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Wampl S, Körner T, Meyerspeer M, Zaitsev M, Wolf M, Trattnig S, Wolzt M, Bogner W, Schmid AI. A modular motion compensation pipeline for prospective respiratory motion correction of multi-nuclear MR spectroscopy. Sci Rep 2024; 14:10781. [PMID: 38734781 PMCID: PMC11088657 DOI: 10.1038/s41598-024-61403-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 05/06/2024] [Indexed: 05/13/2024] Open
Abstract
Magnetic resonance (MR) acquisitions of the torso are frequently affected by respiratory motion with detrimental effects on signal quality. The motion of organs inside the body is typically decoupled from surface motion and is best captured using rapid MR imaging (MRI). We propose a pipeline for prospective motion correction of the target organ using MR image navigators providing absolute motion estimates in millimeters. Our method is designed to feature multi-nuclear interleaving for non-proton MR acquisitions and to tolerate local transmit coils with inhomogeneous field and sensitivity distributions. OpenCV object tracking was introduced for rapid estimation of in-plane displacements in 2D MR images. A full three-dimensional translation vector was derived by combining displacements from slices of multiple and arbitrary orientations. The pipeline was implemented on 3 T and 7 T MR scanners and tested in phantoms and volunteers. Fast motion handling was achieved with low-resolution 2D MR image navigators and direct implementation of OpenCV into the MR scanner's reconstruction pipeline. Motion-phantom measurements demonstrate high tracking precision and accuracy with minor processing latency. The feasibility of the pipeline for reliable in-vivo motion extraction was shown on heart and kidney data. Organ motion was manually assessed by independent operators to quantify tracking performance. Object tracking performed convincingly on 7774 navigator images from phantom scans and different organs in volunteers. In particular the kernelized correlation filter (KCF) achieved similar accuracy (74%) as scored from inter-operator comparison (82%) while processing at a rate of over 100 frames per second. We conclude that fast 2D MR navigator images and computer vision object tracking can be used for accurate and rapid prospective motion correction. This and the modular structure of the pipeline allows for the proposed method to be used in imaging of moving organs and in challenging applications like cardiac magnetic resonance spectroscopy (MRS) or magnetic resonance imaging (MRI) guided radiotherapy.
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Affiliation(s)
- Stefan Wampl
- High Field MR Center, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria
| | - Tito Körner
- High Field MR Center, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria
| | - Martin Meyerspeer
- High Field MR Center, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria
| | - Maxim Zaitsev
- Division of Medical Physics, Department of Diagnostic and Interventional Radiology, University Medical Center Freiburg, Freiburg, Germany
| | - Marcos Wolf
- High Field MR Center, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria
| | - Siegfried Trattnig
- High Field MR Center, Department of Biomedical Imaging and Image-Guided Therapy, Medical University of Vienna, Vienna, Austria
| | - Michael Wolzt
- Department of Clinical Pharmacology, Medical University of Vienna, Vienna, Austria
| | - Wolfgang Bogner
- High Field MR Center, Department of Biomedical Imaging and Image-Guided Therapy, Medical University of Vienna, Vienna, Austria
| | - Albrecht Ingo Schmid
- High Field MR Center, Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria.
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Gudino N, Littin S. Advancements in Gradient System Performance for Clinical and Research MRI. J Magn Reson Imaging 2023; 57:57-70. [PMID: 36073722 DOI: 10.1002/jmri.28421] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 08/18/2022] [Accepted: 08/18/2022] [Indexed: 02/03/2023] Open
Abstract
In magnetic resonance imaging (MRI), spatial field gradients are applied along each axis to encode the location of the nuclear spin in the frequency domain. During recent years, the development of new gradient technologies has been focused on the generation of stronger and faster gradient fields for imaging with higher spatial and temporal resolution. This benefits imaging methods, such as brain diffusion and functional MRI, and enables human imaging at ultra-high field MRI. In addition to improving gradient performance, new technologies have been presented to minimize peripheral nerve stimulation and gradient-related acoustic noise, both generated by the rapid switching of strong gradient fields. This review will provide a general background on the gradient system and update on the state-of-the-art gradient technology. EVIDENCE LEVEL: 5 TECHNICAL EFFICACY: Stage 1.
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Affiliation(s)
- Natalia Gudino
- MRI Engineering Core, Laboratory of Functional and Molecular Imaging, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland, USA
| | - Sebastian Littin
- Medical Physics, Department of Radiology, Faculty of Medicine, University Freiburg, Freiburg, Germany
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Curcuru AN, Kim T, Yang D, Gach HM. Real-time B 0 compensation during gantry rotation in a 0.35 T MRI-Linac. Med Phys 2022; 49:6451-6460. [PMID: 35906957 DOI: 10.1002/mp.15892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Revised: 07/06/2022] [Accepted: 07/24/2022] [Indexed: 11/08/2022] Open
Abstract
BACKGROUND Rotation of the ferromagnetic gantry of a low magnetic field MRI-Linac was previously demonstrated to cause large center frequency offsets of ±400 Hz. The B0 off-resonances cause image artifacts and imaging isocenter shifts that would preclude MRI-guided arc therapy. PURPOSE The purpose of this study was to measure and compensate for center frequency offsets in real-time during gantry rotation on a 0.35 T MRI-Linac using a free induction decay (FID) navigator. METHODS A nonselective FID navigator was added before each 2D balanced steady-state free precession (bSSFP) cine image acquisition on a 0.35 T MRI-Linac. Images were acquired at 7.3 frames per second. Phase data from the initial FID navigator (while the gantry was stationary) was used as a reference. The phase data from each subsequent FID navigator was used to calculate the real-time B0 off-resonance. The transmitter/receiver phase and the phase accrual over the adjacent image acquisition were adjusted to correct for the center frequency offset. Measurements were performed using a MRI-Linac dynamic phantom prior to and while the gantry rotated clockwise and counterclockwise. Image quality and signal-to-noise ratio were compared between uncorrected and B0 corrected MRIs using a reference image acquired while the gantry was stationary. Four targets in the phantom were manually contoured on the first image frame and an active contouring algorithm was used retrospectively on each subsequent frame to assess image variations and calculate Dice coefficients. Additionally, three healthy volunteers were imaged using the same pulse sequences with and without real-time B0 compensation during gantry rotation. Normalized root mean square errors (nRMSEs) were calculated for the phantom and in vivo to assess the efficacy of the B0 compensation on image quality. The measured center frequency offsets from the volunteer and MRI dynamic phantom navigator data were also compared. The sinusoidal behavior of the center frequency offsets was modeled based on the gantry layout and long time constant eddy currents resulting from gantry rotation. RESULTS The duration of the FID navigator and processing was 4.5 ms. The FID navigator resulted in a ≤11% drop in signal-to-noise ratio (SNR) in the phantom and in vivo (liver). Dice coefficients from the MR-IGRT phantom contour measurements remained above 0.8 with B0 compensation. Without B0 compensation, the Dice coefficients dropped below 0.8 for up to 21% of the time depending on the contour. Real-time B0 compensation resulted in mean reductions in nRMSE of 51% and 16% for the MR-IGRT phantom and in vivo, respectively. Peak-to-peak center frequency offsets ranged from 757 to 773 Hz in the phantom and 670 to 871 Hz in vivo. CONCLUSION Dynamic real-time B0 compensation significantly improved image quality and reduced artifacts during gantry rotation in the phantom and in vivo. However, the FID navigator resulted in a small drop in the imaging duty cycle and SNR. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Austen N Curcuru
- Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri, 63110, USA
| | - Taeho Kim
- Department of Radiation Oncology, Washington University in St. Louis, St. Louis, Missouri, 63110, USA
| | - Deshan Yang
- Departments of Radiation Oncology and Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri, 63110, USA
| | - H Michael Gach
- Departments of Radiation Oncology, Radiology, and Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri, 63110, USA
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Juchem C, Cudalbu C, de Graaf RA, Gruetter R, Henning A, Hetherington HP, Boer VO. B 0 shimming for in vivo magnetic resonance spectroscopy: Experts' consensus recommendations. NMR IN BIOMEDICINE 2021; 34:e4350. [PMID: 32596978 DOI: 10.1002/nbm.4350] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2019] [Revised: 05/14/2020] [Accepted: 05/19/2020] [Indexed: 05/07/2023]
Abstract
Magnetic resonance spectroscopy (MRS) and spectroscopic imaging (MRSI) allow the chemical analysis of physiological processes in vivo and provide powerful tools in the life sciences and for clinical diagnostics. Excellent homogeneity of the static B0 magnetic field over the object of interest is essential for achieving high-quality spectral results and quantitative metabolic measurements. The experimental minimization of B0 variation is performed in a process called B0 shimming. In this article, we summarize the concepts of B0 field shimming using spherical harmonic shimming techniques, specific strategies for B0 homogenization and crucial factors to consider for implementation and use in both brain and body. In addition, experts' recommendations are provided for minimum requirements for B0 shim hardware and evaluation criteria for the primary outcome of adequate B0 shimming for MRS and MRSI, such as the water spectroscopic linewidth.
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Affiliation(s)
- Christoph Juchem
- Departments of Biomedical Engineering and Radiology, Columbia University, New York, New York
| | - Cristina Cudalbu
- Centre d'Imagerie Biomedicale (CIBM), Ecole Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Robin A de Graaf
- Department of Radiology and Biomedical Imaging, Yale University, New Haven, Connecticut
| | - Rolf Gruetter
- Laboratory for Functional and Metabolic Imaging, Center for Biomedical Imaging, Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland
| | - Anke Henning
- Advanced Imaging Research Center, University of Texas Southwestern Medical Center, Dallas, Texas
- Max Planck Institute for Biological Cybernetics, Tuebingen, Germany
| | | | - Vincent O Boer
- Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Hvidovre, Hvidovre, Denmark
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van Houtum Q(, Mohamed Hoesein F(, Verhoeff J(, van Rossum P(, van Lindert A(, van der Velden T(, van der Kemp W(, Klomp D(, Arteaga de Castro C(. Feasibility of 31 P spectroscopic imaging at 7 T in lung carcinoma patients. NMR IN BIOMEDICINE 2021; 34:e4204. [PMID: 31736167 PMCID: PMC8244006 DOI: 10.1002/nbm.4204] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Revised: 09/20/2019] [Accepted: 09/26/2019] [Indexed: 05/13/2023]
Abstract
Currently, it is difficult to predict effective therapy response to molecular therapies for the treatment of lung cancer based solely on anatomical images. 31 P MR spectroscopic imaging could provide as a non-invasive method to monitor potential biomarkers for early therapy evaluation, a necessity to improve personalized care and reduce cost. However, surface coils limit the imaging volume in conventional 31 P MRSI. High-energetic adiabatic RF pulses are required to achieve flip angle homogeneity but lead to high SAR. Birdcage coils permit use of conventional amplitude modulated pulses, even over large FOV, potentially decreasing overall SAR massively. Here, we investigate the feasibility of 3D 31 P MRSI at 7 T in lung carcinoma patients using an integrated 31 P birdcage body coil in combination with either a dual-coil or a 16-channel receiver. Simulations showed a maximum decrease in SNR per unit of time of 8% for flip angle deviations in short TR low flip-angle excitation 3D CSI. The minimal SNR loss allowed for fast 3D CSI without time-consuming calibration steps (>10:00 min.). 31 P spectra from four lung carcinoma patients were acquired within 29:00 minutes and with high SNR using both receivers. The latter allowed discrimination of individual phosphodiesters, inorganic phosphate, phosphocreatine and ATP. The receiver array allowed for an increased FOV compared to the dual-coil receiver. 3D 31 P-CSI were acquired successfully in four lung carcinoma patients using the integrated 31 P body coil at ultra-high field. The increased spectral resolution at 7 T allowed differentiation of multiple 31 P metabolites related to phospholipid and energy metabolism. Simulations provide motivation to exclude 31 P B1 calibrations, potentially decreasing total scan duration. Employing large receiver arrays improves the field of view allowing for full organ coverage. 31 P MRSI is feasible in lung carcinoma patients and has potential as a non-invasive method for monitoring personalized therapy response in lung tumors.
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Sanchez Panchuelo RM, Mougin O, Turner R, Francis ST. Quantitative T1 mapping using multi-slice multi-shot inversion recovery EPI. Neuroimage 2021; 234:117976. [PMID: 33781969 PMCID: PMC8204273 DOI: 10.1016/j.neuroimage.2021.117976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 02/27/2021] [Accepted: 03/13/2021] [Indexed: 11/12/2022] Open
Abstract
An efficient multi-slice inversion–recovery EPI (MS-IR-EPI) sequence for fast, high spatial resolution, quantitative T1 mapping is presented, using a segmented simultaneous multi-slice acquisition, combined with slice order shifting across multiple acquisitions. The segmented acquisition minimises the effective TE and readout duration compared to a single-shot EPI scheme, reducing geometric distortions to provide high quality T1 maps with a narrow point-spread function. The precision and repeatability of MS-IR-EPI T1 measurements are assessed using both T1-calibrated and T2-calibrated ISMRM/NIST phantom spheres at 3 and 7 T and compared with single slice IR and MP2RAGE methods. Magnetization transfer (MT) effects of the spectrally-selective fat-suppression (FS) pulses required for in vivo imaging are shown to shorten the measured in-vivo T1 values. We model the effect of these fat suppression pulses on T1 measurements and show that the model can remove their MT contribution from the measured T1, thus providing accurate T1 quantification. High spatial resolution T1 maps of the human brain generated with MS-IR-EPI at 7 T are compared with those generated with the widely implemented MP2RAGE sequence. Our MS-IR-EPI sequence provides high SNR per unit time and sharper T1 maps than MP2RAGE, demonstrating the potential for ultra-high resolution T1 mapping and the improved discrimination of functionally relevant cortical areas in the human brain.
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Affiliation(s)
- Rosa M Sanchez Panchuelo
- Sir Peter Mansfield Imaging Centre, School of Physics and Astronomy, University of Nottingham, Nottingham, United Kingdom; NIHR Nottingham Biomedical Research Centre, University of Nottingham, Nottingham, United Kingdom.
| | - Olivier Mougin
- Sir Peter Mansfield Imaging Centre, School of Physics and Astronomy, University of Nottingham, Nottingham, United Kingdom
| | - Robert Turner
- Sir Peter Mansfield Imaging Centre, School of Physics and Astronomy, University of Nottingham, Nottingham, United Kingdom; Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
| | - Susan T Francis
- Sir Peter Mansfield Imaging Centre, School of Physics and Astronomy, University of Nottingham, Nottingham, United Kingdom; NIHR Nottingham Biomedical Research Centre, University of Nottingham, Nottingham, United Kingdom
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Lévy S, Roche PH, Guye M, Callot V. Feasibility of human spinal cord perfusion mapping using dynamic susceptibility contrast imaging at 7T: Preliminary results and identified guidelines. Magn Reson Med 2020; 85:1183-1194. [PMID: 33151009 DOI: 10.1002/mrm.28559] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 09/28/2020] [Accepted: 09/29/2020] [Indexed: 12/14/2022]
Abstract
PURPOSE To explore the feasibility of dynamic susceptibility contrast MRI at 7 Tesla for human spinal cord perfusion mapping and fill the gap between brain and spinal cord perfusion mapping techniques. METHODS Acquisition protocols for high-resolution single shot EPI in the spinal cord were optimized for both spin-echo and gradient-echo preparations, including cardiac gating, acquisition times and breathing cycle recording. Breathing-induced MRI signal fluctuations were investigated in healthy volunteers. A specific image- and signal-processing pipeline was implemented to address them. Dynamic susceptibility contrast was then evaluated in 3 healthy volunteers and 5 patients. Bolus depiction on slice-wise signal within cord was investigated, and maps of relative perfusion indices were computed. RESULTS Signal fluctuations were increased by 1.9 and 2.3 in free-breathing compared to apnea with spin-echo and gradient-echo, respectively. The ratio between signal fluctuations and bolus peak in healthy volunteers was 5.0% for spin-echo and 3.8% for gradient-echo, allowing clear depiction of the bolus on every slice and yielding relative blood flow and volume maps exhibiting the expected higher perfusion of gray matter. However, signal fluctuations in patients were increased by 4 in average (using spin-echo), compromising the depiction of the bolus in slice-wise signal. Moreover, 3 of 18 slices had to be discarded because of fat-aliasing artifacts. CONCLUSION Dynamic susceptibility contrast MRI at 7 Tesla showed great potential for spinal cord perfusion mapping with a reliability never achieved thus far for single subject and single slice measurements. Signal stability needs to be improved in acquisition conditions associated with patients; guidelines to achieve that have been identified and shared.
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Affiliation(s)
- Simon Lévy
- Aix-Marseille Univ, CNRS, CRMBM, Marseille, France.,APHM, Hopital Universitaire Timone, CEMEREM, Marseille, France.,Aix-Marseille Univ, Univ Gustave Eiffel, LBA, Marseille, France.,iLab-Spine International Associated Laboratory, Marseille-Montreal, France-Canada
| | - Pierre-Hugues Roche
- iLab-Spine International Associated Laboratory, Marseille-Montreal, France-Canada.,Neurosurgery Department, APHM, Hopital Nord, Marseille, France
| | - Maxime Guye
- Aix-Marseille Univ, CNRS, CRMBM, Marseille, France.,APHM, Hopital Universitaire Timone, CEMEREM, Marseille, France
| | - Virginie Callot
- Aix-Marseille Univ, CNRS, CRMBM, Marseille, France.,APHM, Hopital Universitaire Timone, CEMEREM, Marseille, France.,iLab-Spine International Associated Laboratory, Marseille-Montreal, France-Canada
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An H, Shin HG, Ji S, Jung W, Oh S, Shin D, Park J, Lee J. DeepResp: Deep learning solution for respiration-induced B 0 fluctuation artifacts in multi-slice GRE. Neuroimage 2020; 224:117432. [PMID: 33038539 DOI: 10.1016/j.neuroimage.2020.117432] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2020] [Revised: 09/23/2020] [Accepted: 09/30/2020] [Indexed: 11/25/2022] Open
Abstract
Respiration-induced B0 fluctuation corrupts MRI images by inducing phase errors in k-space. A few approaches such as navigator have been proposed to correct for the artifacts at the expense of sequence modification. In this study, a new deep learning method, which is referred to as DeepResp, is proposed for reducing the respiration-artifacts in multi-slice gradient echo (GRE) images. DeepResp is designed to extract the respiration-induced phase errors from a complex image using deep neural networks. Then, the network-generated phase errors are applied to the k-space data, creating an artifact-corrected image. For network training, the computer-simulated images were generated using artifact-free images and respiration data. When evaluated, both simulated images and in-vivo images of two different breathing conditions (deep breathing and natural breathing) show improvements (simulation: normalized root-mean-square error (NRMSE) from 7.8 ± 5.2% to 1.3 ± 0.6%; structural similarity (SSIM) from 0.88 ± 0.08 to 0.99 ± 0.01; ghost-to-signal-ratio (GSR) from 7.9 ± 7.2% to 0.6 ± 0.6%; deep breathing: NRMSE from 13.9 ± 4.6% to 5.8 ± 1.4%; SSIM from 0.86 ± 0.03 to 0.95 ± 0.01; GSR 20.2 ± 10.2% to 5.7 ± 2.3%; natural breathing: NRMSE from 5.2 ± 3.3% to 4.0 ± 2.5%; SSIM from 0.94 ± 0.04 to 0.97 ± 0.02; GSR 5.7 ± 5.0% to 2.8 ± 1.1%). Our approach does not require any modification of the sequence or additional hardware, and may therefore find useful applications. Furthermore, the deep neural networks extract respiration-induced phase errors, which is more interpretable and reliable than results of end-to-end trained networks.
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Affiliation(s)
- Hongjun An
- Laboratory for Imaging Science and Technology, Department of Electrical and Computer Engineering, Seoul National University, Seoul, South Korea
| | - Hyeong-Geol Shin
- Laboratory for Imaging Science and Technology, Department of Electrical and Computer Engineering, Seoul National University, Seoul, South Korea
| | - Sooyeon Ji
- Laboratory for Imaging Science and Technology, Department of Electrical and Computer Engineering, Seoul National University, Seoul, South Korea
| | - Woojin Jung
- Laboratory for Imaging Science and Technology, Department of Electrical and Computer Engineering, Seoul National University, Seoul, South Korea
| | - Sehong Oh
- Division of Biomedical Engineering, Hankuk University of Foreign Studies, Gyeonggi-do, South Korea
| | - Dongmyung Shin
- Laboratory for Imaging Science and Technology, Department of Electrical and Computer Engineering, Seoul National University, Seoul, South Korea
| | - Juhyung Park
- Laboratory for Imaging Science and Technology, Department of Electrical and Computer Engineering, Seoul National University, Seoul, South Korea
| | - Jongho Lee
- Laboratory for Imaging Science and Technology, Department of Electrical and Computer Engineering, Seoul National University, Seoul, South Korea.
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Simultaneous feedback control for joint field and motion correction in brain MRI. Neuroimage 2020; 226:117286. [PMID: 32992003 DOI: 10.1016/j.neuroimage.2020.117286] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Revised: 07/21/2020] [Accepted: 08/14/2020] [Indexed: 11/23/2022] Open
Abstract
T2*-weighted gradient-echo sequences count among the most widely used techniques in neuroimaging and offer rich magnitude and phase contrast. The susceptibility effects underlying this contrast scale with B0, making T2*-weighted imaging particularly interesting at high field. High field also benefits baseline sensitivity and thus facilitates high-resolution studies. However, enhanced susceptibility effects and high target resolution come with inherent challenges. Relying on long echo times, T2*-weighted imaging not only benefits from enhanced local susceptibility effects but also suffers from increased field fluctuations due to moving body parts and breathing. High resolution, in turn, renders neuroimaging particularly vulnerable to motion of the head. This work reports the implementation and characterization of a system that aims to jointly address these issues. It is based on the simultaneous operation of two control loops, one for field stabilization and one for motion correction. The key challenge with this approach is that the two loops both operate on the magnetic field in the imaging volume and are thus prone to mutual interference and potential instability. This issue is addressed at the levels of sensing, timing, and control parameters. Performance assessment shows the resulting system to be stable and exhibit adequate loop decoupling, precision, and bandwidth. Simultaneous field and motion control is then demonstrated in examples of T2*-weighted in vivo imaging at 7T.
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Wehkamp N, Rovedo P, Fischer E, Hennig J, Zaitsev M. Frequency-adjustable magnetic field probes. Magn Reson Med 2020; 85:1123-1133. [PMID: 32745321 DOI: 10.1002/mrm.28444] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 06/24/2020] [Accepted: 07/03/2020] [Indexed: 11/11/2022]
Abstract
PURPOSE Nuclear Magnetic Resonance field probes provide exciting possibilities for enhancing MR image quality by allowing for calibration of k-space trajectories and/or dynamic measurement of local field changes. The purpose of this study is to design and build field probes, which are easier to manufacture and more flexible to use than existing probes. METHODS A new manufacturing method is presented based on light-activated resin to encase the coil assembly and the 1H sample. This method allows for realizing field probes with tightly integrated orthogonal coils, whereby the local resonance frequency of protons can be adjusted during the MR experiment, by applying a DC current to the integrated B 0 -field modification coil. RESULTS The apparent field probe position in a gradient echo experiment was shifted within the field of view by changing its Larmor frequency using an integrated micro-coil with 5.5 windings. The measured frequency modulation induced by the B 0 -field modification coil was 113 Hz/mA. The probe was tested with currents up to 100 mA. The DC current in the local field modification coil did not introduce visible artifacts in the MR images. Furthermore selective off-resonant excitation of the new field probes at 2 kHz above the main RF frequency was demonstrated. Gradient impulse response functions measured with a traditional and proposed probe show similar gradient imperfections. CONCLUSIONS The presented approach opens up new possibilities for concurrent field monitoring during MR experiments using standard RF capabilities of clinical scanners.
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Affiliation(s)
- Niklas Wehkamp
- Faculty of Medicine, Department of Radiology, Medical Physics, Medical Center-University of Freiburg, Freiburg, Germany
| | - Philipp Rovedo
- Faculty of Medicine, Department of Radiology, Medical Physics, Medical Center-University of Freiburg, Freiburg, Germany
| | - Elmar Fischer
- Faculty of Medicine, Department of Radiology, Medical Physics, Medical Center-University of Freiburg, Freiburg, Germany
| | - Jürgen Hennig
- Faculty of Medicine, Department of Radiology, Medical Physics, Medical Center-University of Freiburg, Freiburg, Germany
| | - Maxim Zaitsev
- Faculty of Medicine, Department of Radiology, Medical Physics, Medical Center-University of Freiburg, Freiburg, Germany
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11
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Puts NA, Ryan M, Oeltzschner G, Horska A, Edden RAE, Mahone EM. Reduced striatal GABA in unmedicated children with ADHD at 7T. Psychiatry Res Neuroimaging 2020; 301:111082. [PMID: 32438277 DOI: 10.1016/j.pscychresns.2020.111082] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/25/2019] [Revised: 03/30/2020] [Accepted: 03/31/2020] [Indexed: 12/12/2022]
Abstract
Attention-deficit hyperactive disorder (ADHD) is characterized by inattention and increased impulsive and hypermotoric behaviors.Despite the high prevalence and impact of ADHD, little is known about the underlying neurophysiology of ADHD. The main inhibitory and excitatory neurotransmitters γ-aminobutyric acid (GABA) and glutamate are receiving increased attention in ADHD and can be measured using Magnetic Resonance Spectroscopy (MRS). However, MRS studies in ADHD are limited. We measured GABA and glutamate in young unmedicated participants, utilizing high magnetic field strength. Fifty unmedicated children (26 with ADHD, 24 controls) aged 5-9 years completed MRS at 7T and behavioral testing. GABA and glutamate were measured in dorsolateral prefrontal cortex (DLPFC), anterior cingulate cortex (ACC), premotor cortex (PMC), and striatum, and estimated using LCModel. Children with ADHD showed poorer inhibitory control and significantly reduced GABA/Cr in the striatum, but not in ACC, DLPFC, or PMC regions. There were no significant group differences for Glu/Cr levels, or correlations with behavioral manifestations of ADHD. The primary finding of this study is a reduction of striatal GABA levels in unmedicated children with ADHD at 7T. These findings provide guidance for future studies or interventions. Reduced striatal GABA may be a marker for specific GABA-related treatment for ADHD.
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Affiliation(s)
- Nicolaas A Puts
- Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, 600 N Wolfe St., Baltimore, MD 21287, United States; F.M. Kirby Research Center for Functional Brain Imaging, Kennedy Krieger Institute, 707 N Broadway, Baltimore, MD 21205, United States; Department of Forensic and Neurodevelopmental Sciences, Sackler Institute for Translational Neurodevelopment, Institute of Psychiatry, Psychology and Neuroscience, King's College London, 16 De Crespigny Park, London, SE5 8AB, United Kingdom.
| | - Matthew Ryan
- Department of Neuropsychology, Kennedy Krieger Institute, 1750 E. Fairmount Ave., Baltimore, MD 21231 United States
| | - Georg Oeltzschner
- Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, 600 N Wolfe St., Baltimore, MD 21287, United States; F.M. Kirby Research Center for Functional Brain Imaging, Kennedy Krieger Institute, 707 N Broadway, Baltimore, MD 21205, United States
| | - Alena Horska
- Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, 600 N Wolfe St., Baltimore, MD 21287, United States
| | - Richard A E Edden
- Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, 600 N Wolfe St., Baltimore, MD 21287, United States; F.M. Kirby Research Center for Functional Brain Imaging, Kennedy Krieger Institute, 707 N Broadway, Baltimore, MD 21205, United States
| | - E Mark Mahone
- Department of Neuropsychology, Kennedy Krieger Institute, 1750 E. Fairmount Ave., Baltimore, MD 21231 United States; Department of Psychiatry and Behavioral Sciences, The Johns Hopkins University School of Medicine, 600 N Wolfe St., Baltimore, MD 21287, United States
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12
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Hock M, Terekhov M, Stefanescu MR, Lohr D, Herz S, Reiter T, Ankenbrand M, Kosmala A, Gassenmaier T, Juchem C, Schreiber LM. B 0 shimming of the human heart at 7T. Magn Reson Med 2020; 85:182-196. [PMID: 32700791 DOI: 10.1002/mrm.28423] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Revised: 06/19/2020] [Accepted: 06/22/2020] [Indexed: 01/31/2023]
Abstract
PURPOSE Inhomogeneities of the static magnetic B0 field are a major limiting factor in cardiac MRI at ultrahigh field (≥ 7T), as they result in signal loss and image distortions. Different magnetic susceptibilities of the myocardium and surrounding tissue in combination with cardiac motion lead to strong spatio-temporal B0 -field inhomogeneities, and their homogenization (B0 shimming) is a prerequisite. Limitations of state-of-the-art shimming are described, regional B0 variations are measured, and a methodology for spherical harmonics shimming of the B0 field within the human myocardium is proposed. METHODS The spatial B0 -field distribution in the heart was analyzed as well as temporal B0 -field variations in the myocardium over the cardiac cycle. Different shim region-of-interest selections were compared, and hardware limitations of spherical harmonics B0 shimming were evaluated by calibration-based B0 -field modeling. The role of third-order spherical harmonics terms was analyzed as well as potential benefits from cardiac phase-specific shimming. RESULTS The strongest B0 -field inhomogeneities were observed in localized spots within the left-ventricular and right-ventricular myocardium and varied between systolic and diastolic cardiac phases. An anatomy-driven shim region-of-interest selection allowed for improved B0 -field homogeneity compared with a standard shim region-of-interest cuboid. Third-order spherical harmonics terms were demonstrated to be beneficial for shimming of these myocardial B0 -field inhomogeneities. Initial results from the in vivo implementation of a potential shim strategy were obtained. Simulated cardiac phase-specific shimming was performed, and a shim term-by-term analysis revealed periodic variations of required currents. CONCLUSION Challenges in state-of-the-art B0 shimming of the human heart at 7 T were described. Cardiac phase-specific shimming strategies were found to be superior to vendor-supplied shimming.
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Affiliation(s)
- Michael Hock
- Chair of Cellular and Molecular Imaging, Comprehensive Heart Failure Center (CHFC), University Hospital Wuerzburg, Wuerzburg, Germany
| | - Maxim Terekhov
- Chair of Cellular and Molecular Imaging, Comprehensive Heart Failure Center (CHFC), University Hospital Wuerzburg, Wuerzburg, Germany
| | - Maria Roxana Stefanescu
- Chair of Cellular and Molecular Imaging, Comprehensive Heart Failure Center (CHFC), University Hospital Wuerzburg, Wuerzburg, Germany
| | - David Lohr
- Chair of Cellular and Molecular Imaging, Comprehensive Heart Failure Center (CHFC), University Hospital Wuerzburg, Wuerzburg, Germany
| | - Stefan Herz
- Chair of Cellular and Molecular Imaging, Comprehensive Heart Failure Center (CHFC), University Hospital Wuerzburg, Wuerzburg, Germany.,Department of Diagnostic and Interventional Radiology, University Hospital Wuerzburg, Wuerzburg, Germany
| | - Theresa Reiter
- Chair of Cellular and Molecular Imaging, Comprehensive Heart Failure Center (CHFC), University Hospital Wuerzburg, Wuerzburg, Germany.,Department of Internal Medicine I, University Hospital Wuerzburg, Wuerzburg, Germany
| | - Markus Ankenbrand
- Chair of Cellular and Molecular Imaging, Comprehensive Heart Failure Center (CHFC), University Hospital Wuerzburg, Wuerzburg, Germany
| | - Aleksander Kosmala
- Chair of Cellular and Molecular Imaging, Comprehensive Heart Failure Center (CHFC), University Hospital Wuerzburg, Wuerzburg, Germany.,Department of Diagnostic and Interventional Radiology, University Hospital Wuerzburg, Wuerzburg, Germany
| | - Tobias Gassenmaier
- Chair of Cellular and Molecular Imaging, Comprehensive Heart Failure Center (CHFC), University Hospital Wuerzburg, Wuerzburg, Germany.,Department of Diagnostic and Interventional Radiology, University Hospital Wuerzburg, Wuerzburg, Germany
| | - Christoph Juchem
- Department of Biomedical Engineering, Columbia University, New York, New York, USA.,Department of Radiology, Columbia University, New York, New York, USA
| | - Laura Maria Schreiber
- Chair of Cellular and Molecular Imaging, Comprehensive Heart Failure Center (CHFC), University Hospital Wuerzburg, Wuerzburg, Germany
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13
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Foltz W, Driscoll B, Laurence Lee S, Nayak K, Nallapareddy N, Fatemi A, Ménard C, Coolens C, Chung C. Phantom Validation of DCE-MRI Magnitude and Phase-Based Vascular Input Function Measurements. ACTA ACUST UNITED AC 2020; 5:77-89. [PMID: 30854445 PMCID: PMC6403037 DOI: 10.18383/j.tom.2019.00001] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Accurate, patient-specific measurement of arterial input functions (AIF) may improve model-based analysis of vascular permeability. This study investigated factors affecting AIF measurements from magnetic resonance imaging (MRI) magnitude (AIFMAGN) and phase (AIFPHA) signals, and compared them against computed tomography (CT) (AIFCT), under controlled conditions relevant to clinical protocols using a multimodality flow phantom. The flow phantom was applied at flip angles of 20° and 30°, flow rates (3-7.5 mL/s), and peak bolus concentrations (0.5-10 mM), for in-plane and through-plane flow. Spatial 3D-FLASH signal and variable flip angle T1 profiles were measured to investigate in-flow and radiofrequency-related biases, and magnitude- and phase-derived Gd-DTPA concentrations were compared. MRI AIF performance was tested against AIFCT via Pearson correlation analysis. AIFMAGN was sensitive to imaging orientation, spatial location, flip angle, and flow rate, and it grossly underestimated AIFCT peak concentrations. Conversion to Gd-DTPA concentration using T1 taken at the same orientation and flow rate as the dynamic contrast-enhanced acquisition improved AIFMAGN accuracy; yet, AIFMAGN metrics remained variable and significantly reduced from AIFCT at concentrations above 2.5 mM. AIFPHA performed equivalently within 1 mM to AIFCT across all tested conditions. AIFPHA, but not AIFMAGN, reported equivalent measurements to AIFCT across the range of tested conditions. AIFPHA showed superior robustness.
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Affiliation(s)
- Warren Foltz
- Department of Medical Physics, Princess Margaret Cancer Center and University Health Network, Toronto, ON, Canada.,Department of Radiation Oncology, University of Toronto, Toronto, ON, Canada
| | - Brandon Driscoll
- Department of Medical Physics, Princess Margaret Cancer Center and University Health Network, Toronto, ON, Canada
| | | | - Krishna Nayak
- Ming Hsieh Department of Electrical Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, CA
| | - Naren Nallapareddy
- Ming Hsieh Department of Electrical Engineering, Viterbi School of Engineering, University of Southern California, Los Angeles, CA
| | - Ali Fatemi
- Department of Radiation Oncology, University of Toronto, Toronto, ON, Canada
| | - Cynthia Ménard
- Department of Radiation Oncology, Centre Hospitalier Universite de Montreal, Montreal, Canada.,Department of Biomaterials and Biomedical Engineering, University of Toronto, Toronto, ON, Canada; and
| | - Catherine Coolens
- Department of Medical Physics, Princess Margaret Cancer Center and University Health Network, Toronto, ON, Canada.,Department of Radiation Oncology, University of Toronto, Toronto, ON, Canada.,Department of Radiation Oncology, Centre Hospitalier Universite de Montreal, Montreal, Canada.,Department of Biomaterials and Biomedical Engineering, University of Toronto, Toronto, ON, Canada; and
| | - Caroline Chung
- TECHNA Institute, University Health Network, Toronto, ON, Canada.,Department of Radiation Oncology, MD Anderson Cancer Center, Houston, TX
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14
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van Houtum Q, Welting D, Gosselink W, Klomp D, Arteaga de Castro C, van der Kemp W. Low SAR 31 P (multi-echo) spectroscopic imaging using an integrated whole-body transmit coil at 7T. NMR IN BIOMEDICINE 2019; 32:e4178. [PMID: 31608515 PMCID: PMC6900186 DOI: 10.1002/nbm.4178] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Revised: 08/06/2019] [Accepted: 08/15/2019] [Indexed: 05/10/2023]
Abstract
Phosphorus (31 P) MRSI provides opportunities to monitor potential biomarkers. However, current applications of 31 P MRS are generally restricted to relatively small volumes as small coils are used. Conventional surface coils require high energy adiabatic RF pulses to achieve flip angle homogeneity, leading to high specific absorption rates (SARs), and occupy space within the MRI bore. A birdcage coil behind the bore cover can potentially reduce the SAR constraints massively by use of conventional amplitude modulated pulses without sacrificing patient space. Here, we demonstrate that the integrated 31 P birdcage coil setup with a high power RF amplifier at 7 T allows for low flip angle excitations with short repetition time (TR ) for fast 3D chemical shift imaging (CSI) and 3D T1 -weighted CSI as well as high flip angle multi-refocusing pulses, enabling multi-echo CSI that can measure metabolite T2 , over a large field of view in the body. B1+ calibration showed a variation of only 30% in maximum B1 in four volunteers. High signal-to-noise ratio (SNR) MRSI was obtained in the gluteal muscle using two fast in vivo 3D spectroscopic imaging protocols, with low and high flip angles, and with multi-echo MRSI without exceeding SAR levels. In addition, full liver MRSI was achieved within SAR constraints. The integrated 31 P body coil allowed for fast spectroscopic imaging and successful implementation of the multi-echo method in the body at 7 T. Moreover, no additional enclosing hardware was needed for 31 P excitation, paving the way to include larger subjects and more space for receiver arrays. The increase in possible number of RF excitations per scan time, due to the improved B1+ homogeneity and low SAR, allows SNR to be exchanged for spatial resolution in CSI and/or T1 weighting by simply manipulating TR and/or flip angle to detect and quantify ratios from different molecular species.
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Affiliation(s)
- Q. van Houtum
- University Medical Center UtrechtUtrechtThe Netherlands
| | - D. Welting
- University Medical Center UtrechtUtrechtThe Netherlands
| | | | - D.W.J. Klomp
- University Medical Center UtrechtUtrechtThe Netherlands
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15
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Zimmermann F, Korzowski A, Breitling J, Meissner J, Schuenke P, Loi L, Zaiss M, Bickelhaupt S, Schott S, Schlemmer H, Paech D, Ladd ME, Bachert P, Goerke S. A novel normalization for amide proton transfer CEST MRI to correct for fat signal–induced artifacts: application to human breast cancer imaging. Magn Reson Med 2019; 83:920-934. [DOI: 10.1002/mrm.27983] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Revised: 07/24/2019] [Accepted: 08/14/2019] [Indexed: 12/17/2022]
Affiliation(s)
- Ferdinand Zimmermann
- Division of Medical Physics in Radiology German Cancer Research Center (DKFZ) Heidelberg Germany
- Faculty of Physics and Astronomy University of Heidelberg Heidelberg Germany
| | - Andreas Korzowski
- Division of Medical Physics in Radiology German Cancer Research Center (DKFZ) Heidelberg Germany
| | - Johannes Breitling
- Division of Medical Physics in Radiology German Cancer Research Center (DKFZ) Heidelberg Germany
- Faculty of Physics and Astronomy University of Heidelberg Heidelberg Germany
- Max‐Planck‐Institute for Nuclear Physics Heidelberg Germany
| | - Jan‐Eric Meissner
- Division of Medical Physics in Radiology German Cancer Research Center (DKFZ) Heidelberg Germany
| | - Patrick Schuenke
- Division of Medical Physics in Radiology German Cancer Research Center (DKFZ) Heidelberg Germany
| | - Lisa Loi
- Department of Radiology German Cancer Research Center (DKFZ) Heidelberg Germany
- Faculty of Medicine University of Heidelberg Heidelberg Germany
| | - Moritz Zaiss
- Department of High‐field Magnetic Resonance Max‐Planck‐Institute for Biological Cybernetics Tübingen Germany
| | - Sebastian Bickelhaupt
- Medical Imaging and Radiology ‐ Cancer Prevention German Cancer Research Center (DKFZ) Heidelberg Germany
| | - Sarah Schott
- Department of Obstetrics and Gynecology University Hospital Heidelberg Heidelberg Germany
| | - Heinz‐Peter Schlemmer
- Department of Radiology German Cancer Research Center (DKFZ) Heidelberg Germany
- Faculty of Medicine University of Heidelberg Heidelberg Germany
| | - Daniel Paech
- Department of Radiology German Cancer Research Center (DKFZ) Heidelberg Germany
| | - Mark E. Ladd
- Division of Medical Physics in Radiology German Cancer Research Center (DKFZ) Heidelberg Germany
- Faculty of Physics and Astronomy University of Heidelberg Heidelberg Germany
- Faculty of Medicine University of Heidelberg Heidelberg Germany
| | - Peter Bachert
- Division of Medical Physics in Radiology German Cancer Research Center (DKFZ) Heidelberg Germany
- Faculty of Physics and Astronomy University of Heidelberg Heidelberg Germany
| | - Steffen Goerke
- Division of Medical Physics in Radiology German Cancer Research Center (DKFZ) Heidelberg Germany
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16
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Li L, Wyrwicz AM. A multifunction digital receiver suitable for real-time frequency detection and compensation in fast magnetic resonance imaging. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2019; 90:053707. [PMID: 31153228 PMCID: PMC6544506 DOI: 10.1063/1.5092312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2019] [Accepted: 05/09/2019] [Indexed: 06/09/2023]
Abstract
We describe the development and implementation of a multifunction digital receiver suitable for magnetic resonance imaging with capability of real-time frequency detection and compensation. The digital receiver consists primarily of firmware modules that combine the functionalities of signal acquisition, frequency detection and compensation, and data correction and image reconstruction. The receiver was developed based on a single multiple-input multiple-output radio-frequency electronic board equipped with a reconfigurable Field Programmable Gate Array (FPGA) device. A simple and practical algorithm was developed and implemented on the FPGA to accelerate the data processing for frequency determination. The simplified frequency detection and the higher system integration enable the receiver to reduce dramatically the time for frequency detection and compensation. With this receiver, we are able to detect the frequency of short-duration signals in the bandwidth of 10 MHz centered at 400 MHz within 75 ns after the signal acquisition. We describe the designs of the key FPGA modules and how these modules integrate into a multifunction receiver. We also present testing data that validate the simplified algorithm for frequency determination, demonstrate frequency detection and compensation, and demonstrate how real-time data correction is performed during image acquisition and reconstruction.
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Affiliation(s)
- Limin Li
- Center for Basic MR Research, NorthShore University HealthSystem Research Institute, Evanston, Illinois 60201, USA
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17
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Ladd ME, Bachert P, Meyerspeer M, Moser E, Nagel AM, Norris DG, Schmitter S, Speck O, Straub S, Zaiss M. Pros and cons of ultra-high-field MRI/MRS for human application. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2018; 109:1-50. [PMID: 30527132 DOI: 10.1016/j.pnmrs.2018.06.001] [Citation(s) in RCA: 264] [Impact Index Per Article: 44.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Revised: 06/06/2018] [Accepted: 06/07/2018] [Indexed: 05/08/2023]
Abstract
Magnetic resonance imaging and spectroscopic techniques are widely used in humans both for clinical diagnostic applications and in basic research areas such as cognitive neuroimaging. In recent years, new human MR systems have become available operating at static magnetic fields of 7 T or higher (≥300 MHz proton frequency). Imaging human-sized objects at such high frequencies presents several challenges including non-uniform radiofrequency fields, enhanced susceptibility artifacts, and higher radiofrequency energy deposition in the tissue. On the other side of the scale are gains in signal-to-noise or contrast-to-noise ratio that allow finer structures to be visualized and smaller physiological effects to be detected. This review presents an overview of some of the latest methodological developments in human ultra-high field MRI/MRS as well as associated clinical and scientific applications. Emphasis is given to techniques that particularly benefit from the changing physical characteristics at high magnetic fields, including susceptibility-weighted imaging and phase-contrast techniques, imaging with X-nuclei, MR spectroscopy, CEST imaging, as well as functional MRI. In addition, more general methodological developments such as parallel transmission and motion correction will be discussed that are required to leverage the full potential of higher magnetic fields, and an overview of relevant physiological considerations of human high magnetic field exposure is provided.
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Affiliation(s)
- Mark E Ladd
- Medical Physics in Radiology, German Cancer Research Center (DKFZ), Heidelberg, Germany; Faculty of Medicine, University of Heidelberg, Heidelberg, Germany; Faculty of Physics and Astronomy, University of Heidelberg, Heidelberg, Germany; Erwin L. Hahn Institute for MRI, University of Duisburg-Essen, Essen, Germany.
| | - Peter Bachert
- Medical Physics in Radiology, German Cancer Research Center (DKFZ), Heidelberg, Germany; Faculty of Physics and Astronomy, University of Heidelberg, Heidelberg, Germany.
| | - Martin Meyerspeer
- Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria; MR Center of Excellence, Medical University of Vienna, Vienna, Austria.
| | - Ewald Moser
- Center for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria; MR Center of Excellence, Medical University of Vienna, Vienna, Austria.
| | - Armin M Nagel
- Medical Physics in Radiology, German Cancer Research Center (DKFZ), Heidelberg, Germany; Institute of Radiology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.
| | - David G Norris
- Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen, Nijmegen, Netherlands; Erwin L. Hahn Institute for MRI, University of Duisburg-Essen, Essen, Germany.
| | - Sebastian Schmitter
- Medical Physics in Radiology, German Cancer Research Center (DKFZ), Heidelberg, Germany; Physikalisch-Technische Bundesanstalt (PTB), Braunschweig and Berlin, Germany.
| | - Oliver Speck
- Department of Biomedical Magnetic Resonance, Otto-von-Guericke-University Magdeburg, Magdeburg, Germany; German Center for Neurodegenerative Diseases, Magdeburg, Germany; Center for Behavioural Brain Sciences, Magdeburg, Germany; Leibniz Institute for Neurobiology, Magdeburg, Germany.
| | - Sina Straub
- Medical Physics in Radiology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
| | - Moritz Zaiss
- High-Field Magnetic Resonance Center, Max-Planck-Institute for Biological Cybernetics, Tübingen, Germany.
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18
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Stockmann JP, Wald LL. In vivo B 0 field shimming methods for MRI at 7T. Neuroimage 2018; 168:71-87. [PMID: 28602943 PMCID: PMC5760477 DOI: 10.1016/j.neuroimage.2017.06.013] [Citation(s) in RCA: 85] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2016] [Revised: 05/19/2017] [Accepted: 06/06/2017] [Indexed: 01/12/2023] Open
Abstract
Functional MRI (fMRI) at 7T and above provides improved Signal-to-Noise Ratio and Contrast-to-Noise Ratio compared to 3T acquisitions. In addition to the beneficial effects on spin polarization and magnetization of deoxyhemoglobin, the increased applied field also further magnetizes air and tissue. While the magnets themselves typically provide a static B0 field with sufficient spatial homogeneity, the diamagnetism of tissue and the paramagnetism of air causes local field deviations inside the human head. These spatially-varying field offsets (ΔB0) cause image artifacts, especially in single shot EPI, including geometric distortion, signal dropout, and blurring. These effects are particularly strong near air-tissue interfaces such as the frontal sinus, and ear canals. Furthermore, if the field offsets are dynamically modulated through physiological processes such as respiration or motion, then the effect on the image time-series can be even more problematic. While post-processing methods have been developed to mitigate these effects, the ideal solution would be to reduce the ΔB0 variations at their source. Typically 7T scanners contain 2nd and some 3rd order spherical harmonic shim coil terms to cancel static ΔB0 variations of low spatial order. In this article, we will motivate the need for improved, higher-order compensation for B0 inhomogeneity and potentially add dynamic control of these fields. We discuss and compare several promising hardware approaches for static and dynamic B0 shimming using either higher-order spherical harmonic shim coils or multi-coil shim arrays as well as passive shimming approaches, and active variants such and adaptive current networks.
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Affiliation(s)
- Jason P Stockmann
- A. A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA 02129, United States.
| | - Lawrence L Wald
- A. A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA 02129, United States; Harvard Medical School, Boston, MA, United States
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19
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Topfer R, Foias A, Stikov N, Cohen-Adad J. Real-time correction of respiration-induced distortions in the human spinal cord using a 24-channel shim array. Magn Reson Med 2018; 80:935-946. [DOI: 10.1002/mrm.27089] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2017] [Revised: 12/22/2017] [Accepted: 12/24/2017] [Indexed: 12/25/2022]
Affiliation(s)
- Ryan Topfer
- NeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal; Montreal Quebec Canada
| | - Alexandru Foias
- NeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal; Montreal Quebec Canada
| | - Nikola Stikov
- NeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal; Montreal Quebec Canada
- Montreal Heart Institute, Université de Montréal; Montreal Quebec Canada
| | - Julien Cohen-Adad
- NeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal; Montreal Quebec Canada
- Functional Neuroimaging Unit, CRIUGM, Université de Montréal; Montreal Quebec Canada
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20
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Chang P, Nassirpour S, Eschelbach M, Scheffler K, Henning A. Constrained optimization for position calibration of an NMR field camera. Magn Reson Med 2017; 80:380-390. [PMID: 29159823 DOI: 10.1002/mrm.27010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2017] [Revised: 10/23/2017] [Accepted: 10/25/2017] [Indexed: 11/07/2022]
Abstract
PURPOSE Knowledge of the positions of field probes in an NMR field camera is necessary for monitoring the B0 field. The typical method of estimating these positions is by switching the gradients with known strengths and calculating the positions using the phases of the FIDs. We investigated improving the accuracy of estimating the probe positions and analyzed the effect of inaccurate estimations on field monitoring. METHODS The field probe positions were estimated by 1) assuming ideal gradient fields, 2) using measured gradient fields (including nonlinearities), and 3) using measured gradient fields with relative position constraints. The fields measured with the NMR field camera were compared to fields acquired using a dual-echo gradient recalled echo B0 mapping sequence. Comparisons were done for shim fields from second- to fourth-order shim terms. RESULTS The position estimation was the most accurate when relative position constraints were used in conjunction with measured (nonlinear) gradient fields. The effect of more accurate position estimates was seen when compared to fields measured using a B0 mapping sequence (up to 10%-15% more accurate for some shim fields). The models acquired from the field camera are sensitive to noise due to the low number of spatial sample points. CONCLUSION Position estimation of field probes in an NMR camera can be improved using relative position constraints and nonlinear gradient fields. Magn Reson Med 80:380-390, 2018. © 2017 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Paul Chang
- Max Planck Institute for Biological Cybernetics, Tuebingen, Germany
- IMPRS for Cognitive and Systems Neuroscience, Eberhard-Karls University of Tuebingen, Germany
| | - Sahar Nassirpour
- Max Planck Institute for Biological Cybernetics, Tuebingen, Germany
- IMPRS for Cognitive and Systems Neuroscience, Eberhard-Karls University of Tuebingen, Germany
| | - Martin Eschelbach
- Max Planck Institute for Biological Cybernetics, Tuebingen, Germany
- Department of Physics, Eberhard-Karls University of Tuebingen, Germany
| | - Klaus Scheffler
- Max Planck Institute for Biological Cybernetics, Tuebingen, Germany
- Department of Biomedical Magnetic Resonance, Eberhard-Karls University of Tuebingen, Germany
| | - Anke Henning
- Max Planck Institute for Biological Cybernetics, Tuebingen, Germany
- Department of Physics, University of Greifswald, Greifswald, Germany
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21
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Quantum-mechanical simulations for in vivo MR spectroscopy: Principles and possibilities demonstrated with the program NMRScopeB. Anal Biochem 2017; 529:79-97. [DOI: 10.1016/j.ab.2016.10.007] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Revised: 08/24/2016] [Accepted: 10/07/2016] [Indexed: 11/19/2022]
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22
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De Tillieux P, Topfer R, Foias A, Leroux I, El Maâchi I, Leblond H, Stikov N, Cohen-Adad J. A pneumatic phantom for mimicking respiration-induced artifacts in spinal MRI. Magn Reson Med 2017; 79:600-605. [DOI: 10.1002/mrm.26679] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Revised: 01/13/2017] [Accepted: 02/21/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Philippe De Tillieux
- NeuroPoly Lab; Institute of Biomedical Engineering, Polytechnique Montreal; Montreal Quebec Canada
| | - Ryan Topfer
- NeuroPoly Lab; Institute of Biomedical Engineering, Polytechnique Montreal; Montreal Quebec Canada
| | - Alexandru Foias
- NeuroPoly Lab; Institute of Biomedical Engineering, Polytechnique Montreal; Montreal Quebec Canada
| | - Iris Leroux
- NeuroPoly Lab; Institute of Biomedical Engineering, Polytechnique Montreal; Montreal Quebec Canada
| | - Imanne El Maâchi
- NeuroPoly Lab; Institute of Biomedical Engineering, Polytechnique Montreal; Montreal Quebec Canada
| | - Hugues Leblond
- Department of Anatomy; Université du Québec à Trois-Rivières; Trois-Rivières Quebec Canada
| | - Nikola Stikov
- NeuroPoly Lab; Institute of Biomedical Engineering, Polytechnique Montreal; Montreal Quebec Canada
- Montreal Heart Institute, Université de Montréal; Montreal Quebec Canada
| | - Julien Cohen-Adad
- NeuroPoly Lab; Institute of Biomedical Engineering, Polytechnique Montreal; Montreal Quebec Canada
- Functional Neuroimaging Unit, CRIUGM, Université de Montréal; Montreal Quebec Canada
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23
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van der Velden TA, Luijten PR, Klomp DW. Improved fat suppression of the breast using discretized frequency shimming. Magn Reson Med 2017; 79:593-599. [DOI: 10.1002/mrm.26651] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2016] [Revised: 01/24/2017] [Accepted: 01/27/2017] [Indexed: 11/12/2022]
Affiliation(s)
- Tijl A. van der Velden
- Department of Radiology; University Medical Centre Utrecht; 3584CX Utrecht the Netherlands
| | - Peter R. Luijten
- Department of Radiology; University Medical Centre Utrecht; 3584CX Utrecht the Netherlands
| | - Dennis W.J. Klomp
- Department of Radiology; University Medical Centre Utrecht; 3584CX Utrecht the Netherlands
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24
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Gross S, Vionnet L, Kasper L, Dietrich BE, Pruessmann KP. Physiology recording with magnetic field probes for fMRI denoising. Neuroimage 2017; 154:106-114. [PMID: 28088483 DOI: 10.1016/j.neuroimage.2017.01.022] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2016] [Revised: 12/28/2016] [Accepted: 01/10/2017] [Indexed: 10/20/2022] Open
Abstract
Physiological noise originating in cardiovascular and respiratory processes is a substantial confound in BOLD fMRI. When unaccounted for it reduces the temporal SNR and causes error in inferred brain activity and connectivity. Physiology correction typically relies on auxiliary measurements with peripheral devices such as ECG, pulse oximeters, and breathing belts. These require direct skin contact or at least a tight fit, impairing subject comfort and adding to the setup time. In this work, we explore a touch-free alternative for physiology recording, using magnetic detection with NMR field probes. Placed close to the chest such probes offer high sensitivity to cardiovascular and respiratory dynamics without mechanical contact. This is demonstrated by physiology regression in a typical fMRI scenario at 7T, including validation against standard devices. The study confirms essentially equivalent performance of noise models based on conventional recordings and on field probes. It is shown that the field probes may be positioned in the subject's back such that they could be readily integrated in the patient table.
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Affiliation(s)
- Simon Gross
- Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Gloriastrasse 35, 8092 Zurich, Switzerland.
| | - Laetitia Vionnet
- Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Gloriastrasse 35, 8092 Zurich, Switzerland.
| | - Lars Kasper
- Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Gloriastrasse 35, 8092 Zurich, Switzerland; Translational Neuromodeling Unit (TNU), Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Wilfriedstrasse 6, 8032 Zurich, Switzerland.
| | - Benjamin E Dietrich
- Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Gloriastrasse 35, 8092 Zurich, Switzerland.
| | - Klaas P Pruessmann
- Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Gloriastrasse 35, 8092 Zurich, Switzerland.
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25
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Wezel J, Boer VO, van der Velden TA, Webb AG, Klomp DWJ, Versluis MJ, van Osch MJP, Garpebring A. A comparison of navigators, snap-shot field monitoring, and probe-based field model training for correcting B 0 -induced artifacts in T2*-weighted images at 7 T. Magn Reson Med 2016; 78:1373-1382. [PMID: 27859614 DOI: 10.1002/mrm.26524] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2016] [Revised: 09/27/2016] [Accepted: 10/02/2016] [Indexed: 11/06/2022]
Abstract
PURPOSE To compare methods for estimating B0 maps used in retrospective correction of high-resolution anatomical images at ultra-high field strength. The B0 maps were obtained using three methods: (1) 1D navigators and coil sensitivities, (2) field probe (FP) data and a low-order spherical harmonics model, and (3) FP data and a training-based model. METHODS Data from nine subjects were acquired while they performed activities inducing B0 field fluctuations. Estimated B0 fields were compared with reference data, and the reductions of artifacts were compared in corrected T2* images. RESULTS Reduction of sum-of-squares difference relative to a reference image was evaluated, and Method 1 yielded the largest artifact reduction: 27 ± 15%, 20 ± 18% (mean ± 1 standard deviation) for deep breathing and combined deep breathing and hand motion activities. Method 3 performed almost as well (24 ± 18%, 15 ± 17%), provided that adequate training data were used, and Method 2 gave a similar result (21 ± 16%, 19 ± 17%). CONCLUSION This study confirms that all of the investigated methods can be used in retrospective image correction. In terms of image quality, Method 1 had a small advantage, whereas the FP-based methods measured the B0 field slightly more accurately. The specific strengths and weaknesses of FPs and navigators should therefore be considered when determining which B0 -estimation method to use. Magn Reson Med 78:1373-1382, 2017. © 2016 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Joep Wezel
- C.J. Gorter Center for high field MRI, Department of Radiology, Leiden University Medical Center, Leiden, The Netherlands
| | - Vincent O Boer
- Department of Radiology, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Tijl A van der Velden
- Department of Radiology, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Andrew G Webb
- C.J. Gorter Center for high field MRI, Department of Radiology, Leiden University Medical Center, Leiden, The Netherlands
| | - Dennis W J Klomp
- Department of Radiology, University Medical Center Utrecht, Utrecht, The Netherlands
| | | | - Matthias J P van Osch
- C.J. Gorter Center for high field MRI, Department of Radiology, Leiden University Medical Center, Leiden, The Netherlands
| | - Anders Garpebring
- C.J. Gorter Center for high field MRI, Department of Radiology, Leiden University Medical Center, Leiden, The Netherlands.,Department of Radiation Sciences, Umeå University, Umeå, Sweden
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26
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Henning A, Koning W, Fuchs A, Raaijmakers A, Bluemink JJ, van den Berg CAT, Boer VO, Klomp DWJ. (1) H MRS in the human spinal cord at 7 T using a dielectric waveguide transmitter, RF shimming and a high density receive array. NMR IN BIOMEDICINE 2016; 29:1231-1239. [PMID: 27191947 DOI: 10.1002/nbm.3541] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2014] [Revised: 03/22/2016] [Accepted: 03/23/2016] [Indexed: 06/05/2023]
Abstract
Multimodal MRI is the state of the art method for clinical diagnostics and therapy monitoring of the spinal cord, with MRS being an emerging modality that has the potential to detect relevant changes of the spinal cord tissue at an earlier stage and to enhance specificity. Methodological challenges related to the small dimensions and deep location of the human spinal cord inside the human body, field fluctuations due to respiratory motion, susceptibility differences to adjacent tissue such as vertebras and pulsatile flow of the cerebrospinal fluid hinder the clinical application of (1) H MRS to the human spinal cord. Complementary to previous studies that partly addressed these problems, this work aims at enhancing the signal-to-noise ratio (SNR) of (1) H MRS in the human spinal cord. To this end a flexible tight fit high density receiver array and ultra-high field strength (7 T) were combined. A dielectric waveguide and dipole antenna transmission coil allowed for dual channel RF shimming, focusing the RF field in the spinal cord, and an inner-volume saturated semi-LASER sequence was used for robust localization in the presence of B1 (+) inhomogeneity. Herein we report the first 7 T spinal cord (1) H MR spectra, which were obtained in seven independent measurements of 128 averages each in three healthy volunteers. The spectra exhibit high quality (full width at half maximum 0.09 ppm, SNR 7.6) and absence of artifacts and allow for reliable quantification of N-acetyl aspartate (NAA) (NAA/Cr (creatine) 1.31 ± 0.20; Cramér-Rao lower bound (CRLB) 5), total choline containing compounds (Cho) (Cho/Cr 0.32 ± 0.07; CRLB 7), Cr (CRLB 5) and myo-inositol (mI) (mI/Cr 1.08 ± 0.22; CRLB 6) in 7.5 min in the human cervical spinal cord. Thus metabolic information from the spinal cord can be obtained in clinically feasible scan times at 7 T, and its benefit for clinical decision making in spinal cord disorders will be investigated in the future using the presented methodology. Copyright © 2016 John Wiley & Sons, Ltd.
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Affiliation(s)
- A Henning
- Max Plank Institute for Biological Cybernetics, Tübingen, Germany
- Institute for Biomedical Engineering, University and ETH Zurich, Zurich, Switzerland
| | - W Koning
- University Medical Center Utrecht, Utrecht, The Netherlands
| | - A Fuchs
- Institute for Biomedical Engineering, University and ETH Zurich, Zurich, Switzerland
| | - A Raaijmakers
- University Medical Center Utrecht, Utrecht, The Netherlands
| | - J J Bluemink
- University Medical Center Utrecht, Utrecht, The Netherlands
| | | | - V O Boer
- University Medical Center Utrecht, Utrecht, The Netherlands
| | - D W J Klomp
- University Medical Center Utrecht, Utrecht, The Netherlands
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27
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Wijnen JP, Klomp DWJ, Nabuurs CIHC, de Graaf RA, van Kalleveen IML, van der Kemp WJM, Luijten PR, Kruit MC, Webb A, Kan HE, Boer VO. Proton observed phosphorus editing (POPE) for in vivo detection of phospholipid metabolites. NMR IN BIOMEDICINE 2016; 29:1222-1230. [PMID: 26601921 DOI: 10.1002/nbm.3440] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2014] [Revised: 09/03/2015] [Accepted: 10/08/2015] [Indexed: 06/05/2023]
Abstract
The purpose of this article was to compare the sensitivity of proton observed phosphorus editing (POPE) with direct (31) P MRS with Ernst angle excitation for (1) H-(31) P coupled metabolites at 7 T. POPE sequences were developed for detecting phosphocholine (PC), phosphoethanolamine (PE), glycerophosphocholine (GPC), and glycerophosphoethanolamine (GPE) on the (1) H channel, thereby using the enhanced sensitivity of the (1) H nuclei over (31) P detection. Five healthy volunteers were examined with POPE and (31) P-MRS. POPE editing showed a more than doubled sensitivity in an ideal phantom experiment as compared with direct (31) P MRS with Ernst angle excitation. In vivo, despite increased relaxation losses, significant gains in signal-to-noise ratio (SNR) of 30-40% were shown for PE and GPE + PC levels in the human brain. The SNR of GPC was lower in the POPE measurement compared with the (31) P-MRS measurement. Furthermore, selective narrowband editing on the (31) P channel showed the ability to separate the overlapping GPE and PE signals in the (1) H spectrum. POPE can be used for enhanced detection of (1) H-(31) P coupled metabolites in vivo. Copyright © 2015 John Wiley & Sons, Ltd.
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Affiliation(s)
- Jannie P Wijnen
- Department of Radiology, University Medical Centre Utrecht, Utrecht, The Netherlands
- Department of Radiology, Leiden University Medical Centre, Leiden, The Netherlands
| | - Dennis W J Klomp
- Department of Radiology, University Medical Centre Utrecht, Utrecht, The Netherlands
| | | | - Robin A de Graaf
- Department of Radiology, University Medical Centre Utrecht, Utrecht, The Netherlands
- Department of Diagnostic Radiology, Yale University, New Haven, CT, USA
| | | | - Wybe J M van der Kemp
- Department of Radiology, University Medical Centre Utrecht, Utrecht, The Netherlands
| | - Peter R Luijten
- Department of Radiology, University Medical Centre Utrecht, Utrecht, The Netherlands
| | - Mark C Kruit
- Department of Radiology, Leiden University Medical Centre, Leiden, The Netherlands
| | - Andrew Webb
- Department of Radiology, Leiden University Medical Centre, Leiden, The Netherlands
| | - Hermien E Kan
- Department of Radiology, Leiden University Medical Centre, Leiden, The Netherlands
| | - Vincent O Boer
- Department of Radiology, University Medical Centre Utrecht, Utrecht, The Netherlands
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28
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Topfer R, Starewicz P, Lo KM, Metzemaekers K, Jette D, Hetherington HP, Stikov N, Cohen-Adad J. A 24-channel shim array for the human spinal cord: Design, evaluation, and application. Magn Reson Med 2016; 76:1604-1611. [PMID: 27487798 DOI: 10.1002/mrm.26354] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2016] [Revised: 06/07/2016] [Accepted: 07/01/2016] [Indexed: 11/06/2022]
Abstract
PURPOSE A novel multichannel shim array is introduced to improve MRI and spectroscopic studies of the human spinal cord. METHODS Twenty-four-channel shim and 8-channel transceiver arrays were designed to insert into the patient bed table to lie in close proximity to the subject's spine. The reference field patterns of each of the shim channels (Hz/A) were determined empirically via gradient echo field mapping and subsequently used to demonstrate shim performance at 3 Tesla using an ex vivo phantom, which incorporated a fixed human spine. The shim was further demonstrated on five healthy volunteers. RESULTS Application of the shim to the ex vivo phantom reduced the standard deviation of the field over the spinal volume of interest (123.4 cm3 ) from an original 51.3 Hz down to 32.5 Hz, amounting to an improvement in field homogeneity of 36.6%. In vivo, the spine shim resulted in an average improvement in field homogeneity of 63.8 ± 15.4%. CONCLUSION The localized spine shim offers a promising new means of correcting magnetic field distortion in the spinal cord. Magn Reson Med 76:1604-1611, 2016. © 2016 International Society for Magnetic Resonance in Medicine.
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Affiliation(s)
- Ryan Topfer
- Institute of Biomedical Engineering, Polytechnique Montréal, Montreal, Quebec, Canada
| | | | - Kai-Ming Lo
- Resonance Research Inc., Billerica, Massachusetts, USA
| | | | - Donald Jette
- Resonance Research Inc., Billerica, Massachusetts, USA
| | - Hoby P Hetherington
- Department of Radiology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA
| | - Nikola Stikov
- Institute of Biomedical Engineering, Polytechnique Montréal, Montreal, Quebec, Canada.,Montreal Heart Institute, Université de Montréal, Montreal, Quebec, Canada
| | - Julien Cohen-Adad
- Institute of Biomedical Engineering, Polytechnique Montréal, Montreal, Quebec, Canada. .,Functional Neuroimaging Unit, CRIUGM, Université de Montréal, Montreal, Quebec, Canada.
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29
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Orlova A, Frings P, Suleiman M, Rikken GLJA. New high homogeneity 55T pulsed magnet for high field NMR. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2016; 268:82-87. [PMID: 27179456 DOI: 10.1016/j.jmr.2016.04.016] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2016] [Revised: 04/28/2016] [Accepted: 04/29/2016] [Indexed: 06/05/2023]
Abstract
Pulsed magnets can produce magnetic fields largely exceeding those achieved with resistive or even hybrid magnets. This kind of magnet is indispensable in studies of field-induced phenomena which occur only in high magnetic field. A new high homogeneous pulsed magnet capable of producing field up to 55T and specially designed for NMR experiments was built and tested. Experimentally observed homogeneity of magnetic field in central part of the magnet is 10ppm over a sample volume of 2-3mm(3) at 12T and 30ppm at 47T, which are the best values ever reported for a pulsed magnet. Reasons which affect the field profile and reduce homogeneity at high field are discussed.
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Affiliation(s)
- A Orlova
- Laboratoire National des Champs Magnétiques Intenses, Grenoble, France.
| | - P Frings
- Laboratoire National des Champs Magnétiques Intenses, Grenoble, France
| | - M Suleiman
- Laboratoire National des Champs Magnétiques Intenses, Grenoble, France
| | - G L J A Rikken
- Laboratoire National des Champs Magnétiques Intenses, Grenoble, France
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30
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Graaf RA, Klomp DWJ, Luijten PR, Boer VO. Intramolecular zero-quantum-coherence 2D NMR spectroscopy of lipids in the human breast at 7 T. Magn Reson Med 2016; 71:451-7. [PMID: 23468435 DOI: 10.1002/mrm.24701] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
PURPOSE Intramolecular zero-quantum-coherences (ZQCs) are intrinsically insensitive toward magnetic field inhomogeneity. This fact is used to quantify and characterize lipid signals in the human breast at 7 T despite the presence of severe magnetic field inhomogeneity caused by water-lipid susceptibility boundaries. METHODS A novel 3D localized 2D ZQC method is presented. The combination of cardiac/respiratory triggering and post-acquisition navigator echo correction provides high-quality 2D NMR spectra in vivo. RESULTS The lipid profile of the human breast could be quantified by 2D ZQC NMR in 100% of the subjects despite a wide range of magnetic field homogeneity. With conventional 1D (1)H MRS, the magnetic field homogeneity was only adequate in 60% of the subjects. The results from 2D ZQC NMR and 1D NMR are in good correspondence, both in vitro and in vivo. CONCLUSION It has been demonstrated that high quality and quantitative 2D ZQC NMR spectra can be acquired from human breast tissue at 7 T. While the simplicity and sensitivity of 1D MRS are preferable when the magnetic field homogeneity is adequate, the 2D ZQC method provides a viable alternative in cases where this requirement cannot be met.
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Affiliation(s)
- Robin A Graaf
- Department of Radiology, UMC Utrecht, Utrecht, The Netherlands; Department of Diagnostic Radiology, Magnetic Resonance Research Center, Yale University, New Haven, Connecticut, USA
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31
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Menezes GLG, Stehouwer BL, Klomp DWJ, van der Velden TA, van den Bosch MAAJ, Knuttel FM, Boer VO, van der Kemp WJM, Luijten PR, Veldhuis WB. Dynamic contrast-enhanced breast MRI at 7T and 3T: an intra-individual comparison study. SPRINGERPLUS 2016; 5:13. [PMID: 26759752 PMCID: PMC4700043 DOI: 10.1186/s40064-015-1654-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/16/2015] [Accepted: 12/21/2015] [Indexed: 01/01/2023]
Abstract
The aim of this study is to compare the current state of lesion identification, the BI-RADS classification and the contrast-enhancement behavior at 7T and 3T breast MRI in the same patient group. Twenty-seven patients with thirty suspicious lesions were selected for this prospective study and underwent both 7T and 3T MRI. All examinations were rated by two radiologists (R1 and R2) independently on image quality, lesion identification and BI-RADS classification. We assessed sensitivity, specificity, NPV and PPV, observer agreement, lesion sizes, and contrast-enhancement-to-noise ratios (CENRs) of mass lesions. Fifteen of seventeen histopathological proven malignant lesions were detected at both field strengths. Image quality of the dynamic series was good at 7T, and excellent at 3T (P = 0.001 for R1 and P = 0.88 for R2). R1 found higher rates of specificity, NPV and PPV at 7T when compared to 3T, while R2 found the same results for sensitivity, specificity, NPV and PPV for both field strengths. The observers showed excellent agreement for BI-RADS categories at 7T (κ = 0.86) and 3T (κ = 0.93). CENRs were higher at 7T (P = 0.015). Lesion sizes were bigger at 7T according to R2 (P = 0.039). Our comparison study shows that 7T MRI allows BI-RADS conform analysis. Technical improvements, such as acquisition of T2w sequences and adjustment of B1+ field inhomogeneity, are still necessary to allow clinical use of 7T breast MRI.
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Affiliation(s)
- Gisela L G Menezes
- Department of Radiology and Nuclear Medicine, University Medical Centre Utrecht, P.O. Box 85500, 3508 GA Utrecht, The Netherlands
| | - Bertine L Stehouwer
- Department of Radiology and Nuclear Medicine, University Medical Centre Utrecht, P.O. Box 85500, 3508 GA Utrecht, The Netherlands
| | - Dennis W J Klomp
- Department of Radiology and Nuclear Medicine, University Medical Centre Utrecht, P.O. Box 85500, 3508 GA Utrecht, The Netherlands
| | - Tijl A van der Velden
- Department of Radiology and Nuclear Medicine, University Medical Centre Utrecht, P.O. Box 85500, 3508 GA Utrecht, The Netherlands
| | - Maurice A A J van den Bosch
- Department of Radiology and Nuclear Medicine, University Medical Centre Utrecht, P.O. Box 85500, 3508 GA Utrecht, The Netherlands
| | - Floortje M Knuttel
- Department of Radiology and Nuclear Medicine, University Medical Centre Utrecht, P.O. Box 85500, 3508 GA Utrecht, The Netherlands
| | - Vincent O Boer
- Department of Radiology and Nuclear Medicine, University Medical Centre Utrecht, P.O. Box 85500, 3508 GA Utrecht, The Netherlands
| | - Wybe J M van der Kemp
- Department of Radiology and Nuclear Medicine, University Medical Centre Utrecht, P.O. Box 85500, 3508 GA Utrecht, The Netherlands
| | - Peter R Luijten
- Department of Radiology and Nuclear Medicine, University Medical Centre Utrecht, P.O. Box 85500, 3508 GA Utrecht, The Netherlands
| | - Wouter B Veldhuis
- Department of Radiology and Nuclear Medicine, University Medical Centre Utrecht, P.O. Box 85500, 3508 GA Utrecht, The Netherlands
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32
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van der Velden TA, Schmitz AMT, Gilhuijs KGA, Veldhuis WB, Luijten PR, Boer VO, Klomp DWJ. Fat suppression techniques for obtaining high resolution dynamic contrast enhanced bilateral breast MR images at 7T. Magn Reson Imaging 2015; 34:462-8. [PMID: 26708033 DOI: 10.1016/j.mri.2015.12.012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2015] [Accepted: 12/13/2015] [Indexed: 10/22/2022]
Abstract
OBJECTIVES To compare water selective excitation (WSE) and Dixon fat suppression in the context of high-resolution dynamic contrast enhanced MRI of the breast at 7T. METHODS Ten healthy volunteers and one patient with a malignant breast lesion were scanned at 7T. The MRI protocol contained 3D T1-weighted gradient echo images obtained with both WSE fat suppression, multi echo Dixon fat suppression, and without fat suppression. Images were acquired at a (0.8mm)(3) or (0.7mm)(3) isotropic resolution with equal field of view and optimized such to obtain a maximal SNR. Image quality was scored qualitatively on overall image quality, sharpness of anatomical details, presence of artifacts, inhomogeneous fat suppression and the presence of water-fat shift. A quantitative scoring was obtained from the signal to noise ratio and contrast to noise ratio. RESULTS WSE scored significantly better in terms of overall image quality and the absence of artifacts. No significant difference in contrast to noise ratio was found between the two fat suppression methods. CONCLUSION When maximizing temporal and spatial resolution of high resolution DCE MRI of the breast, water selective excitation provides better image quality than multi echo Dixon at 7T.
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Affiliation(s)
- Tijl A van der Velden
- University Medical Center Utrecht, Department of Radiology, Heidelberglaan 100, 3584CX, Utrecht, the Netherlands.
| | - Alexander M Th Schmitz
- University Medical Center Utrecht, Department of Radiology, Heidelberglaan 100, 3584CX, Utrecht, the Netherlands; University Medical Center Utrecht, Image Sciences Institute, Heidelberglaan 100, 3584CX, Utrecht, the Netherlands
| | - Kenneth G A Gilhuijs
- University Medical Center Utrecht, Department of Radiology, Heidelberglaan 100, 3584CX, Utrecht, the Netherlands; University Medical Center Utrecht, Image Sciences Institute, Heidelberglaan 100, 3584CX, Utrecht, the Netherlands
| | - Wouter B Veldhuis
- University Medical Center Utrecht, Department of Radiology, Heidelberglaan 100, 3584CX, Utrecht, the Netherlands
| | - Peter R Luijten
- University Medical Center Utrecht, Department of Radiology, Heidelberglaan 100, 3584CX, Utrecht, the Netherlands
| | - Vincent O Boer
- Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Hvidovre, Kettegaard Allé 30, DK-2650, Hvidovre, Denmark
| | - Dennis W J Klomp
- University Medical Center Utrecht, Department of Radiology, Heidelberglaan 100, 3584CX, Utrecht, the Netherlands
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33
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Považan M, Hangel G, Strasser B, Gruber S, Chmelik M, Trattnig S, Bogner W. Mapping of brain macromolecules and their use for spectral processing of 1 H-MRSI data with an ultra-short acquisition delay at 7 T. Neuroimage 2015. [DOI: 10.1016/j.neuroimage.2015.07.042] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
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34
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Andersen M, Hanson LG, Madsen KH, Wezel J, Boer V, van der Velden T, van Osch MJP, Klomp D, Webb AG, Versluis MJ. Measuring motion-induced B0 -fluctuations in the brain using field probes. Magn Reson Med 2015; 75:2020-30. [PMID: 26073175 DOI: 10.1002/mrm.25802] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2015] [Revised: 05/04/2015] [Accepted: 05/24/2015] [Indexed: 12/13/2022]
Abstract
PURPOSE Fluctuations of the background magnetic field (B0 ) due to body and breathing motion can lead to significant artifacts in brain imaging at ultrahigh field. Corrections based on real-time sensing using external field probes show great potential. This study evaluates different aspects of field interpolation from these probes into the brain which is implicit in such methods. Measurements and simulations were performed to quantify how well B0 -fluctuations in the brain due to body and breathing motion are reflected in external field probe measurements. METHODS Field probe measurements were compared with scanner acquired B0 -maps from experiments with breathing and shoulder movements. A realistic simulation of B0 -fluctuations caused by breathing was performed, and used for testing different sets of field probe positions. RESULTS The B0 -fluctuations were well reflected in the field probe measurements in the shoulder experiments, while the breathing experiments showed only moderate correspondence. The simulations showed the importance of the probe positions, and that performing full 3(rd) order corrections based on 16 field probes is not recommended. CONCLUSION Methods for quantitative assessment of the field interpolation problem were developed and demonstrated. Field corrections based on external field measurements show great potential, although potential pitfalls were identified.
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Affiliation(s)
- Mads Andersen
- Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Hvidovre, Denmark.,Biomedical Engineering Group, DTU Elektro, Technical University of Denmark, Kgs Lyngby, Denmark
| | - Lars G Hanson
- Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Hvidovre, Denmark.,Biomedical Engineering Group, DTU Elektro, Technical University of Denmark, Kgs Lyngby, Denmark
| | - Kristoffer H Madsen
- Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Hvidovre, Denmark
| | - Joep Wezel
- C.J. Gorter Center, Department of Radiology, Leiden University Medical Center, Leiden, The Netherlands
| | - Vincent Boer
- Department of Radiology, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Tijl van der Velden
- Department of Radiology, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Matthias J P van Osch
- C.J. Gorter Center, Department of Radiology, Leiden University Medical Center, Leiden, The Netherlands
| | - Dennis Klomp
- Department of Radiology, University Medical Center Utrecht, Utrecht, The Netherlands
| | - Andrew G Webb
- C.J. Gorter Center, Department of Radiology, Leiden University Medical Center, Leiden, The Netherlands
| | - Maarten J Versluis
- C.J. Gorter Center, Department of Radiology, Leiden University Medical Center, Leiden, The Netherlands.,Philips Healthcare, Best, The Netherlands
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35
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Arteaga de Castro CS, Boer VO, Luttje MP, van der Velden TA, Bhogal A, van Vulpen M, Luijten PR, van der Heide UA, Klomp DWJ. Temporal B0 field variation effects on MRSI of the human prostate at 7 T and feasibility of correction using an internal field probe. NMR IN BIOMEDICINE 2014; 27:1353-1360. [PMID: 25212868 DOI: 10.1002/nbm.3197] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2013] [Revised: 06/05/2014] [Accepted: 07/30/2014] [Indexed: 06/03/2023]
Abstract
Spectral degradations as a result of temporal field variations are observed in MRSI of the human prostate. Moving organs generate substantial temporal and spatial field fluctuations as a result of susceptibility mismatch with the surrounding tissue (i.e. periodic breathing, cardiac motion or random bowel motion). Nine patients with prostate cancer were scanned with an endorectal coil (ERC) on a 7-T MR scanner. Temporal B0 field variations were observed with fast dynamic B0 mapping in these patients. Simulations of dynamic B0 corrections were performed using zero- to second-order shim terms. In addition, the temporal B0 variations were applied to simulated MR spectra causing, on average, 15% underestimation of the choline/citrate ratio. Linewidth distortions and frequency shifts (up to 30 and 8 Hz, respectively) were observed. To demonstrate the concept of observing local field fluctuations in real time during MRSI data acquisition, a field probe (FP) tuned and matched for the (19) F frequency was incorporated into the housing of the ERC. The data acquired with the FP were compared with the B0 field map data and used to correct the MRSI datasets retrospectively. The dynamic B0 mapping data showed variations of up to 30 Hz (0.1 ppm) over 72 s at 7 T. The simulated zero-order corrections, calculated as the root mean square, reduced the standard deviation (SD) of the dynamic variations by an average of 41%. When using second-order corrections, the reduction in the SD was, on average, 56%. The FP data showed the same variation range as the dynamic B0 data and the variation patterns corresponded. After retrospective correction, the MRSI data showed artifact reduction and improved spectral resolution. B0 variations can degrade the MRSI substantially. The simple incorporation of an FP into an ERC can improve prostate cancer MRSI without prior knowledge of the origin of the dynamic field distortions.
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36
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Vannesjo SJ, Wilm BJ, Duerst Y, Gross S, Brunner DO, Dietrich BE, Schmid T, Barmet C, Pruessmann KP. Retrospective correction of physiological field fluctuations in high-field brain MRI using concurrent field monitoring. Magn Reson Med 2014; 73:1833-43. [DOI: 10.1002/mrm.25303] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2013] [Revised: 04/08/2014] [Accepted: 05/08/2014] [Indexed: 12/12/2022]
Affiliation(s)
- S. Johanna Vannesjo
- Institute for Biomedical Engineering, University and ETH Zurich; Zurich Switzerland
| | - Bertram J. Wilm
- Institute for Biomedical Engineering, University and ETH Zurich; Zurich Switzerland
| | - Yolanda Duerst
- Institute for Biomedical Engineering, University and ETH Zurich; Zurich Switzerland
| | - Simon Gross
- Institute for Biomedical Engineering, University and ETH Zurich; Zurich Switzerland
| | - David O. Brunner
- Institute for Biomedical Engineering, University and ETH Zurich; Zurich Switzerland
| | - Benjamin E. Dietrich
- Institute for Biomedical Engineering, University and ETH Zurich; Zurich Switzerland
| | | | - Christoph Barmet
- Institute for Biomedical Engineering, University and ETH Zurich; Zurich Switzerland
- Skope Magnetic Resonance Technologies; Zurich Switzerland
| | - Klaas P. Pruessmann
- Institute for Biomedical Engineering, University and ETH Zurich; Zurich Switzerland
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Boer VO, Luttje MP, Luijten PR, Klomp DWJ. Requirements for static and dynamic higher order B0 shimming of the human breast at 7 T. NMR IN BIOMEDICINE 2014; 27:625-631. [PMID: 24615920 DOI: 10.1002/nbm.3096] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2013] [Revised: 01/09/2014] [Accepted: 01/23/2014] [Indexed: 06/03/2023]
Abstract
The increased magnetic susceptibility effects at higher magnetic fields increase the demands for shimming of the B0 field for in vivo MRI and MRS. Both static and dynamic techniques have been developed to compensate for susceptibility-induced field inhomogeneities. In this study, we investigate the impact of and need for both static and dynamic higher order B0 shimming of magnetic field homogeneities in clinical breast MRI at 7 T. Both global and local field variations at lipid-tissue interfaces were observed in the magnetic field using TE-optimized B0 mapping at 7 T. With static B0 shimming, a field homogeneity of 39 ± 11 Hz (n = 48) was reached in a single breast using second-order shimming. Further compensation of the residual local field inhomogeneities caused by lipid-tissue interfaces does not seem to be feasible with shallow spherical harmonic fields. For bilateral shimming, the shimming quality was significantly less at 62 ± 15 Hz (n = 22) over both breasts, even after (simulated) fourth-order shimming. In addition, a substantial time-dependent field instability of 30 Hz peak to peak, with significant higher order field contributions, was observed during regular breathing. In conclusion, TE-optimized B0 field mapping reveals substantial field variations in the lipid-rich environment of the human breast, in both space and time. The static field variations could be partially minimized by third-order B0 shimming, providing sufficient lipid suppression. However, in order to fully benefit from the increased spectral dispersion at high fields, the significant magnetic field variations during breathing need to be considered.
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Affiliation(s)
- Vincent O Boer
- Department of Radiology, University Medical Center Utrecht, the Netherlands
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de Leeuw H, Stehouwer BL, Bakker CJG, Klomp DWJ, van Diest PJ, Luijten PR, Seevinck PR, van den Bosch MAAJ, Viergever MA, Veldhuis WB. Detecting breast microcalcifications with high-field MRI. NMR IN BIOMEDICINE 2014; 27:539-546. [PMID: 24535752 DOI: 10.1002/nbm.3089] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2013] [Revised: 01/10/2014] [Accepted: 01/10/2014] [Indexed: 06/03/2023]
Abstract
The aim of this study was to detect microcalcifications in human whole breast specimens using high-field MRI. Four mastectomy specimens, obtained with approval of the institutional review board, were subjected to gradient-echo MRI acquisitions on a high-field MR scanner. The phase derivative was used to detect microcalcifications. The echo time and imaging resolution were varied to study the sensitivity of the proposed method. Computed tomography images of the mastectomy specimens and prior acquired mammography images were used to validate the results. A template matching algorithm was designed to detect microcalcifications automatically. The three spatial derivatives of the signal phase surrounding a field-perturbing object allowed three-dimensional localization, as well as the discrimination of diamagnetic field-perturbing objects, such as calcifications, and paramagnetic field-perturbing structures, e.g. blood. A longer echo time enabled smaller disturbances to be detected, but also resulted in shading as a result of other field-disturbing materials. A higher imaging resolution increased the detection sensitivity. Microcalcifications in a linear branching configuration that spanned over 8 mm in length were detected. After manual correction, the automatic detection tool identified up to 18 microcalcifications within the samples, which was in close agreement with the number of microcalcifications found on previously acquired in vivo mammography images. Microcalcifications can be detected by MRI in human whole breast specimens by the application of phase derivative imaging.
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Affiliation(s)
- Hendrik de Leeuw
- Image Sciences Institute, University Medical Center Utrecht, Utrecht, the Netherlands; Department of Radiology, Erasmus Medical Center Rotterdam, Rotterdam, the Netherlands
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39
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Duerst Y, Wilm BJ, Dietrich BE, Vannesjo SJ, Barmet C, Schmid T, Brunner DO, Pruessmann KP. Real-time feedback for spatiotemporal field stabilization in MR systems. Magn Reson Med 2014; 73:884-93. [PMID: 24634192 DOI: 10.1002/mrm.25167] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2013] [Revised: 12/21/2013] [Accepted: 01/14/2014] [Indexed: 11/10/2022]
Abstract
PURPOSE MR imaging and spectroscopy require a highly stable, uniform background field. The field stability is typically limited by hardware imperfections, external perturbations, or field fluctuations of physiological origin. The purpose of the present work is to address these issues by introducing spatiotemporal field stabilization based on real-time sensing and feedback control. METHODS An array of NMR field probes is used to sense the field evolution in a whole-body MR system concurrently with regular system operation. The field observations serve as inputs to a proportional-integral controller that governs correction currents in gradient and higher-order shim coils such as to keep the field stable in a volume of interest. RESULTS The feedback system was successfully set up, currently reaching a minimum latency of 20 ms. Its utility is first demonstrated by countering thermal field drift during an EPI protocol. It is then used to address respiratory field fluctuations in a T2 *-weighted brain exam, resulting in substantially improved image quality. CONCLUSION Feedback field control is an effective means of eliminating dynamic field distortions in MR systems. Third-order spatial control at an update time of 100 ms has proven sufficient to largely eliminate thermal and breathing effects in brain imaging at 7 Tesla.
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Affiliation(s)
- Yolanda Duerst
- Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Switzerland
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41
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Esmaeili M, Moestue SA, Hamans BC, Veltien A, Kristian A, Engebråten O, Maelandsmo GM, Gribbestad IS, Bathen TF, Heerschap A. In vivo ³¹P magnetic resonance spectroscopic imaging (MRSI) for metabolic profiling of human breast cancer xenografts. J Magn Reson Imaging 2014; 41:601-9. [PMID: 24532410 DOI: 10.1002/jmri.24588] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2013] [Accepted: 01/20/2014] [Indexed: 01/05/2023] Open
Abstract
PURPOSE To study cancer associated with abnormal metabolism of phospholipids, of which several have been proposed as biomarkers for malignancy or to monitor response to anticancer therapy. We explored 3D (31) P magnetic resonance spectroscopic imaging (MRSI) at high magnetic field for in vivo assessment of individual phospholipids in two patient-derived breast cancer xenografts representing good and poor prognosis (luminal- and basal-like tumors). MATERIALS AND METHODS Metabolic profiles from luminal-like and basal-like xenograft tumors were obtained in vivo using 3D (31) P MRSI at 11.7T and from tissue extracts in vitro at 14.1T. Gene expression analysis was performed in order to support metabolic differences between the two xenografts. RESULTS In vivo (31) P MR spectra were obtained in which the prominent resonances from phospholipid metabolites were detected at a high signal-to-noise ratio (SNR >7.5). Metabolic profiles obtained in vivo were in agreement with those obtained in vitro and could be used to discriminate between the two xenograft models, based on the levels of phosphocholine, phosphoethanolamine, glycerophosphocholine, and glycerophosphoethanolamine. The differences in phospholipid metabolite concentration could partly be explained by gene expression profiles. CONCLUSION Noninvasive metabolic profiling by 3D (31) P MRSI can discriminate between subtypes of breast cancer based on different concentrations of choline- and ethanolamine-containing phospholipids.
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Affiliation(s)
- Morteza Esmaeili
- Department of Circulation and Medical Imaging, Norwegian University of Science and Technology (NTNU), Trondheim, Norway
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42
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Bogner W, Hess AT, Gagoski B, Tisdall MD, van der Kouwe AJW, Trattnig S, Rosen B, Andronesi OC. Real-time motion- and B0-correction for LASER-localized spiral-accelerated 3D-MRSI of the brain at 3T. Neuroimage 2013; 88:22-31. [PMID: 24201013 DOI: 10.1016/j.neuroimage.2013.09.034] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2013] [Revised: 09/06/2013] [Accepted: 09/14/2013] [Indexed: 02/03/2023] Open
Abstract
The full potential of magnetic resonance spectroscopic imaging (MRSI) is often limited by localization artifacts, motion-related artifacts, scanner instabilities, and long measurement times. Localized adiabatic selective refocusing (LASER) provides accurate B1-insensitive spatial excitation even at high magnetic fields. Spiral encoding accelerates MRSI acquisition, and thus, enables 3D-coverage without compromising spatial resolution. Real-time position- and shim/frequency-tracking using MR navigators correct motion- and scanner instability-related artifacts. Each of these three advanced MRI techniques provides superior MRSI data compared to commonly used methods. In this work, we integrated in a single pulse sequence these three promising approaches. Real-time correction of motion, shim, and frequency-drifts using volumetric dual-contrast echo planar imaging-based navigators were implemented in an MRSI sequence that uses low-power gradient modulated short-echo time LASER localization and time efficient spiral readouts, in order to provide fast and robust 3D-MRSI in the human brain at 3T. The proposed sequence was demonstrated to be insensitive to motion- and scanner drift-related degradations of MRSI data in both phantoms and volunteers. Motion and scanner drift artifacts were eliminated and excellent spectral quality was recovered in the presence of strong movement. Our results confirm the expected benefits of combining a spiral 3D-LASER-MRSI sequence with real-time correction. The new sequence provides accurate, fast, and robust 3D metabolic imaging of the human brain at 3T. This will further facilitate the use of 3D-MRSI for neuroscience and clinical applications.
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Affiliation(s)
- Wolfgang Bogner
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA; MR Center of Excellence, Department of Radiology, Medical University Vienna, Vienna, Austria.
| | - Aaron T Hess
- Department of Cardiovascular Medicine, John Radcliffe Hospital, University of Oxford Centre for Clinical Magnetic Resonance Research, Oxford, UK
| | - Borjan Gagoski
- Fetal-Neonatal Neuroimaging & Developmental Science Center, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA
| | - M Dylan Tisdall
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA
| | - Andre J W van der Kouwe
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA
| | - Siegfried Trattnig
- MR Center of Excellence, Department of Radiology, Medical University Vienna, Vienna, Austria
| | - Bruce Rosen
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA
| | - Ovidiu C Andronesi
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.
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43
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Regatte RR. Why buy an expensive ($7 million) 7T MRI system for biomedical research? J Magn Reson Imaging 2013; 40:280-2. [PMID: 24123421 DOI: 10.1002/jmri.24444] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2013] [Accepted: 09/11/2013] [Indexed: 12/26/2022] Open
Affiliation(s)
- Ravinder R Regatte
- Quantitative Multinuclear Musculoskeletal Imaging Group (QMMIG), Center for Biomedical Imaging, Department of Radiology, New York University Langone Medical Center, New York, NY, USA
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van der Kemp WJM, Boer VO, Luijten PR, Stehouwer BL, Veldhuis WB, Klomp DWJ. Adiabatic multi-echo ³¹P spectroscopic imaging (AMESING) at 7 T for the measurement of transverse relaxation times and regaining of sensitivity in tissues with short T₂ values. NMR IN BIOMEDICINE 2013; 26:1299-307. [PMID: 23553945 DOI: 10.1002/nbm.2952] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2012] [Revised: 02/27/2013] [Accepted: 02/28/2013] [Indexed: 05/12/2023]
Abstract
An adiabatic multi-echo spectroscopic imaging (AMESING) sequence, used for (31) P MRSI, with spherical k-space sampling and compensated phase-encoding gradients, was implemented on a whole-body 7-T MR system. One free induction decay (FID) and up to five symmetric echoes can be acquired with this sequence. In tissues with low T2 and high T2 , this can theoretically lead to a potential maximum signal-to-noise ratio (SNR) increase of almost a factor of three, compared with a conventional FID acquisition with Ernst-angle excitation. However, with T2 values being, in practice, ≤400 ms, a maximum enhancement of approximately two compared with low flip Ernst-angle excitation should be feasible. The multi-echo sequence enables the determination of localized T2 values, and was validated with (31) P three-dimensional MRSI on the calf muscle and breast of a healthy volunteer, and subsequently applied in a patient with breast cancer. The T2 values of phosphocreatine, phosphodiesters (PDE) and inorganic phosphate in calf muscle were 193 ± 5 ms, 375 ± 44 ms and 96 ± 10 ms, respectively, and the apparent T2 value of γ-ATP was 25 ± 6 ms. A T2 value of 136 ± 15 ms for inorganic phosphate was measured in glandular breast tissue of a healthy volunteer. The T2 values of phosphomonoesters (PME) and PDE in breast cancer tissue (ductulolobular carcinoma) ranged between 170 and 210 ms, and the PME to PDE ratios were calculated to be phosphoethanolamine/glycerophosphoethanolamine = 2.7, phosphocholine/glycerophosphocholine = 1.8 and PME/PDE = 2.3. Considering the relatively short T2 values of the metabolites in breast tissue at 7 T, the echo spacing can be short without compromising spectral resolution, whilst maximizing the sensitivity.
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Affiliation(s)
- W J M van der Kemp
- Image Sciences Institute, Department of Radiology, University Medical Center Utrecht, Utrecht, the Netherlands
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45
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Gilbert KM, Martyn Klassen L, Menon RS. A low-cost, mechanically simple apparatus for measuring eddy current-induced magnetic fields in MRI. NMR IN BIOMEDICINE 2013; 26:1285-1290. [PMID: 23526761 DOI: 10.1002/nbm.2950] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2013] [Revised: 02/13/2013] [Accepted: 02/26/2013] [Indexed: 06/02/2023]
Abstract
The fidelity of gradient waveforms in MRI pulse sequences is essential to the acquisition of images and spectra with minimal distortion artefacts. Gradient waveforms can become nonideal when eddy currents are created in nearby conducting structures; however, the resultant magnetic fields can be characterised and compensated for by measuring the spatial and temporal field response following a gradient impulse. This can be accomplished using a grid of radiofrequency (RF) coils. The RF coils must adhere to strict performance requirements: they must achieve a high sensitivity and signal-to-noise ratio (SNR), have minimal susceptibility field gradients between the sample and surrounding material interfaces and be highly decoupled from each other. In this study, an apparatus is presented that accomplishes these tasks with a low-cost, mechanically simple solution. The coil system consists of six transmit/receive RF coils immersed in a high-molarity saline solution. The sensitivity and SNR following an excitation pulse are sufficiently high to allow accurate phase measurements during free-induction decays; the intrinsic susceptibility matching of the materials, because of the unique design of the coil system, results in sufficiently narrow spectral line widths (mean of 19 Hz), and adjacent RF coils are highly decoupled (mean S12 of -47 dB). The temporal and spatial distributions of eddy currents following a gradient pulse are measured to validate the efficacy of the design, and the resultant amplitudes and time constants required for zeroth- and first-order compensation are provided.
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Affiliation(s)
- Kyle M Gilbert
- Robarts Research Institute, The University of Western Ontario, London, ON, Canada
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46
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Klomp DWJ, Dula AN, Arlinghaus LR, Italiaander M, Dortch RD, Zu Z, Williams JM, Gochberg DF, Luijten PR, Gore JC, Yankeelov TE, Smith SA. Amide proton transfer imaging of the human breast at 7T: development and reproducibility. NMR IN BIOMEDICINE 2013; 26:1271-7. [PMID: 23559550 PMCID: PMC3726578 DOI: 10.1002/nbm.2947] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2012] [Revised: 02/07/2013] [Accepted: 02/19/2013] [Indexed: 05/03/2023]
Abstract
Chemical exchange saturation transfer (CEST) can offer information about protons associated with mobile proteins through the amide proton transfer (APT) effect, which has been shown to discriminate tumor from healthy tissue and, more recently, has been suggested as a prognosticator of response to therapy. Despite this promise, APT effects are small (only a few percent of the total signal), and APT imaging is often prone to artifacts resulting from system instability. Here we present a procedure that enables the detection of APT effects in the human breast at 7T while mitigating these issues. Adequate signal-to-noise ratio (SNR) was achieved via an optimized quadrature RF breast coil and 3D acquisitions. To reduce the influence of fat, effective fat suppression schemes were developed that did not degrade SNR. To reduce the levels of ghosting artifacts, dummy scans have been integrated into the scanning protocol. Compared with results obtained at 3T, the standard deviation of the measured APT effect was reduced by a factor of four at 7T, allowing for the detection of APT effects with a standard deviation of 1% in the human breast at 7T. Together, these results demonstrate that the APT effect can be reliably detected in the healthy human breast with a high level of precision at 7T.
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Affiliation(s)
- Dennis W. J. Klomp
- Department of Radiology, University Medical Center Utrecht, Utrecht, the Netherlands
- Institute of Imaging Science, Vanderbilt, Nashville, USA
| | - Adrienne N. Dula
- Institute of Imaging Science, Vanderbilt, Nashville, USA
- Department of Radiology and Radiological Sciences, Vanderbilt, Nashville, USA
| | | | - Michel Italiaander
- Department of Radiology, University Medical Center Utrecht, Utrecht, the Netherlands
| | - Richard D. Dortch
- Institute of Imaging Science, Vanderbilt, Nashville, USA
- Department of Radiology and Radiological Sciences, Vanderbilt, Nashville, USA
| | - Zhongliang Zu
- Institute of Imaging Science, Vanderbilt, Nashville, USA
| | - Jason M. Williams
- Institute of Imaging Science, Vanderbilt, Nashville, USA
- Department of Radiology and Radiological Sciences, Vanderbilt, Nashville, USA
| | | | - Peter R. Luijten
- Department of Radiology, University Medical Center Utrecht, Utrecht, the Netherlands
| | - John C. Gore
- Institute of Imaging Science, Vanderbilt, Nashville, USA
- Department of Radiology and Radiological Sciences, Vanderbilt, Nashville, USA
- Department of Biomedical Engineering, Vanderbilt, Nashville, USA
- Department of Molecular Physiology and Biophysics, Vanderbilt, Nashville, USA
- Department of Physics, Vanderbilt, Nashville, USA
| | - Thomas E. Yankeelov
- Institute of Imaging Science, Vanderbilt, Nashville, USA
- Department of Radiology and Radiological Sciences, Vanderbilt, Nashville, USA
- Department of Biomedical Engineering, Vanderbilt, Nashville, USA
- Department of Physics, Vanderbilt, Nashville, USA
- Department of Cancer Biology, Vanderbilt, Nashville, USA
| | - Seth A. Smith
- Institute of Imaging Science, Vanderbilt, Nashville, USA
- Department of Radiology and Radiological Sciences, Vanderbilt, Nashville, USA
- Department of Biomedical Engineering, Vanderbilt, Nashville, USA
- Department of Physics, Vanderbilt, Nashville, USA
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Hock A, Henning A, Boesiger P, Kollias S. (1)H-MR spectroscopy in the human spinal cord. AJNR Am J Neuroradiol 2013; 34:1682-9. [PMID: 23237857 PMCID: PMC7965644 DOI: 10.3174/ajnr.a3342] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2012] [Accepted: 07/25/2012] [Indexed: 12/14/2022]
Abstract
SUMMARY MR spectroscopy allows insight into the chemical composition of human tissue noninvasively. Thereby it can help to better characterize pathologic processes affecting the spinal cord and may provide important clinical markers for differential diagnosis. However, due to technical challenges, it has been rarely applied to the spinal cord. The aim of this review was to summarize the technical development and clinical studies using MR spectroscopy in the spinal cord. Main challenges of applying MR spectroscopy in the spinal cord are discussed, and a description of a state-of-the-art scan protocol is given. In conclusion, MR spectroscopy is a promising tool for research and diagnosis of the spinal cord because it can provide additional information complementary to other noninvasive imaging methods. However, the application of MR spectroscopy in the spinal cord is not straightforward, and great care is required to attain optimal spectral quality.
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Affiliation(s)
- A. Hock
- From the Institute of Neuroradiology (A. Hock, S.S.K.), University of Zurich, Zurich, Switzerland
- Institute for Biomedical Engineering (A. Hock, A. Henning, P.B.), University and ETH Zurich (Swiss Federal Institute of Technology), Zurich, Switzerland
| | - A. Henning
- Institute for Biomedical Engineering (A. Hock, A. Henning, P.B.), University and ETH Zurich (Swiss Federal Institute of Technology), Zurich, Switzerland
| | - P. Boesiger
- Institute for Biomedical Engineering (A. Hock, A. Henning, P.B.), University and ETH Zurich (Swiss Federal Institute of Technology), Zurich, Switzerland
| | - S.S. Kollias
- From the Institute of Neuroradiology (A. Hock, S.S.K.), University of Zurich, Zurich, Switzerland
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Price AN, Malik SJ, Broadhouse KM, Finnemore AE, Durighel G, Cox DJ, Edwards AD, Groves AM, Hajnal JV. Neonatal cardiac MRI using prolonged balanced SSFP imaging at 3T with active frequency stabilization. Magn Reson Med 2013; 70:776-84. [PMID: 23059965 DOI: 10.1002/mrm.24518] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2012] [Revised: 08/10/2012] [Accepted: 09/13/2012] [Indexed: 11/09/2022]
Abstract
UNLABELLED Cardiac MRI in neonates holds promise as a tool that can provide detailed functional information in this vulnerable group. However, their small size, rapid heart rate, and inability to breath-hold, pose particular challenges that require prolonged high-contrast and high-SNR methods. Balanced-steady state free precession (SSFP) offers high SNR efficiency and excellent contrast, but is vulnerable to off-resonance effects that cause banding artifacts. This is particularly problematic in the blood-pool, where off-resonance flow artifacts severely degrade image quality. METHODS In this article, we explore active frequency stabilization, combined with image-based shimming, to achieve prolonged SSFP imaging free of banding artifacts. The method was tested using 2D multislice SSFP cine acquisitions on 18 preterm infants, and the functional measures derived were validated against phase-contrast flow assessment. RESULTS Significant drifts in the resonant frequency (165 ± 23Hz) were observed during 10-min SSFP examinations. However, full short-axis stacks free of banding artifacts were achieved in 16 subjects with stabilization; the cardiac output obtained revealed a mean difference of 9.0 ± 8.5% compared to phase-contrast flow measurements. CONCLUSION Active frequency stabilization has enabled the use of prolonged SSFP acquisitions for neonatal cardiac imaging at 3T. The findings presented could have broader implications for other applications using prolong SSFP acquisitions.
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Affiliation(s)
- Anthony N Price
- Robert Steiner MRI Unit, Imaging Sciences Department, MRC Clinical Sciences Centre, Hammersmith Hospital, Imperial College London, London, UK; Division of Imaging Sciences and Biomedical Engineering, King's College London, King's Health Partners, St. Thomas' Hospital, London, UK
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Wilm BJ, Duerst Y, Dietrich BE, Wyss M, Vannesjo SJ, Schmid T, Brunner DO, Barmet C, Pruessmann KP. Feedback field control improves linewidths in in vivo magnetic resonance spectroscopy. Magn Reson Med 2013; 71:1657-62. [PMID: 23798466 DOI: 10.1002/mrm.24836] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2013] [Revised: 05/10/2013] [Accepted: 05/11/2013] [Indexed: 11/09/2022]
Abstract
PURPOSE Magnetic resonance spectroscopy (MRS) experiments rely on a homogeneous and stable magnetic field within the sample. Field homogeneity is typically optimized by static B0 shimming while reproducible effects from dynamic field variation are commonly diminished by means of gradient system calibration as well as calibration based on non-water suppressed reference data. However, residual encoding deficiencies from incomplete calibration and nonreproducible field perturbations deteriorate the quality of the obtained data. To overcome this problem, we propose to adapt higher-order feedback field control based on NMR field probes for its application in MRS. METHODS To allow for field measurements simultaneously with the spectroscopy readout, radiofrequency-shielded field probes were employed. The setup was evaluated in vitro and tested in vivo for single-voxel MRS at 7T to correct for field perturbations that occur due to subject breathing and limb motion. RESULTS The in vitro experiments showed an effective field control during the MRS sequence. The resulting spectroscopy data were free of spurious signal and the achieved field stabilization improved the spectral resolution in vitro and in vivo. CONCLUSION High-field MRS is limited by nonreproducible field perturbations for which spatiotemporal field feedback provides a solution without compromising sequence timing and efficiency.
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Affiliation(s)
- Bertram J Wilm
- Institute for Biomedical Engineering, University of Zurich and ETH Zurich, Switzerland
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