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For: Carra JH, Anderson EA, Privalov PL. Thermodynamics of staphylococcal nuclease denaturation. I. The acid-denatured state. Protein Sci 1994;3:944-51. [PMID: 8069223 PMCID: PMC2142874 DOI: 10.1002/pro.5560030609] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Number Cited by Other Article(s)
1
Galano-Frutos JJ, Nerín-Fonz F, Sancho J. Calculation of Protein Folding Thermodynamics Using Molecular Dynamics Simulations. J Chem Inf Model 2023;63:7791-7806. [PMID: 37955428 PMCID: PMC10751793 DOI: 10.1021/acs.jcim.3c01107] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 10/18/2023] [Accepted: 10/18/2023] [Indexed: 11/14/2023]
2
Patel AY, Jonnalagadda KS, Paradis N, Vaden TD, Wu C, Caputo GA. Effects of Ionic Liquids on Metalloproteins. Molecules 2021;26:514. [PMID: 33478102 PMCID: PMC7835893 DOI: 10.3390/molecules26020514] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 01/04/2021] [Accepted: 01/08/2021] [Indexed: 01/28/2023]  Open
3
Galano-Frutos JJ, Sancho J. Accurate Calculation of Barnase and SNase Folding Energetics Using Short Molecular Dynamics Simulations and an Atomistic Model of the Unfolded Ensemble: Evaluation of Force Fields and Water Models. J Chem Inf Model 2019;59:4350-4360. [PMID: 31513394 DOI: 10.1021/acs.jcim.9b00430] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
4
Sankaranarayanan K, Dhathathreyan A, Krägel J, Miller R. Interfacial viscoelasticity of myoglobin at air/water and air/solution interfaces: role of folding and clustering. J Phys Chem B 2012;116:895-902. [PMID: 22176527 DOI: 10.1021/jp2100733] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
5
Norberto DR, Vieira JM, de Souza AR, Bispo JAC, Bonafe CFS. Pressure- and Urea-Induced Denaturation of Bovine Serum Albumin: Considerations about Protein Heterogeneity. ACTA ACUST UNITED AC 2012. [DOI: 10.4236/ojbiphy.2012.21002] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
6
Simpson RJ. Stabilization of proteins for storage. Cold Spring Harb Protoc 2010;2010:pdb.top79. [PMID: 20439424 DOI: 10.1101/pdb.top79] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
7
Talla-Singh D, Stites WE. Refinement of noncalorimetric determination of the change in heat capacity, DeltaC(p), of protein unfolding and validation across a wide temperature range. Proteins 2008;71:1607-16. [PMID: 18384147 DOI: 10.1002/prot.22016] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
8
Byrne MP, Stites WE. Thermal denaturations of staphylococcal nuclease wild-type and mutants monitored by fluorescence and circular dichroism are similar: lack of evidence for other than a two state thermal denaturation. Biophys Chem 2007;125:490-6. [PMID: 17134819 PMCID: PMC1941688 DOI: 10.1016/j.bpc.2006.10.014] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2006] [Revised: 10/28/2006] [Accepted: 10/29/2006] [Indexed: 11/18/2022]
9
Rashid F, Sharma S, Baig MA, Bano B. Molten globule state of human placental cystatin (HPC) at low pH conditions and the effects of trifluoroethanol (TFE) and methanol. Biochem Cell Biol 2006;84:126-34. [PMID: 16609692 DOI: 10.1139/o05-171] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
10
Fitch CA, Whitten ST, Hilser VJ, García-Moreno E B. Molecular mechanisms of pH-driven conformational transitions of proteins: Insights from continuum electrostatics calculations of acid unfolding. Proteins 2006;63:113-26. [PMID: 16400648 DOI: 10.1002/prot.20797] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
11
Haq SK, Rasheedi S, Sharma P, Ahmad B, Khan RH. Influence of salts and alcohols on the conformation of partially folded intermediate of stem bromelain at low pH. Int J Biochem Cell Biol 2005;37:361-74. [PMID: 15474981 DOI: 10.1016/j.biocel.2004.07.005] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2004] [Revised: 06/23/2004] [Accepted: 07/09/2004] [Indexed: 11/26/2022]
12
Harries D, Parsegian VA. Gibbs adsorption isotherm combined with Monte Carlo sampling to see action of cosolutes on protein folding. Proteins 2004;57:311-21. [PMID: 15340918 DOI: 10.1002/prot.20182] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
13
Guzman-Casado M, Parody-Morreale A, Robic S, Marqusee S, Sanchez-Ruiz JM. Energetic evidence for formation of a pH-dependent hydrophobic cluster in the denatured state of Thermus thermophilus ribonuclease H. J Mol Biol 2003;329:731-43. [PMID: 12787674 DOI: 10.1016/s0022-2836(03)00513-8] [Citation(s) in RCA: 70] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
14
Gupta P, Khan RH, Saleemuddin M. Trifluoroethanol-induced "molten globule" state in stem bromelain. Arch Biochem Biophys 2003;413:199-206. [PMID: 12729617 DOI: 10.1016/s0003-9861(03)00126-7] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
15
Whitten ST, Wooll JO, Razeghifard R, García-Moreno E B, Hilser VJ. The origin of pH-dependent changes in m-values for the denaturant-induced unfolding of proteins. J Mol Biol 2001;309:1165-75. [PMID: 11399086 DOI: 10.1006/jmbi.2001.4726] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
16
Whitten ST, García-Moreno E B. pH dependence of stability of staphylococcal nuclease: evidence of substantial electrostatic interactions in the denatured state. Biochemistry 2000;39:14292-304. [PMID: 11087378 DOI: 10.1021/bi001015c] [Citation(s) in RCA: 115] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
17
Filfil R, Chalikian TV. Volumetric and spectroscopic characterizations of the native and acid-induced denatured states of staphylococcal nuclease. J Mol Biol 2000;299:827-42. [PMID: 10835287 DOI: 10.1006/jmbi.2000.3773] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
18
Lassalle MW, Yamada H, Akasaka K. The pressure-temperature free energy-landscape of staphylococcal nuclease monitored by (1)H NMR. J Mol Biol 2000;298:293-302. [PMID: 10764598 DOI: 10.1006/jmbi.2000.3659] [Citation(s) in RCA: 82] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
19
Muzammil S, Kumar Y, Tayyab S. Molten globule-like state of human serum albumin at low pH. EUROPEAN JOURNAL OF BIOCHEMISTRY 1999;266:26-32. [PMID: 10542047 DOI: 10.1046/j.1432-1327.1999.00810.x] [Citation(s) in RCA: 109] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
20
Kaushik JK, Bhat R. Thermal Stability of Proteins in Aqueous Polyol Solutions:  Role of the Surface Tension of Water in the Stabilizing Effect of Polyols. J Phys Chem B 1998. [DOI: 10.1021/jp981119l] [Citation(s) in RCA: 183] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
21
Robertson AD, Murphy KP. Protein Structure and the Energetics of Protein Stability. Chem Rev 1997;97:1251-1268. [PMID: 11851450 DOI: 10.1021/cr960383c] [Citation(s) in RCA: 506] [Impact Index Per Article: 18.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
22
Eftink MR, Ramsay GD, Beavers A. Studies of the unfolding of an unstable mutant of staphylococcal nuclease: Evidence for low temperature unfolding and compactness of the high temperature unfolded state. Proteins 1997. [DOI: 10.1002/(sici)1097-0134(199706)28:2<227::aid-prot11>3.0.co;2-k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
23
Hilser VJ, Townsend BD, Freire E. Structure-based statistical thermodynamic analysis of T4 lysozyme mutants: structural mapping of cooperative interactions. Biophys Chem 1997;64:69-79. [PMID: 9127939 DOI: 10.1016/s0301-4622(96)02220-x] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
24
Eftink MR, Ionescu R. Thermodynamics of protein unfolding: questions pertinent to testing the validity of the two-state model. Biophys Chem 1997;64:175-97. [PMID: 17029834 DOI: 10.1016/s0301-4622(96)02237-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/1996] [Accepted: 09/11/1996] [Indexed: 10/17/2022]
25
Makhatadze GI, Lopez MM, Privalov PL. Heat capacities of protein functional groups. Biophys Chem 1997;64:93-101. [PMID: 17029831 DOI: 10.1016/s0301-4622(96)02234-x] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/1996] [Accepted: 09/13/1996] [Indexed: 10/18/2022]
26
Carra JH, Murphy EC, Privalov PL. Thermodynamic effects of mutations on the denaturation of T4 lysozyme. Biophys J 1996;71:1994-2001. [PMID: 8889173 PMCID: PMC1233665 DOI: 10.1016/s0006-3495(96)79397-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
27
Gursky O, Atkinson D. High- and low-temperature unfolding of human high-density apolipoprotein A-2. Protein Sci 1996;5:1874-82. [PMID: 8880911 PMCID: PMC2143548 DOI: 10.1002/pro.5560050913] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
28
Poklar N, Vesnaver G, Lapanje S. Thermodynamics of denaturation of alpha-chymotrypsinogen A in aqueous urea and alkylurea solutions. JOURNAL OF PROTEIN CHEMISTRY 1995;14:709-19. [PMID: 8747432 DOI: 10.1007/bf01886910] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
29
Myers JK, Pace CN, Scholtz JM. Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding. Protein Sci 1995;4:2138-48. [PMID: 8535251 PMCID: PMC2142997 DOI: 10.1002/pro.5560041020] [Citation(s) in RCA: 1444] [Impact Index Per Article: 49.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
30
Dill KA, Bromberg S, Yue K, Fiebig KM, Yee DP, Thomas PD, Chan HS. Principles of protein folding--a perspective from simple exact models. Protein Sci 1995;4:561-602. [PMID: 7613459 PMCID: PMC2143098 DOI: 10.1002/pro.5560040401] [Citation(s) in RCA: 1174] [Impact Index Per Article: 40.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
31
Eftink MR. Use of multiple spectroscopic methods to monitor equilibrium unfolding of proteins. Methods Enzymol 1995;259:487-512. [PMID: 8538469 DOI: 10.1016/0076-6879(95)59058-7] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
32
Makhatadze GI, Privalov PL. Energetics of protein structure. ADVANCES IN PROTEIN CHEMISTRY 1995;47:307-425. [PMID: 8561051 DOI: 10.1016/s0065-3233(08)60548-3] [Citation(s) in RCA: 775] [Impact Index Per Article: 26.7] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
33
Xie D, Fox R, Freire E. Thermodynamic characterization of an equilibrium folding intermediate of staphylococcal nuclease. Protein Sci 1994;3:2175-84. [PMID: 7756977 PMCID: PMC2142756 DOI: 10.1002/pro.5560031203] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
34
Carra JH, Anderson EA, Privalov PL. Thermodynamics of staphylococcal nuclease denaturation. II. The A-state. Protein Sci 1994;3:952-9. [PMID: 8069224 PMCID: PMC2142886 DOI: 10.1002/pro.5560030610] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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