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Kern AL, Gutberlet M, Rumpel R, Bruesch I, Hohlfeld JM, Wacker F, Hensen B. Compartment-specific 129Xe HyperCEST z spectroscopy and chemical shift imaging of cucurbit[6]uril in spontaneously breathing rats. Z Med Phys 2023:S0939-3889(23)00094-6. [PMID: 37661475 DOI: 10.1016/j.zemedi.2023.08.005] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 07/28/2023] [Accepted: 08/13/2023] [Indexed: 09/05/2023]
Abstract
129Xe hyperpolarized gas chemical exchange saturation transfer (HyperCEST) MRI has been suggested as molecular imaging modality but translation to in vivo imaging has been slow, likely due to difficulties of synthesizing suitable molecules. Cucurbit[6]uril-either in readily available non-functionalized or potentially in functionalized form-may, combined with 129Xe HyperCEST MRI, prove useful as a switchable 129Xe MR contrast agent but the likely differential properties of contrast generation in individual chemical compartments as well as the influence of 129Xe signal drifts encountered in vivo on HyperCEST MRI are unknown. Here, HyperCEST z spectroscopy and chemical shift imaging with compartment-specific analysis are performed in a total of 10 rats using cucurbit[6]uril injected i.v. and under a protocol employing spontaneous respiration. Differences in intensity of the HyperCEST effect between chemical compartments and anatomical regions are investigated. Strategies to mitigate influence of signal instabilities associated with drifts in physiological parameters are developed. It is shown that presence of cucurbit[6]uril can be readily detected under spontaneous 129Xe inhalation mostly in aqueous tissues further away from the lung. Differences of effect intensity in individual regions and compartments must be considered in HyperCEST data interpretation. In particular, there seems to be almost no effect in lipids. 129Xe HyperCEST MR measurements utilizing spontaneous respiration protocols and extended measurement times are feasible. HyperCEST MRI of non-functionalized cucurbit[6]uril may create contrast between anatomical structures in vivo.
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Affiliation(s)
- Agilo Luitger Kern
- Institute for Diagnostic and Interventional Radiology, Hannover Medical School, Carl-Neuberg-Straße 1, 30625 Hannover, Germany; Biomedical Research in Endstage and Obstructive Lung Disease Hannover (BREATH), German Center for Lung Research (DZL), Carl-Neuberg-Straße 1, 30625 Hannover, Germany.
| | - Marcel Gutberlet
- Institute for Diagnostic and Interventional Radiology, Hannover Medical School, Carl-Neuberg-Straße 1, 30625 Hannover, Germany; Biomedical Research in Endstage and Obstructive Lung Disease Hannover (BREATH), German Center for Lung Research (DZL), Carl-Neuberg-Straße 1, 30625 Hannover, Germany.
| | - Regina Rumpel
- Institute for Laboratory Animal Science and Central Animal Facility, Hannover Medical School, Carl-Neuberg-Straße 1, 30625 Hannover, Germany.
| | - Inga Bruesch
- Institute for Laboratory Animal Science and Central Animal Facility, Hannover Medical School, Carl-Neuberg-Straße 1, 30625 Hannover, Germany.
| | - Jens M Hohlfeld
- Biomedical Research in Endstage and Obstructive Lung Disease Hannover (BREATH), German Center for Lung Research (DZL), Carl-Neuberg-Straße 1, 30625 Hannover, Germany; Clinical Airway Research, Fraunhofer Institute for Toxicology and Experimental Medicine (ITEM), Nikolai-Fuchs-Straße 1, 30625 Hannover, Germany; Department of Respiratory Medicine, Hannover Medical School, Carl-Neuberg-Straße 1, 30625 Hannover, Germany.
| | - Frank Wacker
- Institute for Diagnostic and Interventional Radiology, Hannover Medical School, Carl-Neuberg-Straße 1, 30625 Hannover, Germany; Biomedical Research in Endstage and Obstructive Lung Disease Hannover (BREATH), German Center for Lung Research (DZL), Carl-Neuberg-Straße 1, 30625 Hannover, Germany.
| | - Bennet Hensen
- Institute for Diagnostic and Interventional Radiology, Hannover Medical School, Carl-Neuberg-Straße 1, 30625 Hannover, Germany; Biomedical Research in Endstage and Obstructive Lung Disease Hannover (BREATH), German Center for Lung Research (DZL), Carl-Neuberg-Straße 1, 30625 Hannover, Germany.
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2
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Jost JO, Schröder L. Improving HyperCEST performance by favorable xenon exchange conditions in liposomal nanocarriers. NMR IN BIOMEDICINE 2023; 36:e4714. [PMID: 35181965 DOI: 10.1002/nbm.4714] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2021] [Revised: 02/03/2022] [Accepted: 02/16/2022] [Indexed: 05/23/2023]
Abstract
MRI reporters that combine signal enhancement from saturation transfer with hyperpolarized 129 Xe show nanomolar detection sensitivity for in vitro studies. However, they need further improvement for accelerated CEST build-up that sufficiently dominates the intrinsic loss of hyperpolarization under in vivo conditions. This study introduces liposomes with a HyperCEST-active lipopeptide to enhance the efficiency of a well known Xe host, CrA-ma, with medium Xe exchange kinetics in aqueous environment, by two orders of magnitude. The depolarization time for constant saturation power but increasing saturation time is used as a comparative measure to rank different nanocarrier formulations. A variable cage load illustrates that the available CEST sites should be well distributed throughout the nanocarriers to avoid inefficiency from back exchange. For a liposome loading with only 2 mol% CrA-lipopeptide, the higher exchange kinetics allowed us to work even with 17-fold lower saturation power than for CrA-ma itself to achieve significant image contrast with 129 Xe. Overall, this study illustrates the wide parameter space that is now available when incorporating CrA-labelled lipopeptides into liposomal carriers.
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Affiliation(s)
- Jan Oliver Jost
- Translational Molecular Imaging, Deutsches Krebsforschungszentrum (DKFZ), Heidelberg, Germany
- Molecular Imaging, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Berlin, Germany
| | - Leif Schröder
- Translational Molecular Imaging, Deutsches Krebsforschungszentrum (DKFZ), Heidelberg, Germany
- Molecular Imaging, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Berlin, Germany
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3
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Saul P, Schröder L, Schmidt AB, Hövener JB. Nanomaterials for hyperpolarized nuclear magnetic resonance and magnetic resonance imaging. WILEY INTERDISCIPLINARY REVIEWS. NANOMEDICINE AND NANOBIOTECHNOLOGY 2023:e1879. [PMID: 36781151 DOI: 10.1002/wnan.1879] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 01/03/2023] [Accepted: 01/07/2023] [Indexed: 02/15/2023]
Abstract
Nanomaterials play an important role in the development and application of hyperpolarized materials for magnetic resonance imaging (MRI). In this context they can not only act as hyperpolarized materials which are directly imaged but also play a role as carriers for hyperpolarized gases and catalysts for para-hydrogen induced polarization (PHIP) to generate hyperpolarized substrates for metabolic imaging. Those three application possibilities are discussed, focusing on carbon-based materials for the directly imaged particles. An overview over recent developments in all three fields is given, including the early developments in each field as well as important steps towards applications in MRI, such as making the initially developed methods more biocompatible and first imaging experiments with spatial resolution in either phantoms or in vivo studies. Focusing on the important features nanomaterials need to display to be applicable in the MRI context, a wide range of different approaches to that extent is covered, giving the reader a general idea of different possibilities as well as recent developments in those different fields of hyperpolarized magnetic resonance. This article is categorized under: Therapeutic Approaches and Drug Discovery > Emerging Technologies Diagnostic Tools > In Vivo Nanodiagnostics and Imaging.
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Affiliation(s)
- Philip Saul
- Section Biomedical Imaging, Molecular Imaging North Competence Center (MOIN CC), Department of Radiology and Neuroradiology, University Medical Center Schleswig-Holstein, Kiel University, Kiel, Germany
| | - Leif Schröder
- Division of Translational Molecular Imaging, Deutsches Krebsforschungszentrum (DKFZ), Heidelberg, Germany.,Molecular Imaging, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Berlin, Germany
| | - Andreas B Schmidt
- Intergrative Biosciences (Ibio), Department of Chemistry, Karmanos Cancer Institute (KCI), Wayne State University, Detroit, Michigan, USA.,German Cancer Consortium (DKTK), Partner Site Freiburg, German Cancer Research Center (DKFZ), Heidelberg, Germany.,Division of Medical Physics, Department of Radiology, Medical Center, University of Freiburg, Faculty of Medicine, University of Freiburg, Freiburg, Germany
| | - Jan-Bernd Hövener
- Section Biomedical Imaging, Molecular Imaging North Competence Center (MOIN CC), Department of Radiology and Neuroradiology, University Medical Center Schleswig-Holstein, Kiel University, Kiel, Germany
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4
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Zhao Z, Rudman NA, He J, Dmochowski IJ. Programming xenon diffusion in maltose-binding protein. Biophys J 2022; 121:4635-4643. [PMID: 36271622 PMCID: PMC9748359 DOI: 10.1016/j.bpj.2022.10.025] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Revised: 10/12/2022] [Accepted: 10/17/2022] [Indexed: 12/15/2022] Open
Abstract
Protein interiors contain void space that can bind small gas molecules. Determination of gas pathways and kinetics in proteins has been an intriguing and challenging task. Here, we combined computational methods and the hyperpolarized xenon-129 chemical exchange saturation transfer (hyper-CEST) NMR technique to investigate xenon (Xe) exchange kinetics in maltose-binding protein (MBP). A salt bridge ∼9 Å from the Xe-binding site formed upon maltose binding and slowed the Xe exchange rate, leading to a hyper-CEST 129Xe signal from maltose-bound MBP. Xe dissociation occurred faster than dissociation of the salt bridge, as shown by 13C NMR spectroscopy and variable-B1 hyper-CEST experiments. "Xe flooding" molecular dynamics simulations identified a surface hydrophobic site, V23, that has good Xe binding affinity. Mutations at this site confirmed its role as a secondary exchange pathway in modulating Xe diffusion. This shows the possibility for site-specifically controlling xenon protein-solvent exchange. Analysis of the available MBP structures suggests a biological role of MBP's large hydrophobic cavity to accommodate structural changes associated with ligand binding and protein-protein interactions.
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Affiliation(s)
- Zhuangyu Zhao
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania
| | - Nathan A Rudman
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania
| | - Jiayi He
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania
| | - Ivan J Dmochowski
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania.
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5
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Achekzai T, Ruppert K, Loza L, Amzajerdian F, Profka H, Duncan IF, Kadlecek SJ, Rizi RR. Investigating the impact of RF saturation-pulse parameters on compartment-selective gas-phase depolarization with xenon polarization transfer contrast MRI. Magn Reson Med 2022; 88:2447-2460. [PMID: 36046917 PMCID: PMC9529921 DOI: 10.1002/mrm.29405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 06/20/2022] [Accepted: 07/17/2022] [Indexed: 11/07/2022]
Abstract
PURPOSE To demonstrate the utility of continuous-wave (CW) saturation pulses in xenon-polarization transfer contrast (XTC) MRI and MRS, to investigate the selectivity of CW pulses applied to dissolved-phase resonances, and to develop a correction method for measurement biases from saturation of the nontargeted dissolved-phase compartment. METHODS Studies were performed in six healthy Sprague-Dawley rats over a series of end-exhale breath holds. Discrete saturation schemes included a series of 30 Gaussian pulses (8 ms FWHM), spaced 25 ms apart; CW saturation schemes included single block pulses, with variable flip angle and duration. In XTC imaging, saturation pulses were applied on both dissolved-phase resonance frequencies and off-resonance, to correct for other sources of signal loss and compromised selectivity. In spectroscopy experiments, saturation pulses were applied at a set of 19 frequencies spread out between 185 and 200 ppm to map out modified z-spectra. RESULTS Both modified z-spectra and imaging results showed that CW RF pulses offer sufficient depolarization and improved selectivity for generating contrast between presaturation and postsaturation acquisitions. A comparison of results obtained using a variety of saturation parameters confirms that saturation pulses applied at higher powers exhibit increased cross-contamination between dissolved-phase resonances. CONCLUSION Using CW RF saturation pulses in XTC contrast preparation, with the proposed correction method, offers a potentially more selective alternative to traditional discrete saturation. The suppression of the red blood cell contribution to the gas-phase depolarization opens the door to a novel way of quantifying exchange time between alveolar volume and hemoglobin.
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Affiliation(s)
- Tahmina Achekzai
- Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Kai Ruppert
- Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Luis Loza
- Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Faraz Amzajerdian
- Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA
- Department of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Harrilla Profka
- Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Ian F. Duncan
- Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Stephen J. Kadlecek
- Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Rahim R. Rizi
- Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA
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6
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Chighine K, Léonce E, Boutin C, Desvaux H, Berthault P. 129Xe ultra-fast Z spectroscopy enables micromolar detection of biosensors on a 1 T benchtop spectrometer. MAGNETIC RESONANCE (GOTTINGEN, GERMANY) 2021; 2:409-420. [PMID: 37904767 PMCID: PMC10539730 DOI: 10.5194/mr-2-409-2021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Accepted: 05/31/2021] [Indexed: 11/01/2023]
Abstract
The availability of a benchtop nuclear magnetic resonance (NMR) spectrometer, of low cost and easily transportable, can allow detection of low quantities of biosensors, provided that hyperpolarized species are used. Here we show that the micromolar threshold can easily be reached by employing laser-polarized xenon and cage molecules reversibly hosting it. Indirect detection of caged xenon is made via chemical exchange, using ultra-fast Z spectroscopy based on spatio-temporal encoding. On this non-dedicated low-field spectrometer, several ideas are proposed to improve the signal.
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Affiliation(s)
- Kévin Chighine
- Nanosciences et Innovation pour les Matériaux, la Biomédecine et l'Energie, CEA, CNRS, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
| | - Estelle Léonce
- Nanosciences et Innovation pour les Matériaux, la Biomédecine et l'Energie, CEA, CNRS, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
| | - Céline Boutin
- Nanosciences et Innovation pour les Matériaux, la Biomédecine et l'Energie, CEA, CNRS, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
| | - Hervé Desvaux
- Nanosciences et Innovation pour les Matériaux, la Biomédecine et l'Energie, CEA, CNRS, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
| | - Patrick Berthault
- Nanosciences et Innovation pour les Matériaux, la Biomédecine et l'Energie, CEA, CNRS, Université Paris-Saclay, 91191, Gif-sur-Yvette, France
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7
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Ullah MS, Zhivonitko VV, Samoylenko A, Zhyvolozhnyi A, Viitala S, Kankaanpää S, Komulainen S, Schröder L, Vainio SJ, Telkki VV. Identification of extracellular nanoparticle subsets by nuclear magnetic resonance. Chem Sci 2021; 12:8311-8319. [PMID: 34221312 PMCID: PMC8221169 DOI: 10.1039/d1sc01402a] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Accepted: 04/29/2021] [Indexed: 01/08/2023] Open
Abstract
Exosomes are a subset of secreted lipid envelope-encapsulated extracellular vesicles (EVs) of 50-150 nm diameter that can transfer cargo from donor to acceptor cells. In the current purification protocols of exosomes, many smaller and larger nanoparticles such as lipoproteins, exomers and microvesicles are typically co-isolated as well. Particle size distribution is one important characteristics of EV samples, as it reflects the cellular origin of EVs and the purity of the isolation. However, most of the physicochemical analytical methods today cannot illustrate the smallest exosomes and other small particles like the exomers. Here, we demonstrate that diffusion ordered spectroscopy (DOSY) nuclear magnetic resonance (NMR) method enables the determination of a very broad distribution of extracellular nanoparticles, ranging from 1 to 500 nm. The range covers sizes of all particles included in EV samples after isolation. The method is non-invasive, as it does not require any labelling or other chemical modification. We investigated EVs secreted from milk as well as embryonic kidney and renal carcinoma cells. Western blot analysis and immuno-electron microscopy confirmed expression of exosomal markers such as ALIX, TSG101, CD81, CD9, and CD63 in the EV samples. In addition to the larger particles observed by nanoparticle tracking analysis (NTA) in the range of 70-500 nm, the DOSY distributions include a significant number of smaller particles in the range of 10-70 nm, which are visible also in transmission electron microscopy images but invisible in NTA. Furthermore, we demonstrate that hyperpolarized chemical exchange saturation transfer (Hyper-CEST) with 129Xe NMR indicates also the existence of smaller and larger nanoparticles in the EV samples, providing also additional support for DOSY results. The method implies also that the Xe exchange is significantly faster in the EV pool than in the lipoprotein/exomer pool.
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Affiliation(s)
| | | | - Anatoliy Samoylenko
- Laboratory of Developmental Biology, Infotech Oulu, Oulu Center for Cell-Matrix Research, Kvantum Institute, Faculty of Biochemistry and Molecular Medicine Oulu Finland
| | - Artem Zhyvolozhnyi
- Laboratory of Developmental Biology, Infotech Oulu, Oulu Center for Cell-Matrix Research, Kvantum Institute, Faculty of Biochemistry and Molecular Medicine Oulu Finland
| | - Sirja Viitala
- Production Systems, Natural Resources Institute Finland (Luke) Jokioinen Finland
| | - Santeri Kankaanpää
- Production Systems, Natural Resources Institute Finland (Luke) Jokioinen Finland
| | | | - Leif Schröder
- Molecular Imaging, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) Berlin Germany
- Division of Translational Molecular Imaging, German Cancer Research Center (DKFZ) Heidelberg Germany
| | - Seppo J Vainio
- Laboratory of Developmental Biology, Infotech Oulu, Oulu Center for Cell-Matrix Research, Kvantum Institute, Faculty of Biochemistry and Molecular Medicine Oulu Finland
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Kunth M, Witte C, Schröder L. Mapping of Absolute Host Concentration and Exchange Kinetics of Xenon Hyper-CEST MRI Agents. Pharmaceuticals (Basel) 2021; 14:79. [PMID: 33494166 PMCID: PMC7909792 DOI: 10.3390/ph14020079] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Revised: 01/11/2021] [Accepted: 01/16/2021] [Indexed: 12/14/2022] Open
Abstract
Xenon magnetic resonance imaging (MRI) provides excellent sensitivity through the combination of spin hyperpolarization and chemical exchange saturation transfer (CEST). To this end, molecular hosts such as cryptophane-A or cucurbit[n]urils provide unique opportunities to design switchable MRI reporters. The concentration determination of such xenon binding sites in samples of unknown dilution remains, however, challenging. Contrary to 1H CEST agents, an internal reference of a certain host (in this case, cryptophane-A) at micromolar concentration is already sufficient to resolve the entire exchange kinetics information, including an unknown host concentration and the xenon spin exchange rate. Fast echo planar imaging (EPI)-based Hyper-CEST MRI in combination with Bloch-McConnell analysis thus allows quantitative insights to compare the performance of different emerging ultra-sensitive MRI reporters.
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Affiliation(s)
- Martin Kunth
- Molecular Imaging, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Campus Berlin-Buch, Robert-Roessle-Str. 10, 13125 Berlin, Germany;
| | - Christopher Witte
- Molecular Imaging, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Campus Berlin-Buch, Robert-Roessle-Str. 10, 13125 Berlin, Germany;
| | - Leif Schröder
- Molecular Imaging, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Campus Berlin-Buch, Robert-Roessle-Str. 10, 13125 Berlin, Germany;
- Translational Molecular Imaging, Deutsches Krebsforschungszentrum, Im Neuenheimer Feld 280, 69120 Heidelberg, Germany
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Kunth M, Schröder L. Binding site exchange kinetics revealed through efficient spin-spin dephasing of hyperpolarized 129Xe. Chem Sci 2020; 12:158-169. [PMID: 34163587 PMCID: PMC8178811 DOI: 10.1039/d0sc04835f] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023] Open
Abstract
Spin exchange between different chemical environments is an important observable for characterizing chemical exchange kinetics in various contexts, including protein folding, chelation chemistry, and host-guest interactions. Such spins experience effective spin-spin relaxation rate, R 2,eff, that typically shows a dispersive behavior which requires detailed analysis. Here, we describe a class of highly simplified R 2,eff behavior by relying on hyperpolarized 129Xe as a freely exchanging ligand reporter. It provides large chemical shift separations that yield reduced expressions of both the Swift-Connick and the Carver-Richards treatment of exchange-induced relaxation. Despite observing a diamagnetic system, R 2,eff is dominated by large Larmor frequency jumps and thus allows detection of otherwise inaccessible analyte concentrations with a single spin echo train (only 0.01% of the overall hyperpolarized spins need to be transiently bound to the molecule). The two Xe hosts cryptophane-A monoacid (CrA-ma) and cucurbit[6]uril (CB6) represent two exemplary families of container molecules (the latter one also serving as drug delivery vehicles) that act as highly efficient phase shifters for which we observed unprecedented exchange-induced relaxivity r 2 (up to 866 s-1 mM-1). By including methods of spatial encoding, multiple data points can be collected simultaneously to isolate the exchange contribution and determine the effective exchange rate in partially occupied binding sites with a single delivery of hyperpolarized nuclei. The relaxivity is directly related to the guest turnover in these systems and temperature-dependent measurements yield an activation energy of E A = 41 kJ mol-1 for Xe@CrA-ma from simple relaxometry analysis. The concept is transferable to many applications where Xe is known to exhibit large chemical shifts.
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Affiliation(s)
- Martin Kunth
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie im Forschungsverbund Berlin e.V. (FMP) Campus Berlin-Buch, Robert-Roessle-Str. 10 13125 Berlin Germany +49 30 94793 121
| | - Leif Schröder
- Leibniz-Forschungsinstitut für Molekulare Pharmakologie im Forschungsverbund Berlin e.V. (FMP) Campus Berlin-Buch, Robert-Roessle-Str. 10 13125 Berlin Germany +49 30 94793 121
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10
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Jayapaul J, Schröder L. Molecular Sensing with Host Systems for Hyperpolarized 129Xe. Molecules 2020; 25:E4627. [PMID: 33050669 PMCID: PMC7587211 DOI: 10.3390/molecules25204627] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Revised: 09/27/2020] [Accepted: 09/30/2020] [Indexed: 12/12/2022] Open
Abstract
Hyperpolarized noble gases have been used early on in applications for sensitivity enhanced NMR. 129Xe has been explored for various applications because it can be used beyond the gas-driven examination of void spaces. Its solubility in aqueous solutions and its affinity for hydrophobic binding pockets allows "functionalization" through combination with host structures that bind one or multiple gas atoms. Moreover, the transient nature of gas binding in such hosts allows the combination with another signal enhancement technique, namely chemical exchange saturation transfer (CEST). Different systems have been investigated for implementing various types of so-called Xe biosensors where the gas binds to a targeted host to address molecular markers or to sense biophysical parameters. This review summarizes developments in biosensor design and synthesis for achieving molecular sensing with NMR at unprecedented sensitivity. Aspects regarding Xe exchange kinetics and chemical engineering of various classes of hosts for an efficient build-up of the CEST effect will also be discussed as well as the cavity design of host molecules to identify a pool of bound Xe. The concept is presented in the broader context of reporter design with insights from other modalities that are helpful for advancing the field of Xe biosensors.
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Affiliation(s)
| | - Leif Schröder
- Molecular Imaging, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), 13125 Berlin, Germany;
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11
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Du K, Zemerov SD, Hurtado Parra S, Kikkawa JM, Dmochowski IJ. Paramagnetic Organocobalt Capsule Revealing Xenon Host-Guest Chemistry. Inorg Chem 2020; 59:13831-13844. [PMID: 32207611 PMCID: PMC7672707 DOI: 10.1021/acs.inorgchem.9b03634] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
We investigated Xe binding in a previously reported paramagnetic metal-organic tetrahedral capsule, [Co4L6]4-, where L2- = 4,4'-bis[(2-pyridinylmethylene)amino][1,1'-biphenyl]-2,2'-disulfonate. The Xe-inclusion complex, [XeCo4L6]4-, was confirmed by 1H NMR spectroscopy to be the dominant species in aqueous solution saturated with Xe gas. The measured Xe dissociation rate in [XeCo4L6]4-, koff = 4.45(5) × 102 s-1, was at least 40 times greater than that in the analogous [XeFe4L6]4- complex, highlighting the capability of metal-ligand interactions to tune the capsule size and guest permeability. The rapid exchange of 129Xe nuclei in [XeCo4L6]4- produced significant hyperpolarized 129Xe chemical exchange saturation transfer (hyper-CEST) NMR signal at 298 K, detected at a concentration of [XeCo4L6]4- as low as 100 pM, with presaturation at -89 ppm, which was referenced to solvated 129Xe in H2O. The saturation offset was highly temperature-dependent with a slope of -0.41(3) ppm/K, which is attributed to hyperfine interactions between the encapsulated 129Xe nucleus and electron spins on the four CoII centers. As such, [XeCo4L6]4- represents the first example of a paramagnetic hyper-CEST (paraHYPERCEST) sensor. Remarkably, the hyper-CEST 129Xe NMR resonance for [XeCo4L6]4- (δ = -89 ppm) was shifted 105 ppm upfield from the diamagnetic analogue [XeFe4L6]4- (δ = +16 ppm). The Xe inclusion complex was further characterized in the crystal structure of (C(NH2)3)4[Xe0.7Co4L6]·75 H2O (1). Hydrogen bonding between capsule-linker sulfonate groups and exogenous guanidinium cations, (C(NH2)3)+, stabilized capsule-capsule interactions in the solid state and also assisted in trapping a Xe atom (∼42 Å3) in the large (135 Å3) cavity of 1. Magnetic susceptibility measurements confirmed the presence of four noninteracting, magnetically anisotropic high-spin CoII centers in 1. Furthermore, [Co4L6]4- was found to be stable toward aggregation and oxidation, and the CEST performance of [XeCo4L6]4- was unaffected by biological macromolecules in H2O. These results recommend metal-organic capsules for fundamental investigations of Xe host-guest chemistry as well as applications with highly sensitive 129Xe-based sensors.
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12
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Jayapaul J, Schröder L. Probing Reversible Guest Binding with Hyperpolarized 129Xe-NMR: Characteristics and Applications for Cucurbit[ n]urils. Molecules 2020; 25:E957. [PMID: 32093412 PMCID: PMC7070628 DOI: 10.3390/molecules25040957] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Revised: 02/14/2020] [Accepted: 02/18/2020] [Indexed: 01/01/2023] Open
Abstract
Cucurbit[n]urils (CB[n]s) are a family of macrocyclic host molecules that find various applications in drug delivery, molecular switching, and dye displacement assays. The CB[n]s with n = 5-7 have also been studied with 129Xe-NMR. They bind the noble gas with a large range of exchange rates. Starting with insights from conventional direct detection of bound Xe, this review summarizes recent achievements with chemical exchange saturation transfer (CEST) detection of efficiently exchanging Xe in various CB[n]-based supramolecular systems. Unprecedented sensitivity has been reached by combining the CEST method with hyperpolarized Xe, the production of which is also briefly described. Applications such as displacement assays for enzyme activity detection and rotaxanes as emerging types of Xe biosensors are likewise discussed in the context of biomedical applications and pinpoint future directions for translating this field to preclinical studies.
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Affiliation(s)
| | - Leif Schröder
- Molecular Imaging, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), 13125 Berlin, Germany;
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13
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Korchak S, Riemer T, Kilian W, Mitschang L. Quantitative Assessment of Xenon Exchange Kinetics with Cucurbit[6]uril in Physiological Saline. Chemphyschem 2018; 19:1859-1865. [PMID: 29855138 DOI: 10.1002/cphc.201800048] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2018] [Indexed: 11/10/2022]
Abstract
Cucurbit[6]uril and xenon form supramolecular complexes that are of great potential for biosensing by NMR. This host-guest system acts alike a signaler in sensors facilitating the ultrasensitive detection of biomarkers by saturation transfer of chemically exchanging, hyperpolarized 129 Xe. Here, the exchange process is evaluated by NMR exchange spectroscopy utilizing the preparation of anti-parallel longitudinal magnetization with respect to free and host-bound xenon and the variation of xenon concentration. Evidence for dissociative as well as degenerate exchange mechanisms is revealed by a linear regression analysis of the determined exchange rates resulting in rate coefficients of 1131±11 s-1 (2390±70 s-1 ) and 108500±4900 M-1 s-1 (174200±13900 M-1 s-1 ), respectively, and an affinity constant of 289±8 M-1 (278±14 M-1 ) in physiological saline at 298 K (310 K). The results elucidate the supramolecular exchange and underpin the high efficacy for biosensing of this host-guest system. The approach is generally applicable to enhanced host-xenon exchange dynamics, yet slow on the NMR timescale, for quantitative kinetics and biosensing analyses.
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Affiliation(s)
- Sergey Korchak
- Physikalisch-Technische Bundesanstalt (PTB), Abbestr. 2-12, 10587, Berlin, Germany
- Present address: Max Planck Research Group NMR Signal Enhancement, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany
| | - Thomas Riemer
- Medical Department, Institute of Medical Physics and Biophysics, University of Leipzig, Härtelstr. 16-18, 04107, Leipzig, Germany
| | - Wolfgang Kilian
- Physikalisch-Technische Bundesanstalt (PTB), Abbestr. 2-12, 10587, Berlin, Germany
| | - Lorenz Mitschang
- Physikalisch-Technische Bundesanstalt (PTB), Abbestr. 2-12, 10587, Berlin, Germany
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14
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Hane FT, Fernando A, Prete BRJ, Peloquin B, Karas S, Chaudhuri S, Chahal S, Shepelytskyi Y, Wade A, Li T, DeBoef B, Albert MS. Cyclodextrin-Based Pseudorotaxanes: Easily Conjugatable Scaffolds for Synthesizing Hyperpolarized Xenon-129 Magnetic Resonance Imaging Agents. ACS OMEGA 2018; 3:677-681. [PMID: 31457922 PMCID: PMC6641221 DOI: 10.1021/acsomega.7b01744] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2017] [Accepted: 01/04/2018] [Indexed: 05/28/2023]
Abstract
Hyperpolarized (HP) xenon-129 (Xe) magnetic resonance (MR) imaging has the potential to detect biological analytes with high sensitivity and high resolution when coupled with xenon-encapsulating molecular probes. Despite the development of numerous HP Xe probes, one of the challenges that has hampered the translation of these agents from in vitro demonstration to in vivo testing is the difficulty in synthesizing the Xe-encapsulating cage molecule. In this study, we demonstrate that a pseudorotaxane, based on a γ-cyclodextrin macrocycle, is easily synthesized in one step and is detectable using HyperCEST-enhanced 129Xe MR spectroscopy.
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Affiliation(s)
- Francis T. Hane
- Department
of Chemistry, Lakehead University, 955 Oliver Road, Thunder Bay, Ontario P7B 5E1, Canada
- Thunder
Bay Regional Research Institute, 980 Oliver Road, Thunder Bay, Ontario P7B 5E1, Canada
| | - Ashvin Fernando
- Department
of Chemistry, University of Rhode Island, 140 Flagg Road, Kingston, Rhode Island 02881, United States
| | - Braedan R. J. Prete
- Department
of Chemistry, Lakehead University, 955 Oliver Road, Thunder Bay, Ontario P7B 5E1, Canada
| | - Brianna Peloquin
- Department
of Chemistry, University of Rhode Island, 140 Flagg Road, Kingston, Rhode Island 02881, United States
| | - Scott Karas
- Department
of Chemistry, University of Rhode Island, 140 Flagg Road, Kingston, Rhode Island 02881, United States
| | - Sauradip Chaudhuri
- Department
of Chemistry, University of Rhode Island, 140 Flagg Road, Kingston, Rhode Island 02881, United States
| | - Simrun Chahal
- Department
of Chemistry, Lakehead University, 955 Oliver Road, Thunder Bay, Ontario P7B 5E1, Canada
| | - Yurii Shepelytskyi
- Department
of Chemistry, Lakehead University, 955 Oliver Road, Thunder Bay, Ontario P7B 5E1, Canada
| | - Alanna Wade
- Department
of Chemistry, Lakehead University, 955 Oliver Road, Thunder Bay, Ontario P7B 5E1, Canada
| | - Tao Li
- Department
of Chemistry, Lakehead University, 955 Oliver Road, Thunder Bay, Ontario P7B 5E1, Canada
| | - Brenton DeBoef
- Department
of Chemistry, University of Rhode Island, 140 Flagg Road, Kingston, Rhode Island 02881, United States
| | - Mitchell S. Albert
- Department
of Chemistry, Lakehead University, 955 Oliver Road, Thunder Bay, Ontario P7B 5E1, Canada
- Thunder
Bay Regional Research Institute, 980 Oliver Road, Thunder Bay, Ontario P7B 5E1, Canada
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15
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Korchak S, Riemer T, Kilian W, Mitschang L. Quantitative biosensor detection by chemically exchanging hyperpolarized 129Xe. Phys Chem Chem Phys 2018; 20:1800-1808. [DOI: 10.1039/c7cp07051a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Quantitative modeling and evaluation of biosensor detection by hyperpolarized 129Xe chemical exchange saturation transfer (Hyper-CEST).
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Affiliation(s)
- S. Korchak
- Physikalisch-Technische Bundesanstalt (PTB)
- 10587 Berlin
- Germany
| | - T. Riemer
- University of Leipzig
- Medical Department
- Institute of Medical Physics and Biophysics
- 04107 Leipzig
- Germany
| | - W. Kilian
- Physikalisch-Technische Bundesanstalt (PTB)
- 10587 Berlin
- Germany
| | - L. Mitschang
- Physikalisch-Technische Bundesanstalt (PTB)
- 10587 Berlin
- Germany
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16
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Lakshmanan A, Lu GJ, Farhadi A, Nety SP, Kunth M, Lee-Gosselin A, Maresca D, Bourdeau RW, Yin M, Yan J, Witte C, Malounda D, Foster FS, Schröder L, Shapiro MG. Preparation of biogenic gas vesicle nanostructures for use as contrast agents for ultrasound and MRI. Nat Protoc 2017; 12:2050-2080. [PMID: 28880278 DOI: 10.1038/nprot.2017.081] [Citation(s) in RCA: 99] [Impact Index Per Article: 14.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Gas vesicles (GVs) are a unique class of gas-filled protein nanostructures that are detectable at subnanomolar concentrations and whose physical properties allow them to serve as highly sensitive imaging agents for ultrasound and MRI. Here we provide a protocol for isolating GVs from native and heterologous host organisms, functionalizing these nanostructures with moieties for targeting and fluorescence, characterizing their biophysical properties and imaging them using ultrasound and MRI. GVs can be isolated from natural cyanobacterial and haloarchaeal host organisms or from Escherichia coli expressing a heterologous GV gene cluster and purified using buoyancy-assisted techniques. They can then be modified by replacing surface-bound proteins with engineered, heterologously expressed variants or through chemical conjugation, resulting in altered mechanical, surface and targeting properties. Pressurized absorbance spectroscopy is used to characterize their mechanical properties, whereas dynamic light scattering (DLS)and transmission electron microscopy (TEM) are used to determine nanoparticle size and morphology, respectively. GVs can then be imaged with ultrasound in vitro and in vivo using pulse sequences optimized for their detection versus background. They can also be imaged with hyperpolarized xenon MRI using chemical exchange saturation transfer between GV-bound and dissolved xenon-a technique currently implemented in vitro. Taking 3-8 d to prepare, these genetically encodable nanostructures enable multimodal, noninvasive biological imaging with high sensitivity and potential for molecular targeting.
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Affiliation(s)
- Anupama Lakshmanan
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA
| | - George J Lu
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA
| | - Arash Farhadi
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA
| | - Suchita P Nety
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA
| | - Martin Kunth
- Molecular Imaging, Department of Structural Biology, Leibniz-Forschungsinstitute für Molekulare Pharmakologie, Berlin, Germany
| | - Audrey Lee-Gosselin
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA
| | - David Maresca
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA
| | - Raymond W Bourdeau
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA
| | - Melissa Yin
- Sunnybrook Research Institute, University of Toronto, Toronto, Ontario, Canada
| | - Judy Yan
- Sunnybrook Research Institute, University of Toronto, Toronto, Ontario, Canada
| | - Christopher Witte
- Molecular Imaging, Department of Structural Biology, Leibniz-Forschungsinstitute für Molekulare Pharmakologie, Berlin, Germany
| | - Dina Malounda
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA
| | - F Stuart Foster
- Sunnybrook Research Institute, University of Toronto, Toronto, Ontario, Canada.,Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada
| | - Leif Schröder
- Molecular Imaging, Department of Structural Biology, Leibniz-Forschungsinstitute für Molekulare Pharmakologie, Berlin, Germany
| | - Mikhail G Shapiro
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA
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17
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Barskiy DA, Coffey AM, Nikolaou P, Mikhaylov DM, Goodson BM, Branca RT, Lu GJ, Shapiro MG, Telkki VV, Zhivonitko VV, Koptyug IV, Salnikov OG, Kovtunov KV, Bukhtiyarov VI, Rosen MS, Barlow MJ, Safavi S, Hall IP, Schröder L, Chekmenev EY. NMR Hyperpolarization Techniques of Gases. Chemistry 2017; 23:725-751. [PMID: 27711999 PMCID: PMC5462469 DOI: 10.1002/chem.201603884] [Citation(s) in RCA: 110] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2016] [Indexed: 01/09/2023]
Abstract
Nuclear spin polarization can be significantly increased through the process of hyperpolarization, leading to an increase in the sensitivity of nuclear magnetic resonance (NMR) experiments by 4-8 orders of magnitude. Hyperpolarized gases, unlike liquids and solids, can often be readily separated and purified from the compounds used to mediate the hyperpolarization processes. These pure hyperpolarized gases enabled many novel MRI applications including the visualization of void spaces, imaging of lung function, and remote detection. Additionally, hyperpolarized gases can be dissolved in liquids and can be used as sensitive molecular probes and reporters. This Minireview covers the fundamentals of the preparation of hyperpolarized gases and focuses on selected applications of interest to biomedicine and materials science.
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Affiliation(s)
- Danila A Barskiy
- Department of Radiology, Department of Biomedical Engineering, Department of Physics, Vanderbilt-Ingram Cancer Center (VICC), Vanderbilt University Institute of Imaging Science (VUIIS), Vanderbilt University, Nashville, TN, 37232, USA
| | - Aaron M Coffey
- Department of Radiology, Department of Biomedical Engineering, Department of Physics, Vanderbilt-Ingram Cancer Center (VICC), Vanderbilt University Institute of Imaging Science (VUIIS), Vanderbilt University, Nashville, TN, 37232, USA
| | - Panayiotis Nikolaou
- Department of Radiology, Department of Biomedical Engineering, Department of Physics, Vanderbilt-Ingram Cancer Center (VICC), Vanderbilt University Institute of Imaging Science (VUIIS), Vanderbilt University, Nashville, TN, 37232, USA
| | | | - Boyd M Goodson
- Southern Illinois University, Department of Chemistry and Biochemistry, Materials Technology Center, Carbondale, IL, 62901, USA
| | - Rosa T Branca
- Department of Physics and Astronomy, Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, 27599, USA
| | - George J Lu
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, 91125, USA
| | - Mikhail G Shapiro
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, 91125, USA
| | | | - Vladimir V Zhivonitko
- International Tomography Center SB RAS, 630090, Novosibirsk, Russia
- Novosibirsk State University, Pirogova St. 2, 630090, Novosibirsk, Russia
| | - Igor V Koptyug
- International Tomography Center SB RAS, 630090, Novosibirsk, Russia
- Novosibirsk State University, Pirogova St. 2, 630090, Novosibirsk, Russia
| | - Oleg G Salnikov
- International Tomography Center SB RAS, 630090, Novosibirsk, Russia
- Novosibirsk State University, Pirogova St. 2, 630090, Novosibirsk, Russia
| | - Kirill V Kovtunov
- International Tomography Center SB RAS, 630090, Novosibirsk, Russia
- Novosibirsk State University, Pirogova St. 2, 630090, Novosibirsk, Russia
| | - Valerii I Bukhtiyarov
- Boreskov Institute of Catalysis SB RAS, 5 Acad. Lavrentiev Pr., 630090, Novosibirsk, Russia
| | - Matthew S Rosen
- MGH/A.A. Martinos Center for Biomedical Imaging, Boston, MA, 02129, USA
| | - Michael J Barlow
- Respiratory Medicine Department, Queen's Medical Centre, University of Nottingham Medical School, Nottingham, NG7 2UH, UK
| | - Shahideh Safavi
- Respiratory Medicine Department, Queen's Medical Centre, University of Nottingham Medical School, Nottingham, NG7 2UH, UK
| | - Ian P Hall
- Respiratory Medicine Department, Queen's Medical Centre, University of Nottingham Medical School, Nottingham, NG7 2UH, UK
| | - Leif Schröder
- Molecular Imaging, Department of Structural Biology, Leibniz-Institut für Molekulare Pharmakologie (FMP), 13125, Berlin, Germany
| | - Eduard Y Chekmenev
- Department of Radiology, Department of Biomedical Engineering, Department of Physics, Vanderbilt-Ingram Cancer Center (VICC), Vanderbilt University Institute of Imaging Science (VUIIS), Vanderbilt University, Nashville, TN, 37232, USA
- Russian Academy of Sciences, 119991, Moscow, Russia
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18
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Mari E, Berthault P. 129Xe NMR-based sensors: biological applications and recent methods. Analyst 2017; 142:3298-3308. [DOI: 10.1039/c7an01088e] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Molecular systems that target analytes of interest and host spin-hyperpolarized xenon lead to powerful 129Xe NMR-based sensors.
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Affiliation(s)
- E. Mari
- NIMBE
- CEA
- CNRS
- Université de Paris Saclay
- CEA Saclay
| | - P. Berthault
- NIMBE
- CEA
- CNRS
- Université de Paris Saclay
- CEA Saclay
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19
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Abstract
![]()
Molecular imaging holds considerable promise for elucidating biological
processes in normal physiology as well as disease states, by determining
the location and relative concentration of specific molecules of interest.
Proton-based magnetic resonance imaging (1H MRI) is nonionizing
and provides good spatial resolution for clinical imaging but lacks
sensitivity for imaging low-abundance (i.e., submicromolar) molecular
markers of disease or environments with low proton densities. To address
these limitations, hyperpolarized (hp) 129Xe NMR spectroscopy
and MRI have emerged as attractive complementary methodologies. Hyperpolarized
xenon is nontoxic and can be readily delivered to patients via inhalation
or injection, and improved xenon hyperpolarization technology makes
it feasible to image the lungs and brain for clinical applications. In order to target hp 129Xe to biomolecular targets
of interest, the concept of “xenon biosensing” was first
proposed by a Berkeley team in 2001. The development of xenon biosensors
has since focused on modifying organic host molecules (e.g., cryptophanes)
via diverse conjugation chemistries and has brought about numerous
sensing applications including the detection of peptides, proteins,
oligonucleotides, metal ions, chemical modifications, and enzyme activity.
Moreover, the large (∼300 ppm) chemical shift window for hp 129Xe bound to host molecules in water makes possible the simultaneous
identification of multiple species in solution, that is, multiplexing.
Beyond hyperpolarization, a 106-fold signal enhancement
can be achieved through a technique known as hyperpolarized 129Xe chemical exchange saturation transfer (hyper-CEST), which shows
great potential to meet the sensitivity requirement in many applications. This Account highlights an expanded palette of hyper-CEST biosensors,
which now includes cryptophane and cucurbit[6]uril (CB[6]) small-molecule
hosts, as well as genetically encoded gas vesicles and single proteins.
In 2015, we reported picomolar detection of commercially available
CB[6] via hyper-CEST. Inspired by the versatile host–guest
chemistry of CB[6], our lab and others developed “turn-on”
strategies for CB[6]-hyper-CEST biosensing, demonstrating detection
of protein analytes in complex media and specific chemical events.
CB[6] is starting to be employed for in vivo imaging
applications. We also recently determined that TEM-1 β-lactamase
can function as a single-protein reporter for hyper-CEST and observed
useful saturation contrast for β-lactamase expressed in bacterial
and mammalian cells. These newly developed small-molecule and genetically
encoded xenon biosensors offer significant potential to extend the
scope of hp 129Xe toward molecular MRI.
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Affiliation(s)
- Yanfei Wang
- Department of Chemistry, University of Pennsylvania, 231 South
34th Street, Philadelphia, Pennsylvania 19104, United States
| | - Ivan J. Dmochowski
- Department of Chemistry, University of Pennsylvania, 231 South
34th Street, Philadelphia, Pennsylvania 19104, United States
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20
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Jeong K, Netirojjanakul C, Munch HK, Sun J, Finbloom JA, Wemmer DE, Pines A, Francis MB. Targeted Molecular Imaging of Cancer Cells Using MS2-Based (129)Xe NMR. Bioconjug Chem 2016; 27:1796-801. [PMID: 27454679 DOI: 10.1021/acs.bioconjchem.6b00275] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
We have synthesized targeted, selective, and highly sensitive (129)Xe NMR nanoscale biosensors using a spherical MS2 viral capsid, Cryptophane A molecules, and DNA aptamers. The biosensors showed strong binding specificity toward targeted lymphoma cells (Ramos line). Hyperpolarized (129)Xe NMR signal contrast and hyper-CEST (129)Xe MRI image contrast indicated its promise as highly sensitive hyperpolarized (129)Xe NMR nanoscale biosensor for future applications in cancer detection in vivo.
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Affiliation(s)
- Keunhong Jeong
- Department of Chemistry, University of California , Berkeley, California 94720-1460, United States.,Materials Sciences Division and §Physical Biosciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720-1460, United States
| | - Chawita Netirojjanakul
- Department of Chemistry, University of California , Berkeley, California 94720-1460, United States.,Materials Sciences Division and §Physical Biosciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720-1460, United States
| | - Henrik K Munch
- Department of Chemistry, University of California , Berkeley, California 94720-1460, United States.,Materials Sciences Division and §Physical Biosciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720-1460, United States
| | - Jinny Sun
- Department of Chemistry, University of California , Berkeley, California 94720-1460, United States.,Materials Sciences Division and §Physical Biosciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720-1460, United States
| | - Joel A Finbloom
- Department of Chemistry, University of California , Berkeley, California 94720-1460, United States.,Materials Sciences Division and §Physical Biosciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720-1460, United States
| | - David E Wemmer
- Department of Chemistry, University of California , Berkeley, California 94720-1460, United States.,Materials Sciences Division and §Physical Biosciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720-1460, United States
| | - Alexander Pines
- Department of Chemistry, University of California , Berkeley, California 94720-1460, United States.,Materials Sciences Division and §Physical Biosciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720-1460, United States
| | - Matthew B Francis
- Department of Chemistry, University of California , Berkeley, California 94720-1460, United States.,Materials Sciences Division and §Physical Biosciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720-1460, United States
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21
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Gomes MD, Dao P, Jeong K, Slack CC, Vassiliou CC, Finbloom JA, Francis MB, Wemmer DE, Pines A. 129Xe NMR Relaxation-Based Macromolecular Sensing. J Am Chem Soc 2016; 138:9747-50. [DOI: 10.1021/jacs.6b02758] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Muller D. Gomes
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Phuong Dao
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Keunhong Jeong
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Clancy C. Slack
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | | | - Joel A. Finbloom
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Matthew B. Francis
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - David E. Wemmer
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Physical
Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Alexander Pines
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
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22
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Hane FT, Smylie PS, Li T, Ruberto J, Dowhos K, Ball I, Tomanek B, DeBoef B, Albert MS. HyperCEST detection of cucurbit[6]uril in whole blood using an ultrashort saturation Pre-pulse train. CONTRAST MEDIA & MOLECULAR IMAGING 2016; 11:285-90. [DOI: 10.1002/cmmi.1690] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2015] [Revised: 02/02/2016] [Accepted: 02/14/2016] [Indexed: 01/23/2023]
Affiliation(s)
- Francis T. Hane
- Lakehead University; Department of Chemistry; 955 Oliver Rd Thunder Bay ON P7B 5E1 Canada
- Thunder Bay Regional Research Institute; 980 Oliver Rd Thunder Bay ON P7B 5E1 Canada
| | - Peter S. Smylie
- Lakehead University; Department of Chemistry; 955 Oliver Rd Thunder Bay ON P7B 5E1 Canada
| | - Tao Li
- Thunder Bay Regional Research Institute; 980 Oliver Rd Thunder Bay ON P7B 5E1 Canada
| | - Julia Ruberto
- Lakehead University; Department of Chemistry; 955 Oliver Rd Thunder Bay ON P7B 5E1 Canada
| | - Krista Dowhos
- Lakehead University; Department of Chemistry; 955 Oliver Rd Thunder Bay ON P7B 5E1 Canada
| | - Iain Ball
- Thunder Bay Regional Research Institute; 980 Oliver Rd Thunder Bay ON P7B 5E1 Canada
- Philips Healthcare; 65 Epping Road North Ryde NSW 2113 Australia
| | - Boguslaw Tomanek
- Thunder Bay Regional Research Institute; 980 Oliver Rd Thunder Bay ON P7B 5E1 Canada
- University of Alberta; Department of Oncology; 11560 University Avenue Edmonton Alberta T6G 1Z2 Canada
| | - Brenton DeBoef
- University of Rhode Island; Department of Chemistry; 51 Lower College Rd Kingston RI 02881 USA
| | - Mitchell S. Albert
- Lakehead University; Department of Chemistry; 955 Oliver Rd Thunder Bay ON P7B 5E1 Canada
- Thunder Bay Regional Research Institute; 980 Oliver Rd Thunder Bay ON P7B 5E1 Canada
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23
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Korchak S, Kilian W, Schröder L, Mitschang L. Design and comparison of exchange spectroscopy approaches to cryptophane-xenon host-guest kinetics. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2016; 265:139-145. [PMID: 26896869 DOI: 10.1016/j.jmr.2016.02.005] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2015] [Revised: 02/04/2016] [Accepted: 02/07/2016] [Indexed: 06/05/2023]
Abstract
Exchange spectroscopy is used in combination with a variation of xenon concentration to disentangle the kinetics of the reversible binding of xenon to cryptophane-A. The signal intensity of either free or crytophane-bound xenon decays in a manner characteristic of the underlying exchange reactions when the spins in the other pool are perturbed. Three experimental approaches, including the well-known Hyper-CEST method, are shown to effectively entail a simple linear dependence of the signal depletion rate, or of a related quantity, on free xenon concentration. This occurs when using spin pool saturation or inversion followed by free exchange. The identification and quantification of contributions to the binding kinetics is then straightforward: in the depletion rate plot, the intercept at the vanishing free xenon concentration represents the kinetic rate coefficient for xenon detachment from the host by dissociative processes while the slope is indicative of the kinetic rate coefficient for degenerate exchange reactions. Comparing quantified kinetic rates for hyperpolarized xenon in aqueous solution reveals the high accuracy of each approach but also shows differences in the precision of the numerical results and in the requirements for prior knowledge. Because of their broad range of applicability the proposed exchange spectroscopy experiments can be readily used to unravel the kinetics of complex formation of xenon with host molecules in the various situations appearing in practice.
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Affiliation(s)
- Sergey Korchak
- Physikalisch-Technische Bundesanstalt Braunschweig und Berlin, Division of Medical Physics and Metrological Information Technology, Abbestr. 2 - 12, 10587 Berlin, Germany
| | - Wolfgang Kilian
- Physikalisch-Technische Bundesanstalt Braunschweig und Berlin, Division of Medical Physics and Metrological Information Technology, Abbestr. 2 - 12, 10587 Berlin, Germany
| | - Leif Schröder
- Leibniz-Institut für Molekulare Pharmakologie (FMP), Robert-Rössle-Str. 10, 13125 Berlin, Germany
| | - Lorenz Mitschang
- Physikalisch-Technische Bundesanstalt Braunschweig und Berlin, Division of Medical Physics and Metrological Information Technology, Abbestr. 2 - 12, 10587 Berlin, Germany.
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Kunth M, Witte C, Hennig A, Schröder L. Identification, classification, and signal amplification capabilities of high-turnover gas binding hosts in ultra-sensitive NMR. Chem Sci 2015; 6:6069-6075. [PMID: 30090222 PMCID: PMC6055117 DOI: 10.1039/c5sc01400j] [Citation(s) in RCA: 68] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2015] [Accepted: 07/05/2015] [Indexed: 12/20/2022] Open
Abstract
Nuclear Magnetic Resonance (NMR) can be a powerful tool for investigating exchange kinetics of host-guest interactions in solution. Beyond conventional direct NMR detection, radiofrequency (RF) saturation transfer can be used to enhance the study of such chemical exchange or to enable signal amplification from a dilute host. However, systems that are both dilute and labile (fast dissociation/re-association) impose specific challenges to direct as well as saturation transfer detection. Here we investigate host-guest systems under previously inaccessible conditions using saturation transfer techniques in combination with hyperpolarized nuclei and quantitative evaluation under different RF exposure. We further use that information to illustrate the consequences for signal amplification capabilities and correct interpretation of observed signal contrast from comparative exchange data of different types of hosts. In particular, we compare binding of xenon (Xe) to cucurbit[6]uril (CB6) with binding to cryptophane-A monoacid (CrA) in water as two different model systems. The Xe complexation with CB6 is extremely difficult to access by conventional NMR due to its low water solubility. We successfully quantified the exchange kinetics of this system and found that the absence of Xe signals related to encapsulated Xe in conventional hyperpolarized 129Xe NMR is due to line broadening and not due to low binding. By introducing a measure for the gas turnover during constant association-dissociation, we demonstrate that the signal amplification from a dilute pool of CB6 can turn this host into a very powerful contrast agent for Xe MRI applications (100-fold more efficient than cryptophane). However, labile systems only provide improved signal amplification for suitable saturation conditions and otherwise become disadvantageous. The method is applicable to many hosts where Xe is a suitable spy nucleus to probe for non-covalent interactions and should foster reinvestigation of several systems to delineate true absence of interaction from labile complex formation.
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Affiliation(s)
- Martin Kunth
- ERC Project BiosensorImaging , Leibniz-Institut für Molekulare Pharmakologie (FMP) , 13125 Berlin , Germany . ; Tel: +49 30 947 93 121
| | - Christopher Witte
- ERC Project BiosensorImaging , Leibniz-Institut für Molekulare Pharmakologie (FMP) , 13125 Berlin , Germany . ; Tel: +49 30 947 93 121
| | - Andreas Hennig
- Jacobs University Bremen , Department of Life Sciences and Chemistry , Campus Ring 1 , 28759 Bremen , Germany
| | - Leif Schröder
- ERC Project BiosensorImaging , Leibniz-Institut für Molekulare Pharmakologie (FMP) , 13125 Berlin , Germany . ; Tel: +49 30 947 93 121
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