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Newton AC, Creissen HE, Erreguerena IA, Havis ND. Disease Management in Regenerative Cropping in the Context of Climate Change and Regulatory Restrictions. ANNUAL REVIEW OF PHYTOPATHOLOGY 2024; 62:337-356. [PMID: 38950449 DOI: 10.1146/annurev-phyto-121423-042037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/03/2024]
Abstract
Regenerative agriculture as a term and concept has gained much traction over recent years. Many farmers are convinced that by adopting these principles they will be able to address the triple crisis of biodiversity loss, climate change, and food security. However, the impact of regenerative agriculture practices on crop pathogens and their management has received little attention from the scientific community. Significant changes to cropping systems may result in certain diseases presenting more or less of a threat. Shifts in major diseases may have significant implications regarding optimal integrated pest management (IPM) strategies that aim to improve profitability and productivity in an environmentally sensitive manner. In particular, many aspects of regenerative agriculture change risk levels and risk management in ways that are central to effective IPM. This review outlines some of the challenges, gaps, and opportunities in our understanding of appropriate approaches for managing crop diseases in regenerative cropping systems.
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Affiliation(s)
- A C Newton
- Ecological Sciences, James Hutton Institute, Invergowrie, Dundee, United Kingdom;
| | - H E Creissen
- Scotland's Rural College (SRUC), Edinburgh, United Kingdom
| | - I A Erreguerena
- National Institute of Agricultural Technology (INTA Manfredi), Manfredi, Córdoba, Argentina
| | - N D Havis
- Scotland's Rural College (SRUC), Edinburgh, United Kingdom
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Feng G, Gu Y, Wang C, Zhou Y, Huang S, Luo B. Wheat Fusarium Head Blight Automatic Non-Destructive Detection Based on Multi-Scale Imaging: A Technical Perspective. PLANTS (BASEL, SWITZERLAND) 2024; 13:1722. [PMID: 38999562 PMCID: PMC11243561 DOI: 10.3390/plants13131722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2024] [Revised: 06/17/2024] [Accepted: 06/19/2024] [Indexed: 07/14/2024]
Abstract
Fusarium head blight (FHB) is a major threat to global wheat production. Recent reviews of wheat FHB focused on pathology or comprehensive prevention and lacked a summary of advanced detection techniques. Unlike traditional detection and management methods, wheat FHB detection based on various imaging technologies has the obvious advantages of a high degree of automation and efficiency. With the rapid development of computer vision and deep learning technology, the number of related research has grown explosively in recent years. This review begins with an overview of wheat FHB epidemic mechanisms and changes in the characteristics of infected wheat. On this basis, the imaging scales are divided into microscopic, medium, submacroscopic, and macroscopic scales. Then, we outline the recent relevant articles, algorithms, and methodologies about wheat FHB from disease detection to qualitative analysis and summarize the potential difficulties in the practicalization of the corresponding technology. This paper could provide researchers with more targeted technical support and breakthrough directions. Additionally, this paper provides an overview of the ideal application mode of the FHB detection technologies based on multi-scale imaging and then examines the development trend of the all-scale detection system, which paved the way for the fusion of non-destructive detection technologies of wheat FHB based on multi-scale imaging.
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Affiliation(s)
- Guoqing Feng
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100089, China; (G.F.); (Y.G.); (C.W.); (Y.Z.); (S.H.)
- National Engineering Research Center for Information Technology in Agriculture, Beijing 100097, China
- College of Agricultural Engineering, Jiangsu University, Zhenjiang 212000, China
| | - Ying Gu
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100089, China; (G.F.); (Y.G.); (C.W.); (Y.Z.); (S.H.)
- National Engineering Research Center for Information Technology in Agriculture, Beijing 100097, China
| | - Cheng Wang
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100089, China; (G.F.); (Y.G.); (C.W.); (Y.Z.); (S.H.)
- National Engineering Research Center for Information Technology in Agriculture, Beijing 100097, China
- College of Agricultural Engineering, Jiangsu University, Zhenjiang 212000, China
| | - Yanan Zhou
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100089, China; (G.F.); (Y.G.); (C.W.); (Y.Z.); (S.H.)
- National Engineering Research Center for Information Technology in Agriculture, Beijing 100097, China
| | - Shuo Huang
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100089, China; (G.F.); (Y.G.); (C.W.); (Y.Z.); (S.H.)
- National Engineering Research Center for Information Technology in Agriculture, Beijing 100097, China
| | - Bin Luo
- Research Center of Intelligent Equipment, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100089, China; (G.F.); (Y.G.); (C.W.); (Y.Z.); (S.H.)
- National Engineering Research Center for Information Technology in Agriculture, Beijing 100097, China
- College of Agricultural Engineering, Jiangsu University, Zhenjiang 212000, China
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Jyoti SD, Singh G, Pradhan AK, Tarpley L, Septiningsih EM, Talukder SK. Rice breeding for low input agriculture. FRONTIERS IN PLANT SCIENCE 2024; 15:1408356. [PMID: 38974981 PMCID: PMC11224470 DOI: 10.3389/fpls.2024.1408356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Accepted: 05/24/2024] [Indexed: 07/09/2024]
Abstract
A low-input-based farming system can reduce the adverse effects of modern agriculture through proper utilization of natural resources. Modern varieties often need to improve in low-input settings since they are not adapted to these systems. In addition, rice is one of the most widely cultivated crops worldwide. Enhancing rice performance under a low input system will significantly reduce the environmental concerns related to rice cultivation. Traits that help rice to maintain yield performance under minimum inputs like seedling vigor, appropriate root architecture for nutrient use efficiency should be incorporated into varieties for low input systems through integrated breeding approaches. Genes or QTLs controlling nutrient uptake, nutrient assimilation, nutrient remobilization, and root morphology need to be properly incorporated into the rice breeding pipeline. Also, genes/QTLs controlling suitable rice cultivars for sustainable farming. Since several variables influence performance under low input conditions, conventional breeding techniques make it challenging to work on many traits. However, recent advances in omics technologies have created enormous opportunities for rapidly improving multiple characteristics. This review highlights current research on features pertinent to low-input agriculture and provides an overview of alternative genomics-based breeding strategies for enhancing genetic gain in rice suitable for low-input farming practices.
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Affiliation(s)
- Subroto Das Jyoti
- Department of Soil and Crop Sciences, Texas A&M University, College Station, TX, United States
| | - Gurjeet Singh
- Texas A&M AgriLife Research Center, Beaumont, TX, United States
| | | | - Lee Tarpley
- Department of Soil and Crop Sciences, Texas A&M University, College Station, TX, United States
- Texas A&M AgriLife Research Center, Beaumont, TX, United States
| | - Endang M. Septiningsih
- Department of Soil and Crop Sciences, Texas A&M University, College Station, TX, United States
| | - Shyamal K. Talukder
- Department of Soil and Crop Sciences, Texas A&M University, College Station, TX, United States
- Texas A&M AgriLife Research Center, Beaumont, TX, United States
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Wang J, Jia J, Zhang Y, Wang H, Zhu S. RAAWC-UNet: an apple leaf and disease segmentation method based on residual attention and atrous spatial pyramid pooling improved UNet with weight compression loss. FRONTIERS IN PLANT SCIENCE 2024; 15:1305358. [PMID: 38529067 PMCID: PMC10961398 DOI: 10.3389/fpls.2024.1305358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2023] [Accepted: 02/15/2024] [Indexed: 03/27/2024]
Abstract
Introduction Early detection of leaf diseases is necessary to control the spread of plant diseases, and one of the important steps is the segmentation of leaf and disease images. The uneven light and leaf overlap in complex situations make segmentation of leaves and diseases quite difficult. Moreover, the significant differences in ratios of leaf and disease pixels results in a challenge in identifying diseases. Methods To solve the above issues, the residual attention mechanism combined with atrous spatial pyramid pooling and weight compression loss of UNet is proposed, which is named RAAWC-UNet. Firstly, weights compression loss is a method that introduces a modulation factor in front of the cross-entropy loss, aiming at solving the problem of the imbalance between foreground and background pixels. Secondly, the residual network and the convolutional block attention module are combined to form Res_CBAM. It can accurately localize pixels at the edge of the disease and alleviate the vanishing of gradient and semantic information from downsampling. Finally, in the last layer of downsampling, the atrous spatial pyramid pooling is used instead of two convolutions to solve the problem of insufficient spatial context information. Results The experimental results show that the proposed RAAWC-UNet increases the intersection over union in leaf and disease segmentation by 1.91% and 5.61%, and the pixel accuracy of disease by 4.65% compared with UNet. Discussion The effectiveness of the proposed method was further verified by the better results in comparison with deep learning methods with similar network architectures.
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Affiliation(s)
- Jianlong Wang
- School of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China
| | - Junhao Jia
- School of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China
| | - Yake Zhang
- School of Computer and Information Engineering, Henan Normal University, Xinxiang, China
| | - Haotian Wang
- School of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China
| | - Shisong Zhu
- School of Computer Science and Technology, Henan Polytechnic University, Jiaozuo, China
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Majidian P, Ghorbani HR, Farajpour M. Achieving agricultural sustainability through soybean production in Iran: Potential and challenges. Heliyon 2024; 10:e26389. [PMID: 38404839 PMCID: PMC10884498 DOI: 10.1016/j.heliyon.2024.e26389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 01/17/2024] [Accepted: 02/12/2024] [Indexed: 02/27/2024] Open
Abstract
The utilization of soybean as a key oil crop to enhance sustainable agriculture has garnered significant attention from researchers. Its lower water requirements compared to rice, along with its reduced environmental impact, including greenhouse gas emissions, improved water quality, enhanced biodiversity, and efficient resource utilization, make it an attractive option. Unfortunately, Iran, like many other developing countries, heavily relies on soybean imports (over 90%) to meet the demand for oil and protein in human and livestock food rations. The decline in soybean production, coupled with diminishing cultivation areas, yield rates, and increasing import needs, underscores the urgent need to address the challenges faced in Iran. The decline in soybean production in the country can be attributed to various factors, including environmental stresses (both biotic and abiotic), limited variation in soybean cultivars, inadequate mechanization for cultivation, and economic policies. Hence, this review provides a comprehensive overview of the current status of soybean production in Iran and highlights its potential to enhance sustainable agriculture. Additionally, it examines the challenges and constraints associated with soybean cultivation, such as environmental changes and unbalanced marketing, and explores potential solutions and management strategies to bridge the gap between small-scale and large-scale production. Given the increasing global demand for plant-based protein and the significance of the feed industry, studying the limitations faced by countries with slower soybean production growth can shed light on the issues and present opportunities to capitalize on novel soybean advancements in the future. By addressing these challenges and unlocking the potential of soybean cultivation, Iran can contribute to sustainable agricultural practices and attain a more resilient food system.
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Affiliation(s)
- Parastoo Majidian
- Crop and Horticultural Science Research Department, Mazandaran Agricultural and Natural Resources Research and Education Center, Agricultural Research, Education and Extension Organization (AREEO), Sari, Iran
| | - Hamid Reza Ghorbani
- Crop and Horticultural Science Research Department, Mazandaran Agricultural and Natural Resources Research and Education Center, Agricultural Research, Education and Extension Organization (AREEO), Sari, Iran
| | - Mostafa Farajpour
- Crop and Horticultural Science Research Department, Mazandaran Agricultural and Natural Resources Research and Education Center, Agricultural Research, Education and Extension Organization (AREEO), Sari, Iran
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Anum H, Tong Y, Cheng R. Different Preharvest Diseases in Garlic and Their Eco-Friendly Management Strategies. PLANTS (BASEL, SWITZERLAND) 2024; 13:267. [PMID: 38256820 PMCID: PMC10818302 DOI: 10.3390/plants13020267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2023] [Revised: 12/15/2023] [Accepted: 01/04/2024] [Indexed: 01/24/2024]
Abstract
BACKGROUND garlic reproduces mainly through clove planting, as sexual reproduction via seeds is uncommon. Growers encounter challenges with pathogens due to the larger size and vegetative nature of seed cloves, as well as the storage conditions conducive to fungal growth. Some Phyto-pathogenic fungi, previously unrecognized as garlic infections, can remain latent within bulb tissues long after harvest. Although outwardly healthy, these infected bulbs may develop rot under specific conditions. AIM OF REVIEW planting diseased seed cloves can contaminate field soil, with some fungal and bacterial infections persisting for extended periods. The substantial size of seed cloves makes complete eradication of deeply ingrained infections difficult, despite the use of systemic fungicides during the preplanting and postharvest phases. Additionally, viruses, resistant to fungicides, persist in vegetative material. They are prevalent in much of the garlic used for planting, and their host vectors are difficult to eliminate. To address these challenges, tissue-culture techniques are increasingly employed to produce disease-free planting stock. Key scientific concepts of the review: garlic faces a concealed spectrum of diseases that pose a global challenge, encompassing fungal threats like Fusarium's vascular wilt and Alternaria's moldy rot, bacterial blights, and the elusive garlic yellow stripe virus. The struggle to eliminate deeply ingrained infections is exacerbated by the substantial size of seed cloves. Moreover, viruses persist in garlic seeds, spreading through carrier vectors, and remain unaffected by fungicides. This review emphasizes eco-friendly strategies to address these challenges, focusing on preventive measures, biocontrol agents, and plant extracts. Tissue-culture techniques emerge as a promising solution for generating disease-free garlic planting material. The review advocates for ongoing research to ensure sustainable garlic cultivation, recognizing the imperative of safeguarding this culinary staple from an array of fungal and viral threats.
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Affiliation(s)
- Hadiqa Anum
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (H.A.); (R.C.)
| | - Yuxin Tong
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (H.A.); (R.C.)
- Key Laboratory of Energy Conservation and Waste Management of Agricultural Structures, Ministry of Agriculture, Beijing 100081, China
| | - Ruifeng Cheng
- Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (H.A.); (R.C.)
- Key Laboratory of Energy Conservation and Waste Management of Agricultural Structures, Ministry of Agriculture, Beijing 100081, China
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Waheed A, Haxim Y, Islam W, Ahmad M, Muhammad M, Alqahtani FM, Hashem M, Salih H, Zhang D. Climate change reshaping plant-fungal interaction. ENVIRONMENTAL RESEARCH 2023; 238:117282. [PMID: 37783329 DOI: 10.1016/j.envres.2023.117282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Revised: 09/13/2023] [Accepted: 09/29/2023] [Indexed: 10/04/2023]
Abstract
Plant diseases pose a severe threat to modern agriculture, necessitating effective and lasting control solutions. Environmental factors significantly shape plant ecology. Human-induced greenhouse gas emissions have led to global temperature rise, impacting various aspects, including carbon dioxide (CO2) concentration, temperature, ozone (O3), and ultraviolet-B, all of which influence plant diseases. Altered pathogen ranges can accelerate disease transmission. This review explores environmental effects on plant diseases, with climate change affecting fungal biogeography, disease incidence, and severity, as well as agricultural production. Moreover, we have discussed how climate change influences pathogen development, host-fungal interactions, the emergence of new races of fungi, and the dissemination of emerging fungal diseases across the globe. The discussion about environment-mediated impact on pattern-triggered immunity (PTI), effector-triggered immunity (ETI), and RNA interference (RNAi) is also part of this review. In conclusion, the review underscores the critical importance of understanding how climate change is reshaping plant-fungal interactions. It highlights the need for continuous research efforts to elucidate the mechanisms driving these changes and their ecological consequences. As the global climate continues to evolve, it is imperative to develop innovative strategies for mitigating the adverse effects of fungal pathogens on plant health and food security.
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Affiliation(s)
- Abdul Waheed
- National Key Laboratory of Ecological Security and Resource Utilization in Arid Areas, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Xinjiang Key Laboratory of Conservation and Utilization of Plant Gene Resources, Xinjiang Institute of Ecology & Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Turpan Eremophytes Botanical Garden, Chinese Academy of Sciences, Turpan, 838008, China
| | - Yakoopjan Haxim
- National Key Laboratory of Ecological Security and Resource Utilization in Arid Areas, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Xinjiang Key Laboratory of Conservation and Utilization of Plant Gene Resources, Xinjiang Institute of Ecology & Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Turpan Eremophytes Botanical Garden, Chinese Academy of Sciences, Turpan, 838008, China
| | - Waqar Islam
- Xinjiang Key Laboratory of Desert Plant Roots Ecology and Vegetation Restoration, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China
| | | | - Murad Muhammad
- Xinjiang Key Laboratory of Conservation and Utilization of Plant Gene Resources, Xinjiang Institute of Ecology & Geography, Chinese Academy of Sciences, Urumqi, 830011, China
| | - Fatmah M Alqahtani
- Department of Biology, College of Science, King Khalid University, Abha, 61413, Saudi Arabia
| | - Mohamed Hashem
- Department of Biology, College of Science, King Khalid University, Abha, 61413, Saudi Arabia
| | - Haron Salih
- National Key Laboratory of Ecological Security and Resource Utilization in Arid Areas, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Xinjiang Key Laboratory of Conservation and Utilization of Plant Gene Resources, Xinjiang Institute of Ecology & Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Turpan Eremophytes Botanical Garden, Chinese Academy of Sciences, Turpan, 838008, China
| | - Daoyuan Zhang
- National Key Laboratory of Ecological Security and Resource Utilization in Arid Areas, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Xinjiang Key Laboratory of Conservation and Utilization of Plant Gene Resources, Xinjiang Institute of Ecology & Geography, Chinese Academy of Sciences, Urumqi, 830011, China; Turpan Eremophytes Botanical Garden, Chinese Academy of Sciences, Turpan, 838008, China.
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Sun B, Zhou R, Zhu G, Xie X, Chai A, Li L, Fan T, Li B, Shi Y. Transcriptome Analysis Reveals the Involvement of Mitophagy and Peroxisome in the Resistance to QoIs in Corynespora cassiicola. Microorganisms 2023; 11:2849. [PMID: 38137993 PMCID: PMC10745780 DOI: 10.3390/microorganisms11122849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Revised: 11/08/2023] [Accepted: 11/21/2023] [Indexed: 12/24/2023] Open
Abstract
Quinone outside inhibitor fungicides (QoIs) are crucial fungicides for controlling plant diseases, but resistance, mainly caused by G143A, has been widely reported with the high and widespread use of QoIs. However, two phenotypes of Corynespora casiicola (RI and RII) with the same G143A showed significantly different resistance to QoIs in our previous study, which did not match the reported mechanisms. Therefore, transcriptome analysis of RI and RII strains after trifloxystrobin treatment was used to explore the new resistance mechanism in this study. The results show that 332 differentially expressed genes (DEGs) were significantly up-regulated and 448 DEGs were significantly down-regulated. The results of GO and KEGG enrichment showed that DEGs were most enriched in ribosomes, while also having enrichment in peroxide, endocytosis, the lysosome, autophagy, and mitophagy. In particular, mitophagy and peroxisome have been reported in medicine as the main mechanisms of reactive oxygen species (ROS) scavenging, while the lysosome and endocytosis are an important organelle and physiological process, respectively, that assist mitophagy. The oxidative stress experiments showed that the oxidative stress resistance of the RII strains was significantly higher than that of the RI strains: specifically, it was more than 1.8-fold higher at a concentration of 0.12% H2O2. This indicates that there is indeed a significant difference in the scavenging capacity of ROS between the two phenotypic strains. Therefore, we suggest that QoIs' action caused a high production of ROS, and that scavenging mechanisms such as mitophagy and peroxisomes functioned in RII strains to prevent oxidative stress, whereas RI strains were less capable of resisting oxidative stress, resulting in different resistance to QoIs. In this study, it was first revealed that mitophagy and peroxisome mechanisms available for ROS scavenging are involved in the resistance of pathogens to fungicides.
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Affiliation(s)
| | | | | | | | | | | | | | - Baoju Li
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (B.S.); (R.Z.)
| | - Yanxia Shi
- State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China; (B.S.); (R.Z.)
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Buśko M, Gracka A, Jeleń H, Szablewska KS, Przybylska-Balcerek A, Szwajkowska-Michałek L, Góral T. The Effect of Organic and Conventional Cultivation Systems on the Profile of Volatile Organic Compounds in Winter Wheat Grain, Including Susceptibility to Fusarium Head Blight. Metabolites 2023; 13:1045. [PMID: 37887370 PMCID: PMC10609054 DOI: 10.3390/metabo13101045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Revised: 09/26/2023] [Accepted: 09/27/2023] [Indexed: 10/28/2023] Open
Abstract
The grain of 30 winter wheat cultivars differing in terms of their resistance to FHB (Fusarium head blight) was tested. The cultivars were grown in four variants of field trials established in a split-plot design: control without fungicides, chemical control of FHB with fungicides after Fusarium inoculation, Fusarium head inoculation, and organic cultivation. The profile of volatile compounds in grain samples was determined by mean headspace-solid phase microextraction and analyzed by gas chromatography time-of-flight mass spectroscopy. The identified volatile profile comprised 146 compounds belonging to 14 chemical groups. The lowest abundance of volatile organic compounds (VOCs) was found for the organic cultivation variant. The performed discriminant analysis facilitated the complete separation of grain for individual experimental variants based on the number of VOCs decreasing from 116 through 62, 37 down to 14. The grain from organic farming was characterized by a significantly different VOCs profile than the grain from the other variants of the experiment. The compounds 1-methylcycloheptanol, 2-heptanone, 2(3H)-furanone, and 5-hexyldihydro-2(3H)-furanone showed statistically significant differences between all four experimental variants.
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Affiliation(s)
- Maciej Buśko
- Department of Chemistry, Poznań University of Life Sciences, 60-625 Poznań, Poland; (M.B.); (K.S.S.); (L.S.-M.)
| | - Anna Gracka
- Food Volatilomics and Sensomics Group, Faculty of Food Science and Nutrition, Poznań University of Life Sciences, 60-624 Poznań, Poland; (A.G.); (H.J.)
| | - Henryk Jeleń
- Food Volatilomics and Sensomics Group, Faculty of Food Science and Nutrition, Poznań University of Life Sciences, 60-624 Poznań, Poland; (A.G.); (H.J.)
| | - Kinga Stuper Szablewska
- Department of Chemistry, Poznań University of Life Sciences, 60-625 Poznań, Poland; (M.B.); (K.S.S.); (L.S.-M.)
| | - Anna Przybylska-Balcerek
- Department of Chemistry, Poznań University of Life Sciences, 60-625 Poznań, Poland; (M.B.); (K.S.S.); (L.S.-M.)
| | - Lidia Szwajkowska-Michałek
- Department of Chemistry, Poznań University of Life Sciences, 60-625 Poznań, Poland; (M.B.); (K.S.S.); (L.S.-M.)
| | - Tomasz Góral
- Plant Breeding and Acclimatization Institute-National Research Institute, 05-870 Radzików, Poland;
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Tiwari G, Pandey P, Kaul R, Singh R. Farmers' perception of the ecosystem services provided by diurnal raptors in arid Rajasthan. PeerJ 2023; 11:e15996. [PMID: 37637155 PMCID: PMC10460152 DOI: 10.7717/peerj.15996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Accepted: 08/08/2023] [Indexed: 08/29/2023] Open
Abstract
Farmers are the most important stakeholders in wildlife conservation in the agricultural landscape. Understanding the farmer's perceptions, attitude, behaviour, and knowledge toward conservation is critical in developing an effective conservation programme in human-dominated landscapes. We conducted semi-structured face-to-face interviews with 373 farmers to understand the farmer's perception of ecosystem services provided by diurnal raptors in the arid region of Rajasthan from July 2020 to February 2021 and from August 2021 to January 2022. We grouped ecosystem services and disservices into larger categories and estimated the correlation between them, finding that disservices are negatively correlated with benefits. Raptors were perceived as beneficial for their role in controlling rodents and pests, but negatively for poultry predation. In addition, we built a binomial generalised linear model with a logit function to better understand the factors that influence farmers' perceptions of raptors (positive or negative). We observed that males and females have different attitudes toward the ecosystem services provided by raptors. It is critical to understand social perceptions in order to conserve species that are rare on a global scale but may face negative perceptions on a local scale. Our study connects ecological information with socio-demographic factors, which can be useful in developing policy measures for raptor conservation.
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Affiliation(s)
- Govind Tiwari
- Amity Institute of Forestry and Wildlife, Amity University, Noida, Uttar Pradesh, India
| | - Puneet Pandey
- Enprotec India Foundation, Dehardun, Uttarakhand, India
- Conservation Genome Resource Bank for Korean Wildlife (CGRB), Research Institute for Veterinary Science and College of Veterinary Medicine, Seoul National University, Seoul, Republic of Korea, Seoul, Seoul, Republic of Korea
| | - Rahul Kaul
- Wildlife Trust of India, Noida, Uttar Pradesh, India
| | - Randeep Singh
- Amity Institute of Forestry and Wildlife, Amity University, Noida, Uttar Pradesh, India
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Hsieh TF, Shen YM, Huang JH, Tsai JN, Lu MT, Lin CP. Insights into Grape Ripe Rot: A Focus on the Colletotrichum gloeosporioides Species Complex and Its Management Strategies. PLANTS (BASEL, SWITZERLAND) 2023; 12:2873. [PMID: 37571026 PMCID: PMC10421077 DOI: 10.3390/plants12152873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 07/27/2023] [Accepted: 08/03/2023] [Indexed: 08/13/2023]
Abstract
Grape ripe rot, which is predominantly caused by the Colletotrichum species, presents a growing threat to global grape cultivation. This threat is amplified by the increasing populations of the Colletotrichum species in response to warmer climates. In this review, we investigate the wide-ranging spectrum of grape ripe rot, specifically highlighting the role and characteristics of the C. gloeosporioides species complex (CGSC). We incorporate this understanding as we explore the diverse symptoms that lead to infected grapevines, their intricate life cycle and epidemiology, and the escalating prevalence of C. viniferum in Asia and globally. Furthermore, we delve into numerous disease management strategies, both conventional and emerging, such as prevention and mitigation measures. These strategies include the examination of host resistances, beneficial cultivation practices, sanitation measures, microbiome health maintenance, fungicide choice and resistance, as well as integrated management approaches. This review seeks to enhance our understanding of this globally significant disease, aspiring to assist in the development and improvement of effective prevention and control strategies.
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Affiliation(s)
- Ting-Fang Hsieh
- Plant Pathology Division, Taiwan Agricultural Research Institute, Taichung City 41362, Taiwan; (T.-F.H.); (J.-H.H.); (J.-N.T.)
| | - Yuan-Min Shen
- Master Program for Plant Medicine, College of Bio-Resources and Agriculture, National Taiwan University, Taipei 10617, Taiwan;
| | - Jin-Hsing Huang
- Plant Pathology Division, Taiwan Agricultural Research Institute, Taichung City 41362, Taiwan; (T.-F.H.); (J.-H.H.); (J.-N.T.)
| | - Jyh-Nong Tsai
- Plant Pathology Division, Taiwan Agricultural Research Institute, Taichung City 41362, Taiwan; (T.-F.H.); (J.-H.H.); (J.-N.T.)
| | - Ming-Te Lu
- Crop Science Division, Taiwan Agricultural Research Institute, Taichung City 41326, Taiwan;
| | - Chu-Ping Lin
- Plant Pathology Division, Taiwan Agricultural Research Institute, Taichung City 41362, Taiwan; (T.-F.H.); (J.-H.H.); (J.-N.T.)
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12
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Rehman FU, Paker NP, Khan M, Naeem M, Munis MFH, Rehman SU, Chaudhary HJ. Bio-fabrication of zinc oxide nanoparticles from Picea smithiana and their potential antimicrobial activities against Xanthomonas campestris pv. Vesicatoria and Ralstonia solanacearum causing bacterial leaf spot and bacterial wilt in tomato. World J Microbiol Biotechnol 2023; 39:176. [PMID: 37115313 DOI: 10.1007/s11274-023-03612-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 04/07/2023] [Indexed: 04/29/2023]
Abstract
Due to an inevitable disadvantage of chemical or physical synthesis routes, biosynthesis approach to nanoparticles, especially metallic oxide is attractive nowadays. Metallic oxides nanoparticles present a new approach to the control of plant pathogens. ZnO nanoparticles (ZNPs) have very important role in phytopathology. In current study, biosynthesized ZNPs were tested against two devastating bacterial pathogens including Xanthomonas campestris pv. vesicatoria and Ralstonia solanacearum causing bacterial leaf spot and bacterial wilt in tomato. ZNPs were produced using a new extract from the plant Picea smithiana using an environmentally friendly, cost-effective and simple procedure. Zinc acetate was added to P. smithiana extract, stirred and heated to 200 °C. The white precipitation at the bottom were clear indication of synthesis of nanoparticles, which were further dried by subjecting them at 450 °C. X-ray diffraction pattern determined that the ZNPs had a crystallite size of about 26 nm, Fourier transform infrared spectroscopy indicated a peak between 450 and 550 cm-1 and the particle size estimated by dynamic light scattering was about 25 nm on average. Scanning electron microscopic analysis indicated that the particles were hexagonal in shape 31 nm in diameter. Antibacterial tests showed ZNPs synthesized by P. smithiana resulted in clear inhibition zones of 20.1 ± 1.5 and 18.9 ± 1.5 mm and 44.74 and 45.63% reduction in disease severity and 78.40 and 80.91% reduction in disease incidence in X. compestris pv. vesicatoria and R. solanacearum respectively at concentration of 100 µg/ml. Our findings reveal that the concentration of ZNPs was important for their efficient antibacterial activity. Overall, the biosynthesized ZNPs have been found to have effective antimicrobial activities against bacterial wilt and bacterial leaf spot in tomato.
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Affiliation(s)
- Fazal Ur Rehman
- Department of Plant Sciences, Faculty of Biological Sciences, Quaid-I-Azam University, Islamabad, 45320, Pakistan
| | - Najeeba Paree Paker
- Department of Plant Sciences, Faculty of Biological Sciences, Quaid-I-Azam University, Islamabad, 45320, Pakistan
| | - Mohsin Khan
- Department of Plant Sciences, Faculty of Biological Sciences, Quaid-I-Azam University, Islamabad, 45320, Pakistan
| | - Muhammad Naeem
- Department of Plant Breeding and Genetics, Faculty of Agriculture and Environment, The Islamia University of Bahawalpur, Bahawalpur, Pakistan
| | | | - Shafiq Ur Rehman
- Department of Botany, University of Okara, Okara, 56300, Pakistan
| | - Hassan Javed Chaudhary
- Department of Plant Sciences, Faculty of Biological Sciences, Quaid-I-Azam University, Islamabad, 45320, Pakistan.
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13
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Marquez J, Hajihassani A. Successional effects of cover cropping and deep tillage on suppression of plant-parasitic nematodes and soilborne fungal pathogens. PEST MANAGEMENT SCIENCE 2023. [PMID: 36914802 DOI: 10.1002/ps.7450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2022] [Revised: 02/20/2023] [Accepted: 03/14/2023] [Indexed: 06/18/2023]
Abstract
BACKGROUND Cover crops can suppress soilborne nematodes and fungal pathogens by serving as a poor host to pathogens and producing allelopathic compounds. Yet, cultural practices can influence their effectiveness. Cover crop and weedy fallow rotations and their interactions with deep tillage were evaluated from 2019 to 2021 in a three-season vegetable cropping system (spring tomato, fall squash, and winter cabbage) for their suppressive effects on soilborne diseases. Experimental plots were arranged in a split-plot 2 × 4 factorial design in randomized complete blocks. Whole-plot tillage treatments were shallow-tilled or deep-tilled. Subplots had two factors of crop rotations: rotation type (cover crop [spring or fall sunn hemp or winter rye] or weedy fallow) and rotation season. RESULTS Independent of tillage practice, sunn hemp and weedy fallow reduced population density and root galling severity of root-knot nematode (Meloidogyne incognita) for the first subsequent vegetable compared to the all-vegetable rotation (P < 0.05) but had little effect on fungal pathogens. Fall sunn hemp had higher plant biomass and reduced gall severity for the second subsequent vegetable. Spring and fall sunn hemp improved vegetable yields. Winter rye only reduced ring nematodes (Mesocriconema spp.) population density in the first subsequent vegetable. Deep tillage reduced incidence of fungal pathogens of Rhizoctonia solani and Sclerotinia sclerotiorum, and population density of stubby-root nematode (Nanidorus minor). CONCLUSION Sunn hemp is effective in suppressing M. incognita, whereas deep tillage can be used to suppress R. solani, S. sclerotiorum, and N. minor in vegetable production systems. © 2023 Society of Chemical Industry.
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Affiliation(s)
- Josiah Marquez
- Department of Plant Pathology, University of Georgia, Tifton, GA, USA
| | - Abolfazl Hajihassani
- Department of Entomology and Nematology, Fort Lauderdale Research and Education Center, Institute of Food and Agricultural Sciences, University of Florida, Davie, FL, USA
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Benito P, Ligorio D, Bellón J, Yenush L, Mulet JM. Use of Yucca ( Yucca schidigera) Extracts as Biostimulants to Promote Germination and Early Vigor and as Natural Fungicides. PLANTS (BASEL, SWITZERLAND) 2023; 12:274. [PMID: 36678987 PMCID: PMC9865292 DOI: 10.3390/plants12020274] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Revised: 12/30/2022] [Accepted: 01/03/2023] [Indexed: 06/17/2023]
Abstract
Climate change is increasing drought and salinity in many cultivated areas, therefore threatening food production. There is a great demand for novel agricultural inputs able to maintain yield under the conditions imposed by the anthropogenic global warming. Biostimulants have been proposed as a useful tool to achieve this objective. We have investigated the biostimulant effect of different yucca (Yucca schidigera) extracts on plant growth at different stages of development under different abiotic stress conditions. The extracts were tested in the model plant Arabidopsis thaliana, and in three different crops; tomato (Solanum lycopersicum var microtom), broccoli (Brassica oleracea var. italica) and lettuce (Lactuca sativa var romana). We have found that the investigated extracts are able to promote germination and early vigor under drought/osmotic and salt stress induced either by sodium chloride or lithium chloride. This effect is particularly strong in Arabidopsis thaliana and in the Brassicaceae broccoli. We have also determined using antibiograms against the model yeast Saccharomyces cerevisiae that the evaluated extracts may be used also as a natural fungicide. The results in this report show that yucca extracts may be used to enhance early vigor in some crops and as a natural fungicide, providing a new and useful tool for farmers.
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Affiliation(s)
- Patricia Benito
- Instituto de Biología Molecular y Celular de Plantas (IBMCP), Universitat Politècnica de València-Consejo Superior de Investigaciones Científicas, 46022 Valencia, Spain
- Caldic Ibérica, S. L. U. Llobateras 23–25, pol.ind. Santiga, Barberà del Vallés, 08210 Barcelona, Spain
| | - Daniele Ligorio
- Instituto de Biología Molecular y Celular de Plantas (IBMCP), Universitat Politècnica de València-Consejo Superior de Investigaciones Científicas, 46022 Valencia, Spain
| | - Javier Bellón
- Caldic Ibérica, S. L. U. Llobateras 23–25, pol.ind. Santiga, Barberà del Vallés, 08210 Barcelona, Spain
| | - Lynne Yenush
- Instituto de Biología Molecular y Celular de Plantas (IBMCP), Universitat Politècnica de València-Consejo Superior de Investigaciones Científicas, 46022 Valencia, Spain
| | - José M. Mulet
- Instituto de Biología Molecular y Celular de Plantas (IBMCP), Universitat Politècnica de València-Consejo Superior de Investigaciones Científicas, 46022 Valencia, Spain
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15
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Sommermann L, Babin D, Behr JH, Chowdhury SP, Sandmann M, Windisch S, Neumann G, Nesme J, Sørensen SJ, Schellenberg I, Rothballer M, Geistlinger J, Smalla K, Grosch R. Long-Term Fertilization Strategy Impacts Rhizoctonia solani–Microbe Interactions in Soil and Rhizosphere and Defense Responses in Lettuce. Microorganisms 2022; 10:microorganisms10091717. [PMID: 36144319 PMCID: PMC9501836 DOI: 10.3390/microorganisms10091717] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Revised: 08/04/2022] [Accepted: 08/17/2022] [Indexed: 11/16/2022] Open
Abstract
The long-term effects of agricultural management such as different fertilization strategies on soil microbiota and soil suppressiveness against plant pathogens are crucial. Therefore, the suppressiveness of soils differing in fertilization history was assessed using two Rhizoctonia solani isolates and their respective host plants (lettuce, sugar beet) in pot experiments. Further, the effects of fertilization history and the pathogen R. solani AG1-IB on the bulk soil, root-associated soil and rhizosphere microbiota of lettuce were analyzed based on amplicon sequencing of the 16S rRNA gene and ITS2 region. Organic fertilization history supported the spread of the soil-borne pathogens compared to long-term mineral fertilization. The fertilization strategy affected bacterial and fungal community composition in the root-associated soil and rhizosphere, respectively, but only the fungal community shifted in response to the inoculated pathogen. The potential plant-beneficial genus Talaromyces was enriched in the rhizosphere by organic fertilization and presence of the pathogen. Moreover, increased expression levels of defense-related genes in shoots of lettuce were observed in the soil with organic fertilization history, both in the absence and presence of the pathogen. This may reflect the enrichment of potential plant-beneficial microorganisms in the rhizosphere, but also pathogen infestation. However, enhanced defense responses resulted in retarded plant growth in the presence of R. solani (plant growth/defense tradeoff).
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Affiliation(s)
- Loreen Sommermann
- Department of Agriculture, Ecotrophology and Landscape Development, Anhalt University of Applied Sciences, 06406 Bernburg, Germany
- Correspondence:
| | - Doreen Babin
- Julius Kühn-Institute (JKI)—Federal Research Centre for Cultivated Plants, Institute for Epidemiology and Pathogen Diagnostics, 38104 Braunschweig, Germany
| | - Jan Helge Behr
- Plant-Microbe Systems, Leibniz Institute of Vegetable and Ornamental Crops (IGZ), 14979 Großbeeren, Germany
| | - Soumitra Paul Chowdhury
- Institute of Network Biology, Helmholtz Zentrum München, German Research Center for Environmental Health, 85764 Neuherberg, Germany
| | - Martin Sandmann
- Plant-Microbe Systems, Leibniz Institute of Vegetable and Ornamental Crops (IGZ), 14979 Großbeeren, Germany
| | - Saskia Windisch
- Institute of Crop Science (340h), University of Hohenheim, 70599 Stuttgart, Germany
| | - Günter Neumann
- Institute of Crop Science (340h), University of Hohenheim, 70599 Stuttgart, Germany
| | - Joseph Nesme
- Section of Microbiology, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark
| | - Søren J. Sørensen
- Section of Microbiology, Department of Biology, University of Copenhagen, 2100 Copenhagen, Denmark
| | - Ingo Schellenberg
- Department of Agriculture, Ecotrophology and Landscape Development, Anhalt University of Applied Sciences, 06406 Bernburg, Germany
| | - Michael Rothballer
- Institute of Network Biology, Helmholtz Zentrum München, German Research Center for Environmental Health, 85764 Neuherberg, Germany
| | - Joerg Geistlinger
- Department of Agriculture, Ecotrophology and Landscape Development, Anhalt University of Applied Sciences, 06406 Bernburg, Germany
| | - Kornelia Smalla
- Julius Kühn-Institute (JKI)—Federal Research Centre for Cultivated Plants, Institute for Epidemiology and Pathogen Diagnostics, 38104 Braunschweig, Germany
| | - Rita Grosch
- Plant-Microbe Systems, Leibniz Institute of Vegetable and Ornamental Crops (IGZ), 14979 Großbeeren, Germany
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16
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Farooq QUA, Hardy GESJ, McComb JA, Thomson PC, Burgess TI. Changes to the Bacterial Microbiome in the Rhizosphere and Root Endosphere of Persea americana (Avocado) Treated With Organic Mulch and a Silicate-Based Mulch or Phosphite, and Infested With Phytophthora cinnamomi. Front Microbiol 2022; 13:870900. [PMID: 35572652 PMCID: PMC9097018 DOI: 10.3389/fmicb.2022.870900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Accepted: 03/11/2022] [Indexed: 11/13/2022] Open
Abstract
Plant growth and responses of the microbial profile of the rhizosphere soil and root endosphere were investigated for avocado plants infested or not infested with Phytophthora cinnamomi and the changes were compared in plants grown with various soil additives or by spraying plants with phosphite. Soil treatments were organic mulches or silica-based mineral mulch. Reduction of root growth and visible root damage was least in the infested plants treated with phosphite or mineral mulch applied to the soil. Rhizosphere soils and root endospheres were analyzed for bacterial communities using metabarcoding. Bacterial abundance and diversity were reduced in infested rhizospheres and root endospheres. The presence or absence of mineral mulch resulted in greater diversity and larger differences in rhizosphere community composition between infested and non-infested pots than any other treatment. Some rhizosphere bacterial groups, especially Actinobacteria and Proteobacteria, had significantly higher relative abundance in the presence of Phytophthora. The bacterial communities of root endospheres were lower in abundance than rhizosphere communities and not affected by soil treatments or phosphite but increased in abundance after infection with P. cinnamomi. These findings suggested that the addition of silicate-based mineral mulch protects against Phytophthora root rot, which may be partly mediated through changes in rhizosphere bacterial community composition. However, the changes to the microbiome induced by spraying plants with phosphite are different from those resulting from the application of mineral mulch to the soil.
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Affiliation(s)
- Qurrat Ul Ain Farooq
- Phytophthora Science and Management, Harry Butler Institute, Murdoch University, Perth, WA, Australia
- Institute of Agricultural Sciences, University of the Punjab, Lahore, Pakistan
| | - Giles Edward St. John Hardy
- Phytophthora Science and Management, Harry Butler Institute, Murdoch University, Perth, WA, Australia
- ArborCarbon, ROTA Compound Murdoch University, Murdoch, WA, Australia
| | - Jen A. McComb
- Phytophthora Science and Management, Harry Butler Institute, Murdoch University, Perth, WA, Australia
| | | | - Treena Isobel Burgess
- Phytophthora Science and Management, Harry Butler Institute, Murdoch University, Perth, WA, Australia
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17
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Cheng X, Dai T, Hu Z, Cui T, Wang W, Han P, Hu M, Hao J, Liu P, Liu X. Cytochrome P450 and Glutathione S-Transferase Confer Metabolic Resistance to SYP-14288 and Multi-Drug Resistance in Rhizoctonia solani. Front Microbiol 2022; 13:806339. [PMID: 35387083 PMCID: PMC8977892 DOI: 10.3389/fmicb.2022.806339] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 01/26/2022] [Indexed: 11/17/2022] Open
Abstract
SYP-14288 is a fungicide as an uncoupler of oxidative phosphorylation, which is effective in controlling fungal pathogens like Rhizoctonia solani. To determine whether R. solani can develop SYP-14288 resistance and possibly multi-drug resistance (MDR), an SYP-14288-resistant mutant of R. solani X19-7 was generated from wild-type strain X19, and the mechanism of resistance was studied through metabolic and genetic assays. From metabolites of R. solani treated with SYP-14288, three compounds including M1, M2, and M3 were identified according to UPLC-MS/MS analysis, and M1 accumulated faster than M2 and M3 in X19-7. When X19-7 was treated by glutathione-S-transferase (GST) inhibitor diethyl maleate (DEM) and SYP-14288 together, or by DEM plus one of tested fungicides that have different modes of action, a synergistic activity of resistance occurred, implying that GSTs promoted metabolic resistance against SYP-14288 and therefore led to MDR. By comparing RNA sequences between X19-7 and X19, six cytochrome P450s (P450s) and two GST genes were selected as a target, which showed a higher expression in X19-7 than X19 both before and after the exposure to SYP-14288. Furthermore, heterologous expression of P450 and GST genes in yeast was conducted to confirm genes involved in metabolic resistance. In results, the P450 gene AG1IA_05136 and GST gene AG1IA_07383 were related to fungal resistance to multiple fungicides including SYP-14288, fluazinam, chlorothalonil, and difenoconazole. It was the first report that metabolic resistance of R. solani to uncouplers was associated with P450 and GST genes.
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Affiliation(s)
- Xingkai Cheng
- Department of Plant Pathology, China Agricultural University, Beijing, China
| | - Tan Dai
- Department of Plant Pathology, China Agricultural University, Beijing, China
| | - Zhihong Hu
- Institute of Quality Standard and Testing Technology, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Tongshan Cui
- Department of Plant Pathology, China Agricultural University, Beijing, China
| | - Weizhen Wang
- Department of Plant Pathology, China Agricultural University, Beijing, China
| | - Ping Han
- Institute of Quality Standard and Testing Technology, Beijing Academy of Agriculture and Forestry Sciences, Beijing, China
| | - Maolin Hu
- Shenzhen Agricultural Technology Promotion Center, Shenzhen, China
| | - Jianjun Hao
- School of Food and Agriculture, University of Maine, Orono, ME, United States
| | - Pengfei Liu
- Department of Plant Pathology, China Agricultural University, Beijing, China
| | - Xili Liu
- Department of Plant Pathology, China Agricultural University, Beijing, China
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18
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Chiu MC, Chen CL, Chen CW, Lin HJ. Weather fluctuation can override the effects of integrated nutrient management on fungal disease incidence in the rice fields in Taiwan. Sci Rep 2022; 12:4273. [PMID: 35277560 PMCID: PMC8917239 DOI: 10.1038/s41598-022-08139-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Accepted: 03/03/2022] [Indexed: 11/26/2022] Open
Abstract
Both weather fluctuation and farming system influence the epidemiology of crop diseases. However, short-term experiments are difficult to mechanistically extrapolate into long-term ecological responses. Using a mechanistic model with Bayesian inference, long-term data spanning 10 years were used to construct relationships among weather fluctuation (temperature, relative humidity, wind, and rainfall), farming system (conventional and low-external-input farming), and crop disease in experimental rice fields in Taiwan. Conventional and low-external-input farming had similar influences on the disease incidence of rice blast. Temperature had a positive influence on the disease incidence only under high relative humidity. Rainfall positively affected the disease incidence until an optimum level of rainfall. Low-external-input farming, with a lower application of fertilizers and other sustainable nutrient management, achieved similar effects on the disease incidence to those achieved by conventional farming. This suggests that weather fluctuation may override the effect of the farming systems on fungal disease incidence in rice fields.
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Affiliation(s)
- Ming-Chih Chiu
- Department of Life Sciences and Innovation and Development Center of Sustainable Agriculture, National Chung Hsing University, Taichung City, 40227, Taiwan
- Department of Entomology, National Chung Hsing University, Taichung City, 40227, Taiwan
| | - Chi-Ling Chen
- Taiwan Agricultural Research Institute, Council of Agriculture, Executive Yuan, Taichung City, 41362, Taiwan.
| | - Chun-Wei Chen
- Taiwan Agricultural Research Institute, Council of Agriculture, Executive Yuan, Taichung City, 41362, Taiwan
| | - Hsing-Juh Lin
- Department of Life Sciences and Innovation and Development Center of Sustainable Agriculture, National Chung Hsing University, Taichung City, 40227, Taiwan.
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19
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Raman Spectroscopy and Improved Inception Network for Determination of FHB-Infected Wheat Kernels. Foods 2022; 11:foods11040578. [PMID: 35206055 PMCID: PMC8870785 DOI: 10.3390/foods11040578] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Revised: 02/04/2022] [Accepted: 02/12/2022] [Indexed: 01/02/2023] Open
Abstract
Detection of infected kernels is important for Fusarium head blight (FHB) prevention and product quality assurance in wheat. In this study, Raman spectroscopy (RS) and deep learning networks were used for the determination of FHB-infected wheat kernels. First, the RS spectra of healthy, mild, and severe infection kernels were measured and spectral changes and band attribution were analyzed. Then, the Inception network was improved by residual and channel attention modules to develop the recognition models of FHB infection. The Inception–attention network produced the best determination with accuracies in training set, validation set, and prediction set of 97.13%, 91.49%, and 93.62%, among all models. The average feature map of the channel clarified the important information in feature extraction, itself required to clarify the decision-making strategy. Overall, RS and the Inception–attention network provide a noninvasive, rapid, and accurate determination of FHB-infected wheat kernels and are expected to be applied to other pathogens or diseases in various crops.
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20
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Furiosi M, Hasanaliyeva G, Caffi T, Rossi V. Soil covering and biofumigant effect of Armoracia rusticana against spore dispersal and viability of Downy mildew inoculum in viticultural systems-BIOVINE. BIO WEB OF CONFERENCES 2022. [DOI: 10.1051/bioconf/20225003004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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21
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Gonçalves DDC, Ribeiro WR, Gonçalves DC, Menini L, Costa H. Recent advances and future perspective of essential oils in control Colletotrichum spp.: A sustainable alternative in postharvest treatment of fruits. Food Res Int 2021; 150:110758. [PMID: 34865776 DOI: 10.1016/j.foodres.2021.110758] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Revised: 09/14/2021] [Accepted: 10/12/2021] [Indexed: 11/28/2022]
Abstract
The world population growth has raised concerns about food security. Agricultural systems are asked to satisfy a growing demand for food with increasingly limited resources, and simultaneously still must reduce the impacts on the environment. This scenario encourages the search for safe and sustainable production strategies. Reducing losses in the production process can be one of the main ways to guarantee food safety. In fruticulture, it is estimated that more than 50% of the production can be lost between harvest and the final consumer due to postharvest diseases caused by phytopathogenic fungi. The fungi of the genus Colletotrichum are opportunistic and are associated with several diseases, being the anthracnose the most relevant in terms of the quality and yield losses in fruit species around worldwide. To control these diseases, the use of synthetic fungicides has been the main instrument utilized, however, because of their phytotoxicity to human health, the environment, and strong selection pressure imposed by continuous applications, the fungicides have caused resistance in the pathogen populations. So reducing the excessive application of these products is indispensable for human health and for sustainable Agriculture. Towards this purpose, research has been carried out to identify the phytopathological potentiality of essential oils (EOs) extracted from plants. Therefore, this review aims to contribute to the formation of knowledge bases, about the discoveries, recent advances, and the use of EOs as a strategy to alternatively control fungal disease caused by Colletotrichum spp. in postharvest fruits. Here, we provide valuable information exploring the application potential of essential oils as commercially useful biorational pesticides for food preservation, contributing to sustainable production and global food security.
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Affiliation(s)
- Dalila da Costa Gonçalves
- Instituto Federal do Espírito Santo (IFES - Alegre), Rodovia Br 482, Km 47 s/n, Alegre - ES 29520-000, Brazil.
| | - Wilian Rodrigues Ribeiro
- Centro de Ciências Agrárias e Engenharias da Universidade Federal do Espírito Santo (CCA-UFES), Alto Universitário, S/N Guararema, Alegre - ES 29500-000, Brazil.
| | - Débora Cristina Gonçalves
- Centro de Ciências Agrárias e Engenharias da Universidade Federal do Espírito Santo (CCA-UFES), Alto Universitário, S/N Guararema, Alegre - ES 29500-000, Brazil.
| | - Luciano Menini
- Instituto Federal do Espírito Santo (IFES - Alegre), Rodovia Br 482, Km 47 s/n, Alegre - ES 29520-000, Brazil.
| | - Hélcio Costa
- Fazenda do Estado - Incaper. BR 262, km 94 - Domingos, Martins - ES 29278-000, Brazil.
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22
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Almeida RA, Lemmens P, De Meester L, Brans KI. Differential local genetic adaptation to pesticide use in organic and conventional agriculture in an aquatic non-target species. Proc Biol Sci 2021; 288:20211903. [PMID: 34784768 PMCID: PMC8596010 DOI: 10.1098/rspb.2021.1903] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Accepted: 10/22/2021] [Indexed: 11/25/2022] Open
Abstract
Pesticide application is an important stressor to non-target species and can profoundly affect ecosystem functioning. Debates continue on the choice of agricultural practices regarding their environmental impact, and organic farming is considered less detrimental compared to conventional practices. Nevertheless, comparative studies on the impacts of both agricultural approaches on the genetic adaptation of non-target species are lacking. We assessed to what extent organic and conventional agriculture elicit local genetic adaptation of populations of a non-target aquatic species, Daphnia magna. We tested for genetic differences in sensitivity of different D. magna populations (n = 7), originating from ponds surrounded by conventional and organic agriculture as well as nature reserves, to pesticides used either in conventional (chlorpyrifos) or organic agriculture (deltamethrin and copper sulfate). The results indicate that D. magna populations differentially adapt to local pesticide use. Populations show increased resistance to chlorpyrifos as the percentage of conventional agriculture in the surrounding landscape increases, whereas populations from organic agriculture sites are more resistant to deltamethrin. While organic agriculture is considered less harmful for non-target species than conventional, both types of agriculture shape the evolution of pesticide resistance in non-target species in a specific manner, reflecting the differences in selection pressure.
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Affiliation(s)
- Rafaela A. Almeida
- Laboratory of Aquatic Ecology, Evolution and Conservation, KU Leuven, Ch. Deberiotstraat 32, B-3000 Leuven, Belgium
| | - Pieter Lemmens
- Laboratory of Aquatic Ecology, Evolution and Conservation, KU Leuven, Ch. Deberiotstraat 32, B-3000 Leuven, Belgium
- Leibniz Institute für Gewasserökologie und Binnenfischerei (IGB), Müggelseedamm 310, 12587 Berlin, Germany
| | - Luc De Meester
- Laboratory of Aquatic Ecology, Evolution and Conservation, KU Leuven, Ch. Deberiotstraat 32, B-3000 Leuven, Belgium
- Leibniz Institute für Gewasserökologie und Binnenfischerei (IGB), Müggelseedamm 310, 12587 Berlin, Germany
- Institute of Biology, Freie Universität Berlin, Königin-Luise-Strasse 1-3, 14195 Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research (BBIB), Königin-Luise-Str. 2-4, 14195 Berlin, Germany
| | - Kristien I. Brans
- Laboratory of Aquatic Ecology, Evolution and Conservation, KU Leuven, Ch. Deberiotstraat 32, B-3000 Leuven, Belgium
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Shan A, Pan J, Kang KJ, Pan M, Wang G, Wang M, He Z, Yang X. Effects of straw return with N fertilizer reduction on crop yield, plant diseases and pests and potential heavy metal risk in a Chinese rice paddy: A field study of 2 consecutive wheat-rice cycles. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 288:117741. [PMID: 34280743 DOI: 10.1016/j.envpol.2021.117741] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Revised: 06/18/2021] [Accepted: 07/04/2021] [Indexed: 06/13/2023]
Abstract
Understanding the comprehensive effect on crop production and quality, soil acidification, and Cd accumulation and distribution for wheat-rice rotation under N fertilization and continuous straw return is important for proper contaminated agricultural soil management. A 2-year paddy field experiment was conducted to study the effects of above factors change in the Zhejiang province, China. Fertilization treatments included: conventional N fertilizer application (N3), 20% reduction of N application (N2), 40% reduction of N application (N1), combined with three portions of straw incorporation: all straws retention (N3), half of the straws into the fields (S2), 20% straws retention(S1). The N1 treatments significantly decreased crop yields compared to N2 and N3 treatments. Except for C2-wheat, soil pH generally decreased with increasing N fertilizer input in the order of N1>N2>N3, regardless of how many straws was amended. Moreover, we found that straw addition plus N fertilization had a intersystem impacts on Cd accumulation, distribution and availability. Although total Cd had different trends among 4 experimental seasons, when the N reduced 20% applied, the DTPA-Cd contents were lowest among 3 out of four experimental seasons, except for that of C2-wheat, where N2 treatments ranked the second lower contents. For most seasons, Cd contents in straws were higher than soils and lowest in grains, and S2N2 treatment performed an intermediate value among all treatments. Furthermore, our study demonstrated that S2 or N2 treatments or S2N2 reduced the potential risk of plant diseases and pests with lower disease index, disease cluster rate. Notably, the relative outbreak of pests was remarkably suppressed under S2 treatments, especially S2N2. Thus, these findings demonstrated that in wheat-rice rotation reducing 20% N fertilization with 50% straw returning may be a win-win practice in this region for the equilibrium between agricultural productivity, quality and low Cd polluted risk.
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Affiliation(s)
- Anqi Shan
- Key Laboratory of Environmental Remediation and Ecological Health, Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, 310058, Hangzhou, China
| | - Jianqing Pan
- Technical Extension Station of Soil Fertilizer and Rural Energy, Changxing, Huzhou, PR China
| | - Kyong Ju Kang
- Key Laboratory of Environmental Remediation and Ecological Health, Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, 310058, Hangzhou, China
| | - Minghui Pan
- Key Laboratory of Environmental Remediation and Ecological Health, Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, 310058, Hangzhou, China
| | - Gang Wang
- Key Laboratory of Environmental Remediation and Ecological Health, Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, 310058, Hangzhou, China
| | - Mei Wang
- Key Laboratory of Environmental Remediation and Ecological Health, Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, 310058, Hangzhou, China
| | - Zhenli He
- Indian River Research and Education Center, Institute of Food and Agricultural Science, University of Florida, Fort Pierce, FL, 34945, USA
| | - Xiaoe Yang
- Key Laboratory of Environmental Remediation and Ecological Health, Ministry of Education, College of Environmental and Resource Sciences, Zhejiang University, 310058, Hangzhou, China.
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Cytokinin Inhibits Fungal Development and Virulence by Targeting the Cytoskeleton and Cellular Trafficking. mBio 2021; 12:e0306820. [PMID: 34663100 PMCID: PMC8524340 DOI: 10.1128/mbio.03068-20] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Cytokinin (CK) is an important plant developmental regulator, having activities in many aspects of plant life and response to the environment. CKs are involved in diverse processes in the plant, including stem cell maintenance, vascular differentiation, growth and branching of roots and shoots, leaf senescence, nutrient balance, and stress tolerance. In some cases, phytopathogens secrete CKs. It has been suggested that to achieve pathogenesis in the host, CK-secreting biotrophs manipulate CK signaling to regulate the host cell cycle and nutrient allocation. CK is known to induce host plant resistance to several classes of phytopathogens from a few works, with induced host immunity via salicylic acid signaling suggested to be the prevalent mechanism for this host resistance. Here, we show that CK directly inhibits the growth, development, and virulence of fungal phytopathogens. Focusing on Botrytis cinerea (Bc), we demonstrate that various aspects of fungal development can be reversibly inhibited by CK. We also found that CK affects both budding and fission yeast in a similar manner. Investigating the mechanism by which CK influences fungal development, we conducted RNA next-generation sequencing (RNA-NGS) on mock- and CK-treated B. cinerea samples, finding that CK alters the cell cycle, cytoskeleton, and endocytosis. Cell biology experiments demonstrated that CK affects cytoskeleton components and cellular trafficking in Bc, lowering endocytic rates and endomembrane compartment sizes, likely leading to reduced growth rates and arrested developmental programs. Mutant analyses in yeast confirmed that the endocytic pathway is altered by CK. Our work uncovers a remarkably conserved role for a plant growth hormone in fungal biology, suggesting that pathogen-host interactions resulted in fascinating molecular adaptations on fundamental processes in eukaryotic biology.
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Romanazzi G, Mancini V, Foglia R, Marcolini D, Kavari M, Piancatelli S. Use of Chitosan and Other Natural Compounds Alone or in Different Strategies with Copper Hydroxide for Control of Grapevine Downy Mildew. PLANT DISEASE 2021; 105:3261-3268. [PMID: 33206016 DOI: 10.1094/pdis-06-20-1268-re] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Grapevine downy mildew (GDM) is one of the most serious diseases of grapevines. Limitations to the use of copper-based products in organic agriculture according to the European Union (EU) regulation EU/2002/473 and the later EU Commission implementing regulation 2018/1981 have promoted a search for alternatives. This 5-year field trial evaluated the effectiveness of several strategies against GDM using different chitosan-based formulations and application rates in comparison with other natural compounds applied individually or with copper hydroxide. Trials were performed in commercial vineyards with different environmental conditions and grapevine cultivars. For the natural compounds applied as individual treatments, a 0.5%/0.8% chitosan formulation provided the best protection against GDM; the other compounds and formulations were less effective. When copper hydroxide use was halved by combining it with the natural compounds according to three different strategies, the GDM incidence, severity, and McKinney index were reduced, particularly for copper hydroxide applied in combination with the 0.5%/0.8% chitosan formulation. The 0.5%/0.8% chitosan formulation alone and with copper hydroxide provided good protection against GDM during both high-pressure and low-pressure disease seasons. Therefore, chitosan represents a good alternative to copper formulations for the control of GDM and both organic and integrated disease management.
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Affiliation(s)
- Gianfranco Romanazzi
- Department of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, Via Brecce Bianche, 60131 Ancona, Italy
| | - Valeria Mancini
- Department of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, Via Brecce Bianche, 60131 Ancona, Italy
| | - Renzo Foglia
- Department of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, Via Brecce Bianche, 60131 Ancona, Italy
| | - Diego Marcolini
- Department of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, Via Brecce Bianche, 60131 Ancona, Italy
| | | | - Simone Piancatelli
- Department of Agricultural, Food and Environmental Sciences, Marche Polytechnic University, Via Brecce Bianche, 60131 Ancona, Italy
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Parizad S, Bera S. The effect of organic farming on water reusability, sustainable ecosystem, and food toxicity. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021:10.1007/s11356-021-15258-7. [PMID: 34235694 DOI: 10.1007/s11356-021-15258-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Accepted: 06/28/2021] [Indexed: 05/12/2023]
Abstract
Water is a fundamental necessity for people's well-being and the ecosystem's sustainability; however, its toxicity due to agrochemicals usage for food production leads to the deterioration of water quality. The poor water quality diminishes its reusability, thus limiting efficient water usage. Organic farming is one of the best ways that does not only reduce the deterioration of water quality but also decrease food toxicity. In organic farming, the crop is grown with no/less chemical usage. Besides, organic farming maintains biodiversity and reduces the anthropogenic footprint on soil, air, water, wildlife, and especially on the farming communities. Fields that are organically managed continuously for years have fewer pest populations and were attributed to increased biodiversity and abundance of multi-trophic interactions as well as to changes in plant metabolites. Fewer insect pests (pathogen vectors), in turn, would result in fewer crop diseases and increase crop production. This review highlights that organic farming may play a critical role in the reduction of pests and pathogens, which eventually would reduce the need for chemical reagents to protect crops, improving yield quality and water reusability.
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Affiliation(s)
- Shirin Parizad
- Department of Research and Development (Plant Probiotics), Nature Biotechnology Company (Biorun), Karaj, Iran.
| | - Sayanta Bera
- Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD, 20742, USA.
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Basit A, Farhan M, Mo WD, Ding HX, Ikram M, Farooq T, Ahmed S, Yang ZF, Wang Y, Hashem M, Alamri S, Amjad Bashir M, El-Zohri M. Enhancement of resistance by poultry manure and plant hormones (salicylic acid & citric acid) against tobacco mosaic virus. Saudi J Biol Sci 2021; 28:3526-3533. [PMID: 34121895 PMCID: PMC8176140 DOI: 10.1016/j.sjbs.2021.03.025] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Revised: 03/03/2021] [Accepted: 03/08/2021] [Indexed: 11/24/2022] Open
Abstract
Virus is the most menacing factor for plant, which causes enormous economic losses in agriculture worldwide. Tobacco mosaic virus is most hazardous virus among the plants that can spread through biological and non-biological sources. TMV is ancient virus that causes huge economic losses to pepper cucumber ornamental crops and tobacco. It can be controlled by reducing the population of vector through pesticide application. However, the rapid usage of synthetic chemicals causes environmental pollution and destroys our ecosystem. Consequently, different approaches just like natural derivatives should be adopted for the environmental friendly management for TMV. This in vitro study demonstrated the potential role of natural metabolites such as poultry manure and plant extracts such as salicylic acid and citric acid for the control of TMV. Two different concentrations of poultry manure 60G and 30G were used. Poultry manure was mixed with the soil at the time of sowing. Disease severity was minimum at maximum concentration as compared to the control. Meanwhile, two different concentrations of salicylic acid and citric acid 60% and 90% were applied by foliar sprayer after three-leaf stages. Disease severity was observed after 5, 10, 15, 20, 25, and 30 days after disease inoculation. Here also maximum concentration showed the minimum disease severity and higher concentration of both animal and plants extracts were used for following experiment. Quantitative real-time PCR (RT-qPCR) results demonstrated that different plant defense-related genes such as PR1a, PAL, PR5, NPR1, PRIb, and PDF1.2 were up-regulated. Furthermore, applications of each treatment-induced systemic resistance against a wide range of pathogen including TMV and fungal pathogen Botrytis cinerea.
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Affiliation(s)
- Abdul Basit
- Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang 550025, China
| | - Muhammad Farhan
- Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang 550025, China
| | - Wei-Di Mo
- Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang 550025, China
| | - Hai-Xia Ding
- Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang 550025, China
| | - Muhammad Ikram
- Statistical Genomic Lab, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, China
| | - Tariq Farooq
- Key Laboratory of Horticultural Plant Biology, College of Horticulture and Forestry Sciences Huazhong Agricultural University Wuhan 430070, China
| | - Sohail Ahmed
- Department of Entomology, University of Agriculture Faisalabad, Pakistan
| | - Zai-Fu Yang
- Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang 550025, China
| | - Yong Wang
- Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang 550025, China
| | - Mohamed Hashem
- King Khalid University, College of Science, Department of Biology, Abha 61413, Saudi Arabia
- Assiut University, Faculty of Science, Botany and Microbiology Department, Assiut 71516, Egypt
| | - Saad Alamri
- King Khalid University, College of Science, Department of Biology, Abha 61413, Saudi Arabia
| | - Muhammad Amjad Bashir
- Department of Plant Protection, Faculty of Agricultural Sciences, Ghazi University Dera Ghazi Khan Punjab, Pakistan
| | - Manal El-Zohri
- Assiut University, Faculty of Science, Botany and Microbiology Department, Assiut 71516, Egypt
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Abdelhafez AA, Eid KE, El-Abeid SE, Abbas MHH, Ahmed N, Mansour RRME, Zou G, Iqbal J, Fahad S, Elkelish A, Alamri S, Siddiqui MH, Mohamed I. Application of soil biofertilizers to a clayey soil contaminated with Sclerotium rolfsii can promote production, protection and nutritive status of Phaseolus vulgaris. CHEMOSPHERE 2021; 271:129321. [PMID: 33434829 DOI: 10.1016/j.chemosphere.2020.129321] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Revised: 12/10/2020] [Accepted: 12/11/2020] [Indexed: 06/12/2023]
Abstract
Sclerotium rolfsii is a soil-borne fungus that causes big losses in productivity of various plant species including Phaseolus vulgaris L. The objectives of this study were to (1) evaluate the impacts of Sclerotium rolfsii on growth and production of common bean plants, (2) determine the effects of Sclerotium rolfsii on nutritive contents of beans, and (3) test the efficacy of bio-inoculants on suppressing plant infection with Sclerotium rolfsii. To fulfill these objectives, we used a coupled pot and field experimental approaches during two growing seasons. Common beans were inoculated with either arbuscular mycorrhizal fungi (Claroideoglomus etunicatum), Saccharomyces cerevisiae, or Trichoderma viride solely or in different combinations. Non-inoculated plants and fungicide treated ones were considered as reference treatments. Throughout these experiments, minimal amounts of rock phosphate were added during soil preparation for bio-inoculated treatments, while the non-inoculated reference treatments received a full dose of P as calcium superphosphate. Results revealed that all tested bioinoculants significantly raised the activities of plant defense enzymes i.e. chitinase, peroxidase and polyphenoloxidase as compared to non-inoculated control. Likewise, pre-, post- and plant survival percentages significantly increased due to these bio-inoculations. Increased survival percentages were attributed to the concurrent increases in uptake of N, P and Zn nutrients by plants treated with bioinoculants. In this concern, plant nutrients uptake was higher in combined than single bio-inoculant treatments. Moreover, the uptake values of plant nutrients owing to the combined bio-inoculants were higher than the corresponding ones achieved due to fungicide treatment. In conclusion, application of the tested bio-inoculants, especially the combined ones can be considered an eco-friendly approach that not only enhances plants resistance against infection with Sclerotium rolfsii but also improves plant nutritive status.
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Affiliation(s)
- Ahmed A Abdelhafez
- Eco-environmental Protection Research Institute, Shanghai Academy of Agricultural Science (SAAS), China; New Valley University, Faculty of Agriculture, Soils and Water Department, Egypt; National Committee of Soil Science, Academy of Scientific Research and Technology, Egypt
| | - Khaled E Eid
- Plant Pathology Department, Faculty of Agriculture, Benha University Egypt
| | - Sozan E El-Abeid
- Plant Pathology Research Institute, Agriculture Research Centre (ARC), Giza, Egypt
| | - Mohamed H H Abbas
- Soils and Water Department, Faculty of Agriculture, Benha University, Egypt
| | - Nevin Ahmed
- Plant Protection Department, Faculty of Agriculture, Benha University, Egypt
| | | | - Guoyan Zou
- Eco-environmental Protection Research Institute, Shanghai Academy of Agricultural Science (SAAS), China
| | - Javed Iqbal
- Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, 68583, USA
| | - Shah Fahad
- Hainan Key Laboratory for Sustainable Utilization of Tropical Bioresource, College of Tropical Crops, Hainan University, Haikou, 570228, China; Department of Agronomy, The University of Haripur, Haripur, 22620, Pakistan.
| | - Amr Elkelish
- Botany Department, Faculty of Science, Suze Canal University, Ismailia, Egypt
| | - Saud Alamri
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 2455, Saudi Arabia
| | - Manzer H Siddiqui
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 2455, Saudi Arabia
| | - Ibrahim Mohamed
- Soils and Water Department, Faculty of Agriculture, Benha University, Egypt.
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Ma W, Yang Z, Hou S, Ma Q, Liang L, Wang G, Liang C, Zhao T. Effects of Living Cover on the Soil Microbial Communities and Ecosystem Functions of Hazelnut Orchards. FRONTIERS IN PLANT SCIENCE 2021; 12:652493. [PMID: 33841481 PMCID: PMC8033216 DOI: 10.3389/fpls.2021.652493] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Accepted: 02/26/2021] [Indexed: 06/12/2023]
Abstract
Living cover is an important management measure for orchards in China, and has certain influences on soil properties, microorganisms, and the micro-ecological environment. However, there are few studies on the effects of living cover on the soil changes in hazelnut orchards. In this study, we compared the soils of living cover treatments with Vulpia myuros and the soils of no cover treatments, and analyzed the observed changes in soil properties, microorganisms, and microbial functions by using high-throughput ITS rDNA and 16S rRNA gene Illumina sequencing. The results demonstrated that the total organic carbon content in the 20-40 cm deep soils under the living cover treatments increased by 32.87 and 14.82% in May and July, respectively, compared with those under the no cover treatments. The living cover treatment with V. myuros also significantly increased the contents of total phosphorus (TP), total nitrogen (TN), available phosphorus (AP), and available potassium (AK) in the soil samples. Moreover, the influence of seasons was not as significant as that of soil depth. The living cover treatment also significantly improved the soil enzyme activity levels. The results demonstrated that Ascomycota, Mortierellomycota and Basidiomycota were the dominant fungal phyla in all samples, while Proteobacteria, Actinobacteria, Acidobacteria, Firmicutes, and Chloroflexi were the dominant bacterial phyla, but the different treatments impacted the compositions of fungal and bacterial communities. Principal component analysis (PCA) showed that living cover with V. myuros significantly changed the soil fungal community structures whereas the bacterial community structures may be more sensitive to seasonal changes. At the microbial functional level, the living cover treatment increased the fungal operational taxonomic units (OTUs) of symbiotrophs and decreased that of pathotrophs. According to this study, we believe that the application of a living cover with V. myuros has a favorable regulating influence on soil properties, microbial communities and microbial function. This treatment can also reduce the use of herbicides, reduce the cost of orchard management, and store more carbon underground to achieve sustainable intensification of production in hazelnut orchards, so it can be considered as a management measure for hazelnut orchards.
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Affiliation(s)
- Wenxu Ma
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
- Hazelnut Engineering and Technical Research Center of the State Forestry and Grassland Administration, Beijing, China
- National Hazelnut Industry Innovation Alliance, Beijing, China
| | - Zhen Yang
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
- Hazelnut Engineering and Technical Research Center of the State Forestry and Grassland Administration, Beijing, China
- National Hazelnut Industry Innovation Alliance, Beijing, China
| | - Sihao Hou
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
- Hazelnut Engineering and Technical Research Center of the State Forestry and Grassland Administration, Beijing, China
- National Hazelnut Industry Innovation Alliance, Beijing, China
| | - Qinghua Ma
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
- Hazelnut Engineering and Technical Research Center of the State Forestry and Grassland Administration, Beijing, China
- National Hazelnut Industry Innovation Alliance, Beijing, China
| | - Lisong Liang
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
- Hazelnut Engineering and Technical Research Center of the State Forestry and Grassland Administration, Beijing, China
- National Hazelnut Industry Innovation Alliance, Beijing, China
| | - Guixi Wang
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
- Hazelnut Engineering and Technical Research Center of the State Forestry and Grassland Administration, Beijing, China
- National Hazelnut Industry Innovation Alliance, Beijing, China
| | - Chunli Liang
- Liaoning Agricultural Technical College, Yingkou, China
| | - Tiantian Zhao
- Key Laboratory of Tree Breeding and Cultivation of the State Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
- Hazelnut Engineering and Technical Research Center of the State Forestry and Grassland Administration, Beijing, China
- National Hazelnut Industry Innovation Alliance, Beijing, China
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30
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Weng S, Hu X, Wang J, Tang L, Li P, Zheng S, Zheng L, Huang L, Xin Z. Advanced Application of Raman Spectroscopy and Surface-Enhanced Raman Spectroscopy in Plant Disease Diagnostics: A Review. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2021; 69:2950-2964. [PMID: 33677962 DOI: 10.1021/acs.jafc.0c07205] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Plant diseases result in 20-40% of agricultural loss every year worldwide. Timely detection of plant diseases can effectively prevent the development and spread of diseases and ensure the agricultural yield. High-throughput and rapid methods are in great demand. This review investigates the advanced application of Raman spectroscopy (RS) and surface-enhanced Raman spectroscopy (SERS) in the detection of plant diseases. The determination of bacterial diseases and stress-induced diseases, fungal diseases, viral diseases, pests in beans, and mycotoxins related to plant diseases using RS and SERS are discussed in detail. Then, biomarkers for RS and SERS detection are analyzed with regard to plant disease diagnosis. Finally, the advantages and challenges are further illustrated. Additionally, potential alternatives are proposed for the challenges. The review is expected to provide a reference and guidance for the use of RS and SERS in plant disease diagnostics.
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Affiliation(s)
- Shizhuang Weng
- National Engineering Research Center for Agro-Ecological Big Data Analysis & Application, Anhui University, 111 Jiulong Road, Hefei 230601, People's Republic of China
| | - Xujin Hu
- National Engineering Research Center for Agro-Ecological Big Data Analysis & Application, Anhui University, 111 Jiulong Road, Hefei 230601, People's Republic of China
| | - Jinghong Wang
- National Engineering Research Center for Agro-Ecological Big Data Analysis & Application, Anhui University, 111 Jiulong Road, Hefei 230601, People's Republic of China
| | - Le Tang
- National Engineering Research Center for Agro-Ecological Big Data Analysis & Application, Anhui University, 111 Jiulong Road, Hefei 230601, People's Republic of China
| | - Pan Li
- Hefei Institute of Physical Science, Chinese Academy of Sciences, 350 Shushanhu Road, Hefei 230031, People's Republic of China
| | - Shouguo Zheng
- Hefei Institute of Physical Science, Chinese Academy of Sciences, 350 Shushanhu Road, Hefei 230031, People's Republic of China
| | - Ling Zheng
- National Engineering Research Center for Agro-Ecological Big Data Analysis & Application, Anhui University, 111 Jiulong Road, Hefei 230601, People's Republic of China
| | - Linsheng Huang
- National Engineering Research Center for Agro-Ecological Big Data Analysis & Application, Anhui University, 111 Jiulong Road, Hefei 230601, People's Republic of China
| | - Zhenghua Xin
- College of Information Engineering, Suzhou University, 1769 Xuefu Avenue, Suzhou, People's Republic of China
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31
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Benvenuti S, Mazzoncini M. The Biodiversity of Edible Flowers: Discovering New Tastes and New Health Benefits. FRONTIERS IN PLANT SCIENCE 2021; 11:569499. [PMID: 33692813 PMCID: PMC7937964 DOI: 10.3389/fpls.2020.569499] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Accepted: 10/28/2020] [Indexed: 05/27/2023]
Abstract
Floriculture and horticulture have always been two parallel and very distinct agronomic realities. Floriculture is concerned with meeting the ornamental needs of our urban ecosystems, while horticulture is based on meeting food requirements. These two activities have now converged toward a food chain where flowers are conceived of as a sort of "new vegetable" and one of the most promising novelties to satisfy the growing need for food innovation both in terms of an organoleptic and nutraceutical profile. This novelty has rapidly evolved, especially following the growing scientific evidence of the human health benefits of flowers used as food. The typically high pigment concentration of the corollas (especially flavonoids and carotenoids), which have evolved to chromatically attract pollinators, indicates a marked nutraceutical activity especially in terms of antioxidant power. In this review, we first attempted to explore which species are most promising and which should be avoided due to real or suspected toxicity problems. The nutraceutical virtues were therefore highlighted trying to focus attention on those "functional phytochemicals" capable of counteracting some specific human pathologies. Furthermore, the organoleptic profile of edible flowers was investigated since this is one of the least known aspects. The cropping systems suitable for their cultivation were therefore hypothesized and finally the criticalities of edible flowers were addressed in terms of shelf life and marketing opportunities.
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Neher DA, Limoges MA, Weicht TR, Sharma M, Millner PD, Donnelly C. Bacterial Community Dynamics Distinguish Poultry Compost from Dairy Compost and Non-Amended Soils Planted with Spinach. Microorganisms 2020; 8:microorganisms8101601. [PMID: 33080970 PMCID: PMC7603165 DOI: 10.3390/microorganisms8101601] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Revised: 10/13/2020] [Accepted: 10/15/2020] [Indexed: 02/07/2023] Open
Abstract
The aim of this study was to determine whether and how poultry litter compost and dairy manure compost alter the microbial communities within field soils planted with spinach. In three successive years, separate experimental plots on two fields received randomly assigned compost treatments varying in animal origin: dairy manure (DMC), poultry litter (PLC), or neither (NoC). The composition and function of bacterial and fungal communities were characterized by the amplicon sequencing of marker genes and by the ecoenzyme activity, respectively. The temporal autocorrelation within and among years was adjusted by principal response curves (PRC) to analyze the effect of compost on community composition among treatments. Bacteria in the phylum Bacteriodetes, classes Flavobacteriia and Spingobacteriales (Fluviicola, Flavobacteriia, and Pedobacter), were two to four times more abundant in soils amended with PLC than DMC or NoC consistently among fields and years. Fungi in the phylum Ascomycota were relatively abundant, but their composition was field-specific and without treatment differences. The ecoenzyme data verify that the effects of PLC and DMC on soil communities are based on their microbial composition and not a response to the C source or nutrient content of the compost.
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Affiliation(s)
- Deborah A. Neher
- Department of Plant and Soil Science, University of Vermont, Jeffords Hall, 63 Carrigan Drive, Burlington, VT 05405, USA;
- Correspondence: (D.A.N.); (C.D.); Tel.: +01-802-656-0474 (D.A.N.)
| | - Marie A. Limoges
- Department of Nutrition and Food Sciences, University of Vermont, Marsh Life Science, 109 Carrigan Drive, Burlington, VT 05405, USA;
| | - Thomas R. Weicht
- Department of Plant and Soil Science, University of Vermont, Jeffords Hall, 63 Carrigan Drive, Burlington, VT 05405, USA;
| | - Manan Sharma
- United States Department of Agriculture Research Service, 10300 Baltimore Ave, Beltsville, MD 20705, USA; (M.S.); (P.D.M.)
| | - Patricia D. Millner
- United States Department of Agriculture Research Service, 10300 Baltimore Ave, Beltsville, MD 20705, USA; (M.S.); (P.D.M.)
| | - Catherine Donnelly
- Department of Nutrition and Food Sciences, University of Vermont, Marsh Life Science, 109 Carrigan Drive, Burlington, VT 05405, USA;
- Correspondence: (D.A.N.); (C.D.); Tel.: +01-802-656-0474 (D.A.N.)
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33
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Crandall SG, Gold KM, Jiménez-Gasco MDM, Filgueiras CC, Willett DS. A multi-omics approach to solving problems in plant disease ecology. PLoS One 2020; 15:e0237975. [PMID: 32960892 PMCID: PMC7508392 DOI: 10.1371/journal.pone.0237975] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Accepted: 08/04/2020] [Indexed: 12/11/2022] Open
Abstract
The swift rise of omics-approaches allows for investigating microbial diversity and plant-microbe interactions across diverse ecological communities and spatio-temporal scales. The environment, however, is rapidly changing. The introduction of invasive species and the effects of climate change have particular impact on emerging plant diseases and managing current epidemics. It is critical, therefore, to take a holistic approach to understand how and why pathogenesis occurs in order to effectively manage for diseases given the synergies of changing environmental conditions. A multi-omics approach allows for a detailed picture of plant-microbial interactions and can ultimately allow us to build predictive models for how microbes and plants will respond to stress under environmental change. This article is designed as a primer for those interested in integrating -omic approaches into their plant disease research. We review -omics technologies salient to pathology including metabolomics, genomics, metagenomics, volatilomics, and spectranomics, and present cases where multi-omics have been successfully used for plant disease ecology. We then discuss additional limitations and pitfalls to be wary of prior to conducting an integrated research project as well as provide information about promising future directions.
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Affiliation(s)
- Sharifa G. Crandall
- Department of Plant Pathology and Environmental Microbiology, The Pennsylvania State University, University Park, PA, United States of America
| | - Kaitlin M. Gold
- Plant Pathology & Plant Microbe Biology Section, Cornell AgriTech, Cornell University, Geneva, NY, United States of America
| | - María del Mar Jiménez-Gasco
- Department of Plant Pathology and Environmental Microbiology, The Pennsylvania State University, University Park, PA, United States of America
| | - Camila C. Filgueiras
- Applied Chemical Ecology Technology, Cornell AgriTech, Cornell University, Geneva, NY, United States of America
| | - Denis S. Willett
- Applied Chemical Ecology Technology, Cornell AgriTech, Cornell University, Geneva, NY, United States of America
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Goss EM, Kendig AE, Adhikari A, Lane B, Kortessis N, Holt RD, Clay K, Harmon PF, Flory SL. Disease in Invasive Plant Populations. ANNUAL REVIEW OF PHYTOPATHOLOGY 2020; 58:97-117. [PMID: 32516034 DOI: 10.1146/annurev-phyto-010820-012757] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Non-native invasive plants can establish in natural areas, where they can be ecologically damaging and costly to manage. Like cultivated plants, invasive plants can experience a relatively disease-free period upon introduction and accumulate pathogens over time. Diseases of invasive plant populations are infrequently studied compared to diseases of agriculture, forestry, and even native plant populations. We evaluated similarities and differences in the processes that are likely to affect pathogen accumulation and disease in invasive plants compared to cultivated plants, which are the dominant focus of the field of plant pathology. Invasive plants experience more genetic, biotic, and abiotic variation across space and over time than cultivated plants, which is expected to stabilize the ecological and evolutionary dynamics of interactions with pathogens and possibly weaken the efficacy of infectious disease in their control. Although disease is expected to be context dependent, the widespread distribution of invasive plants makes them important pathogen reservoirs. Research on invasive plant diseases can both protect crops and help manage invasive plant populations.
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Affiliation(s)
- Erica M Goss
- Department of Plant Pathology and Emerging Pathogens Institute, University of Florida, Gainesville, Florida 32611, USA;
| | - Amy E Kendig
- Agronomy Department, University of Florida, Gainesville, Florida 32611, USA
| | - Ashish Adhikari
- Department of Plant Pathology, University of Florida, Gainesville, Florida 32611, USA
| | - Brett Lane
- Department of Plant Pathology, University of Florida, Gainesville, Florida 32611, USA
| | - Nicholas Kortessis
- Department of Biology, University of Florida, Gainesville, Florida 32611, USA
| | - Robert D Holt
- Department of Biology, University of Florida, Gainesville, Florida 32611, USA
| | - Keith Clay
- Department of Ecology and Evolutionary Biology, Tulane University, New Orleans, Louisiana 70118, USA
| | - Philip F Harmon
- Department of Plant Pathology, University of Florida, Gainesville, Florida 32611, USA
| | - S Luke Flory
- Agronomy Department, University of Florida, Gainesville, Florida 32611, USA
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35
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Chen C, Han H, Xu T, Lv Y, Hu K, Li XX, Qiao Y, Ding GC, Li J. Comparison of the Total, Diazotrophic and Ammonia-Oxidizing Bacterial Communities Between Under Organic and Conventional Greenhouse Farming. Front Microbiol 2020; 11:1861. [PMID: 32903338 PMCID: PMC7434936 DOI: 10.3389/fmicb.2020.01861] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2019] [Accepted: 07/15/2020] [Indexed: 12/15/2022] Open
Abstract
Organic greenhouse farming is an innovative system that may maintain a high yield and healthy agroecosystem. There have been no rigorous studies on the comparison of total and nitrogen-cycling bacterial community in vegetable soils between organic and conventional farming management at large scale. A survey of bacterial community and nitrogen cycles from soils under organic and conventional greenhouse farming was performed at 30 sites, covering seven soil types with 4 to 18 years of organic farming history. Communities of the total, diazotrophs and ammonia-oxidizing bacteria were studied with high-throughput sequencing of the 16S rRNA, nifH and amoA genes, respectively. Organic greenhouse farming did not influence alpha diversities. Beta diversities among the total (26/30) and diazotrophic (17/19) bacteria differed between farming systems, but compositional differences in ammonia-oxidizing bacteria between the two farming systems were only detected at 6 sites. Despite the effects of farming system on most bacterial genera were varied across different sites, organic greenhouse farming persistently selected for a few genera, possibly for the biodegradation of organic carbon with high molecular weight (Hyphomicrobium, Rubinisphaera, Aciditerrimonas, Planifilum, Phaselicystis, and Ohtaekwangia), but against putative ammonia oxidizing (Nitrosospira, Nitrosopumilus) and diazotrophic (Bradyrhizobium) bacterial genera, as determined by 16S rRNA analysis. Diazotrophic bacteria affiliated with nifH cluster 1J were preferentially associated with organic greenhouse farming, in contrast to Paenibacillus borealis. In summary, this study provides insights into the complex effects of organic greenhouse farming on the total, diazotrophic and ammonia oxidizing bacterial communities across different environmental context.
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Affiliation(s)
- Chen Chen
- Beijing Key Laboratory of Biodiversity and Organic Farming, College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Hui Han
- Beijing Key Laboratory of Biodiversity and Organic Farming, College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Ting Xu
- Beijing Key Laboratory of Biodiversity and Organic Farming, College of Resources and Environmental Sciences, China Agricultural University, Beijing, China.,Organic Recycling Institute (Suzhou) of China Agricultural University, Suzhou ViCheck Biotechnology Co., Ltd., Suzhou, China
| | - Yizhong Lv
- Beijing Key Laboratory of Biodiversity and Organic Farming, College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Kelin Hu
- Beijing Key Laboratory of Biodiversity and Organic Farming, College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Xue Xian Li
- Beijing Key Laboratory of Biodiversity and Organic Farming, College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Yuhui Qiao
- Beijing Key Laboratory of Biodiversity and Organic Farming, College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Guo-Chun Ding
- Beijing Key Laboratory of Biodiversity and Organic Farming, College of Resources and Environmental Sciences, China Agricultural University, Beijing, China.,Organic Recycling Institute (Suzhou) of China Agricultural University, Suzhou ViCheck Biotechnology Co., Ltd., Suzhou, China
| | - Ji Li
- Beijing Key Laboratory of Biodiversity and Organic Farming, College of Resources and Environmental Sciences, China Agricultural University, Beijing, China.,Organic Recycling Institute (Suzhou) of China Agricultural University, Suzhou ViCheck Biotechnology Co., Ltd., Suzhou, China
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Composted Chicken Manure for Anaerobic Soil Disinfestation Increased the Strawberry Yield and Shifted the Soil Microbial Communities. SUSTAINABILITY 2020. [DOI: 10.3390/su12166313] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Anaerobic soil disinfestation (ASD), as a bio-fumigation technology, has been developed to control soil-borne pests. There is increasing evidence showing that carbon sources and cover tarps play an important role in the ASD suppression of soil-borne pests, but little is known about the effect of composted chicken manure (CCM) and totally impermeable films (TIF) against soil-borne pests in the strawberry production system. In experiments, the colonies of Fusarium spp. and Phytophthora spp., which are recognized to cause strawberry soil-borne diseases, decreased significantly after ASD. The soil promoted a significant increase in ammonium nitrogen, nitrate-nitrogen and organic matter, but a decrease in oxidation-reduction potential after ASD. Besides, the strawberry plant height, stem thickness and yield were significantly higher than in the non-amended soil. Compared to the untreated control, ASD, both at 6 and 12 ton/ha of CCM, significantly (p = 0.05) increased strawberry marketable yield and income. The economic benefit could be due to the suppression of soil-borne diseases and the improvement of soil nutrition. The soil bacterial and fungal diversity and richness increased after soil fumigation. The increased presence of biological control agents led to the suppression of soil-borne pathogens. In summary, ASD with CCM amendments could be applied in pre-plant fumigation to control strawberry soil-borne pests, strengthen soil fertility, improve crop yield and increase growers’ income.
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37
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Control of Fusarium wilt by wheat straw is associated with microbial network changes in watermelon rhizosphere. Sci Rep 2020; 10:12736. [PMID: 32728175 PMCID: PMC7391731 DOI: 10.1038/s41598-020-69623-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2020] [Accepted: 06/28/2020] [Indexed: 11/17/2022] Open
Abstract
Straw return is an effective strategy to alleviate soil-borne diseases. Though watermelon Fusarium wilt is a severe soil-borne disease, the effect of wheat straw on the disease remains unclear. Thus, we investigated the effects of wheat straw on soil bacterial and fungal communities by adding wheat straw to consecutive watermelon soil in the greenhouse condition. The microbiome changes were further investigated using network analysis based on 16S rDNA and internal transcribed spacer deep sequencing. Wheat straw addition increased the fungal community diversity, whereas the bacterial diversity was not affected. Compared to the control group, the relative abundance of some bacteria, including Actinobacteria, Chloroflexi, and Saccharibacteria, was increased with wheat straw addition. For fungi, the relative abundance of Fusarium was decreased with wheat straw addition. Microbial network analysis demonstrated that the fungal community has a more complex connection than the bacterial community. In addition, redundancy analysis indicated that the Fusarium genera were significantly related to the disease index. Taken together, the addition of wheat straw might affect the microbial community through increasing the relative abundance of phylum Actinobacteria, decreasing the relative abundance of Fusarium, and increasing the fungal network complexity to enhance the defense of watermelon against Fusarium wilt disease.
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38
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Gu Z, Wang M, Wang Y, Zhu L, Mur LAJ, Hu J, Guo S. Nitrate Stabilizes the Rhizospheric Fungal Community to Suppress Fusarium Wilt Disease in Cucumber. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2020; 33:590-599. [PMID: 32073377 DOI: 10.1094/mpmi-07-19-0198-r] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Nitrogen forms can regulate soil-borne Fusarium wilt suppression, but the related mechanisms are largely unknown, especially possible action via the rhizospheric microbial community. Soil analysis, MiSeq high-throughput sequencing analysis, community diversity, and network analysis were used to characterize the impact of different nitrogen forms (nitrate and ammonium) on rhizospheric fungal communities and the contribution of nitrate to the suppression to Fusarium oxysporum f. sp. cucumerinum compared with ammonium. Nitrate-grown cucumber showed a lower disease index and F. oxysporum f. sp. cucumerinum abundance in the rhizosphere. In comparisons with ammonium nutrients, nitrate-fed plants maintained a higher soil rhizosphere pH, microbial biomass carbon content, microbial biomass nitrogen content, as well as fungal community richness and diversity following F. oxysporum f. sp. cucumerinum incubation. All these factors were negatively related with disease index. Network analysis showed fewer nodes and edges in the ammonium treatments compared with nitrate treatments. The relative abundance of Pathotroph-Saprotroph, Pathotroph-Saprotroph-Symbiotroph, and Saprotroph fungi explained 82% of the variability of rhizosphere F. oxysporum f. sp. cucumerinum abundance. In conclusion, after pathogen inoculation under nitrate nutrition, the less-affected microbial composition, community diversity, and community internal relations, which resulted from the more diverse and robust microbial population, potentially contributed to greater Fusarium wilt suppression.
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Affiliation(s)
- Zechen Gu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Min Wang
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Ying Wang
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Linxing Zhu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Luis Alejandro Jose Mur
- Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, Aberystwyth SY23 3DA, U.K
| | - Jun Hu
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, Jiangsu, China
| | - Shiwei Guo
- Jiangsu Provincial Key Lab of Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center of Solid Organic Wastes, Educational Ministry Engineering Center of Resource-saving fertilizers, Nanjing Agricultural University, Nanjing, Jiangsu, China
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39
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Degrune F, Boeraeve F, Dufrêne M, Cornélis JT, Frey B, Hartmann M. The Pedological Context Modulates the Response of Soil Microbial Communities to Agroecological Management. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00261] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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40
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Li H, Cai X, Gong J, Xu T, Ding GC, Li J. Long-Term Organic Farming Manipulated Rhizospheric Microbiome and Bacillus Antagonism Against Pepper Blight ( Phytophthora capsici). Front Microbiol 2019; 10:342. [PMID: 30873141 PMCID: PMC6401385 DOI: 10.3389/fmicb.2019.00342] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2018] [Accepted: 02/08/2019] [Indexed: 12/12/2022] Open
Abstract
Soil-borne diseases are often less severe in organic farms, possibly because of the recruitment of beneficial microorganisms by crops. Here, the suppressiveness of organic, integrated, and conventionally managed soils to pepper blight (Phytophthora capsici) was studied in growth chamber experiments. Disease incidence was 41.3 and 34.1% lower in the soil from an organic farming system than in either the soil from the integrated or from the conventional farming systems, respectively. Beta-diversity of rhizospheric microbial communities differed among treatments, with enrichment of Bacillus, Sporosarcina, Acidobacteria Gp5, Gp6, Gp22, and Ignavibacterium by the organic soil. Cultivation-dependent analysis indicated that 50.3% of in vitro antagonists of P. capsici isolated from the rhizosphere of healthy peppers were affiliated to Bacillus. An integration of in vitro antagonists and bacterial diversity analyses indicated that Bacillus antagonists were higher in the rhizosphere of pepper treated by the organic soil. A microbial consortium of 18 in vitro Bacillus antagonists significantly increased the suppressiveness of soil from the integrated farming system against pepper blight. Overall, the soil microbiome under the long-term organic farming system was more suppressive to pepper blight, possibly owing to Bacillus antagonism in the rhizosphere. This study provided insights into microbiome management for disease suppression under greenhouse conditions.
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Affiliation(s)
- Huixiu Li
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Xiaoxu Cai
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Jingyang Gong
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Ting Xu
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
| | - Guo-chun Ding
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
- Beijing Key Laboratory of Biodiversity and Organic Farming, Beijing, China
| | - Ji Li
- College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
- Beijing Key Laboratory of Biodiversity and Organic Farming, Beijing, China
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41
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Gnatiuk T. Reduction of anthropogenic loading on an agroecosystem by increasing its energy efficiency. BIOSYSTEMS DIVERSITY 2018. [DOI: 10.15421/011811] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
Abstract
For full functioning , an artificially created agroecosystem should include qualitatively and quantitatively balanced components. This is possible if the anthropogenic burden on such a system is reduced and energy costs are balanced within it. In order to substantiate this statement, a production experiment was conducted in which short-term crop rotation was introduced on the land of an experimental field. Determination of energy efficiency of crop rotations and crop rotations in general was carried out by calculating technological maps of cultivating the corresponding crops. The higher the energy efficiency, the less the energy spent on cultivating crops and the less the cost of obtaining a unit of production from the corresponding area. After three years of research, we have determined that the most energy-intensive crop in short-term rotation is potatoes, less energy is spent on the cultivation of field pea-oat mixture, rye, oats with sowings of clover, and clover alone. The most energy-efficient was the organic fertilizer system (manure) for growing winter rye with a coefficient of energy efficiency of 5.10. For cultivation of field pea with oats for the same fertilizer system, the cultivation efficiency was 5.70. Growing oats with sowings of clover and using an organic system (manure) had an energy utility of 4.11. After application of the organic system (siderate) for the cultivation of winter rye, the coefficient of energy efficiency was 5.03 and for potatoes 2.21. After using the organoleptic system 50 : 50 to grow perennial grasses, this ratio was 33.05, and after the use of the mineral system for growing potatoes, 2.13. However for the cultivation of perennial grasses, we used the aftereffects of fertilizers introduced under the clover of the first year, and in the second year, under the perennial grasses, fertilizers were not applied at all, but for the cultivation of clover in crop rotation it is expedient to use an organomineral system of 50 : 50. Adhering to the basic principles of biological agriculture, namely the introduction of a scientifically grounded alternation of crops, rejecting the use of chemical plant protection products, avoiding the replacement of organic fertilizers (manure and siderate) by mineral fertilizers, it is possible to reduce energy costs for growing crops of crop rotation and crop rotation in general as a consequence, and thus to reduce the anthropogenic load on the whole agroecosystem .
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42
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Mariotte P, Mehrabi Z, Bezemer TM, De Deyn GB, Kulmatiski A, Drigo B, Veen G(C, van der Heijden MG, Kardol P. Plant–Soil Feedback: Bridging Natural and Agricultural Sciences. Trends Ecol Evol 2018; 33:129-142. [DOI: 10.1016/j.tree.2017.11.005] [Citation(s) in RCA: 183] [Impact Index Per Article: 30.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Revised: 11/09/2017] [Accepted: 11/10/2017] [Indexed: 01/24/2023]
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43
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Tsvetkov I, Atanassov A, Vlahova M, Carlier L, Christov N, Lefort F, Rusanov K, Badjakov I, Dincheva I, Tchamitchian M, Rakleova G, Georgieva L, Tamm L, Iantcheva A, Herforth-Rahmé J, Paplomatas E, Atanassov I. Plant organic farming research – current status and opportunities for future development. BIOTECHNOL BIOTEC EQ 2018. [DOI: 10.1080/13102818.2018.1427509] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Affiliation(s)
- Ivan Tsvetkov
- AgroBioInstitute, Agricultural Academy, Sofia, Bulgaria
| | - Atanas Atanassov
- Joint Genomic Center, Sofia University ‘St. Kliment Ohridski’, Sofia, Bulgaria
| | - Mariana Vlahova
- Joint Genomic Center, Sofia University ‘St. Kliment Ohridski’, Sofia, Bulgaria
| | - Lucien Carlier
- Plant Sciences Department, Institute for Agricultural and Fisheries Research, Merelbeke, Belgium
| | | | - Francois Lefort
- University of Applied Sciences and Arts Western Switzerland, Delemont, Switzerland
| | | | | | | | - Mark Tchamitchian
- INRA French National Institute for Agricultural Research, Avignon, France
| | - Goritsa Rakleova
- Joint Genomic Center, Sofia University ‘St. Kliment Ohridski’, Sofia, Bulgaria
| | | | - Lucius Tamm
- FiBL Forschungsinstitut für biologischen Landbau, Frick, Switzerland
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Islam W, Adnan M, Tayyab M, Hussain M, Islam SU. Phyto-metabolites; An Impregnable Shield against Plant Viruses. Nat Prod Commun 2018. [DOI: 10.1177/1934578x1801300131] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Worldwide, economically important crops are under continuous threat from plant viruses as they reproduce within the host and spread via various biological and non biological means. The problem can be minimized via application of integrated management approaches involving utilization of resistant genotypes and reducing the insect vector population. But such strategies are rarely applied in developing countries and farmers prefer to use chemicals against all type of diseases. But increasing use of pesticides is a leading cause of disaster to our ecosystem so alternative means such as phyto-metabolites should be explored for eco friendly management of plant viruses. So here we have reviewed about different phyto-metabolites that can be effectively and potentially used against various plant virus diseases. We further explained about the various primary and secondary metabolites such as alkaloids, essential oils, flavonoids, polysaccharides and proteins. The review highlights the recent advances in the field of phyto-metabolites utilization against plant viruses and sums up via hoping through prospects that future drugs will be safer for human beings and our ecosystem.
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Affiliation(s)
- Waqar Islam
- College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China
- Fujian Province Key Laboratory for Plant Viruses, Institute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China
| | - Muhammad Adnan
- College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China
| | - Muhammad Tayyab
- College of Crop Sciences, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China
| | - Mubasher Hussain
- College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China
- College of Horticulture, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China
| | - Saif Ul Islam
- College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China
- Fujian Province Key Laboratory for Plant Viruses, Institute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, China
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Mie A, Andersen HR, Gunnarsson S, Kahl J, Kesse-Guyot E, Rembiałkowska E, Quaglio G, Grandjean P. Human health implications of organic food and organic agriculture: a comprehensive review. Environ Health 2017; 16:111. [PMID: 29073935 PMCID: PMC5658984 DOI: 10.1186/s12940-017-0315-4] [Citation(s) in RCA: 111] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Accepted: 10/02/2017] [Indexed: 05/08/2023]
Abstract
This review summarises existing evidence on the impact of organic food on human health. It compares organic vs. conventional food production with respect to parameters important to human health and discusses the potential impact of organic management practices with an emphasis on EU conditions. Organic food consumption may reduce the risk of allergic disease and of overweight and obesity, but the evidence is not conclusive due to likely residual confounding, as consumers of organic food tend to have healthier lifestyles overall. However, animal experiments suggest that identically composed feed from organic or conventional production impacts in different ways on growth and development. In organic agriculture, the use of pesticides is restricted, while residues in conventional fruits and vegetables constitute the main source of human pesticide exposures. Epidemiological studies have reported adverse effects of certain pesticides on children's cognitive development at current levels of exposure, but these data have so far not been applied in formal risk assessments of individual pesticides. Differences in the composition between organic and conventional crops are limited, such as a modestly higher content of phenolic compounds in organic fruit and vegetables, and likely also a lower content of cadmium in organic cereal crops. Organic dairy products, and perhaps also meats, have a higher content of omega-3 fatty acids compared to conventional products. However, these differences are likely of marginal nutritional significance. Of greater concern is the prevalent use of antibiotics in conventional animal production as a key driver of antibiotic resistance in society; antibiotic use is less intensive in organic production. Overall, this review emphasises several documented and likely human health benefits associated with organic food production, and application of such production methods is likely to be beneficial within conventional agriculture, e.g., in integrated pest management.
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Affiliation(s)
- Axel Mie
- Karolinska Institutet, Department of Clinical Science and Education, Södersjukhuset, 11883 Stockholm, Sweden
- Swedish University of Agricultural Sciences (SLU), Centre for Organic Food and Farming (EPOK), Ultuna, Sweden
| | - Helle Raun Andersen
- University of Southern Denmark, Department of Public Health, Odense, Denmark
| | - Stefan Gunnarsson
- Swedish University of Agricultural Sciences (SLU), Department of Animal Environment and Health, Skara, Sweden
| | - Johannes Kahl
- University of Copenhagen, Department of Nutrition, Exercise and Sports, Frederiksberg, Denmark
| | - Emmanuelle Kesse-Guyot
- Research Unit on Nutritional Epidemiology (U1153 Inserm, U1125 INRA, CNAM, Université Paris 13), Centre of Research in Epidemiology and Statistics Sorbonne Paris Cité, Bobigny, France
| | - Ewa Rembiałkowska
- Warsaw University of Life Sciences, Department of Functional & Organic Food & Commodities, Warsaw, Poland
| | - Gianluca Quaglio
- Scientific Foresight Unit (Science and Technology Options Assessment [STOA]), Directorate-General for Parliamentary Research Services (EPRS), European Parliament, Brussels, Belgium
| | - Philippe Grandjean
- University of Southern Denmark, Department of Public Health, Odense, Denmark
- Harvard T.H. Chan School of Public Health, Department of Environmental Health, Boston, USA
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46
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Duke SO. Summing up the past year for Pest Management Science. PEST MANAGEMENT SCIENCE 2017; 73:7-8. [PMID: 27910293 DOI: 10.1002/ps.4466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
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Hazra KK, Swain DK, Bohra A, Singh SS, Kumar N, Nath CP. Organic rice: potential production strategies, challenges and prospects. ACTA ACUST UNITED AC 2016. [DOI: 10.1007/s13165-016-0172-4] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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van Bruggen AHC, Finckh MR. Plant Diseases and Management Approaches in Organic Farming Systems. ANNUAL REVIEW OF PHYTOPATHOLOGY 2016; 54:25-54. [PMID: 27215969 DOI: 10.1146/annurev-phyto-080615-100123] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Organic agriculture has expanded worldwide. Numerous papers were published in the past 20 years comparing plant diseases in organic and conventional crops. Root diseases are generally less severe owing to greater soil health, whereas some foliar diseases can be problematic in organic agriculture. The soil microbial community and nitrogen availability play an important role in disease development and yield. Recently, the focus has shifted to optimizing organic crop production by improving plant nutrition, weed control, and plant health. Crop-loss assessment relating productivity to all yield-forming and -reducing factors would benefit organic production and sustainability evaluation.
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Affiliation(s)
- A H C van Bruggen
- Department of Plant Pathology and Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611;
| | - M R Finckh
- Faculty of Organic Agricultural Sciences, Ecological Plant Protection, University of Kassel, 37213 Witzenhausen, Germany
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