imaging in terms quantitative and qualitative image metrics. Statistical differences were tested using Friedman chi-squared tests with post hoc Nemenyi test (p < 0.05). RESULTS In simulations the normalized RMS error, peak SNR, structural similarity, and Laplacian energy were all statistically significantly higher using optimized spiral compared to radial and uniform spiral sampling, particularly after scan plan changes (structural similarity: 0.71 vs. 0.45 and 0.43). Prospectively, HyperSLICE enabled a higher spatial and temporal resolution than conventional Cartesian real-time imaging. The pipeline was demonstrated in patients during catheter pull back, showing sufficiently fast reconstruction for interactive imaging. CONCLUSION HyperSLICE enables high spatial and temporal resolution interactive imaging. Optimizing the spiral sampling enabled better overall image quality and superior handling of image transitions compared with radial and uniform spiral trajectories.
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Affiliation(s)
- Olivier Jaubert
- UCL Center for Translational Cardiovascular ImagingUniversity College LondonLondonUK
| | | | - Daniel Knight
- UCL Center for Translational Cardiovascular ImagingUniversity College LondonLondonUK
- Department of CardiologyRoyal Free London NHS Foundation TrustLondonUK
| | - Simon Arridge
- Department of Computer ScienceUniversity College LondonLondonUK
| | - Jennifer Steeden
- UCL Center for Translational Cardiovascular ImagingUniversity College LondonLondonUK
| | - Vivek Muthurangu
- UCL Center for Translational Cardiovascular ImagingUniversity College LondonLondonUK
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Liao C, Yarach U, Cao X, Iyer SS, Wang N, Kim TH, Tian Q, Bilgic B, Kerr AB, Setsompop K. High-fidelity mesoscale in-vivo diffusion MRI through gSlider-BUDA and circular EPI with S-LORAKS reconstruction. Neuroimage 2023; 275:120168. [PMID: 37187364 PMCID: PMC10451786 DOI: 10.1016/j.neuroimage.2023.120168] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 04/27/2023] [Accepted: 05/12/2023] [Indexed: 05/17/2023] Open
Abstract
PURPOSE To develop a high-fidelity diffusion MRI acquisition and reconstruction framework with reduced echo-train-length for less T2* image blurring compared to typical highly accelerated echo-planar imaging (EPI) acquisitions at sub-millimeter isotropic resolution. METHODS We first proposed a circular-EPI trajectory with partial Fourier sampling on both the readout and phase-encoding directions to minimize the echo-train-length and echo time. We then utilized this trajectory in an interleaved two-shot EPI acquisition with reversed phase-encoding polarity, to aid in the correction of off-resonance-induced image distortions and provide complementary k-space coverage in the missing partial Fourier regions. Using model-based reconstruction with structured low-rank constraint and smooth phase prior, we corrected the shot-to-shot phase variations across the two shots and recover the missing k-space data. Finally, we combined the proposed acquisition/reconstruction framework with an SNR-efficient RF-encoded simultaneous multi-slab technique, termed gSlider, to achieve high-fidelity 720 µm and 500 µm isotropic resolution in-vivo diffusion MRI. RESULTS Both simulation and in-vivo results demonstrate the effectiveness of the proposed acquisition and reconstruction framework to provide distortion-corrected diffusion imaging at the mesoscale with markedly reduced T2*-blurring. The in-vivo results of 720 µm and 500 µm datasets show high-fidelity diffusion images with reduced image blurring and echo time using the proposed approaches. CONCLUSIONS The proposed method provides high-quality distortion-corrected diffusion-weighted images with ∼40% reduction in the echo-train-length and T2* blurring at 500µm-isotropic-resolution compared to standard multi-shot EPI.
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Affiliation(s)
- Congyu Liao
- Department of Radiology, Stanford University, Stanford, CA, USA; Department of Electrical Engineering, Stanford University, Stanford, CA, USA
| | - Uten Yarach
- Radiologic Technology Department, Associated Medical Sciences, Chiang Mai University, Chiang Mai, Thailand
| | - Xiaozhi Cao
- Department of Radiology, Stanford University, Stanford, CA, USA; Department of Electrical Engineering, Stanford University, Stanford, CA, USA.
| | - Siddharth Srinivasan Iyer
- Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Nan Wang
- Department of Radiology, Stanford University, Stanford, CA, USA; Department of Electrical Engineering, Stanford University, Stanford, CA, USA
| | - Tae Hyung Kim
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA; Department of Radiology, Harvard Medical School, Boston, MA, USA; Department of Computer Engineering, Hongik University, Seoul, South Korea
| | - Qiyuan Tian
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA; Department of Radiology, Harvard Medical School, Boston, MA, USA
| | - Berkin Bilgic
- Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA; Department of Radiology, Harvard Medical School, Boston, MA, USA
| | - Adam B Kerr
- Department of Electrical Engineering, Stanford University, Stanford, CA, USA; Stanford Center for Cognitive and Neurobiological Imaging, Stanford University, Stanford, CA, USA
| | - Kawin Setsompop
- Department of Radiology, Stanford University, Stanford, CA, USA; Department of Electrical Engineering, Stanford University, Stanford, CA, USA
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Feng L. 4D Golden-Angle Radial MRI at Subsecond Temporal Resolution. NMR IN BIOMEDICINE 2023; 36:e4844. [PMID: 36259951 PMCID: PMC9845193 DOI: 10.1002/nbm.4844] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Revised: 09/29/2022] [Accepted: 10/13/2022] [Indexed: 05/14/2023]
Abstract
Intraframe motion blurring, as a major challenge in free-breathing dynamic MRI, can be reduced if high temporal resolution can be achieved. To address this challenge, this work proposes a highly accelerated 4D (3D + time) dynamic MRI framework with subsecond temporal resolution that does not require explicit motion compensation. The method combines standard stack-of-stars golden-angle radial sampling and tailored GRASP-Pro (Golden-angle RAdial Sparse Parallel imaging with imProved performance) reconstruction. Specifically, 4D dynamic MRI acquisition is performed continuously without motion gating or sorting. The k-space centers in stack-of-stars radial data are organized to guide estimation of a temporal basis, with which GRASP-Pro reconstruction is employed to enforce joint low-rank subspace and sparsity constraints. This new basis estimation strategy is the new feature proposed for subspace-based reconstruction in this work to achieve high temporal resolution (e.g., subsecond/3D volume). It does not require sequence modification to acquire additional navigation data, it is compatible with commercially available stack-of-stars sequences, and it does not need an intermediate reconstruction step. The proposed 4D dynamic MRI approach was tested in abdominal motion phantom, free-breathing abdominal MRI, and dynamic contrast-enhanced MRI (DCE-MRI). Our results have shown that GRASP-Pro reconstruction with the new basis estimation strategy enables highly-accelerated 4D dynamic imaging at subsecond temporal resolution (with five spokes or less for each dynamic frame per image slice) for both free-breathing non-DCE-MRI and DCE-MRI. In the abdominal phantom, better image quality with lower root mean square error and higher structural similarity index was achieved using GRASP-Pro compared with standard GRASP. With the ability to acquire each 3D image in less than 1 s, intraframe respiratory blurring can be intrinsically reduced for body applications with our approach, which eliminates the need for explicit motion detection and motion compensation.
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Affiliation(s)
- Li Feng
- Biomedical Engineering and Imaging Institute and Department of Radiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA
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Nayak KS, Lim Y, Campbell-Washburn AE, Steeden J. Real-Time Magnetic Resonance Imaging. J Magn Reson Imaging 2022; 55:81-99. [PMID: 33295674 PMCID: PMC8435094 DOI: 10.1002/jmri.27411] [Citation(s) in RCA: 28] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2020] [Revised: 10/06/2020] [Accepted: 10/09/2020] [Indexed: 01/03/2023] Open
Abstract
Real-time magnetic resonance imaging (RT-MRI) allows for imaging dynamic processes as they occur, without relying on any repetition or synchronization. This is made possible by modern MRI technology such as fast-switching gradients and parallel imaging. It is compatible with many (but not all) MRI sequences, including spoiled gradient echo, balanced steady-state free precession, and single-shot rapid acquisition with relaxation enhancement. RT-MRI has earned an important role in both diagnostic imaging and image guidance of invasive procedures. Its unique diagnostic value is prominent in areas of the body that undergo substantial and often irregular motion, such as the heart, gastrointestinal system, upper airway vocal tract, and joints. Its value in interventional procedure guidance is prominent for procedures that require multiple forms of soft-tissue contrast, as well as flow information. In this review, we discuss the history of RT-MRI, fundamental tradeoffs, enabling technology, established applications, and current trends. LEVEL OF EVIDENCE: 5 TECHNICAL EFFICACY STAGE: 1.
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Affiliation(s)
- Krishna S. Nayak
- Ming Hsieh Department of Electrical and Computer Engineering, University of Southern California, Los Angeles, California, USA,Address reprint requests to: K.S.N., 3740 McClintock Ave, EEB 400C, Los Angeles, CA 90089-2564, USA.
| | - Yongwan Lim
- Ming Hsieh Department of Electrical and Computer Engineering, University of Southern California, Los Angeles, California, USA
| | - Adrienne E. Campbell-Washburn
- Cardiovascular Branch, Division of Intramural Research, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland, USA
| | - Jennifer Steeden
- Institute of Cardiovascular Science, Centre for Cardiovascular Imaging, University College London, London, UK
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Jaubert O, Montalt‐Tordera J, Knight D, Coghlan GJ, Arridge S, Steeden JA, Muthurangu V. Real-time deep artifact suppression using recurrent U-Nets for low-latency cardiac MRI. Magn Reson Med 2021; 86:1904-1916. [PMID: 34032308 PMCID: PMC8613539 DOI: 10.1002/mrm.28834] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Revised: 03/22/2021] [Accepted: 04/17/2021] [Indexed: 12/11/2022]
Abstract
PURPOSE Real-time low latency MRI is performed to guide various cardiac interventions. Real-time acquisitions often require iterative image reconstruction strategies, which lead to long reconstruction times. In this study, we aim to reconstruct highly undersampled radial real-time data with low latency using deep learning. METHODS A 2D U-Net with convolutional long short-term memory layers is proposed to exploit spatial and preceding temporal information to reconstruct highly accelerated tiny golden radial data with low latency. The network was trained using a dataset of breath-hold CINE data (including 770 time series from 7 different orientations). Synthetic paired data were created by retrospectively undersampling the magnitude images, and the network was trained to recover the target images. In the spirit of interventional imaging, the network was trained and tested for varying acceleration rates and orientations. Data were prospectively acquired and reconstructed in real time in 1 healthy subject interactively and in 3 patients who underwent catheterization. Images were visually compared to sliding window and compressed sensing reconstructions and a conventional Cartesian real-time sequence. RESULTS The proposed network generalized well to different acceleration rates and unseen orientations for all considered metrics in simulated data (less than 4% reduction in structural similarity index compared to similar acceleration and orientation-specific networks). The proposed reconstruction was demonstrated interactively, successfully depicting catheters in vivo with low latency (39 ms, including 19 ms for deep artifact suppression) and an image quality comparing favorably to other reconstructions. CONCLUSION Deep artifact suppression was successfully demonstrated in the time-critical application of non-Cartesian real-time interventional cardiac MR.
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Affiliation(s)
- Olivier Jaubert
- Department of Computer ScienceUniversity College LondonLondonUnited Kingdom
- UCL Centre for Translational Cardiovascular ImagingUniversity College LondonLondonUnited Kingdom
| | - Javier Montalt‐Tordera
- UCL Centre for Translational Cardiovascular ImagingUniversity College LondonLondonUnited Kingdom
| | - Dan Knight
- UCL Centre for Translational Cardiovascular ImagingUniversity College LondonLondonUnited Kingdom
- Department of CardiologyRoyal Free London NHS Foundation TrustLondonUnited Kingdom
| | - Gerry J. Coghlan
- UCL Centre for Translational Cardiovascular ImagingUniversity College LondonLondonUnited Kingdom
- Department of CardiologyRoyal Free London NHS Foundation TrustLondonUnited Kingdom
| | - Simon Arridge
- Department of Computer ScienceUniversity College LondonLondonUnited Kingdom
| | - Jennifer A. Steeden
- UCL Centre for Translational Cardiovascular ImagingUniversity College LondonLondonUnited Kingdom
| | - Vivek Muthurangu
- UCL Centre for Translational Cardiovascular ImagingUniversity College LondonLondonUnited Kingdom
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Lim Y, Toutios A, Bliesener Y, Tian Y, Lingala SG, Vaz C, Sorensen T, Oh M, Harper S, Chen W, Lee Y, Töger J, Monteserin ML, Smith C, Godinez B, Goldstein L, Byrd D, Nayak KS, Narayanan SS. A multispeaker dataset of raw and reconstructed speech production real-time MRI video and 3D volumetric images. Sci Data 2021; 8:187. [PMID: 34285240 PMCID: PMC8292336 DOI: 10.1038/s41597-021-00976-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Accepted: 06/22/2021] [Indexed: 12/11/2022] Open
Abstract
Real-time magnetic resonance imaging (RT-MRI) of human speech production is enabling significant advances in speech science, linguistics, bio-inspired speech technology development, and clinical applications. Easy access to RT-MRI is however limited, and comprehensive datasets with broad access are needed to catalyze research across numerous domains. The imaging of the rapidly moving articulators and dynamic airway shaping during speech demands high spatio-temporal resolution and robust reconstruction methods. Further, while reconstructed images have been published, to-date there is no open dataset providing raw multi-coil RT-MRI data from an optimized speech production experimental setup. Such datasets could enable new and improved methods for dynamic image reconstruction, artifact correction, feature extraction, and direct extraction of linguistically-relevant biomarkers. The present dataset offers a unique corpus of 2D sagittal-view RT-MRI videos along with synchronized audio for 75 participants performing linguistically motivated speech tasks, alongside the corresponding public domain raw RT-MRI data. The dataset also includes 3D volumetric vocal tract MRI during sustained speech sounds and high-resolution static anatomical T2-weighted upper airway MRI for each participant.
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Affiliation(s)
- Yongwan Lim
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Asterios Toutios
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Yannick Bliesener
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Ye Tian
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Sajan Goud Lingala
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Colin Vaz
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Tanner Sorensen
- Department of Linguistics, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA
| | - Miran Oh
- Department of Linguistics, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA
| | - Sarah Harper
- Department of Linguistics, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA
| | - Weiyi Chen
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Yoonjeong Lee
- Department of Linguistics, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA
| | - Johannes Töger
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Mairym Lloréns Monteserin
- Department of Linguistics, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA
| | - Caitlin Smith
- Department of Linguistics, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA
| | - Bianca Godinez
- Department of Linguistics, California State University Long Beach, Long Beach, California, USA
| | - Louis Goldstein
- Department of Linguistics, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA
| | - Dani Byrd
- Department of Linguistics, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA
| | - Krishna S Nayak
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Shrikanth S Narayanan
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA.
- Department of Linguistics, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA.
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7
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Tian Y, Lim Y, Zhao Z, Byrd D, Narayanan S, Nayak KS. Aliasing artifact reduction in spiral real-time MRI. Magn Reson Med 2021; 86:916-925. [PMID: 33728700 DOI: 10.1002/mrm.28746] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Revised: 01/09/2021] [Accepted: 02/02/2021] [Indexed: 12/17/2022]
Abstract
PURPOSE To mitigate a common artifact in spiral real-time MRI, caused by aliasing of signal outside the desired FOV. This artifact frequently occurs in midsagittal speech real-time MRI. METHODS Simulations were performed to determine the likely origin of the artifact. Two methods to mitigate the artifact are proposed. The first approach, denoted as "large FOV" (LF), keeps an FOV that is large enough to include the artifact signal source during reconstruction. The second approach, denoted as "estimation-subtraction" (ES), estimates the artifact signal source before subtracting a synthetic signal representing that source in multicoil k-space raw data. Twenty-five midsagittal speech-production real-time MRI data sets were used to evaluate both of the proposed methods. Reconstructions without and with corrections were evaluated by two expert readers using a 5-level Likert scale assessing artifact severity. Reconstruction time was also compared. RESULTS The origin of the artifact was found to be a combination of gradient nonlinearity and imperfect anti-aliasing in spiral sampling. The LF and ES methods were both able to substantially reduce the artifact, with an averaged qualitative score improvement of 1.25 and 1.35 Likert levels for LF correction and ES correction, respectively. Average reconstruction time without correction, with LF correction, and with ES correction were 160.69 ± 1.56, 526.43 ± 5.17, and 171.47 ± 1.71 ms/frame. CONCLUSION Both proposed methods were able to reduce the spiral aliasing artifacts, with the ES-reduction method being more effective and more time efficient.
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Affiliation(s)
- Ye Tian
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Yongwan Lim
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Ziwei Zhao
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Dani Byrd
- Department of Linguistics, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA
| | - Shrikanth Narayanan
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA.,Department of Linguistics, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, California, USA
| | - Krishna S Nayak
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
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Zhao Z, Lim Y, Byrd D, Narayanan S, Nayak KS. Improved 3D real-time MRI of speech production. Magn Reson Med 2021; 85:3182-3195. [PMID: 33452722 DOI: 10.1002/mrm.28651] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2020] [Revised: 10/29/2020] [Accepted: 11/26/2020] [Indexed: 01/21/2023]
Abstract
PURPOSE To provide 3D real-time MRI of speech production with improved spatio-temporal sharpness using randomized, variable-density, stack-of-spiral sampling combined with a 3D spatio-temporally constrained reconstruction. METHODS We evaluated five candidate (k, t) sampling strategies using a previously proposed gradient-echo stack-of-spiral sequence and a 3D constrained reconstruction with spatial and temporal penalties. Regularization parameters were chosen by expert readers based on qualitative assessment. We experimentally determined the effect of spiral angle increment and kz temporal order. The strategy yielding highest image quality was chosen as the proposed method. We evaluated the proposed and original 3D real-time MRI methods in 2 healthy subjects performing speech production tasks that invoke rapid movements of articulators seen in multiple planes, using interleaved 2D real-time MRI as the reference. We quantitatively evaluated tongue boundary sharpness in three locations at two speech rates. RESULTS The proposed data-sampling scheme uses a golden-angle spiral increment in the kx -ky plane and variable-density, randomized encoding along kz . It provided a statistically significant improvement in tongue boundary sharpness score (P < .001) in the blade, body, and root of the tongue during normal and 1.5-times speeded speech. Qualitative improvements were substantial during natural speech tasks of alternating high, low tongue postures during vowels. The proposed method was also able to capture complex tongue shapes during fast alveolar consonant segments. Furthermore, the proposed scheme allows flexible retrospective selection of temporal resolution. CONCLUSION We have demonstrated improved 3D real-time MRI of speech production using randomized, variable-density, stack-of-spiral sampling with a 3D spatio-temporally constrained reconstruction.
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Affiliation(s)
- Ziwei Zhao
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA
| | - Yongwan Lim
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA
| | - Dani Byrd
- Department of Linguistics, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA
| | - Shrikanth Narayanan
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA.,Department of Linguistics, Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA, USA
| | - Krishna S Nayak
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, CA, USA
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Lim Y, Bliesener Y, Narayanan S, Nayak KS. Deblurring for spiral real-time MRI using convolutional neural networks. Magn Reson Med 2020; 84:3438-3452. [PMID: 32710516 PMCID: PMC7722023 DOI: 10.1002/mrm.28393] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2020] [Revised: 05/06/2020] [Accepted: 06/01/2020] [Indexed: 12/20/2022]
Abstract
PURPOSE To develop and evaluate a fast and effective method for deblurring spiral real-time MRI (RT-MRI) using convolutional neural networks. METHODS We demonstrate a 3-layer residual convolutional neural networks to correct image domain off-resonance artifacts in speech production spiral RT-MRI without the knowledge of field maps. The architecture is motivated by the traditional deblurring approaches. Spatially varying off-resonance blur is synthetically generated by using discrete object approximation and field maps with data augmentation from a large database of 2D human speech production RT-MRI. The effect of off-resonance range, shift-invariance of blur, and readout durations on deblurring performance are investigated. The proposed method is validated using synthetic and real data with longer readouts, quantitatively using image quality metrics and qualitatively via visual inspection, and with a comparison to conventional deblurring methods. RESULTS Deblurring performance was found superior to a current autocalibrated method for in vivo data and only slightly worse than an ideal reconstruction with perfect knowledge of the field map for synthetic test data. Convolutional neural networks deblurring made it possible to visualize articulator boundaries with readouts up to 8 ms at 1.5 T, which is 3-fold longer than the current standard practice. The computation time was 12.3 ± 2.2 ms per frame, enabling low-latency processing for RT-MRI applications. CONCLUSION Convolutional neural networks deblurring is a practical, efficient, and field map-free approach for the deblurring of spiral RT-MRI. In the context of speech production imaging, this can enable 1.7-fold improvement in scan efficiency and the use of spiral readouts at higher field strengths such as 3 T.
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Affiliation(s)
- Yongwan Lim
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Yannick Bliesener
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Shrikanth Narayanan
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
| | - Krishna S. Nayak
- Ming Hsieh Department of Electrical and Computer Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, California, USA
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Rosenzweig S, Scholand N, Holme HCM, Uecker M. Cardiac and Respiratory Self-Gating in Radial MRI Using an Adapted Singular Spectrum Analysis (SSA-FARY). IEEE TRANSACTIONS ON MEDICAL IMAGING 2020; 39:3029-3041. [PMID: 32275585 DOI: 10.1109/tmi.2020.2985994] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Cardiac Magnetic Resonance Imaging (MRI) is time-consuming and error-prone. To ease the patient's burden and to increase the efficiency and robustness of cardiac exams, interest in methods based on continuous steady-state acquisition and self-gating has been growing in recent years. Self-gating methods extract the cardiac and respiratory signals from the measurement data and then retrospectively sort the data into cardiac and respiratory phases. Repeated breathholds and synchronization with the heart beat using some external device as required in conventional MRI are then not necessary. In this work, we introduce a novel self-gating method for radially acquired data based on a dimensionality reduction technique for time-series analysis (SSA-FARY). Building on Singular Spectrum Analysis, a zero-padded, time-delayed embedding of the auto-calibration data is analyzed using Principle Component Analysis. We demonstrate the basic functionality of SSA-FARY using numerical simulations and apply it to in-vivo cardiac radial single-slice bSSFP and Simultaneous Multi-Slice radiofrequency-spoiled gradient-echo measurements, as well as to Stack-of-Stars bSSFP measurements. SSA-FARY reliably detects the cardiac and respiratory motion and separates it from noise. We utilize the generated signals for high-dimensional image reconstruction using parallel imaging and compressed sensing with in-plane wavelet and (spatio-)temporal total-variation regularization.
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11
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Ong F, Zhu X, Cheng JY, Johnson KM, Larson PEZ, Vasanawala SS, Lustig M. Extreme MRI: Large-scale volumetric dynamic imaging from continuous non-gated acquisitions. Magn Reson Med 2020; 84:1763-1780. [PMID: 32270547 DOI: 10.1002/mrm.28235] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Revised: 02/05/2020] [Accepted: 02/06/2020] [Indexed: 12/30/2022]
Abstract
PURPOSE To develop a framework to reconstruct large-scale volumetric dynamic MRI from rapid continuous and non-gated acquisitions, with applications to pulmonary and dynamic contrast-enhanced (DCE) imaging. THEORY AND METHODS The problem considered here requires recovering 100 gigabytes of dynamic volumetric image data from a few gigabytes of k-space data, acquired continuously over several minutes. This reconstruction is vastly under-determined, heavily stressing computing resources as well as memory management and storage. To overcome these challenges, we leverage intrinsic three-dimensional (3D) trajectories, such as 3D radial and 3D cones, with ordering that incoherently cover time and k-space over the entire acquisition. We then propose two innovations: (a) A compressed representation using multiscale low-rank matrix factorization that constrains the reconstruction problem, and reduces its memory footprint. (b) Stochastic optimization to reduce computation, improve memory locality, and minimize communications between threads and processors. We demonstrate the feasibility of the proposed method on DCE imaging acquired with a golden-angle ordered 3D cones trajectory and pulmonary imaging acquired with a bit-reversed ordered 3D radial trajectory. We compare it with "soft-gated" dynamic reconstruction for DCE and respiratory-resolved reconstruction for pulmonary imaging. RESULTS The proposed technique shows transient dynamics that are not seen in gating-based methods. When applied to datasets with irregular, or non-repetitive motions, the proposed method displays sharper image features. CONCLUSIONS We demonstrated a method that can reconstruct massive 3D dynamic image series in the extreme undersampling and extreme computation setting.
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Affiliation(s)
- Frank Ong
- Electrical Engineering, Stanford University, Stanford, CA, USA.,Electrical Engineering and Computer Sciences, University of California, Berkeley, CA, USA
| | - Xucheng Zhu
- UC Berkeley-UCSF Graduate Program in Bioengineering, University of California, San Francisco, CA, USA.,Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA
| | - Joseph Y Cheng
- Department of Radiology, Stanford University, Stanford, CA, USA
| | - Kevin M Johnson
- Medical Physics, University of Wisconsin, Madison, WI, USA.,Department of Radiology, University of Wisconsin, Madison, WI, USA
| | - Peder E Z Larson
- Radiology and Biomedical Imaging, University of California, San Francisco, CA, USA
| | | | - Michael Lustig
- Electrical Engineering and Computer Sciences, University of California, Berkeley, CA, USA
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12
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Nayak KS. Response to Letter to the Editor: "Nomenclature for real-time magnetic resonance imaging". Magn Reson Med 2019; 82:525-526. [PMID: 31025418 DOI: 10.1002/mrm.27770] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Accepted: 03/21/2019] [Indexed: 12/11/2022]
Affiliation(s)
- Krishna S Nayak
- Ming Hsieh Department of Electrical and Computer Engineering, University of Southern California, Los Angeles, California
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13
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Rosenzweig S, Holme HCM, Uecker M. Simple auto‐calibrated gradient delay estimation from few spokes using Radial Intersections (RING). Magn Reson Med 2018; 81:1898-1906. [DOI: 10.1002/mrm.27506] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2018] [Revised: 07/02/2018] [Accepted: 08/08/2018] [Indexed: 12/14/2022]
Affiliation(s)
- Sebastian Rosenzweig
- Institute for Diagnostic and Interventional RadiologyUniversity Medical Center Göttingen Göttingen Germany
| | - H. Christian M. Holme
- Institute for Diagnostic and Interventional RadiologyUniversity Medical Center Göttingen Göttingen Germany
- German Centre for Cardiovascular Research (DZHK), Partner site Göttingen Göttingen Germany
| | - Martin Uecker
- Institute for Diagnostic and Interventional RadiologyUniversity Medical Center Göttingen Göttingen Germany
- German Centre for Cardiovascular Research (DZHK), Partner site Göttingen Göttingen Germany
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14
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Rettenmeier C, Maziero D, Qian Y, Stenger VA. A circular echo planar sequence for fast volumetric fMRI. Magn Reson Med 2018; 81:1685-1698. [PMID: 30273963 DOI: 10.1002/mrm.27522] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Revised: 08/03/2018] [Accepted: 08/15/2018] [Indexed: 11/07/2022]
Abstract
PURPOSE To demonstrate a circular EPI (CEPI) sequence as well as a generalized EPI reconstruction for fast fMRI with parallel imaging acceleration. METHODS The CEPI acquisition was constructed using variable readout lengths and maximum ramp sampling as well as blipped-CAIPI z-gradient encoding for simultaneous multislice (SMS) and 3D volumetric imaging. A signal equation model with constant and linear phase terms was used to iteratively reconstruct images with low ghosting. Simulation, phantom, and human imaging experiments including audio/visual fMRI were performed at 3T using a 52-channel coil. RESULTS Application of CEPI gradients with duration of 27 ms covering a 22-cm FOV at a 64 × 64 pixel resolution in SMS and 3D acquisitions resulted in images with comparable quality to those of standard Cartesian EPI. With parallel imaging techniques robust detection of BOLD fMRI activation with temporal sampling down to 275 ms was possible. The high temporal resolution enabled higher activation statistics at a penalty in increased noise and residual aliasing. The un-accelerated 3D acquisition showed large temporal instability compared with a standard 2D acquisition. CONCLUSION Nonuniform sampling and generalized image reconstructions can be applied to EPI acquisitions including those with blipped-CAIPI z gradients. The same gradients can be used for either SMS or 3D acquisitions providing identical coverage.
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Affiliation(s)
- Christoph Rettenmeier
- Department of Medicine, John A. Burns School of Medicine, University of Hawaii, Honolulu, Hawaii
| | - Danilo Maziero
- Department of Medicine, John A. Burns School of Medicine, University of Hawaii, Honolulu, Hawaii
| | - Yongxian Qian
- Department of Radiology, New York University School of Medicine, New York, New York
| | - V Andrew Stenger
- Department of Medicine, John A. Burns School of Medicine, University of Hawaii, Honolulu, Hawaii
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15
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Lingala SG, Zhu Y, Lim Y, Toutios A, Ji Y, Lo WC, Seiberlich N, Narayanan S, Nayak KS. Feasibility of through-time spiral generalized autocalibrating partial parallel acquisition for low latency accelerated real-time MRI of speech. Magn Reson Med 2017; 78:2275-2282. [PMID: 28185301 DOI: 10.1002/mrm.26611] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2016] [Revised: 12/08/2016] [Accepted: 12/27/2016] [Indexed: 12/11/2022]
Abstract
PURPOSE To evaluate the feasibility of through-time spiral generalized autocalibrating partial parallel acquisition (GRAPPA) for low-latency accelerated real-time MRI of speech. METHODS Through-time spiral GRAPPA (spiral GRAPPA), a fast linear reconstruction method, is applied to spiral (k-t) data acquired from an eight-channel custom upper-airway coil. Fully sampled data were retrospectively down-sampled to evaluate spiral GRAPPA at undersampling factors R = 2 to 6. Pseudo-golden-angle spiral acquisitions were used for prospective studies. Three subjects were imaged while performing a range of speech tasks that involved rapid articulator movements, including fluent speech and beat-boxing. Spiral GRAPPA was compared with view sharing, and a parallel imaging and compressed sensing (PI-CS) method. RESULTS Spiral GRAPPA captured spatiotemporal dynamics of vocal tract articulators at undersampling factors ≤4. Spiral GRAPPA at 18 ms/frame and 2.4 mm2 /pixel outperformed view sharing in depicting rapidly moving articulators. Spiral GRAPPA and PI-CS provided equivalent temporal fidelity. Reconstruction latency per frame was 14 ms for view sharing and 116 ms for spiral GRAPPA, using a single processor. Spiral GRAPPA kept up with the MRI data rate of 18ms/frame with eight processors. PI-CS required 17 minutes to reconstruct 5 seconds of dynamic data. CONCLUSION Spiral GRAPPA enabled 4-fold accelerated real-time MRI of speech with a low reconstruction latency. This approach is applicable to wide range of speech RT-MRI experiments that benefit from real-time feedback while visualizing rapid articulator movement. Magn Reson Med 78:2275-2282, 2017. © 2017 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Sajan Goud Lingala
- Ming Hsieh Department of Electrical Engineering, University of Southern California, Los Angeles, California, USA
| | - Yinghua Zhu
- Ming Hsieh Department of Electrical Engineering, University of Southern California, Los Angeles, California, USA
| | - Yongwan Lim
- Ming Hsieh Department of Electrical Engineering, University of Southern California, Los Angeles, California, USA
| | - Asterios Toutios
- Ming Hsieh Department of Electrical Engineering, University of Southern California, Los Angeles, California, USA
| | - Yunhua Ji
- Department of Biomedical Engineering, University of Southern California, Los Angeles, California, USA
| | - Wei-Ching Lo
- Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio, USA
| | - Nicole Seiberlich
- Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio, USA
| | - Shrikanth Narayanan
- Ming Hsieh Department of Electrical Engineering, University of Southern California, Los Angeles, California, USA
| | - Krishna S Nayak
- Ming Hsieh Department of Electrical Engineering, University of Southern California, Los Angeles, California, USA
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16
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Abstract
Heart disease is a worldwide public health problem; assessment of cardiac function is an important part of the diagnosis and management of heart disease. MRI of the heart can provide clinically useful information on cardiac function, although it is still not routinely used in clinical practice, in part because of limited imaging speed. New accelerated methods for performing cardiovascular MRI (CMR) have the potential to provide both increased imaging speed and robustness to CMR, as well as access to increased functional information. In this review, we will briefly discuss the main methods currently employed to accelerate CMR methods, such as parallel imaging, k-t undersampling and compressed sensing, as well as new approaches that extend the idea of compressed sensing and exploit sparsity to provide richer information of potential use in clinical practice.
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Affiliation(s)
- Leon Axel
- Department of Radiology, NYU School of Medicine, New York, NY, USA
| | - Ricardo Otazo
- Department of Radiology, NYU School of Medicine, New York, NY, USA
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17
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Real-time imaging with radial GRAPPA: Implementation on a heterogeneous architecture for low-latency reconstructions. Magn Reson Imaging 2014; 32:747-58. [PMID: 24690453 DOI: 10.1016/j.mri.2014.02.022] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2013] [Revised: 02/11/2014] [Accepted: 02/14/2014] [Indexed: 11/23/2022]
Abstract
Combination of non-Cartesian trajectories with parallel MRI permits to attain unmatched acceleration rates when compared to traditional Cartesian MRI during real-time imaging. However, computationally demanding reconstructions of such imaging techniques, such as k-space domain radial generalized auto-calibrating partially parallel acquisitions (radial GRAPPA) and image domain conjugate gradient sensitivity encoding (CG-SENSE), lead to longer reconstruction times and unacceptable latency for online real-time MRI on conventional computational hardware. Though CG-SENSE has been shown to work with low-latency using a general purpose graphics processing unit (GPU), to the best of our knowledge, no such effort has been made for radial GRAPPA. Radial GRAPPA reconstruction, which is robust even with highly undersampled acquisitions, is not iterative, requiring only significant computation during initial calibration while achieving good image quality for low-latency imaging applications. In this work, we present a very fast, low-latency, reconstruction framework based on a heterogeneous system using multi-core CPUs and GPUs. We demonstrate an implementation of radial GRAPPA that permits reconstruction times on par with or faster than acquisition of highly accelerated datasets in both cardiac and dynamic musculoskeletal imaging scenarios. Acquisition and reconstruction times are reported.
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18
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Duerst Y, Wilm BJ, Dietrich BE, Vannesjo SJ, Barmet C, Schmid T, Brunner DO, Pruessmann KP. Real-time feedback for spatiotemporal field stabilization in MR systems. Magn Reson Med 2014; 73:884-93. [PMID: 24634192 DOI: 10.1002/mrm.25167] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2013] [Revised: 12/21/2013] [Accepted: 01/14/2014] [Indexed: 11/10/2022]
Abstract
PURPOSE MR imaging and spectroscopy require a highly stable, uniform background field. The field stability is typically limited by hardware imperfections, external perturbations, or field fluctuations of physiological origin. The purpose of the present work is to address these issues by introducing spatiotemporal field stabilization based on real-time sensing and feedback control. METHODS An array of NMR field probes is used to sense the field evolution in a whole-body MR system concurrently with regular system operation. The field observations serve as inputs to a proportional-integral controller that governs correction currents in gradient and higher-order shim coils such as to keep the field stable in a volume of interest. RESULTS The feedback system was successfully set up, currently reaching a minimum latency of 20 ms. Its utility is first demonstrated by countering thermal field drift during an EPI protocol. It is then used to address respiratory field fluctuations in a T2 *-weighted brain exam, resulting in substantially improved image quality. CONCLUSION Feedback field control is an effective means of eliminating dynamic field distortions in MR systems. Third-order spatial control at an update time of 100 ms has proven sufficient to largely eliminate thermal and breathing effects in brain imaging at 7 Tesla.
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Affiliation(s)
- Yolanda Duerst
- Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Switzerland
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19
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Goora FG, Colpitts BG, Balcom BJ. Arbitrary magnetic field gradient waveform correction using an impulse response based pre-equalization technique. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2014; 238:70-76. [PMID: 24316188 DOI: 10.1016/j.jmr.2013.11.003] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2013] [Revised: 11/05/2013] [Accepted: 11/08/2013] [Indexed: 06/02/2023]
Abstract
The time-varying magnetic fields used in magnetic resonance applications result in the induction of eddy currents on conductive structures in the vicinity of both the sample under investigation and the gradient coils. These eddy currents typically result in undesired degradations of image quality for MRI applications. Their ubiquitous nature has resulted in the development of various approaches to characterize and minimize their impact on image quality. This paper outlines a method that utilizes the magnetic field gradient waveform monitor method to directly measure the temporal evolution of the magnetic field gradient from a step-like input function and extracts the system impulse response. With the basic assumption that the gradient system is sufficiently linear and time invariant to permit system theory analysis, the impulse response is used to determine a pre-equalized (optimized) input waveform that provides a desired gradient response at the output of the system. An algorithm has been developed that calculates a pre-equalized waveform that may be accurately reproduced by the amplifier (is physically realizable) and accounts for system limitations including system bandwidth, amplifier slew rate capabilities, and noise inherent in the initial measurement. Significant improvements in magnetic field gradient waveform fidelity after pre-equalization have been realized and are summarized.
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Affiliation(s)
- Frédéric G Goora
- Department of Electrical and Computer Engineering, University of New Brunswick, 15 Dineen Drive, Fredericton, NB E3B 5A3, Canada; MRI Centre, Department of Physics, University of New Brunswick, 8 Bailey Drive, Fredericton, NB E3B 5A3, Canada.
| | - Bruce G Colpitts
- Department of Electrical and Computer Engineering, University of New Brunswick, 15 Dineen Drive, Fredericton, NB E3B 5A3, Canada.
| | - Bruce J Balcom
- MRI Centre, Department of Physics, University of New Brunswick, 8 Bailey Drive, Fredericton, NB E3B 5A3, Canada.
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20
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Shin T, Lustig M, Nishimura DG, Hu BS. Rapid single-breath-hold 3D late gadolinium enhancement cardiac MRI using a stack-of-spirals acquisition. J Magn Reson Imaging 2013; 40:1496-502. [PMID: 24243575 DOI: 10.1002/jmri.24494] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2013] [Accepted: 10/08/2013] [Indexed: 11/11/2022] Open
Abstract
PURPOSE To develop a rapid single-breath-hold 3D late gadolinium enhancement (LGE) magnetic resonance imaging (MRI) method, and demonstrate its feasibility in cardiac patients. MATERIALS AND METHODS An inversion recovery dual-density 3D stack-of-spirals imaging sequence was developed. The spiral acquisition was 2-fold accelerated by self-consistent parallel imaging reconstruction (SPIRiT), which resulted in a total scan time of 12 heartbeats. Field map-based linear off-resonance correction was incorporated to the SPIRiT reconstruction. The 3D spiral LGE scans were performed in 15 patients who were referred for clinically ordered cardiac MR examinations that included the standard 2D multislice LGE imaging. Image sharpness and overall quality were qualitatively assessed based on 5-point scales. RESULTS Scar-induced hyper-LGE was identified in 4 out of the 15 patients by both 3D spiral and 2D multislice LGE tests. On average over all datasets (n = 15), the image sharpness scores were 3.9 (3D spiral) and 4.0 (2D multislice), and the image quality scores were 4.1 (3D spiral) and 4.0 (2D multislice) with no significant difference in both metrics (paired t-test; P > 0.1). The average scar contrast enhancement ratios were 0.72 and 0.75 in 3D and 2D images, respectively (n = 4). The average difference of fractional scar volumes measured in 3D and 2D images was 4.3% (n = 3). CONCLUSION Stack-of-spiral acquisition combined with non-Cartesian SPIRiT parallel imaging enables rapid 3D LGE MRI in a 12 heartbeat-long breath-hold.J.
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Affiliation(s)
- Taehoon Shin
- Department of Electrical Engineering, Stanford University, Stanford, California, USA
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21
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Krämer M, Herrmann KH, Biermann J, Reichenbach JR. Retrospective reconstruction of cardiac cine images from golden-ratio radial MRI using one-dimensional navigators. J Magn Reson Imaging 2013; 40:413-22. [PMID: 24895008 DOI: 10.1002/jmri.24364] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2013] [Accepted: 08/07/2013] [Indexed: 12/24/2022] Open
Abstract
PURPOSE To demonstrate radial golden-ratio-based cardiac cine imaging by using interspersed one-dimensional (1D) navigators. MATERIALS AND METHODS The 1D navigators were interspersed into the acquisition of radial spokes which were continuously rotated by an angle increment based on the golden-ratio. Performing correlation analysis between the 1D navigator projections, time points corresponding to the same cardiac motion phases were automatically identified and used to combine retrospectively golden-ratio rotated radial spokes from multiple data windows. Data windows were shifted consecutively for dynamic reconstruction of different cardiac motion frames. Experiments were performed during a single breathhold. By artificially reducing the amount of input data, signal-to-noise ratio (SNR) and contrast-to-noise ratio (CNR) as well as artifact level was evaluated for different breathhold durations. RESULTS Analysis of the 1D navigator data provided a detailed correlation function revealing cardiac motion over time. Imaging results were comparable to images reconstructed based on a timely synchronized ECG. Cardiac cine images with a low artifact level and good image quality in terms of SNR and CNR were reconstructed from volunteer data achieving a CNR between the myocardium and the left ventricular cavity of 50 for the longest breathhold duration of 26 s. CNR maintained a value higher than 30 for acquisition times as low as 10 s. CONCLUSION Combining radial golden-ratio-based imaging with an intrinsic navigator is a promising and robust method for performing high quality cardiac cine imaging.
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Affiliation(s)
- Martin Krämer
- Medical Physics Group, Institute of Diagnostic and Interventional Radiology I, Jena University Hospital - Friedrich Schiller University Jena, Germany
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22
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Lee D, Santos JM, Hu BS, Pauly JM, Kerr AB. Reducing artifacts in one-dimensional Fourier velocity encoding for fast and pulsatile flow. Magn Reson Med 2012; 68:1876-85. [PMID: 22457248 PMCID: PMC3499673 DOI: 10.1002/mrm.24212] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2011] [Revised: 12/27/2011] [Accepted: 01/20/2012] [Indexed: 11/08/2022]
Abstract
When evaluating the severity of valvular stenosis, the peak velocity of the blood flow is routinely used to estimate the transvalvular pressure gradient. One-dimensional Fourier velocity encoding effectively detects the peak velocity with an ungated time series of spatially resolved velocity spectra in real time. However, measurement accuracy can be degraded by the pulsatile and turbulent nature of stenotic flow and the existence of spatially varying off-resonance. In this work, we investigate the feasibility of improving the peak velocity detection capability of one-dimensional Fourier velocity encoding for stenotic flow using a novel echo-shifted interleaved readout combined with a variable-density circular k-space trajectory. The shorter echo and readout times of the echo-shifted interleaved acquisitions are designed to reduce sensitivity to off-resonance. Preliminary results from limited phantom and in vivo results also indicate that some artifacts from pulsatile flow appear to be suppressed when using this trajectory compared to conventional single-shot readouts, suggesting that peak velocity detection may be improved. The efficiency of the new trajectory improves the temporal and spatial resolutions. To realize the proposed readout, a novel multipoint-traversing algorithm is introduced for flexible and automated gradient-waveform design.
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Affiliation(s)
- Daeho Lee
- Magnetic Resonance Systems Research Laboratory, Department of Electrical Engineering, Stanford University, Stanford, California, USA.
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23
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Feng L, Srichai MB, Lim RP, Harrison A, King W, Adluru G, Dibella EVR, Sodickson DK, Otazo R, Kim D. Highly accelerated real-time cardiac cine MRI using k-t SPARSE-SENSE. Magn Reson Med 2012; 70:64-74. [PMID: 22887290 DOI: 10.1002/mrm.24440] [Citation(s) in RCA: 157] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2012] [Revised: 06/20/2012] [Accepted: 07/03/2012] [Indexed: 01/19/2023]
Abstract
For patients with impaired breath-hold capacity and/or arrhythmias, real-time cine MRI may be more clinically useful than breath-hold cine MRI. However, commercially available real-time cine MRI methods using parallel imaging typically yield relatively poor spatio-temporal resolution due to their low image acquisition speed. We sought to achieve relatively high spatial resolution (∼2.5 × 2.5 mm(2)) and temporal resolution (∼40 ms), to produce high-quality real-time cine MR images that could be applied clinically for wall motion assessment and measurement of left ventricular function. In this work, we present an eightfold accelerated real-time cardiac cine MRI pulse sequence using a combination of compressed sensing and parallel imaging (k-t SPARSE-SENSE). Compared with reference, breath-hold cine MRI, our eightfold accelerated real-time cine MRI produced significantly worse qualitative grades (1-5 scale), but its image quality and temporal fidelity scores were above 3.0 (adequate) and artifacts and noise scores were below 3.0 (moderate), suggesting that acceptable diagnostic image quality can be achieved. Additionally, both eightfold accelerated real-time cine and breath-hold cine MRI yielded comparable left ventricular function measurements, with coefficient of variation <10% for left ventricular volumes. Our proposed eightfold accelerated real-time cine MRI with k-t SPARSE-SENSE is a promising modality for rapid imaging of myocardial function.
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Affiliation(s)
- Li Feng
- Department of Radiology, The Bernard and Irene Schwartz Center for Biomedical Imaging, New York University School of Medicine, New York, New York 10016, USA.
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24
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Gensler D, Fidler F, Ehses P, Warmuth M, Reiter T, Düring M, Ritter O, Ladd ME, Quick HH, Jakob PM, Bauer WR, Nordbeck P. MR safety: Fast T
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thermometry of the RF-induced heating of medical devices. Magn Reson Med 2012; 68:1593-9. [PMID: 22287286 DOI: 10.1002/mrm.24171] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2011] [Revised: 12/01/2011] [Accepted: 12/29/2011] [Indexed: 11/11/2022]
Affiliation(s)
- D Gensler
- Research Center for Magnetic Resonance Bavaria e.V., Würzburg, Germany.
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25
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Derbyshire JA, Herzka DA, McVeigh ER, Lederman RJ. Efficient implementation of hardware-optimized gradient sequences for real-time imaging. Magn Reson Med 2010; 64:1814-20. [PMID: 20878764 PMCID: PMC3399692 DOI: 10.1002/mrm.22211] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2008] [Accepted: 08/28/2009] [Indexed: 11/08/2022]
Abstract
This work improves the performance of interactive real-time imaging with balanced steady-state free precession. The method employs hardware-optimized gradient pulses, together with a novel phase-encoding strategy that simplifies the design and implementation of the optimized gradient waveforms. In particular, the waveforms for intermediate phase-encode steps are obtained by simple linear combination, rather than separate optimized waveform calculations. Gradient waveforms are redesigned in real time as the scan plane is manipulated, and the resulting sequence operates at the specified limits of the MRI gradient subsystem for each new scan-plane orientation. The implementation provides 14-25% improvement in the sequence pulse repetition time over the vendor-supplied interactive real-time imaging sequence for similar scan parameters on our MRI scanner.
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Affiliation(s)
- J Andrew Derbyshire
- Translational Medicine Branch, Division of Intramural Research, National Heart, Lung, and Blood Institute, National Institutes of Health, DHHS, Bethesda, Maryland 20892-1061, USA.
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26
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Liu J, Wieben O, Jung Y, Samsonov AA, Reeder SB, Block WF. Single breathhold cardiac CINE imaging with multi-echo three-dimensional hybrid radial SSFP acquisition. J Magn Reson Imaging 2010; 32:434-40. [PMID: 20677274 DOI: 10.1002/jmri.22269] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
PURPOSE To achieve single breathhold whole heart cardiac CINE imaging with improved spatial resolution and temporal resolution by using a multi-echo three-dimensional (3D) hybrid radial SSFP acquisition. MATERIALS AND METHODS Multi-echo 3D hybrid radial SSFP acquisitions were used to acquire cardiac CINE imaging within a single breathhold. An optimized interleaving scheme was developed for view ordering throughout the cardiac cycle. RESULTS Whole heart short axis views were acquired with a spatial resolution of 1.3 x 1.3 x 8.0 mm(3) and temporal resolution of 45 ms, within a single 17 s breathhold. The technique was validated on eight healthy volunteers by measuring the left ventricular volume throughout the cardiac cycle and comparing with the conventional 2D multiple breathhold technique. The left ventricle functional measurement bias of our proposed 3D technique from the conventional 2D technique: end diastolic volume -3.3 mL +/- 13.7 mL, end systolic volume 1.4 mL +/- 6.1 mL, and ejection fraction -1.7% +/- 4.3%, with high correlations 0.94, 0.97, and 0.91, accordingly. CONCLUSION A multi-echo 3D hybrid radial SSFP acquisition was developed to allow for a whole heart cardiac CINE exam in a single breathhold. Cardiac function measurements in volunteers compared favorably with the standard multiple breathhold exams.
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Affiliation(s)
- Jing Liu
- Department of Electrical and Computer Engineering, University of Wisconsin-Madison, Wisconsin, USA.
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27
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Tsao J. Ultrafast imaging: Principles, pitfalls, solutions, and applications. J Magn Reson Imaging 2010; 32:252-66. [DOI: 10.1002/jmri.22239] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
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Zhang S, Block KT, Frahm J. Magnetic resonance imaging in real time: Advances using radial FLASH. J Magn Reson Imaging 2009; 31:101-9. [PMID: 19938046 DOI: 10.1002/jmri.21987] [Citation(s) in RCA: 98] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Affiliation(s)
- Shuo Zhang
- Biomedizinische NMR Forschungs GmbH am Max-Planck-Institut für biophysikalische Chemie, Göttingen, Germany
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Haider CR, Hu HH, Campeau NG, Huston J, Riederer SJ. 3D high temporal and spatial resolution contrast-enhanced MR angiography of the whole brain. Magn Reson Med 2009; 60:749-60. [PMID: 18727101 DOI: 10.1002/mrm.21675] [Citation(s) in RCA: 80] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Sensitivity encoding (SENSE) and partial Fourier techniques have been shown to reduce the acquisition time and provide high diagnostic quality images. However, for time-resolved acquisitions there is a need for both high temporal and spatial resolution. View sharing can be used to provide an increased frame rate but at the cost of acquiring spatial frequencies over a duration longer than a frame time. In this work we hypothesize that a CArtesian Projection Reconstruction-like (CAPR) technique in combination with 2D SENSE, partial Fourier, and view sharing can provide 1-2 mm isotropic resolution with sufficient temporal resolution to distinguish intracranial arterial and venous phases of contrast passage in whole-brain angiography. In doing so, the parameter of "temporal footprint" is introduced as a descriptor for characterizing and comparing time-resolved view-shared pulse sequences. It is further hypothesized that short temporal footprint sequences have higher temporal fidelity than similar sequences with longer temporal footprints. The tradeoff of temporal footprint and temporal acceleration is presented and characterized in numerical simulations. Results from 11 whole-brain contrast-enhanced MR angiography studies with the new method with SENSE acceleration factors R = 4 and 5.3 are shown to provide images of comparable or higher diagnostic quality than the unaccelerated reference.
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Affiliation(s)
- Clifton R Haider
- MR Research Laboratory, Mayo Clinic, Rochester, Minnesota 55905, USA
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Draper CE, Santos JM, Kourtis LC, Besier TF, Fredericson M, Beaupre GS, Gold GE, Delp SL. Feasibility of using real-time MRI to measure joint kinematics in 1.5T and open-bore 0.5T systems. J Magn Reson Imaging 2008; 28:158-66. [PMID: 18581329 DOI: 10.1002/jmri.21413] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
PURPOSE To test the feasibility and accuracy of measuring joint motion with real-time MRI in a 1.5T scanner and in a 0.5T open-bore scanner and to assess the dependence of measurement accuracy on movement speed. MATERIALS AND METHODS We developed an MRI-compatible motion phantom to evaluate the accuracy of tracking bone positions with real-time MRI for varying movement speeds. The measurement error was determined by comparing phantom positions estimated from real-time MRI to those measured using optical motion capture techniques. To assess the feasibility of measuring in vivo joint motion, we calculated 2D knee joint kinematics during knee extension in six subjects and compared them to previously reported measurements. RESULTS Measurement accuracy decreased as the phantom's movement speed increased. The measurement accuracy was within 2 mm for velocities up to 217 mm/s in the 1.5T scanner and 38 mm/s in the 0.5T scanner. We measured knee joint kinematics with small intraobserver variation (variance of 0.8 degrees for rotation and 3.6% of patellar width for translation). CONCLUSION Our results suggest that real-time MRI can be used to measure joint kinematics when 2 mm accuracy is sufficient. They can also be used to prescribe the speed of joint motion necessary to achieve certain measurement accuracy.
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Affiliation(s)
- Christine E Draper
- Department of Mechanical Engineering, Stanford University, 318 Campus Drive, Stanford, CA 94305, USA
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Abstract
This article describes the considerable technical achievements that have been made in MR imaging in the evaluation of pediatric patients. The latest techniques in improving signal intensity, resolution, and speed are discussed. The multitude of new options for pediatric MR imaging are illustrated, including higher field strength imaging, multi-channel coil technology coupled with parallel imaging, and new pulse sequence designs. Several future directions in the field of pediatric body and musculoskeletal imaging also are highlighted.
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3-T navigator parallel-imaging coronary MR angiography: targeted-volume versus whole-heart acquisition. AJR Am J Roentgenol 2008; 191:38-42. [PMID: 18562722 DOI: 10.2214/ajr.07.2503] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
OBJECTIVE The purpose of this study was to compare whole-heart acquisition with targeted-volume acquisition in 3-T navigator coronary MR angiography with parallel imaging. SUBJECTS AND METHODS The right and left coronary arteries of 20 subjects were imaged with axial whole-heart acquisition and two oblique targeted-volume acquisitions. RESULTS Both whole-heart and targeted-volume acquisitions were completed with similar navigator efficiencies ( approximately 50%) and depicted similar coronary artery diameters ( approximately 3 mm) (p >or= 0.06). The lengths of the coronary arteries were not significantly different (p = 0.07-0.45) for the whole-heart and targeted-volume approaches. Depiction of the sharper coronary arteries (p <or= 0.04) and overall image quality (p < 0.02) were better with the targeted-volume approach. CONCLUSION For current 3-T navigator parallel-imaging coronary MR angiography, targeted-volume acquisition yields sharper coronary images than does whole-heart acquisition.
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Nguyen PK, Meyer C, Engvall J, Yang P, McConnell MV. Noninvasive assessment of coronary vasodilation using cardiovascular magnetic resonance in patients at high risk for coronary artery disease. J Cardiovasc Magn Reson 2008; 10:28. [PMID: 18513419 PMCID: PMC2467421 DOI: 10.1186/1532-429x-10-28] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2008] [Accepted: 05/30/2008] [Indexed: 01/12/2023] Open
Abstract
BACKGROUND Impaired coronary vasodilation to both endothelial-dependent and endothelial-independent stimuli have been associated with atherosclerosis. Direct measurement of coronary vasodilation using x-ray angiography or intravascular ultrasound is invasive and, thus, not appropriate for asymptomatic patients or for serial follow-up. In this study, high-resolution coronary cardiovascular magnetic resonance (CMR) was used to investigate the vasodilatory response to nitroglycerine (NTG) of asymptomatic patients at high risk for CAD. METHODS A total of 46 asymptomatic subjects were studied: 13 high-risk patients [8 with diabetes mellitus (DM), 5 with end stage renal disease (ESRD)] and 33 age-matched controls. Long-axis and cross-sectional coronary artery images were acquired pre- and 5 minutes post-sublingual NTG using a sub-mm-resolution multi-slice spiral coronary CMR sequence. Coronary cross sectional area (CSA) was measured on pre- and post-NTG images and % coronary vasodilation was calculated. RESULTS Patients with DM and ESRD had impaired coronary vasodilation to NTG compared to age-matched controls (17.8 +/- 7.3% vs. 25.6 +/- 7.1%, p = 0.002). This remained significant for ESRD patients alone (14.8 +/- 7.7% vs. 25.6 +/- 7.1%; p = 0.003) and for DM patients alone (19.8 +/- 6.3% vs. 25.6 +/- 7.1%; p = 0.049), with a non-significant trend toward greater impairment in the ESRD vs. DM patients (14.8 +/- 7.7% vs. 19.8 +/- 6.3%; p = 0.23). CONCLUSION Noninvasive coronary CMR demonstrates impairment of coronary vasodilation to NTG in high-risk patients with DM and ESRD. This may provide a functional indicator of subclinical atherosclerosis and warrants clinical follow up to determine prognostic significance.
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Affiliation(s)
- Patricia K Nguyen
- Department of Medicine, Division of Cardiovascular Medicine, Stanford University, Stanford, USA
| | - Craig Meyer
- Department of Biomedical Engineering, University of Virginia, Virginia, USA
| | - Jan Engvall
- Department of Clinical Physiology, Linköping Heart Center, Linköping, Sweden
| | - Phillip Yang
- Department of Medicine, Division of Cardiovascular Medicine, Stanford University, Stanford, USA
| | - Michael V McConnell
- Department of Medicine, Division of Cardiovascular Medicine, Stanford University, Stanford, USA
- Department of Electrical Engineering, Stanford University, Stanford, USA
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Abstract
The concentric rings two-dimensional (2D) k-space trajectory provides an alternative way to sample polar data. By collecting 2D k-space data in a series of rings, many unique properties are observed. The concentric rings are inherently centric-ordered, provide a smooth weighting in k-space, and enable shorter total scan times. Due to these properties, the concentric rings are well-suited as a readout trajectory for magnetization-prepared studies. When non-Cartesian trajectories are used for MRI, off-resonance effects can cause blurring and degrade the image quality. For the concentric rings, off-resonance blur can be corrected by retracing rings near the center of k-space to obtain a field map with no extra excitations, and then employing multifrequency reconstruction. Simulations show that the concentric rings exhibit minimal effects due to T(2) (*) modulation, enable shorter scan times for a Nyquist-sampled dataset than projection-reconstruction imaging or Cartesian 2D Fourier transform (2DFT) imaging, and have more spatially distributed flow and motion properties than Cartesian sampling. Experimental results show that off-resonance blurring can be successfully corrected to obtain high-resolution images. Results also show that concentric rings effectively capture the intended contrast in a magnetization-prepared sequence.
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Affiliation(s)
- Hochong H Wu
- Magnetic Resonance Systems Research Laboratory, Department of Electrical Engineering, Stanford University, Stanford, California, USA.
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Wu Y, Wieben O, Mistretta CA, Korosec FR. Evaluation of temporal and spatial characteristics of 2D HYPR processing using simulations. Magn Reson Med 2008; 59:1090-8. [DOI: 10.1002/mrm.21564] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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36
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Moche M, Trampel R, Kahn T, Busse H. Navigation concepts for MR image-guided interventions. J Magn Reson Imaging 2008; 27:276-91. [DOI: 10.1002/jmri.21262] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
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Pulse sequences and system interfaces for interventional and real-time MRI. J Magn Reson Imaging 2008; 27:267-75. [DOI: 10.1002/jmri.21268] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Liang D, Lam EY, Fung GSK. A least squares quantization table method for direct reconstruction of MR images with non-Cartesian trajectory. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2007; 188:141-50. [PMID: 17646119 DOI: 10.1016/j.jmr.2007.06.013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2006] [Revised: 06/27/2007] [Accepted: 06/27/2007] [Indexed: 05/16/2023]
Abstract
The direct Fourier transform method is a straightforward solution with high accuracy for reconstructing magnetic resonance (MR) images from nonuniformly sampled k-space data, given that the optimal density compensation function is selected and the underlying magnetic field is sufficiently uniform. The computation however is very time-consuming, making it impractical especially for large-size images. In this paper, the least squares quantization table (LSQT) method is proposed to accelerate the direct Fourier transform computation, similar to the recently proposed methods such as using look-up table (LUT) or equal-phase-line (EPL). With LSQT, all the image pixels are first classified into several groups where the Lloyd-Max quantization scheme is used to ensure the minimal classification error. The representative value of each group is stored in a small-size LSQT in advance to reduce the computational load. The pixels in the same group receive the same contribution, which is calculated only once for each group instead of for each pixel, resulting in the reduction of computation because the number of groups is far smaller than the number of pixels. Finally, each image pixel is mapped into the nearest group and its representative value is used to reconstruct the image. The experimental results show that the LSQT method requires far smaller memory size than the LUT method and fewer multiplication operations than the LUT and EPL methods. Moreover, the LSQT method can perform large-size reconstructions that achieve comparable or higher accuracy as compared to the EPL and gridding methods when the appropriate parameters are given. The inherent parallel structure also makes the LSQT method easily adaptable to a multiprocessor system.
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Affiliation(s)
- Dong Liang
- Department of Electrical and Electronic Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong
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39
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Cieślar K, Alsaid H, Stupar V, Gaillard S, Canet-Soulas E, Fissoune R, Crémillieux Y. Measurement of nonlinear pO2 decay in mouse lungs using 3He-MRI. NMR IN BIOMEDICINE 2007; 20:383-91. [PMID: 17451167 DOI: 10.1002/nbm.1124] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Spatial and temporal variations in oxygen partial pressure (pO(2)) during breath-hold can be exploited to obtain important regional parameters of lung function. In the course of apnea, the oxygen concentration is known to decay exponentially. Therefore, the initial pO(2) (p(0)) can be used to represent local ventilation, and the oxygen depletion time constant can characterize perfusion. The protocol, based on a nonlinear model of pO(2) decay, was validated in six healthy mice. Parametric maps of p(0) and oxygen depletion time constant were obtained for pure (3)He and (3)He/air mixture. The mean measured values of p(0) were 77 +/- 9 mbar for the pure (3)He insufflation and 107 +/- 5 mbar for (3)He/air mixture, in agreement with the predefined p(0) values: 75 +/- 15 mbar and 123 +/- 15 mbar, respectively. The mean measured oxygen depletion time constants were 6.5 +/- 0.2 s for pure (3)He and 7.1 +/- 0.8 s for the (3)He/air mixture, in agreement with physiology.
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40
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Cieślar K, Stupar V, Canet-Soulas E, Gaillard S, Crémillieux Y. Alveolar oxygen partial pressure and oxygen depletion rate mapping in rats using 3He ventilation imaging. Magn Reson Med 2007; 57:423-30. [PMID: 17152086 DOI: 10.1002/mrm.21110] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
A hyperpolarized 3He ventilation imaging protocol was implemented to assess alveolar pO2 values and the oxygen depletion rate in rats. The imaging protocol, which is based on spiral k-space sampling, was designed to acquire a high signal-to-noise ratio (SNR) T1-weighted ventilation series of images in a single breath-hold. Simulations were performed to estimate the accuracy and dependence of the pO2 imaging protocol on the image SNR and the RF flip-angle determination. The imaging protocol was validated in vitro in phantoms and in vivo in rats. Imaging sessions were carried out for different inhaled O2 concentrations ranging from 20% to 40%. Parametric maps of alveolar pO2 and oxygen depletion rate were generated from the series of images. For each investigated animal, the differences in measured alveolar pO2 values are in agreement with the changes in inhaled O2 concentration. The oxygen depletion rates, ranging between 0.7 and 8.0 mbar s-1, are in close agreement with the published values for healthy rats.
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de la Pena E, Nguyen PK, Nayak KS, Yang PC, Rosenthal DN, Hu BS, Pauly JM, McConnell MV. Real-time color-flow CMR in adults with congenital heart disease. J Cardiovasc Magn Reson 2007; 8:809-15. [PMID: 17060103 PMCID: PMC4634869 DOI: 10.1080/10976640600777728] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
Abstract
CMR is valuable in the evaluation of congenital heart disease (CHD). Traditional flow imaging sequences involve cardiac and respiratory gating, increasing scan time and susceptibility to arrhythmias. We studied a real-time color-flow CMR system for the detection of flow abnormalities in 13 adults with CHD. All 16 congenital flow abnormalities previously detected by echocardiography were visualized using color-flow CMR, including atrial septal defects (n = 4), ventricular septal defects (n = 9), aortic coarctation (n = 1), Blalock-Taussig shunt (n = 1) and Fontan shunt (n = 1). Real-time color-flow CMR can identify intra- and extra-cardiac flow abnormalities in adults with congenital heart disease.
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Affiliation(s)
- Erasmo de la Pena
- Division of Cardiovascular Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, California, USA
| | - Patricia K. Nguyen
- Division of Cardiovascular Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, California, USA
| | - Krishna S. Nayak
- Department of Electrical Engineering, University of Southern California, Los Angeles, California, USA
| | - Phillip C. Yang
- Division of Cardiovascular Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, California, USA
| | - David N. Rosenthal
- Division of Cardiology, Department of Pediatrics, Stanford University School of Medicine, Stanford, California, USA
| | - Bob S. Hu
- Department of Electrical Engineering, Stanford University, Stanford, California, USA
| | - John M. Pauly
- Department of Electrical Engineering, Stanford University, Stanford, California, USA
| | - Michael V. McConnell
- Division of Cardiovascular Medicine, Department of Medicine, Stanford University School of Medicine, Stanford, California, USA
- Department of Electrical Engineering, Stanford University, Stanford, California, USA
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42
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Cardiovascular Magnetic Resonance Imaging. CARDIOVASCULAR MEDICINE 2007. [DOI: 10.1007/978-1-84628-715-2_7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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Prieto C, Batchelor PG, Hill DLG, Hajnal JV, Guarini M, Irarrazaval P. Reconstruction of undersampled dynamic images by modeling the motion of object elements. Magn Reson Med 2007; 57:939-49. [PMID: 17457881 DOI: 10.1002/mrm.21222] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Dynamic MRI is restricted due to the time required to obtain enough data to reconstruct the image sequence. Several undersampled reconstruction techniques have been proposed to reduce the acquisition time. In most of these techniques the nonacquired data are recovered by modeling the temporal information as varying pixel intensities represented in time or in temporal frequencies. Here we propose a new approach that recovers the missing data through a motion estimation of the object elements ("obels," or pieces of tissue) of the image. This method assumes that an obel displacement through the sequence has lower bandwidth than fluctuations in pixel intensities caused by the motion, and thus it can be modeled with fewer parameters. Preliminary results show that this technique can effectively reconstruct (with root mean square (RMS) errors below 4%) cardiac images and joints with undersampling factors of 8 and 4, respectively. Moreover, in the reconstruction process an approximation of the motion vectors is obtained for each obel, which can be used to quantify dynamic information. In this method the motion need not be confined to a part of the field of view (FOV) or to a portion of the temporal frequency. It is appropriate for dynamic studies in which the obels' motion model has fewer parameters than the number of acquired samples.
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Affiliation(s)
- Claudia Prieto
- Departamento de Ingeniería Eléctrica, Pontificia Universidad Católica de Chile, Santiago, Chile
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Park JB, Hu BS, Conolly SM, Nayak KS, Nishimura DG. Rapid cardiac-output measurement with ungated spiral phase contrast. Magn Reson Med 2006; 56:432-8. [PMID: 16802317 DOI: 10.1002/mrm.20970] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
An ungated spiral phase-contrast (USPC) method was used to measure cardiac output (CO) rapidly and conveniently. The USPC method, which was originally designed for small peripheral vessels, was modified to assess CO by measuring flow in the ascending aorta (AA). The modified USPC used a 12-interleaf spiral trajectory to acquire full-image data every 283 ms with 2-mm spatial resolution. The total scan time was 5 s. For comparison, a triggered real-time (TRT) method was used to indirectly calculate CO by measuring left-ventricular (LV) volume. The USPC and TRT measurements from all normal volunteers agreed. In a patient with patent ductus arteriosus (PDA), high CO was measured with USPC, which agreed well with the invasive cardiac-catheterized measurement. In normal volunteers, CO dropped about 20-30% with Valsalva maneuvering, and increased about 100% after exercise. Continuous 28-s cycling between Valsalva maneuvering and free-breathing showed that USPC can temporally resolve physiological CO changes.
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Affiliation(s)
- Jong B Park
- Magnetic Resonance Systems Research Laboratory, Department of Electrical Engineering, Stanford University, Stanford, California, USA.
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45
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Brodsky E, Isaacs D, Grist TM, Block WF. 3D fluoroscopy with real-time 3D non-cartesian phased-array contrast-enhanced MRA. Magn Reson Med 2006; 56:247-54. [PMID: 16791862 DOI: 10.1002/mrm.20957] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
For optimized CE-MRA of the chest and abdomen, the scan time and breath-hold must be coordinated with the arrival of contrast. A 3D fluoroscopy system is demonstrated that performs real-time 3D projection reconstruction acquisition, reconstruction, and visualization using only the standard scanner hardware and operator console workstation. Unlike 2D fluorotriggering techniques, no specification of a monitoring slab or careful placement of the imaging volume is required. 3DPR data are acquired continuously throughout the examination using an eight-channel receiver and 1 s interleaved subframes. The data are reconstructed using 1 s segments for real-time monitoring with 0.8-cm isotropic spatial resolution over the entire torso, allowing full-volume axial, coronal, and sagittal MIPs to be displayed simultaneously with minimal latency. The system later uses the same scan data to generate high-spatial-resolution time-resolved sequences of the breath-hold interval. The 3D fluoroscopy system was validated on phantoms and human volunteers.
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Affiliation(s)
- Ethan Brodsky
- Department of Electrical and Computer Engineering, University of Wisconsin-Madison, Madison, Wisconsin 53792-3252, USA.
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46
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Zuo J, Bolding M, Twieg DB. Validation of V-SS-PARSE for single-shot flow measurement. Magn Reson Imaging 2006; 25:335-40. [PMID: 17371722 PMCID: PMC2034512 DOI: 10.1016/j.mri.2006.09.010] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2006] [Accepted: 09/21/2006] [Indexed: 11/17/2022]
Abstract
As a variant of Single-Shot Parameter Assessment by Retrieval from Signal Encoding, Velocity Single-Shot Parameter Assessment by Retrieval from Signal Encoding, a single-shot imaging method, has been developed to realize fast and straightforward flow quantification by solving inverse problems. A robust signal model, including its local magnetization and its phase evolution during signaling (resulting in a more precise representation of the sampled signal) is described here. Magnitude, velocity, relaxation rate and frequency information can be retrieved without any extra reference image acquisitions, as demonstrated by phantom studies. In the presence of stationary background, retrieved magnitude maps and velocity maps show results comparable to those obtained by phase-contrast methods (r>.99, P=.005), even with brief single-shot 70-ms acquisition.
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Affiliation(s)
- Jin Zuo
- Musculoskeletal and Quantitative Imaging Research (MQIR), Department of Radiology, University of California-San Francisco, San Francisco, CA 94158-2520, USA.
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Al-Kwifi O, Stainsby J, Foltz WD, Sussman MS, Huang Y, Wright GA. Characterizing coronary motion and its effect on MR coronary angiography—Initial experience. J Magn Reson Imaging 2006; 24:842-50. [PMID: 16929527 DOI: 10.1002/jmri.20697] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE To characterize coronary artery motion as a prescan procedure to select the optimum scan setting that will produce high-resolution images. MATERIALS AND METHODS A 2D real-time scan was used to image the major coronary arteries during breath-holding and free-breathing conditions. With the use of the 2D images, motion displacement of each artery was measured along three axes. Motion data obtained from a computer simulation were used to estimate point-spread functions (PSFs) associated with different high-resolution spiral acquisition strategies, including real-time, cardiac-gated, and respiratory-gated acquisitions. The simulation output determined the optimum acquisition and scan parameters that would produce the highest-spatial-resolution images of the coronary arteries. The effects of heart rate (HR), extended breath-holding, and number of slices per heart cycle were also investigated. RESULTS Substantial variations in coronary motion occur among individuals, which directly influences the optimum parameters for a high-resolution scan. Lower HRs and longer breath-holds yield substantially increased spatial resolution. The maximum number of slices per heart cycle can also be determined to minimize slice-to-slice distortion. CONCLUSION The results suggest that to obtain high-resolution coronary images, one should perform a prescan coronary-motion characterization for each individual so that the scan parameters can be optimized before data acquisition.
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Affiliation(s)
- Osama Al-Kwifi
- Imaging Research Program, Sunnybrook and Women's College Health Sciences Centre, Toronto, Ontario, Canada.
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48
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Affiliation(s)
- Warren J Manning
- Beth Israel Deaconess Medical Center, Cardiovascular Division, Harvard Medical School, Boston, Massachusetts 02215, USA.
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49
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Abstract
Dynamic changes in cardiac structure and function are usually examined by real-time imaging techniques such as angiography or echocardiography. MRI has many advantages compared with these established cardiac imaging modalities. However, system hardware and software limitations have limited cardiac MRI to gated acquisitions that are lengthy and often result in failed acquisitions and examinations. Recently, MRI has evolved into a technique capable of imaging dynamic processes in real time. Improvements in hardware, pulse sequences, and image reconstruction algorithms have enabled real-time cardiac MRI with high spatial resolution, high temporal resolution, and various types of image contrast without requiring cardiac gating or breath-holding. This article provides an overview of current capability and highlights key technical and clinical advances. The future prospects of real-time cardiac MRI will depend on 1) the development of techniques that further improve signal to noise ratio, contrast, spatial resolution, and temporal resolution, without introducing artifacts; 2) the development of software infrastructure that facilitates rapid interactive examination; and 3) the development and validation of several new clinical assessments.
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Affiliation(s)
- Krishna S Nayak
- Electrical Engineering-Systems, 3740 McClintock Avenue, EEB 406, University of Southern California, Los Angeles, CA 90089-2564, USA.
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50
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Narayan G, Nayak K, Pauly J, Hu B. Single-breathhold, four-dimensional, quantitative assessment of LV and RV function using triggered, real-time, steady-state free precession MRI in heart failure patients. J Magn Reson Imaging 2005; 22:59-66. [PMID: 15971180 DOI: 10.1002/jmri.20358] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
PURPOSE To validate a novel, real-time, steady-state free precession (SSFP), single-breathhold technique for the assessment of left ventricular (LV) and right ventricular (RV) function in heart failure patients. MATERIALS AND METHODS A total of 20 heart failure patients (mean age 59 +/- 17 years) underwent scanning with our new, real-time, spiral SSFP sequence in which each cardiac phase was acquired in 118 msec at a resolution of 1.8 x 1.8 mm. Each cardiac slice (1-cm thick) was automatically advanced based on a cardiac trigger, allowing complete coverage of the heart in a single breathhold. The patients also underwent LV and RV assessment with the gold standard: multiple breathhold, cardiac-gated, segmented k-space strategy. LV and RV end-systolic volume (ESV) and end-diastolic volume (EDV) and LV mass were compared between the two imaging techniques. RESULTS The new real-time strategy was highly concordant with the gold standard technique in the assessment of LVEDV (r = 0.98), LVESV (r = 0.98), RVESV (r = 0.86), RVEDV (r = 0.91), LVMASS (r = 0.95), RVEF (r = 0.70), and LVEF (r = 0.94). The mean bias (95% confidence interval [CI]) for each parameter is LVEDV: 10.6 cc (cm(3)) (3.8-17.4 cc), LVESV: -0.8 cc (-5.3 to 3.7 cc), RVEDV: 3.7 cc (-5.6 to 13.2 cc), RVESV: -3.1 cc (-11.1 to 4.9 cc), LVMASS: 26 g (12.4-39.8 g), RVEF: -2.9% (1.3 to -7.2 %), LVEF: 1.9% (5 to -1.1%). In addition, data acquisition was only nine +/- two seconds with the real-time strategy vs. 312 +/- 41 seconds for the standard technique. CONCLUSION In patients with heart failure, real-time, spiral SSFP allows rapid and accurate assessment of RV and LV function in a single-breath hold. Using the same strategy, increased temporal resolution will allow real-time assessment of cardiac wall motion during stress studies.
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Affiliation(s)
- Girish Narayan
- Division of Cardiovascular Medicine, Stanford University Hospital, Stanford, California 94305, USA.
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