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Fusè M, Mazzeo G, Ghidinelli S, Evidente A, Abbate S, Longhi G. Experimental and theoretical aspects of magnetic circular dichroism and magnetic circularly polarized luminescence in the UV, visible and IR ranges: A review. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 319:124583. [PMID: 38850611 DOI: 10.1016/j.saa.2024.124583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2024] [Revised: 05/21/2024] [Accepted: 05/30/2024] [Indexed: 06/10/2024]
Abstract
A historical sketch of the MCD (magnetic circular dichroism) spectroscopy is reported in its experimental and theoretical aspects. MCPL (magnetic circularly polarized luminescence) is also considered. The main studies are presented encompassing porphyrinoid systems, aggregates and materials, as well as simple organic molecules useful for the advancement of the interpretation. The MCD of chiral systems is discussed with special attention to new studies of natural products with potential pharmaceutical valence, including Amaryllidaceae alkaloids and related isocarbostyrils. Finally, the vibrational form of MCD, called MVCD, which is recorded in the IR part of the spectrum is also discussed. A final brief note on perspectives is given.
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Affiliation(s)
- Marco Fusè
- Dipartimento di Medicina Molecolare e Traslazionale, Università di Brescia, Viale Europa 11, 25123 Brescia, Italy
| | - Giuseppe Mazzeo
- Dipartimento di Medicina Molecolare e Traslazionale, Università di Brescia, Viale Europa 11, 25123 Brescia, Italy
| | - Simone Ghidinelli
- Dipartimento di Medicina Molecolare e Traslazionale, Università di Brescia, Viale Europa 11, 25123 Brescia, Italy
| | - Antonio Evidente
- Institute of Sciences of Food Production, National Research Council, Via Amendola 122/O, 70185 Bari, Italy
| | - Sergio Abbate
- Dipartimento di Medicina Molecolare e Traslazionale, Università di Brescia, Viale Europa 11, 25123 Brescia, Italy; Istituto Nazionale di Ottica, INO-CNR, Research Unit of Brescia, c/o CSMT, Via Branze 35, 25123 Brescia, Italy
| | - Giovanna Longhi
- Dipartimento di Medicina Molecolare e Traslazionale, Università di Brescia, Viale Europa 11, 25123 Brescia, Italy; Istituto Nazionale di Ottica, INO-CNR, Research Unit of Brescia, c/o CSMT, Via Branze 35, 25123 Brescia, Italy
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2
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Williamson KI, Herr DJC, Mo Y. Mapping the correlations between bandgap, HOMO, and LUMO trends for meta substituted Zn-MOFs. J Comput Chem 2024; 45:2119-2127. [PMID: 38757907 DOI: 10.1002/jcc.27432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2024] [Revised: 04/11/2024] [Accepted: 04/24/2024] [Indexed: 05/18/2024]
Abstract
Bandgap is a key property that determines electrical and optical properties in materials. Modulating the bandgap thus is critical in developing novel materials particularly semiconductors with improved features. This study examines the bandgap, highest occupied molecular orbital (HOMO), and lowest unoccupied molecular orbital (LUMO) energy level trends in a metal organic framework, metal-organic framework 5 (MOF-5), as a function of Hammett substituent effect (with the constant σm in the meta-position of the benzene ring) and solvent dielectric effect (with the constant ε). Specifically, experimental design and response surface methodologies helped to assess the significance of trends and correlations between these molecular properties with σm and ε. While the HOMO and LUMO decrease with increasing σm, the LUMO exhibits greater sensitivity to the substituent's electron withdrawing capability. The relative difference in these trends helps to explain why the bandgap tends to decrease with increasing σm.
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Affiliation(s)
- Kyle I Williamson
- Department of Nanoscience, Joint School of Nanoscience and Nanoengineering, University of North Carolina at Greensboro, Greensboro, North Carolina, USA
| | - Daniel J C Herr
- Department of Nanoscience, Joint School of Nanoscience and Nanoengineering, University of North Carolina at Greensboro, Greensboro, North Carolina, USA
| | - Yirong Mo
- Department of Nanoscience, Joint School of Nanoscience and Nanoengineering, University of North Carolina at Greensboro, Greensboro, North Carolina, USA
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3
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Barretta P, Scoditti S, Belletto D, Ponte F, Vigna V, Mazzone G, Sicilia E. Ruthenium complexes bearing nile red chromophore and one of its derivative: Theoretical evaluation of PDT-related properties. J Comput Chem 2024; 45:2034-2041. [PMID: 38733370 DOI: 10.1002/jcc.27392] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 03/25/2024] [Accepted: 04/24/2024] [Indexed: 05/13/2024]
Abstract
The outcomes of DFT-based calculations are here reported to assess the applicability of two synthesized polypyridyl Ru(II) complexes, bearing ethynyl nile red (NR) on a bpy ligand, and two analogues, bearing modified-NR, in photodynamic therapy. The absorption spectra, together with the non-radiative rate constants for the S1 - Tn intersystem crossing transitions, have been computed for this purpose. Calculations evidence that the structural modification on the chromophore destabilizes the HOMO of the complexes thus reducing the H-L gap and, consequently, red shifting the maximum absorption wavelength within the therapeutic window, up to 620 nm. Moreover, the favored ISC process from the bright state involves the triplet state closest in energy, which is also characterized by the highest SOC value and by the involvement of the whole bpy ligand bearing the chromophore in delocalising the unpaired electrons. These outcomes show that the photophysical behavior of the complexes is dominated by the chromophore.
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Affiliation(s)
- Pierraffaele Barretta
- Department of Chemistry and Chemical Technologies, Università della Calabria, Arcavacata di Rende (CS), Italy
| | - Stefano Scoditti
- Department of Chemistry and Chemical Technologies, Università della Calabria, Arcavacata di Rende (CS), Italy
| | - Daniele Belletto
- Department of Chemistry and Chemical Technologies, Università della Calabria, Arcavacata di Rende (CS), Italy
| | - Fortuna Ponte
- Department of Chemistry and Chemical Technologies, Università della Calabria, Arcavacata di Rende (CS), Italy
| | - Vincenzo Vigna
- Department of Chemistry and Chemical Technologies, Università della Calabria, Arcavacata di Rende (CS), Italy
| | - Gloria Mazzone
- Department of Chemistry and Chemical Technologies, Università della Calabria, Arcavacata di Rende (CS), Italy
| | - Emilia Sicilia
- Department of Chemistry and Chemical Technologies, Università della Calabria, Arcavacata di Rende (CS), Italy
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4
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Benoune RA, Dems MA, Boulcina R, Bensouici C, Robert A, Harakat D, Debache A. Synthesis, biological evaluation, theoretical calculations, QSAR and molecular docking studies of novel arylaminonaphthols as potent antioxidants and BChE inhibitors. Bioorg Chem 2024; 150:107598. [PMID: 38959645 DOI: 10.1016/j.bioorg.2024.107598] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2024] [Revised: 06/12/2024] [Accepted: 06/17/2024] [Indexed: 07/05/2024]
Abstract
A completely green protocol was developed for the synthesis of a series of arylaminonaphthol derivatives in the presence of N-ethylethanolamine (NEEA) as a catalyst under ultrasonic irradiation and solventless conditions. The major assets of this methodology were the use of non-toxic organic medium, available catalyst, mild reaction condition, and good to excellent yield of desired products. All of the synthesized products were screened for their in vitro antioxidant activity using DPPH, ABTS, and Ferric-phenanthroline assays and it was found that most of them are potent antioxidant agents. Also, their butyrylcholinesterase inhibitory activity has been investigated in vitro. All tested compounds exhibited potential inhibitory activity toward BuChE when compared to standard reference drug galantamine, however, compounds 4r, 4u, 4 g and 4x gave higher butyrylcholinesterase inhibitory with IC50 values of 14.78 ± 0.65 µM, 16.18 ± 0.50 µM, 20.00 ± 0.50 µM, and 20.28 ± 0.08 µM respectively. On the other hand, we employed density functional theory (DFT), calculations to analyze molecular geometry and global reactivity descriptors, and MESP analysis to predict electrophilic and nucleophilic attacks. A quantitative structure-activity relationship (QSAR) investigation was conducted on the antioxidant and butyrylcholinesterase properties of 25 arylaminonaphthol derivatives, resulting in robust and satisfactory models. To evaluate their anti-Alzheimer's activity, compounds 4 g, 4q, 4r, 4u, and 4x underwent docking simulations at the active site of the acetylcholinesterase (AChE) and butyrylcholinesterase (BChE), revealing why these compounds displayed superior activity, consistent with the biological findings.
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Affiliation(s)
- Racha Amira Benoune
- Laboratory of Synthesis of Molecules with Biological Interest, Faculty of Exact Sciences, Mentouri - Constantine 1 University, 25000 Constantine, Algeria
| | | | - Raouf Boulcina
- Laboratory of Synthesis of Molecules with Biological Interest, Faculty of Exact Sciences, Mentouri - Constantine 1 University, 25000 Constantine, Algeria; Department of Engineering Process, Faculty of Technology, Mostefa Benboulaïd-Batna 2 University, 5000 Batna, Algeria.
| | | | - Anthony Robert
- Reims Champagne-Ardenne University, CNRS UMR 7312, ICMR, URCATech, 51100 Reims, France
| | - Dominique Harakat
- Reims Champagne-Ardenne University, CNRS UMR 7312, ICMR, URCATech, 51100 Reims, France
| | - Abdelmadjid Debache
- Laboratory of Synthesis of Molecules with Biological Interest, Faculty of Exact Sciences, Mentouri - Constantine 1 University, 25000 Constantine, Algeria
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5
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Li G, Qiu T, Wu Q, Zhao Z, Wang L, Li Y, Geng Y, Tan H. Pyrene-Alkyne-Based Conjugated Porous Polymers with Skeleton Distortion-Mediated ⋅O 2 - and 1O 2 Generation for High-Selectivity Organic Photosynthesis. Angew Chem Int Ed Engl 2024; 63:e202405396. [PMID: 38818672 DOI: 10.1002/anie.202405396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Revised: 05/28/2024] [Accepted: 05/29/2024] [Indexed: 06/01/2024]
Abstract
Reactive oxygen species (ROS) play a crucial role in determining photocatalytic reaction pathways, intermediate species, and product selectivity. However, research on ROS regulation in polymer photocatalysts is still in its early stages. Herein, we successfully achieved series of modulations to the skeleton of Pyrene-alkyne-based (Tetraethynylpyrene (TEPY)) conjugated porous polymers (CPPs) by altering the linkers (1,4-dibromobenzene (BE), 4,4'-dibromobiphenyl (IP), and 3,3'-dibromobiphenyl (BP)). Experiments combined with theoretical calculations indicate that BE-TEPY exhibits a planar structure with minimal exciton binding energy, which favors exciton dissociation followed by charge transfer with adsorbed O2 to produce ⋅O2 -. Thus BE-TEPY shows optimal photocatalytic activity for phenylboronic acid oxidation and [3+2] cycloaddition. Conversely, the skeleton of BP-TEPY is significantly distorted. Its planar conjugation decreases, intersystem crossing (ISC) efficiency increases, which makes it more prone for resonance energy transfer to generate 1O2. Therefore, BP-TEPY displays best photocatalytic activity in [4+2] cycloaddition and thioanisole oxidation. Both above reactant conversion and its product selectivity exceed 99 %. This work systematically reveals the intrinsic structure-activity relationship among the skeleton structure of CPPs, excitonic behavior, and selective generation of ROS, providing new insights for the rational design of highly efficient and selective CPPs photocatalysts.
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Affiliation(s)
- Guobang Li
- Key Laboratory of Polyoxometalate and Reticular Material Chemistry of Ministry of Education Faculty of Chemistry, Faculty of Physics, Northeast Normal University, Changchun, 130024, China
| | - Tianyu Qiu
- Key Laboratory of Polyoxometalate and Reticular Material Chemistry of Ministry of Education Faculty of Chemistry, Faculty of Physics, Northeast Normal University, Changchun, 130024, China
| | - Qi Wu
- Key Laboratory of Polyoxometalate and Reticular Material Chemistry of Ministry of Education Faculty of Chemistry, Faculty of Physics, Northeast Normal University, Changchun, 130024, China
| | - Zhao Zhao
- Key Laboratory of Polyoxometalate and Reticular Material Chemistry of Ministry of Education Faculty of Chemistry, Faculty of Physics, Northeast Normal University, Changchun, 130024, China
| | - Lili Wang
- State Key Laboratory for Superlattices and Microstructures Institute of Semiconductors, Chinese Academy of Sciences, Beijing, 100083, P. R. China
| | - Yangguang Li
- Key Laboratory of Polyoxometalate and Reticular Material Chemistry of Ministry of Education Faculty of Chemistry, Faculty of Physics, Northeast Normal University, Changchun, 130024, China
| | - Yun Geng
- Key Laboratory of Polyoxometalate and Reticular Material Chemistry of Ministry of Education Faculty of Chemistry, Faculty of Physics, Northeast Normal University, Changchun, 130024, China
| | - Huaqiao Tan
- Key Laboratory of Polyoxometalate and Reticular Material Chemistry of Ministry of Education Faculty of Chemistry, Faculty of Physics, Northeast Normal University, Changchun, 130024, China
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6
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Vishnevskiy YV, Heider Y, Scheschkewitz D. Experimental molecular structures in the gas phase at the upper size limit: The case of Si6Tip6. J Chem Phys 2024; 161:054307. [PMID: 39092937 DOI: 10.1063/5.0219926] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Accepted: 07/22/2024] [Indexed: 08/04/2024] Open
Abstract
Currently, the largest (ramax = 19.9 Å) and by far the most complicated (234 atoms, C1 symmetry, 696 independent geometrical parameters, and 27 261 interatomic terms) experimental molecular structure of a cage-type Si6Tip6 (Tip = 2,4,6-iPr3C6H2) isomer has been investigated in the gas phase by the electron diffraction method (Tav = 645 K) supplemented with theoretical simulations. A detailed analysis of the current possibilities for experimentally investigating large molecular structures is performed. A series of density functional theory approximations and the role of dispersion interactions have been benchmarked using the obtained data. Based on the refined geometry of Si6Tip6, various quantum-chemical methods have been applied for the investigation of the electronic structure of its Si6 core. In particular, natural bond orbital, quantum theory of atoms in molecules, interacting quantum atoms, fractional occupation number weighted density, and complete active space self-consistent field (CASSCF) methods were utilized. The diradical character of the molecule has been assessed by the UHF and CASSCF approximations. The problem of bonding between the hemispheroidal silicon atoms has been investigated.
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Affiliation(s)
- Yury V Vishnevskiy
- Lehrstuhl für Anorganische Chemie und Strukturchemie, Fakultät für Chemie, Universität Bielefeld, Universitätsstr. 25, 33615 Bielefeld, Germany
| | - Yannic Heider
- Chair in General and Inorganic Chemistry, Saarland University, Campus C4.1, 66123 Saarbrücken, Germany
| | - David Scheschkewitz
- Chair in General and Inorganic Chemistry, Saarland University, Campus C4.1, 66123 Saarbrücken, Germany
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7
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Jiang Y, Cao W, Hu Z, Yue Z, Bai C, Li R, Liu Z, Wang XB, Peng P. A comprehensive study on three typical photoacid generators using photoelectron spectroscopy and ab initio calculations. J Chem Phys 2024; 161:054311. [PMID: 39105554 DOI: 10.1063/5.0218918] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Accepted: 07/17/2024] [Indexed: 08/07/2024] Open
Abstract
Conducting a comprehensive molecular-level evaluation of a photoacid generator (PAG) and its subsequent impact on lithography performance can facilitate the rational design of a promising 193 nm photoresist tailored to specific requirements. In this study, we integrated spectroscopy and computational techniques to meticulously investigate the pivotal factors of three prototypical PAG anions, p-toluenesulfonate (pTS-), 2-(trifluoromethyl)benzene-1-sulfonate (TFMBS-), and triflate (TF-), in the lithography process. Our findings reveal a significant redshift in the absorption spectra caused by specific PAG anions, attributed to their involvement in electronic transition processes, thereby enhancing the transparency of the standard PAG cation, triphenylsulfonium (TPS+), particularly at ∼193 nm. Furthermore, the electronic stability of PAG anions can be enhanced by solvent effects with varying degrees of strength. We observed the lowest vertical detachment energy of 6.6 eV of pTS- in PGMEA solution based on the polarizable continuum model, which prevents anion loss at 193 nm lithography. In addition, our findings indicate gas-phase proton affinity values of 316.4 kcal/mol for pTS-, 308.1 kcal/mol for TFMBS-, and 303.2 kcal/mol for TF-, which suggest the increasing acidity strength, yet even the weakest acid pTS- is still stronger than strong acid HBr. The photolysis of TPS+-based PAG, TPS+·pTS-, generated an excited state leading to homolysis bond cleavage with the lowest reaction energy of 83 kcal/mol. Overall, the PAG anion pTS- displayed moderate acidity, possessed the lowest photolysis reaction energy, and demonstrated an appropriate redshift. These properties collectively render it a promising candidate for an effective acid producer.
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Affiliation(s)
- Yanrong Jiang
- Center for Transformative Science, ShanghaiTech University, Shanghai 201210, China
| | - Wenjin Cao
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, USA
| | - Zhubin Hu
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200241, China
| | - Zhongyao Yue
- Center for Transformative Science, ShanghaiTech University, Shanghai 201210, China
| | - Chunyuan Bai
- Center for Transformative Science, ShanghaiTech University, Shanghai 201210, China
| | - Ruxin Li
- Center for Transformative Science, ShanghaiTech University, Shanghai 201210, China
| | - Zhi Liu
- Center for Transformative Science, ShanghaiTech University, Shanghai 201210, China
| | - Xue-Bin Wang
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, USA
| | - Peng Peng
- Center for Transformative Science, ShanghaiTech University, Shanghai 201210, China
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8
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Nakajima Y, Ohmura T, Seino J. Using atomic clustering based on structural and electronic descriptors that consider surrounding environment to evaluate local properties of DFT functionals. J Comput Chem 2024; 45:1870-1879. [PMID: 38686778 DOI: 10.1002/jcc.27375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2023] [Revised: 04/01/2024] [Accepted: 04/03/2024] [Indexed: 05/02/2024]
Abstract
We developed a method for evaluating the accuracies of the local properties of DFT functionals in detail using a clustering method based on machine learning and structural/electronic descriptors. We generated 36 clusters consistent with human intuition using 30,436 carbon atoms from the QM9 dataset. The results were used to evaluate 13C NMR chemical shifts calculated using 84 DFT functionals. Carbon atoms were grouped based on their similar environments, reducing errors within these groups. This enables more accurate assessment of the accuracy using a specific DFT functional. Therefore, the present atomic clustering provides more detailed insight into accuracy verification.
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Affiliation(s)
- Yuya Nakajima
- Waseda Research Institute for Science and Engineering, Tokyo, Japan
| | - Takuto Ohmura
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University, Tokyo, Japan
| | - Junji Seino
- Waseda Research Institute for Science and Engineering, Tokyo, Japan
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University, Tokyo, Japan
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9
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Reinhardt CR, Manetsch MT, Li WL, Román-Leshkov Y, Head-Gordon T, Kulik HJ. Computational Screening of Putative Catalyst Transition Metal Complexes as Guests in a Ga 4L 612- Nanocage. Inorg Chem 2024; 63:14609-14622. [PMID: 39049593 DOI: 10.1021/acs.inorgchem.4c02113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2024]
Abstract
Metal-organic cages form well-defined microenvironments that can enhance the catalytic proficiency of encapsulated transition metal complexes (TMCs). We introduce a screening protocol to efficiently identify TMCs that are promising candidates for encapsulation in the Ga4L612- nanocage. We obtain TMCs from the Cambridge Structural Database with geometric and electronic characteristics amenable to encapsulation and mine the text of associated manuscripts to curate TMCs with documented catalytic functionality. By docking candidate TMCs inside the nanocage cavity and carrying out electronic structure calculations, we identify a subset of successfully optimized candidates (TMC-34) and observe that encapsulated guests occupy an average of 60% of the cavity volume, in line with previous observations. Notably, some guests occupy as much as 72% of the cavity as a result of linker rotation. Encapsulation has a universal effect on the electrostatic potential (ESP), systematically decreasing the ESP at the metal center of each TMC in the TMC-34 data set, while minimally altering TMC metal partial charges. Collectively these observations support geometry-based screening of potential guests and suggest that encapsulation in Ga4L612- cages could electrostatically stabilize diverse cationic or electropositive intermediates. We highlight candidate guests with associated known reactivity and solubility most amenable for encapsulation in experimental follow-up studies.
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Affiliation(s)
- Clorice R Reinhardt
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Melissa T Manetsch
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Wan-Lu Li
- Kenneth S. Pitzer Center for Theoretical Chemistry, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Yuriy Román-Leshkov
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Teresa Head-Gordon
- Kenneth S. Pitzer Center for Theoretical Chemistry, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States
- Department of Bioengineering, University of California, Berkeley, California 94720, United States
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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10
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Buglak AA. Antioxidant properties of α-amino acids: a density functional theory viewpoint. Free Radic Res 2024:1-8. [PMID: 39101778 DOI: 10.1080/10715762.2024.2385338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 07/17/2024] [Indexed: 08/06/2024]
Abstract
The antioxidant properties of 21 proteinogenic amino acids (AAs) and 3,4-dioxophenylanine (DOPA) have been studied in implicit water using density functional theory (DFT). All the calculations have been performed according to three oxidation mechanisms: (1) hydrogen-atom transfer (HAT); (2) single electron transfer followed by proton transfer (SET-PT); and (3) sequential proton-loss electron transfer (SPLET). As a result, five AAs with the highest antioxidant capacity have been established: DOPA, selenocysteine (Sec), tyrosine (Tyr), cysteine (Cys), and tryptophan (Trp). Also, global reactivity in terms of hardness/softness has been evaluated, as well as Fukui indices of local reactivity. Trp has been determined as the most reactive molecule, whereas selenium atom of Sec has been established as the most reactive atom. All the findings are in agreement with the recent literature on both experimental and theoretical studies of amino acids antioxidant activity. However, to the best of my knowledge, the calculations for one electron redox reactions of zwitterionic amino acids in implicit water have been performed for the first time.
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Affiliation(s)
- Andrey A Buglak
- Faculty of Physics, St. Petersburg State University, Saint-Petersburg, Russia
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11
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Kaya MO, Kerimak-Öner MN, Demirci T, Musatat AB, Özdemir O, Kaya Y, Arslan M. Rational Design, Synthesis, and Computational Investigation of Dihydropyridine [2,3-d] Pyrimidines as Polyphenol Oxidase Inhibitors with Improved Potency. Protein J 2024:10.1007/s10930-024-10220-1. [PMID: 39097848 DOI: 10.1007/s10930-024-10220-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/28/2024] [Indexed: 08/05/2024]
Abstract
Polyphenol oxidase (PPO) is an industrially important enzyme associated with browning reactions. In the present study, a set of ten new dihydropyridine [2,3-d] pyrimidines (TD-Hid-1-10) were synthesized and was found to be proven characteristically by 1H NMR, 13C NMR, IR, elemental analysis, and assessed as possible PPO inhibitors. PPO was purified from banana using three-phase partitioning, achieving an 18.65-fold purification and 136.47% activity recovery. Enzyme kinetics revealed that the compounds TD-Hid-6 and TD-Hid-7 are to be the most potent inhibitors, exhibiting mixed-type inhibition profile with IC50 values of 1.14 µM, 5.29 µM respectively against purified PPO enzyme. Electronic structure calculations at the B3LYP/PBE0 level of theories using def-2 SVP, def2-TZVP basis sets with various molecular descriptors characterized the electronic behavior of studied derivatives TD-Hid-1-10. Molecular electrostatic potential (MEP) and reduced density gradient analyses of RDG-NCI provided insights into charge distributions and weak intermolecular interactions. Docking study simulations predicted binding poses within crucial amino acid sequence in the 2y9x enzyme's active site, which is typically similar in sequence to the PPO form is not allowed. Ligands were analysed in terms of binding energies, inhibitor concentrations (mM) and various molecular interactions such as H-bonds, H-carbon, π-carbon, π-sigma, π-sigma, π-π T-shaped, π-π stacked, π-alkyl, Van der Waals and Cu interactions. The lowest binding energy (-7.83 kcal/mol) and the highest inhibitory effect (1.83 mM) were shown by the ligand Td-Hid-6, which forms H-bonds with Met280 and Asn260, exhibits π-sigma interactions with His61 and π-alkyl interactions with Val283. Other ligands also showed different interactions with various amino acids; for example, the Td-Hid-1 ligand formed H-bonds with His244 and showed π-sigma interactions with His244 and Val283.
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Affiliation(s)
- Mustafa Oğuzhan Kaya
- Department of Chemistry, Faculty of Arts and Science, Kocaeli University, Kocaeli, 41001, Turkey
| | - Mine Nazan Kerimak-Öner
- Department of Medicinal and Aromatic Plants, İzmit Vocational High School, Kocaeli University, Kocaeli, 41285, Turkey
| | - Tuna Demirci
- Scientific and Technological Research Laboratory, Düzce University, Düzce, 81620, Turkey
| | | | - Oğuzhan Özdemir
- Department of Veterinary Science, Technical Sciences Vocational School, Batman University, Batman, 72000, Turkey
| | - Yeşim Kaya
- Department of Chemistry, Faculty of Arts and Science, Kocaeli University, Kocaeli, 41001, Turkey
| | - Mustafa Arslan
- Department of Chemistry, Faculty of Sciences, Sakarya University, Sakarya, 54050, Turkey
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12
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Camarillo-Cisneros J, Ramirez-Alonso G, Arzate-Quintana C, Varela-Rodríguez H, Guzman-Pando A. MolGC: molecular geometry comparator algorithm for bond length mean absolute error computation on molecules. Mol Divers 2024:10.1007/s11030-024-10945-2. [PMID: 39097550 DOI: 10.1007/s11030-024-10945-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Accepted: 07/22/2024] [Indexed: 08/05/2024]
Abstract
Density Functional Theory (DFT) is extensively used in theoretical and computational chemistry to study molecular and crystal properties across diverse fields, including quantum chemistry, materials physics, catalysis, biochemistry, and surface science. Despite advances in DFT hardware and software for optimized geometries, achieving consensus in molecular structure comparisons with experimental counterparts remains a challenge. This difficulty is exacerbated by the lack of automated bond length comparison tools, resulting in labor-intensive and error-prone manual processes. To address these challenges, we propose MolGC, a Molecular Geometry Comparator algorithm that automates the comparison of optimized geometries from different theoretical levels. MolGC calculates the mean absolute error (MAE) of bond lengths by integrating data from various DFT software. It provides interactive and customizable visualization of geometries, enabling users to explore different views for enhanced analysis. In addition, it saves MAE computations for further analysis and offers a comprehensive statistical summary of the results. MolGC effectively addresses complex graph labeling challenges, ensuring accurate identification and categorization of bonds in diverse chemical structures. It achieves a 98.91% average rate in correct bond label assignments on an antibiotics dataset, showcasing its effectiveness for comparing molecular bond lengths across geometries of varying complexity and size. The executable file and software resources for running MolGC can be downloaded from https://github.com/AbimaelGP/MolGC/tree/main .
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Affiliation(s)
- Javier Camarillo-Cisneros
- Computational Chemistry Physics Laboratory, Facultad de Medicina y Ciencias Biomedicas, Universidad Autonoma de Chihuahua, Campus II, 31125, Chihuahua, Mexico
| | - Graciela Ramirez-Alonso
- Faculty of Engineering, Universidad Autonoma de Chihuahua, Campus II, 31125, Chihuahua, Mexico
| | - Carlos Arzate-Quintana
- Computational Chemistry Physics Laboratory, Facultad de Medicina y Ciencias Biomedicas, Universidad Autonoma de Chihuahua, Campus II, 31125, Chihuahua, Mexico
| | - Hugo Varela-Rodríguez
- Computational Chemistry Physics Laboratory, Facultad de Medicina y Ciencias Biomedicas, Universidad Autonoma de Chihuahua, Campus II, 31125, Chihuahua, Mexico
| | - Abimael Guzman-Pando
- Computational Chemistry Physics Laboratory, Facultad de Medicina y Ciencias Biomedicas, Universidad Autonoma de Chihuahua, Campus II, 31125, Chihuahua, Mexico.
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13
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Qiao C, Wang C, Luo H, Ma Y, Luo X, Zhang S, Huo D, Hou C. Development of a Zn-Based Single-Atom Nanozyme for Efficient Hydrolysis of Glycosidic Bonds. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024:e2402674. [PMID: 39096071 DOI: 10.1002/smll.202402674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Revised: 07/17/2024] [Indexed: 08/04/2024]
Abstract
Hydrolytic enzymes are essential components in second-generation biofuel technology and food fermentation processes. Nanozymes show promise for large-scale industrial applications as replacements for natural enzymes due to their distinct advantages. However, there remains a research gap concerning glycosidase nanozymes. In this study, a Zn-based single-atom nanozyme (ZnN4-900) is developed for efficient glycosidic bond hydrolysis in an aqueous solution. The planar structure of the class-porphyrin N4 material approximatively mimicked the catalytic centers of natural enzymes, facilitating oxidase-like (OXD-like) activity and promoting glycosidic bond cleavage. Theoretical calculations show that the Zn site can act as Lewis acids, attacking the C─O bond in glycosidic bonds. Additionally, ZnN4-900 has the ability to degrade starch and produce reducing sugars that increased yeast cell biomass by 32.86% and ethanol production by 14.56%. This catalyst held promising potential for enhancing processes in ethanol brewing and starch degradation industries.
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Affiliation(s)
- Cailin Qiao
- Key Laboratory for Biorheological Science and Technology of Ministry of Education, Bioengineering College of Chongqing University, Chongqing, 400044, P. R. China
| | - Chao Wang
- Key Laboratory for Biorheological Science and Technology of Ministry of Education, Bioengineering College of Chongqing University, Chongqing, 400044, P. R. China
- National Engineering Research Center of Solid-State Brewing, Luzhou Laojiao Group Co. Ltd., Luzhou, 646000, P. R. China
| | - Huibo Luo
- Liquor Making Biology Technology and Application of Key Laboratory of Sichuan Province, College of Bioengineering, Sichuan University of Science and Engineering, 188 University Town, Yi bin, 644000, P. R. China
| | - Yi Ma
- Liquor Making Biology Technology and Application of Key Laboratory of Sichuan Province, College of Bioengineering, Sichuan University of Science and Engineering, 188 University Town, Yi bin, 644000, P. R. China
| | - Xiaogang Luo
- Key Laboratory for Biorheological Science and Technology of Ministry of Education, Bioengineering College of Chongqing University, Chongqing, 400044, P. R. China
| | - Suyi Zhang
- National Engineering Research Center of Solid-State Brewing, Luzhou Laojiao Group Co. Ltd., Luzhou, 646000, P. R. China
| | - Danqun Huo
- Key Laboratory for Biorheological Science and Technology of Ministry of Education, Bioengineering College of Chongqing University, Chongqing, 400044, P. R. China
| | - Changjun Hou
- Key Laboratory for Biorheological Science and Technology of Ministry of Education, Bioengineering College of Chongqing University, Chongqing, 400044, P. R. China
- Liquor Making Biology Technology and Application of Key Laboratory of Sichuan Province, College of Bioengineering, Sichuan University of Science and Engineering, 188 University Town, Yi bin, 644000, P. R. China
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14
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Pang X, Han S, Zheng K, Jiang L, Wang J, Qian S. Cellulose nanocrystal-stabilized Pickering emulsion gels as vehicles for follicular delivery of minoxidil. Int J Biol Macromol 2024:134297. [PMID: 39097055 DOI: 10.1016/j.ijbiomac.2024.134297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 07/20/2024] [Accepted: 07/28/2024] [Indexed: 08/05/2024]
Abstract
Minoxidil (MXD) is the only topical over-the-counter medicine approved by the United States Food and Drug Administration for the treatment of androgenetic alopecia. For the purpose of targeting the delivery of MXD to dermal papilla in the hair follicle, MXD Pickering emulsion gels were fabricated based on the designability of deep eutectic solvent (DES) and the versatility of cellulose nanocrystal (CNC) and sodium carboxymethyl cellulose (CMC-Na). Structural studies and theoretical calculations results suggest that CNC can stabilize the interface between the MXD-DES and water, leading to the formation of Pickering emulsions. The rheological properties and stabilities of MXD Pickering emulsions were enhanced through gelation using CMC-Na, which highlights the good compatibility and effectiveness of natural polysaccharides in emulsion gels. Due to the particle size of emulsion droplets (679 nm) and the rheological properties of emulsion gel, the fabricated MXD formulations show in vivo hair regrowth promotion and hair follicle targeting capabilities. Interestingly, the MXD Pickering emulsion-based formulations exert therapeutic effects by upregulating the expression of hair growth factors. The proposed nanodrug strategy based on supramolecular strategies of CNC and CMC-Na provides an interesting avenue for androgenetic alopecia treatment.
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Affiliation(s)
- Xuan Pang
- School of Life Sciences and Medicine, Shandong University of Technology, Zibo, Shandong 255049, China
| | - Song Han
- School of Life Sciences and Medicine, Shandong University of Technology, Zibo, Shandong 255049, China
| | - Kang Zheng
- School of Life Sciences and Medicine, Shandong University of Technology, Zibo, Shandong 255049, China.
| | - Liu Jiang
- School of Life Sciences and Medicine, Shandong University of Technology, Zibo, Shandong 255049, China; School of Agricultural Engineering and Food Science, Shandong University of Technology, Zibo, Shandong 255049, China.
| | - Jianping Wang
- School of Life Sciences and Medicine, Shandong University of Technology, Zibo, Shandong 255049, China
| | - Shaosong Qian
- School of Life Sciences and Medicine, Shandong University of Technology, Zibo, Shandong 255049, China
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15
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Sousa BP, Lourenço TC, Anchieta CG, Nepel TCM, Filho RM, Da Silva JLF, Doubek G. Direct Evidence of Reversible Changes in Electrolyte and its Interplay with LiO 2 Intermediate in Li-O 2 Batteries. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2306895. [PMID: 38607269 DOI: 10.1002/smll.202306895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Revised: 02/16/2024] [Indexed: 04/13/2024]
Abstract
Lithium-oxygen batteries show promising energy storage potential with high theoretical energy density; however, further investigation of chemical reactions is required. In this study, experimental Raman and theoretical analyzes are performed for a Li-O2 battery with LiClO4/dimethyl sulfoxide (DMSO) electrolyte and carbon cathode to understand the role of intermediate species in the reactional mechanism of the cell using a high donor number solvent. Operando Raman results reveal reversible changes in the DMSO bands, in addition to the formation and decomposition of Li2O2. On discharge, a decrease in DMSO polarizability is observed and bands of DMSO-Li+-anion interactions are evidenced and supported by ab initio density functional theory (DFT) calculations. Molecular dynamics (MD) force field simulations and operando Raman show that DMSO interacts with LiO2(sol), highlighting the stability of the electrolyte compared to the interaction with reactiveO 2 - ${\rm O}_2^{-}$ . On charging, the presence of Li+ indicates the formation of a lithium-deficient phase, followed by the release of Li+ and oxygen. Therefore, this study contributes to understanding the discharge/charge chemistry of a Li-O2 cell, employing a common carbon cathode and DMSO electrolyte. The combination of a simple characterization technique in operando mode and theoretical studies provides essential information on the mechanism of Li-O2 system.
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Affiliation(s)
- Bianca P Sousa
- Advanced Energy Storage Division Center for Innovation on New Energies (CINE)Laboratory of Advanced Batteries, School of Chemical Engineering, University of Campinas, Campinas, 13083-852, Brazil
| | - Tuanan C Lourenço
- São Carlos Institute of Chemistry, University of São Paulo, P.O. Box 780, São Carlos, São Paulo, 13560-970, Brazil
| | - Chayene G Anchieta
- Swiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen PSI, 5232, Switzerland
| | - Thayane C M Nepel
- Advanced Energy Storage Division Center for Innovation on New Energies (CINE)Laboratory of Advanced Batteries, School of Chemical Engineering, University of Campinas, Campinas, 13083-852, Brazil
| | - Rubens M Filho
- Advanced Energy Storage Division Center for Innovation on New Energies (CINE)Laboratory of Advanced Batteries, School of Chemical Engineering, University of Campinas, Campinas, 13083-852, Brazil
| | - Juarez L F Da Silva
- São Carlos Institute of Chemistry, University of São Paulo, P.O. Box 780, São Carlos, São Paulo, 13560-970, Brazil
| | - Gustavo Doubek
- Advanced Energy Storage Division Center for Innovation on New Energies (CINE)Laboratory of Advanced Batteries, School of Chemical Engineering, University of Campinas, Campinas, 13083-852, Brazil
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16
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Lei J, Tian X, Wang J, Herbers S, Li M, Gao T, Zou S, Grabow JU, Gou Q. How Nonpolar CO 2 Aggregates on Cycloalkenes: A Case Study with Cyclopentene-(CO 2) 1-3 Clusters. J Phys Chem Lett 2024; 15:7597-7602. [PMID: 39028941 DOI: 10.1021/acs.jpclett.4c01737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/21/2024]
Abstract
This study explores the molecular clusters of cyclopentene (CPE) with one to three CO2 molecules (CPE-(CO2)1-3) through their jet-cooled rotational spectra using Fourier transform microwave spectroscopy with supplementary quantum chemical calculations. The assembly of CPE-(CO2)1-3 clusters is predominantly driven by tetrel bonding networks, notably C···π(C═C) and C···O interactions, with additional stabilization from weak C─H(CH2)···C═O hydrogen bonds. Critically, the dispersive forces play a pivotal role in stabilizing CO2 aggregation on CPE, eclipsing the effects of electrostatic and orbital interactions. This highlights the complex balance of forces that govern the formation and stabilization of these molecular clusters. Our findings offer precise insights into noncovalent interactions that could enhance atmospheric chemistry models and sustain climate science through informed environmental chemistry strategies.
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Affiliation(s)
- Juncheng Lei
- Department of Chemistry, School of Chemistry and Chemical Engineering, Chongqing University, Daxuecheng South Rd. 55, 401331 Chongqing, China
| | - Xiao Tian
- Department of Chemistry, School of Chemistry and Chemical Engineering, Chongqing University, Daxuecheng South Rd. 55, 401331 Chongqing, China
| | - Juan Wang
- Department of Chemistry, School of Chemistry and Chemical Engineering, Chongqing University, Daxuecheng South Rd. 55, 401331 Chongqing, China
| | - Sven Herbers
- Institut für Physikalische Chemie & Elektrochemie Leibniz, Universität Hannover, 30167 Hannover, Germany
| | - Meng Li
- Institut für Physikalische Chemie & Elektrochemie Leibniz, Universität Hannover, 30167 Hannover, Germany
| | - Tianyue Gao
- Department of Chemistry, School of Chemistry and Chemical Engineering, Chongqing University, Daxuecheng South Rd. 55, 401331 Chongqing, China
| | - Siyu Zou
- Department of Chemistry, School of Chemistry and Chemical Engineering, Chongqing University, Daxuecheng South Rd. 55, 401331 Chongqing, China
| | - Jens-Uwe Grabow
- Institut für Physikalische Chemie & Elektrochemie Leibniz, Universität Hannover, 30167 Hannover, Germany
| | - Qian Gou
- Department of Chemistry, School of Chemistry and Chemical Engineering, Chongqing University, Daxuecheng South Rd. 55, 401331 Chongqing, China
- Chongqing Key Laboratory of Chemical Theory and Mechanism, Daxuecheng South Rd. 55, 401331 Chongqing, China
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17
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Zhong L, Wang Z, Ye X, Cui J, Wang Z, Jia S. Molecular simulations guide immobilization of lipase on nest-like ZIFs with regulatable hydrophilic/hydrophobic surface. J Colloid Interface Sci 2024; 667:199-211. [PMID: 38636222 DOI: 10.1016/j.jcis.2024.04.075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 03/24/2024] [Accepted: 04/12/2024] [Indexed: 04/20/2024]
Abstract
The catalytic performance of immobilized lipase is greatly influenced by functional support, which attracts growing interest for designing supports to achieve their promotive catalytic activity. Many lipases bind strongly to hydrophobic surfaces where they undergo interfacial activation. Herein, the behavioral differences of lipases with distinct lid structures on interfaces of varying hydrophobicity levels were firstly investigated by molecular simulations. It was found that a reasonable hydrophilic/hydrophobic surface could facilitate the lipase to undergo interfacial activation. Building on these findings, a novel "nest"-like superhydrophobic ZIFs (ZIFN) composed of hydrophobic ligands was prepared for the first time and used to immobilize lipase from Aspergillus oryzae (AOL@ZIFN). The AOL@ZIFN exhibited 2.0-folds higher activity than free lipase in the hydrolysis of p-Nitrophenyl palmitate (p-NPP). Especially, the modification of superhydrophobic ZIFN with an appropriate amount of hydrophilic tannic acid can significantly improve the activity of the immobilized lipase (AOL@ZIFN-TA). The AOL@ZIFN-TA exhibited 30-folds higher activity than free lipase, and still maintained 82% of its initial activity after 5 consecutive cycles, indicating good reusability. These results demonstrated that nanomaterials with rational arrangement of the hydrophilic/hydrophobic surface could facilitate the lipase to undergo interfacial activation and improve its activity, displaying the potential of the extensive application.
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Affiliation(s)
- Le Zhong
- State Key Laboratory of Food Nutrition and Safety, Laboratory of Industrial Fermentation Microbiology, Ministry of Education, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin Economic and Technological Development Area (TEDA), Tianjin 300457, PR China
| | - Zhongjie Wang
- State Key Laboratory of Food Nutrition and Safety, Laboratory of Industrial Fermentation Microbiology, Ministry of Education, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin Economic and Technological Development Area (TEDA), Tianjin 300457, PR China
| | - Xiaohong Ye
- State Key Laboratory of Food Nutrition and Safety, Laboratory of Industrial Fermentation Microbiology, Ministry of Education, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin Economic and Technological Development Area (TEDA), Tianjin 300457, PR China
| | - Jiandong Cui
- State Key Laboratory of Food Nutrition and Safety, Laboratory of Industrial Fermentation Microbiology, Ministry of Education, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin Economic and Technological Development Area (TEDA), Tianjin 300457, PR China.
| | - Ziyuan Wang
- State Key Laboratory of Food Nutrition and Safety, Laboratory of Industrial Fermentation Microbiology, Ministry of Education, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin Economic and Technological Development Area (TEDA), Tianjin 300457, PR China.
| | - Shiru Jia
- State Key Laboratory of Food Nutrition and Safety, Laboratory of Industrial Fermentation Microbiology, Ministry of Education, Tianjin University of Science and Technology, No. 29, 13th Avenue, Tianjin Economic and Technological Development Area (TEDA), Tianjin 300457, PR China
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18
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Tannir S, Pan Y, Josephs N, Cunningham C, Hendrick NR, Beckett A, McNeely J, Beeler A, Jeffries-El M, Kolaczyk ED. Predicting Emission Wavelengths in Benzobisoxazole-Based OLEDs with Gradient Boosted Ensemble Models. J Phys Chem A 2024; 128:6116-6123. [PMID: 39008894 DOI: 10.1021/acs.jpca.4c00077] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/17/2024]
Abstract
We demonstrate the use of gradient-boosted ensemble models that accurately predict emission wavelengths in benzobis[1,2-d:4,5-d']oxazole (BBO) based fluorescent emitters. We have curated a database of 50 molecules from previously published data by the Jeffries-EL group using density functional theory (DFT) computed ground and excited state features. We consider two machine learning (ML) models based on (i) whole cruciform molecules and (ii) their constituent fragment molecules. Both ML models provide accurate predictions with root-mean-square errors between 30 and 36 nm, competitive with state-of-the-art deep learning models trained on orders of magnitude more molecules, and this accuracy holds even when tested on four new BBO emitters unseen by the models. We also provide an interpretable feature importance analysis and discuss the relevant relationships between DFT and changes in predicted emission wavelength.
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Affiliation(s)
- Shambhavi Tannir
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
| | - Yuning Pan
- Department of Mathematics and Statistics, Boston University, Boston, Massachusetts 02215, United States
| | - Nathaniel Josephs
- Department of Statistics, North Carolina State University, Raleigh, North Carolina 27695, United States
| | | | - Nathan R Hendrick
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
| | - Annie Beckett
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
| | - James McNeely
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
| | - Aaron Beeler
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
| | - Malika Jeffries-El
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
- Division of Material Science and Engineering, Boston University, Boston, Massachusetts 02215, United States
| | - Eric D Kolaczyk
- Department of Mathematics and Statistics, Boston University, Boston, Massachusetts 02215, United States
- Department of Mathematics and Statistics, McGill University, Montreal, QC H3A 0G4, Canada
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19
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Pandey RP, Tiwari B, Sharma N, Giri K, Hussain N. Reactivity Switch in Glycal Dienes toward Different Nucleophiles: Mechanistic Insight and Applications toward the Synthesis of Naphthalene-Fused Pyran Derivatives. J Org Chem 2024. [PMID: 39090971 DOI: 10.1021/acs.joc.4c01210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/04/2024]
Abstract
The stereo- and regioselective formation of chiral molecules is an interesting and important topic in organic synthesis due to its wide applicability and intricacy during synthesis. Herein, we disclose a method for the selective functionalization of glycal dienes for synthesizing different glycosides and branched sugars stereo- and regioselectively. The methodology is broad regarding the substrate scope in which various nucleophiles and glycals were explored. Furthermore, we delve into converting the synthesized products into naphthalene-fused pyran derivatives, achieved through a 4 + 2 cycloaddition followed by aromatization. Additionally, we conducted density functional theory studies to gain insight into the formation of regioselective products when different nucleophiles were employed.
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Affiliation(s)
- Ram Pratap Pandey
- Department of Medicinal Chemistry, Institute of Medical Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
| | - Bindu Tiwari
- Department of Medicinal Chemistry, Institute of Medical Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
| | - Navneet Sharma
- Department of Computational Sciences, Central University of Punjab, Bathinda, Punjab 151401, India
| | - Kousik Giri
- Department of Computational Sciences, Central University of Punjab, Bathinda, Punjab 151401, India
| | - Nazar Hussain
- Department of Medicinal Chemistry, Institute of Medical Sciences, Banaras Hindu University, Varanasi, Uttar Pradesh 221005, India
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20
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Kaya MO, Demirci T, Musatat AB, Özdemir O, Sönmez F, Kaya Y, Arslan M. Rabbit muscle pyruvate kinase activators: Synthesis, molecular docking and theoretical studies of N-substituted sulfonamide derivatives. Int J Biol Macromol 2024; 274:133184. [PMID: 38925176 DOI: 10.1016/j.ijbiomac.2024.133184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Revised: 06/01/2024] [Accepted: 06/13/2024] [Indexed: 06/28/2024]
Abstract
Pyruvate kinase (PK) activators have potential therapeutic applications in diseases such as sickle cell anemia. In this study, N-Substituted sulfonamide derivatives of 1,4-dihydropyridines were synthesized and evaluated as PK activators in vitro and using molecular docking studies. The compounds were synthesized by reacting dicarbonyl compounds with ammonium acetate, 5-nitrobenzaldehyde, and alumina sulfuric acid (ASA), followed by reduction and sulfonylation. The structures of the compounds were analyzed using spectroscopic techniques. DFT calculations provided insights into the electronic properties. Molecular docking of the compounds into the active site of PK showed favorable binding interactions. ADME evaluation indicated suitable solubility, BBB permeation, and lack of CYP450 inhibition. Overall, this study demonstrates the potential of new hybrid 1,4-dihydropyridine substituted sulfonamides as PK activators for further development. According to AC50 values, the compound (DTSF7, 0.97μM) is about 100-fold higher affective than the clinically used sulfonamide compound (AC50 = 90μM) for PK.
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Affiliation(s)
- Mustafa Oğuzhan Kaya
- Chemistry, Faculty of Arts and Science, Kocaeli University, 41001 Kocaeli, Turkey.
| | - Tuna Demirci
- Scientific and Technological Research Laboratory, Düzce University, 81620 Düzce, Turkey
| | | | - Oğuzhan Özdemir
- Veterinary Science Department, Technical Sciences Vocational School, Batman University, 72000 Batman, Turkey
| | - Fatih Sönmez
- Pharmacy Services Department, Pamukova Vocational School, Sakarya University of Applied Sciences, 54900 Sakarya, Turkey
| | - Yeşim Kaya
- Chemistry, Faculty of Arts and Science, Kocaeli University, 41001 Kocaeli, Turkey
| | - Mustafa Arslan
- Chemistry, Faculty of Sciences, Sakarya University, 54050, Sakarya, Turkey
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21
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Lawson SE, Roberts RJ, Leznoff DB, Warren JJ. Dramatic Improvement of Homogeneous Carbon Dioxide and Bicarbonate Electroreduction Using a Tetracationic Water-Soluble Cobalt Phthalocyanine. J Am Chem Soc 2024. [PMID: 39083751 DOI: 10.1021/jacs.4c04878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/02/2024]
Abstract
Electrochemical conversion of carbon dioxide (CO2) offers the opportunity to transform a greenhouse gas into valuable starting materials, chemicals, or fuels. Since many CO2 capture strategies employ aqueous alkaline solutions, there is interest in catalyst systems that can act directly on such capture solutions. Herein, we demonstrate new catalyst designs where the electroactive molecules readily mediate the CO2-to-CO conversion in aqueous solutions between pH 4.5 and 10.5. Likewise, the production of CO directly from 2 M KHCO3 solutions (pH 8.2) is possible. The improved molecular architectures are based on cobalt(II) phthalocyanine and contain four cationic trimethylammonium groups that confer water solubility and contribute to the stabilization of activated intermediates via a concentrated positive charge density around the active core. Turnover frequencies larger than 103 s-1 are possible at catalyst concentrations of down to 250 nM in CO2-saturated solutions. The observed rates are substantially larger than the related cobalt phthalocyanine-containing catalysts. Density functional theory calculations support the idea that the excellent catalytic properties are attributed to the ability of the cationic groups to stabilize CO2-bound reduced intermediates in the catalytic cycle. The homogeneous, aqueous CO2 reduction that these molecules perform opens new frontiers for further development of the CoPc platform and sets a greatly improved baseline for CoPc-mediated CO2 upconversion. Ultimately, this discovery uncovers a strategy for the generation of platforms for practical CO2 reduction catalysts in alkaline solutions.
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Affiliation(s)
- Scheryn E Lawson
- Department of Chemistry, Simon Fraser University, 8888 University Drive Burnaby BC, Burnaby V5A1S6, Canada
| | - Ryan J Roberts
- Department of Chemistry, Simon Fraser University, 8888 University Drive Burnaby BC, Burnaby V5A1S6, Canada
| | - Daniel B Leznoff
- Department of Chemistry, Simon Fraser University, 8888 University Drive Burnaby BC, Burnaby V5A1S6, Canada
| | - Jeffrey J Warren
- Department of Chemistry, Simon Fraser University, 8888 University Drive Burnaby BC, Burnaby V5A1S6, Canada
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22
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Pierini A, Piacentini V, Gómez-Urbano JL, Balducci A, Brutti S, Bodo E. A Polarizable Forcefields for Glyoxal Acetals as Electrolyte Components for Lithium-Ion Batteries. ChemistryOpen 2024:e202400134. [PMID: 39086036 DOI: 10.1002/open.202400134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2024] [Revised: 06/14/2024] [Indexed: 08/02/2024] Open
Abstract
In this work we have derived the parameters of an AMOEBA-like polarizable forcefield for electrolytes based on tetramethoxy and tetraethoxy-glyoxal acetals, and propylene carbonate. The resulting forcefield has been validated using both ab-initio data and the experimental properties of the fluids. Using molecular dynamics simulations, we have investigated the structural features and the solvation properties of both the neat liquids and of the corresponding 1 M LiTFSI electrolytes at the molecular level. We present a detailed analysis of the Li ion solvation shells, of their structure and highlight the different behavior of the solvents in terms of their molecular structure and coordinating features.
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Affiliation(s)
- Adriano Pierini
- Department of Chemistry, University of Rome La Sapienza, P. Aldo Moro 5, 00185, Rome, Italy
| | - Vanessa Piacentini
- Department of Chemistry, University of Rome La Sapienza, P. Aldo Moro 5, 00185, Rome, Italy
| | - Juan Luis Gómez-Urbano
- Institute for Technical Chemistry and Environmental Chemistry, Friedrich-Schiller University Jena, Philosophenweg 7a, 07743, Jena, Germany
- Center for Energy and Environmental Chemistry Jena (CEEC), Friedrich-Schiller University Jena, Philosophenweg 7a, 07743, Jena, Germany
| | - Andrea Balducci
- Institute for Technical Chemistry and Environmental Chemistry, Friedrich-Schiller University Jena, Philosophenweg 7a, 07743, Jena, Germany
- Center for Energy and Environmental Chemistry Jena (CEEC), Friedrich-Schiller University Jena, Philosophenweg 7a, 07743, Jena, Germany
| | - Sergio Brutti
- Department of Chemistry, University of Rome La Sapienza, P. Aldo Moro 5, 00185, Rome, Italy
- Istituto dei Sistemi Complessi, Consiglio Nazionale delle Ricerche, P. Aldo Moro 5, 00185, Rome, Italy
| | - Enrico Bodo
- Department of Chemistry, University of Rome La Sapienza, P. Aldo Moro 5, 00185, Rome, Italy
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23
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Terek S, Milovanović M. Ab initio multireference calculation of electronic spectra of the osmium complexes, [Os(bpy) 3 ] 2 + and [Os(phen) 3 ] 2 + . J Comput Chem 2024; 45:1750-1761. [PMID: 38647342 DOI: 10.1002/jcc.27372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2024] [Revised: 03/22/2024] [Accepted: 04/03/2024] [Indexed: 04/25/2024]
Abstract
The spin-orbit coupling corrected absorption spectra of osmium complexes, [Os(bpy) 3 ] 2 + and [Os(phen) 3 ] 2 + , were calculated by using ab initio multireference perturbation method (NEVPT2) with relativistic effects taken into account throughout ZORA approximation and corresponding all-electron basis sets. For the same purpose, the time-dependent DFT techniques were used. A very good agreement between NEVPT2 and experimental spectra should be highlighted, especially for the MLCT transitions that occur in visible and near-UV regions ( 16 , 000 - 33 , 000 cm - 1 ). Moreover, the present study offers description of excited states of titled osmium complexes and their spectra interpretation using molecular orbitals.
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Affiliation(s)
- Saša Terek
- Faculty of Physical Chemistry, University of Belgrade, Belgrade, Serbia
| | - Milan Milovanović
- Faculty of Physical Chemistry, University of Belgrade, Belgrade, Serbia
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24
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Gera R, De P, Singh KK, Jannuzzi SAV, Mohanty A, Velasco L, Kulbir, Kumar P, Marco JF, Nagarajan K, Pecharromán C, Rodríguez-Pascual PM, DeBeer S, Moonshiram D, Gupta SS, Dasgupta J. Trapping an Elusive Fe(IV)-Superoxo Intermediate Inside a Self-Assembled Nanocage in Water at Room Temperature. J Am Chem Soc 2024. [PMID: 39078020 DOI: 10.1021/jacs.4c05849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/31/2024]
Abstract
Molecular cavities that mimic natural metalloenzymes have shown the potential to trap elusive reaction intermediates. Here, we demonstrate the formation of a rare yet stable Fe(IV)-superoxo intermediate at room temperature subsequent to dioxygen binding at the Fe(III) site of a (Et4N)2[FeIII(Cl)(bTAML)] complex confined inside the hydrophobic interior of a water-soluble Pd6L412+ nanocage. Using a combination of electron paramagnetic resonance, Mössbauer, Raman/IR vibrational, X-ray absorption, and emission spectroscopies, we demonstrate that the cage-encapsulated complex has a Fe(IV) oxidation state characterized by a stable S = 1/2 spin state and a short Fe-O bond distance of ∼1.70 Å. We find that the O2 reaction in confinement is reversible, while the formed Fe(IV)-superoxo complex readily reacts when presented with substrates having weak C-H bonds, highlighting the lability of the O-O bond. We envision that such optimally trapped high-valent superoxos can show new classes of reactivities catalyzing both oxygen atom transfer and C-H bond activation reactions.
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Affiliation(s)
- Rahul Gera
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Mumbai 400005, India
- Department of Education in Science and Mathematics, Regional Institute of Education - Mysuru, NCERT, Mysuru 570006, India
| | - Puja De
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal 741246, India
| | - Kundan K Singh
- Chemical Engineering Division, CSIR-National Chemical Laboratory, Pune, Maharashtra 411008, India
- Chemistry Department, Indian Institute of Technology, Dharwad 580007, India
| | - Sergio A V Jannuzzi
- Department of Inorganic Spectroscopy, Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, Mülheim an der Ruhr 45470, Germany
| | - Aisworika Mohanty
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Mumbai 400005, India
| | - Lucia Velasco
- Instituto de Ciencia de Materiales de Madrid Consejo Superior de Investigaciones Científicas Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Kulbir
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Tirupati 517507, India
| | - Pankaj Kumar
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Tirupati 517507, India
| | - J F Marco
- Instituto de Quimica Fisica Blas Cabrera, Consejo Superior de Investigaciones Científicas, Serrano 119, Madrid 28006, Spain
| | - Kalaivanan Nagarajan
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Mumbai 400005, India
| | - Carlos Pecharromán
- Instituto de Ciencia de Materiales de Madrid Consejo Superior de Investigaciones Científicas Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - P M Rodríguez-Pascual
- Instituto de Ciencia de Materiales de Madrid Consejo Superior de Investigaciones Científicas Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Serena DeBeer
- Department of Inorganic Spectroscopy, Max Planck Institute for Chemical Energy Conversion, Stiftstr. 34-36, Mülheim an der Ruhr 45470, Germany
| | - Dooshaye Moonshiram
- Instituto de Ciencia de Materiales de Madrid Consejo Superior de Investigaciones Científicas Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Sayam Sen Gupta
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal 741246, India
| | - Jyotishman Dasgupta
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Mumbai 400005, India
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25
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Malme JT, Weaver JN, Girolami GS, Vura-Weis J. Picosecond Metal-to-Ligand Charge-Transfer Deactivation in Co(ppy) 3 via Jahn-Teller Distortion. Inorg Chem 2024; 63:13825-13830. [PMID: 39023554 DOI: 10.1021/acs.inorgchem.4c01959] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/20/2024]
Abstract
The excited-state dynamics of fac-Co(ppy)3, where ppy = 2-[2-(pyridyl)phenyl], are measured with femtosecond UV-vis transient absorption spectroscopy. The initial state is confirmed with spectroelectrochemistry to have significant metal-to-ligand charge transfer (MLCT) character, unlike other Co complexes that generally have ligand-to-metal charge transfer or ligand-field transitions in this energy range. Ground-state recovery occurs in 8.65 ps in dichloromethane. Density functional theory calculations show that the MLCT state undergoes Jahn-Teller distortion and converts to a five-coordinate triplet metal-centered state in which one Co-N bond is broken. The results highlight a potential pitfall of heteroleptic bidentate ligands when designing strong-field ligands for transition-metal chromophores.
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Affiliation(s)
- Justin T Malme
- Department of Chemistry, University of Illinois at Urbana-Champaign, Champaign, Illinois 61801, United States
| | - Jenelle N Weaver
- Department of Chemistry, University of Illinois at Urbana-Champaign, Champaign, Illinois 61801, United States
| | - Gregory S Girolami
- Department of Chemistry, University of Illinois at Urbana-Champaign, Champaign, Illinois 61801, United States
| | - Josh Vura-Weis
- Department of Chemistry, University of Illinois at Urbana-Champaign, Champaign, Illinois 61801, United States
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26
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Dos Santos AM, da Costa CHS, Silva PHA, Skaf MS, Lameira J. Exploring the Reaction Mechanism of Polyethylene Terephthalate Biodegradation through QM/MM Approach. J Phys Chem B 2024. [PMID: 39072475 DOI: 10.1021/acs.jpcb.4c02207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2024]
Abstract
The enzyme PETase fromIdeonella sakaiensis (IsPETase) strain 201-F6 can catalyze the hydrolysis of polyethylene terephthalate (PET), mainly converting it into mono(2-hydroxyethyl) terephthalic acid (MHET). In this study, we used quantum mechanics/molecular mechanics (QM/MM) simulations to explore the molecular details of the catalytic reaction mechanism of IsPETase in the formation of MHET. The QM region was described with AM1d/PhoT and M06-2X/6-31+G(d,p) potential. QM/MM simulations unveil the complete enzymatic PET hydrolysis mechanism and identify two possible reaction pathways for acylation and deacylation steps. The barrier obtained at M06-2X/6-31+G(d,p)/MM potential for the deacylation step corresponds to 20.4 kcal/mol, aligning with the experimental value of 18 kcal/mol. Our findings indicate that deacylation is the rate-limiting step of the process. Furthermore, per-residue interaction energy contributions revealed unfavorable contributions to the transition state of amino acids located at positions 200-230, suggesting potential sites for targeted mutations. These results can contribute to the development of more active and selective enzymes for PET depolymerization.
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Affiliation(s)
- Alberto M Dos Santos
- Institute of Chemistry and Centre for Computer in Engineering and Sciences, University of Campinas (UNICAMP), Campinas 13084-862, Sao Paulo, Brazil
| | - Clauber H S da Costa
- Institute of Chemistry and Centre for Computer in Engineering and Sciences, University of Campinas (UNICAMP), Campinas 13084-862, Sao Paulo, Brazil
| | - Pedro H A Silva
- Institute of Biological Sciences, Federal University of Para, 66075-110 Belem, Para, Brazil
| | - Munir S Skaf
- Institute of Chemistry and Centre for Computer in Engineering and Sciences, University of Campinas (UNICAMP), Campinas 13084-862, Sao Paulo, Brazil
| | - Jerônimo Lameira
- Institute of Biological Sciences, Federal University of Para, 66075-110 Belem, Para, Brazil
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27
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Ramakrishnan S, Anjukandi P. Superoxide to Peroxide Interconversion in Ni-TMC Complexes: The Significance of Structure and Spin States. Inorg Chem 2024. [PMID: 39072391 DOI: 10.1021/acs.inorgchem.4c02568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2024]
Abstract
A deeper comprehension of the characteristics of metal-superoxide and metal-peroxide chemical species is imperative, considering their pivotal functions in oxygen transport, enzymatic activation, and catalytic oxygenations. O2 activation is mediated by the interconversion of superoxide and peroxide species. Even though there are multiple studies on metal-superoxide and -peroxide intermediates, robust examples of their interconversion processes are scarce synthetically. For example, Ni-superoxide/peroxide complexes have been characterized with N-Tetramethylated Cyclam (TMC) ligands with different ring sizes, i.e., Nickel(II)-superoxide complex is characterized with 14-TMC while Nickel(III)-peroxide complex with 12-TMC. Later, both complexes were obtained with 13-TMC ligand by employing different bases; interestingly, no evidence of interconversion between them was identified. What are the factors influencing these processes and why is this preference? We attempt a computational analysis of this issue and provide arguments based on our conclusions. 2-dimensional potential energy scan is performed on the 12-TMC, 13-TMC, and 14-TMC systems to identify the reaction path connecting superoxide and peroxide species. Analyses indicate that structure and spin states play a significant role in determining the probability of interconversion. The superoxide-peroxide interconversion process appears to be bound by their propensity for distinct structural features and spin states.
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Affiliation(s)
- Shyama Ramakrishnan
- Department of Chemistry, Indian Institute of Technology, Kanjikode, Palakkad, Kerala 678623, India
| | - Padmesh Anjukandi
- Department of Chemistry, Indian Institute of Technology, Kanjikode, Palakkad, Kerala 678623, India
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28
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Shu Q, Yang F, Lin Z, Yang L, Wang Z, Ye D, Dong Z, Huang P, Wang W. Molecular understanding of the self-assembly of an N-isopropylacrylamide delivery system for the loading and temperature-dependent release of curcumin. Commun Chem 2024; 7:163. [PMID: 39080473 PMCID: PMC11289375 DOI: 10.1038/s42004-024-01249-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2024] [Accepted: 07/22/2024] [Indexed: 08/02/2024] Open
Abstract
Global changes and drug abuse are forcing humanity to face various disease problems, and alternative therapies with safe natural substances have important research value. This paper combines various techniques in quantum chemical calculations and molecular simulations to provide molecular-level insight into the dynamics of the self-assembly of N-isopropylacrylamide (NIPAM) for loading curcumin (CUR). The results indicate that increasing the chain length of NIPAM molecules reduces their efficiency in encapsulating and locking CUR, and electrostatic interactions and van der Waals interactions are the main driving forces behind the evolution of system configurations in these processes. The isopropyl groups of NIPAM and the two phenolic ring planes of CUR are the main contact areas for the interaction between the two types of molecules. The thermosensitive effect of NIPAM can alter the distribution of isopropyl groups in NIPAM molecules around CUR. As a result, when the temperature rises from ambient temperature (300 K) to human characteristic temperature (310 K), the NIPAM-CUR interactions and radial distribution functions suggest that body temperature is more suitable for drug release. Our findings offer a vital theoretical foundation and practical guidance for researchers to develop temperature-sensitive drug delivery systems tailored for CUR, addressing its clinical application bottleneck.
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Affiliation(s)
- Qijiang Shu
- Institute of Information, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China.
- Yunnan Traditional Chinese Medicine Prevention and Treatment Engineering Research Center, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China.
- Yunnan Key Laboratory of Southern Medicinal Utilization, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China.
| | - Fuhua Yang
- Institute of Information, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China
| | - Zedong Lin
- School of Materials Science and Engineering, Taizhou University, Taizhou, 318000, Zhejiang, China
- Guangdong Provincial Key Lab of Nano-Micro Materials Research, School of Chemical Biology and Biotechnology, Shenzhen Graduate School, Peking University, Shenzhen, 518055, Guangdong, China
| | - Linjing Yang
- Institute of Information, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China
| | - Zhan Wang
- Institute of Information, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China
| | - Donghai Ye
- Institute of Information, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China
| | - Zhi Dong
- Yunnan Key Laboratory of Southern Medicinal Utilization, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China
- College of Chinese Materia Medica, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China
| | - Pengru Huang
- Guangxi Key Laboratory of Information Materials and Guangxi Collaborative Innovation Center of Structure and Property for New Energy and Materials, School of Material Science & Engineering, Guilin University of Electronic Technology, Guilin, 541004, Guangxi, China
| | - Wenping Wang
- Yunnan Key Laboratory of Southern Medicinal Utilization, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China.
- College of Chinese Materia Medica, Yunnan University of Chinese Medicine, Kunming, 650500, Yunnan, China.
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29
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Chakraborty B, González-Pinardo D, Fernández I, Phukan AK. Carbene-Decorated Geometrically Constrained Borylenes for Bond Activations. Inorg Chem 2024. [PMID: 39072652 DOI: 10.1021/acs.inorgchem.4c01697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2024]
Abstract
While metal-ligand cooperativity is well-known, studies on element-ligand cooperativity involving main group species are comparatively much less explored. In this study, we computationally designed a few geometrically constrained borylenes supported by different carbenes. Our density functional theory studies indicate that they possess enhanced nucleophilicity as well as electrophilicity, thus rendering them promising candidates for exhibiting borylene-ligand cooperativity. The cooperation between the boron and adjacent carbene centers facilitates different bond activation processes, including the cycloaddition of acetylene across the boron-carbene bond as well as B-H/Si-H bond activation reactions, which have been analyzed in detail. To the best of our knowledge, the borylenes proposed in this study represent the first examples of theoretically proposed geometrically constrained bis(carbene)-stabilized borylenes capable of cooperative activation of enthalpically strong bonds.
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Affiliation(s)
- Barsha Chakraborty
- Department of Chemical Sciences, Tezpur University, Napaam 784028, Assam, India
| | - Daniel González-Pinardo
- Departamento de Química Orgánica and Centro de Innovación en Química Avanzada (ORFEO-CINQA), Facultad de Ciencias Químicas, Universidad Complutense de Madrid, 28040 Madrid, Spain
| | - Israel Fernández
- Departamento de Química Orgánica and Centro de Innovación en Química Avanzada (ORFEO-CINQA), Facultad de Ciencias Químicas, Universidad Complutense de Madrid, 28040 Madrid, Spain
| | - Ashwini K Phukan
- Department of Chemical Sciences, Tezpur University, Napaam 784028, Assam, India
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30
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Yang Y, Yu J, Jiang X, Lai K, Miao J. Insight into the interaction between amino acids and SO 2: Detailed bonding modes. J Mol Model 2024; 30:291. [PMID: 39073631 DOI: 10.1007/s00894-024-06083-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Accepted: 07/15/2024] [Indexed: 07/30/2024]
Abstract
CONTEXT Amino acids are a highly effective and environmentally friendly adsorbent for SO2. However, there has been no comprehensive study of the binding modes between amino acids and SO2 at the molecular level. In this paper, the binding modes of three amino acids (Asp, Lys, and Val) with SO2 are studied comprehensively and in detail using quantum chemical calculations. The results indicate that each amino acid has multiple binding modes: 22 for Asp, 49 for Lys, and 10 for Val. Both the amino and carboxyl groups in amino acids, as well as those in side chains, can serve as binding sites for chalcogen bonds. The binding energies range from - 6.42 to - 1.06 kcal/mol for Asp, - 12.43 to - 1.63 kcal/mol for Lys, and - 7.42 to - 0.60 kcal/mol for Val. Chalcogen and hydrogen bonds play a crucial role in the stronger binding modes. The chalcogen bond is the strongest when interacting with an amino group, with an adiabatic force constant of 0.475 mDyn/Å. Energy decomposition analysis indicates that the interaction is primarily electrostatic attraction, with the orbital and dispersive interactions dependent on the binding mode. METHODS Amino acids and complexes of amino acids with SO2 were used to do semi-empirical MD using Molclus combined with xtb at the GFN2 level. Optimization and frequency calculations of the structures were conducted using density-functional theory (DFT) B3LYP/6-311G* (with DFT-D3 correction). Single-point energy calculations were performed for all structures using DLPNO-CCSD(T)/aug-cc-pVTZ with tightPNO. Further analysis of the structures was conducted using ESP, AIM, IGMH, and sob-EDA to gain a deeper understanding of the interactions between amino acids and SO2.
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Affiliation(s)
- Yue Yang
- College of Food Science and Technology, Shanghai Ocean University, No. 999 Hucheng Huan Road, LinGang New City, Shanghai, 201306, People's Republic of China
| | - Jialing Yu
- College of Oceanography and Ecological Science, Shanghai Ocean University, No. 999 Hucheng Huan Road, LinGang New City, Shanghai, 201306, People's Republic of China
| | - Xiankai Jiang
- School of Sciences, Changzhou Institute of Technology, Changzhou, 213032, People's Republic of China
| | - Keqiang Lai
- College of Food Science and Technology, Shanghai Ocean University, No. 999 Hucheng Huan Road, LinGang New City, Shanghai, 201306, People's Republic of China
| | - Junjian Miao
- College of Food Science and Technology, Shanghai Ocean University, No. 999 Hucheng Huan Road, LinGang New City, Shanghai, 201306, People's Republic of China.
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31
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Werncke CG, Müller I, Weißer K, Limberg C. Divergent Interaction of (Iso)nitriles with a Linear Iron(I) Silylamide─A Combined Structural, Spectroscopic, and Computational Study. Inorg Chem 2024. [PMID: 39066707 DOI: 10.1021/acs.inorgchem.4c02882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2024]
Abstract
Nitriles and isonitriles are important σ-donor ligands in coordination chemistry. Isonitriles also function in low-valent complexes as π-acceptor ligands similar to CO. Herein we present the unusual behavior of the highly reducing, high-spin iron(I) complex [Fe(hmds)2]- toward these compound classes. Rare examples of side-on coordination of nitriles to the metal center are observed. Insights gained by 57Fe Mössbauer spectroscopy as well as DFT and CASSCF calculations give an interplay between the resonance structures of not only an iron(I) π-complex and an iron(III) metallacycle but also point to the importance of an iron(II) nitrile radical anion. For an aromatic isonitrile end-on coordination is observed, which is best described as an iron(I) complex with only minor unpaired spin transfer onto the isonitrile. For aliphatic isonitriles, the selective R-CN bond cleavage occurs and yields stoichiometric mixtures of alkyl iron(II) and cyanido iron(II) complexes. Attempts to isolate presumed (iso)nitrile radical anions void of 3d-metal coordination give for the reaction of an aromatic isonitrile with KC8 facile reductive coupling to the corresponding diamido acetylene.
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Affiliation(s)
- C Gunnar Werncke
- Chemistry Department, Philipps-University Marburg, Hans-Meerwein-Straße 4, D-35043 Marburg, Germany
| | - Igor Müller
- Chemistry Department, Philipps-University Marburg, Hans-Meerwein-Straße 4, D-35043 Marburg, Germany
| | - Kilian Weißer
- Institute of Chemistry, Humboldt-University Berlin, Brook-Taylor-Str. 2, D-13089 Berlin, Germany
| | - Christian Limberg
- Institute of Chemistry, Humboldt-University Berlin, Brook-Taylor-Str. 2, D-13089 Berlin, Germany
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32
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Carder HM, Occhialini G, Bistoni G, Riplinger C, Kwan EE, Wendlandt AE. The sugar cube: Network control and emergence in stereoediting reactions. Science 2024; 385:456-463. [PMID: 39052778 DOI: 10.1126/science.adp2447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2024] [Accepted: 06/07/2024] [Indexed: 07/27/2024]
Abstract
Stereochemical editing strategies have recently enabled the transformation of readily accessible substrates into rare and valuable products. Typically, site selectivity is achieved by minimizing kinetic complexity by using protecting groups to suppress reactivity at undesired sites (substrate control) or by using catalysts with tailored shapes to drive reactivity at the desired site (catalyst control). We propose "network control," a contrasting paradigm that exploits hidden interactions between rate constants to greatly amplify modest intrinsic biases and enable precise multisite editing. When network control is applied to the photochemical isomerization of hexoses, six of the eight possible diastereomers can be selectively obtained. The amplification effect can be viewed as a mesoscale phenomenon between the limiting regimes of kinetic control in simple chemical systems and metabolic regulation in complex biological systems.
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Affiliation(s)
- Hayden M Carder
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Gino Occhialini
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Giovanni Bistoni
- Department of Chemistry, Biology and Biotechnology, University of Perugia, 06123 Perugia, Italy
| | | | | | - Alison E Wendlandt
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
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33
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Yu CP, Chowdhury R, Fu Y, Ghosh P, Zeng W, Mustafa TBE, Grüne J, Walker LE, Congrave DG, Chua XW, Murto P, Rao A, Sirringhaus H, Plasser F, Grey CP, Friend RH, Bronstein H. Near-infrared luminescent open-shell π-conjugated systems with a bright lowest-energy zwitterionic singlet excited state. SCIENCE ADVANCES 2024; 10:eado3476. [PMID: 39047089 PMCID: PMC11268402 DOI: 10.1126/sciadv.ado3476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Accepted: 06/20/2024] [Indexed: 07/27/2024]
Abstract
Open-shell systems with extensive π-conjugation have fascinating properties due to their narrow bandgaps and spin interactions. In this work, we report neutral open-shell di- and polyradical conjugated materials exhibiting intriguing optical and magnetic properties. Our key design advance is the planarized geometry allowing for greater interaction between adjacent spins. This results in absorption and emission in the near infrared at 803 and 1050 nanometers, respectively, and we demonstrate a unique electronic structure where a bright zwitterionic excited state is the lowest-accessible electronic transition. Electron paramagnetic resonance spectroscopy and superconducting quantum interference device measurements reveal that our materials are open-shell singlets with different degrees of spin interactions, dynamics, and antiferromagnetic properties, which likely contributed to the formation of their emissive zwitterionic singlet excited state and near-infrared emission. In addition, our materials show reversible and stable electrochromic switching with more than 500 cycles, indicating their potential for optoelectronic and electrochemical energy storage applications.
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Affiliation(s)
- Craig P. Yu
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
- Department of Physics, Cavendish Laboratory, Cambridge University, Cambridge CB3 0HF, UK
| | - Rituparno Chowdhury
- Department of Physics, Cavendish Laboratory, Cambridge University, Cambridge CB3 0HF, UK
| | - Yao Fu
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
| | - Pratyush Ghosh
- Department of Physics, Cavendish Laboratory, Cambridge University, Cambridge CB3 0HF, UK
| | - Weixuan Zeng
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
| | - Tarig B. E. Mustafa
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
- Department of Physics, Cavendish Laboratory, Cambridge University, Cambridge CB3 0HF, UK
| | - Jeannine Grüne
- Department of Physics, Cavendish Laboratory, Cambridge University, Cambridge CB3 0HF, UK
| | - Lucy E. Walker
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
| | - Daniel G. Congrave
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
| | - Xian Wei Chua
- Department of Physics, Cavendish Laboratory, Cambridge University, Cambridge CB3 0HF, UK
| | - Petri Murto
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
- Department of Physics, Cavendish Laboratory, Cambridge University, Cambridge CB3 0HF, UK
| | - Akshay Rao
- Department of Physics, Cavendish Laboratory, Cambridge University, Cambridge CB3 0HF, UK
| | - Henning Sirringhaus
- Department of Physics, Cavendish Laboratory, Cambridge University, Cambridge CB3 0HF, UK
| | - Felix Plasser
- Department of Chemistry, Loughborough University, Loughborough, LE11 3TU, UK
| | - Clare P. Grey
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
| | - Richard H. Friend
- Department of Physics, Cavendish Laboratory, Cambridge University, Cambridge CB3 0HF, UK
| | - Hugo Bronstein
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, UK
- Department of Physics, Cavendish Laboratory, Cambridge University, Cambridge CB3 0HF, UK
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34
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Ray S, Roy S, Biswas S, Ojha M, Singh NDP. A Molecular Engineering Approach to Achieve Wavelength-Selective Photorelease Using a Dynamic Photocage. Org Lett 2024; 26:6236-6240. [PMID: 39004831 DOI: 10.1021/acs.orglett.4c02194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
We introduce a molecular engineering strategy for wavelength-selective photorelease of alcohols and carboxylic acids, employing a dynamic photocage featuring an (E)-3-(6-acetyl-2-hydroxynaphthalen-1-yl)acrylate moiety. Initially activated by visible light (λ ≥ 410 nm), it releases alcohol, generating a second photocage. Subsequent exposure to shorter wavelengths (λ ≤ 365 nm) selectively releases carboxylic acid, albeit at a reduced rate.
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Affiliation(s)
- Souvik Ray
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal 721302, India
| | - Saikat Roy
- Centre of New Technologies, University of Warsaw, S. Banacha 2c, 02-097 Warsaw, Poland
| | - Suchhanda Biswas
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal 721302, India
| | - Mamata Ojha
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal 721302, India
| | - N D Pradeep Singh
- Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal 721302, India
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35
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Hu Y, Zhao C, Tan W, Li M, Wang Y, Gao R, Chen Z, Jin Z, Hu L, Li Q. Discovery and Optimization of Hsp110 and sGC Dual-Target Regulators for the Treatment of Pulmonary Arterial Hypertension. J Med Chem 2024. [PMID: 39058542 DOI: 10.1021/acs.jmedchem.4c01364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/28/2024]
Abstract
Currently, bifunctional agents with vasodilation and ameliorated vascular remodeling effects provide more advantages for the treatment of pulmonary arterial hypertension (PAH). In this study, we first screened the hit 1 with heat shock protein 110 (Hsp110) inhibition effect from our in-house compound library with soluble guanylate cyclase (sGC) activity. Subsequently, a series of novel bisamide derivatives were designed and synthesized as Hsp110/sGC dual-target regulators based on hit 1. Among them, 17i exhibited optimal Hsp110 and sGC molecular activities as well as remarkable cell malignant phenotypes inhibitory and vasodilatory effects in vitro. Moreover, compared to riociguat, 17i showed superior efficacy in attenuating pulmonary vascular remodeling and right ventricular hypertrophy via Hsp110 suppression in hypoxia-induced PAH rat models (i.g.). Notably, our study successfully demonstrated that the simultaneous regulation of Hsp110 and sGC dual targets was a novel and feasible strategy for PAH therapy, providing a promising lead compound for anti-PAH drug discovery.
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Affiliation(s)
- Yuanbo Hu
- Department of Medicinal Chemistry, Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Diagnostic and Therapeutic Drug Research for Chronic Diseases, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Organ Fibrosis, Changsha 410013, Hunan, China
| | - Congke Zhao
- Department of Medicinal Chemistry, Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Diagnostic and Therapeutic Drug Research for Chronic Diseases, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Organ Fibrosis, Changsha 410013, Hunan, China
| | - Wenhua Tan
- Department of Medicinal Chemistry, Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Diagnostic and Therapeutic Drug Research for Chronic Diseases, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Organ Fibrosis, Changsha 410013, Hunan, China
| | - Mengqi Li
- Department of Medicinal Chemistry, Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Diagnostic and Therapeutic Drug Research for Chronic Diseases, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Organ Fibrosis, Changsha 410013, Hunan, China
| | - Yu Wang
- Department of Medicinal Chemistry, Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Diagnostic and Therapeutic Drug Research for Chronic Diseases, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Organ Fibrosis, Changsha 410013, Hunan, China
| | - Ruizhe Gao
- Key Laboratory of Study and Discovery of Small Targeted Molecules of Hunan Province, Department of Pharmacy, School of Medicine, Hunan Normal University, Changsha 410013, Hunan, China
| | - Zhuo Chen
- Department of Medicinal Chemistry, Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Diagnostic and Therapeutic Drug Research for Chronic Diseases, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Organ Fibrosis, Changsha 410013, Hunan, China
| | - Zhenming Jin
- College of Biology, Hunan University, Changsha 410082, Hunan, China
| | - Liqing Hu
- Key Laboratory of Study and Discovery of Small Targeted Molecules of Hunan Province, Department of Pharmacy, School of Medicine, Hunan Normal University, Changsha 410013, Hunan, China
| | - Qianbin Li
- Department of Medicinal Chemistry, Xiangya School of Pharmaceutical Sciences, Central South University, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Diagnostic and Therapeutic Drug Research for Chronic Diseases, Changsha 410013, Hunan, China
- Hunan Key Laboratory of Organ Fibrosis, Changsha 410013, Hunan, China
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36
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Pliego JR. Hybrid Cluster-Continuum Method for Single-Ion Solvation Free Energy in Acetonitrile Solvent. J Phys Chem A 2024. [PMID: 39052560 DOI: 10.1021/acs.jpca.4c03593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2024]
Abstract
A new hybrid discrete-continuum approach named the cluster-continuum static approximation (CCSA) has been proposed for acetonitrile solvent. The continuum part uses the conductor-like polarizable continuum model for electrostatic and a surface area-dependent term for nonelectrostatic solvation. The CCSA includes only one explicit acetonitrile solvent molecule and a damping function, which makes the CCSA method reduce to pure continuum solvation in the case of weaker potential of mean force for solute-solvent interaction. The performance of the model was tested for 22 anions and 22 cations, including challenge species that cannot be adequately described by pure continuum solvation. A comparison was done with the widely used solvent model density (SMD) model. For anions, the CCSA reduces to pure continuum solvation and the method has the same performance as the SMD model, with a standard deviation of the mean signed error (SD-MSE) of 2.7 kcal mol-1 for both models. However, the CCSA method for cations considerably outperforms the SMD model, with an SD-MSE of 3.3 kcal mol-1 for the former and 8.4 kcal mol-1 for the latter. The method can be automated, and the present study suggests that continuum solvation models could be parameterized taking into account the explicit solvation as proposed in this work.
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Affiliation(s)
- Josefredo R Pliego
- Departamento de Ciências Naturais, Universidade Federal de São João del-Rei, São João del-Rei, Minas Gerais 36301-160, Brazil
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37
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Chamkin AA, Chamkina ES. Assessment of the applicability of DFT methods to [Cp*Rh]-catalyzed hydrogen evolution processes. J Comput Chem 2024. [PMID: 39052232 DOI: 10.1002/jcc.27468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2024] [Revised: 07/04/2024] [Accepted: 07/10/2024] [Indexed: 07/27/2024]
Abstract
The present computational study provides a benchmark of density functional theory (DFT) methods in describing hydrogen evolution processes catalyzed by [Cp*Rh]-containing organometallic complexes. A test set was composed of 26 elementary reactions featuring chemical transformations and bonding situations essential for the field, including the emerging concept of non-innocent Cp* behavior. Reference values were obtained from a highly accurate 3/4 complete basis set and 6/7 complete PNO space extrapolated DLPNO-CCSD(T) energies. The performance of lower-level extrapolation procedures was also assessed. We considered 84 density functionals (DF) (including 13 generalized gradient approximations (GGA), nine meta-GGAs, 33 hybrids, and 29 double-hybrids) and three composite methods (HF-3c, PBEh-3c, and r2SCAN-3c), combined with different types of dispersion corrections (D3(0), D3BJ, D4, and VV10). The most accurate approach is the PBE0-DH-D3BJ (MAD of 1.36 kcal mol-1) followed by TPSS0-D3BJ (MAD of 1.60 kcal mol-1). Low-cost r2SCAN-3c composite provides a less accurate but much faster alternative (MAD of 2.39 kcal mol-1). The widely used Minnesota-family M06-L, M06, and M06-2X DFs should be avoided (MADs of 3.70, 3.94, and 4.01 kcal mol-1, respectively).
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Affiliation(s)
- Aleksandr A Chamkin
- A.N.Nesmeyanov Institute of Organoelement Compounds of Russian Academy of Sciences, Moscow, Russia
| | - Elena S Chamkina
- A.N.Nesmeyanov Institute of Organoelement Compounds of Russian Academy of Sciences, Moscow, Russia
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38
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Fureraj I, Wega J, Balanikas E, Puji Pamungkas KK, Sakai N, Matile S, Vauthey E. Excitation-Wavelength-Dependent Photophysics of a Torsionally Disordered Push-Pull Dye. J Phys Chem Lett 2024:7857-7862. [PMID: 39052969 DOI: 10.1021/acs.jpclett.4c01840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2024]
Abstract
The torsional disorder of conjugated dyes in the electronic ground state can lead to inhomogeneous broadening of the S1 ←S0 absorption band, allowing for the selective photoexcitation of molecules with different amounts of distortion. Here, we investigate how this affects electronic transitions to upper excited states. We show that torsion of a core-alkynylated push-pull dye can have opposite effects on the oscillator strength of its lowest-energy transitions. Consequently, photoselection of planar and twisted molecules can be achieved by exciting in distinct absorption bands. Whereas this has limited effect in liquids due to fast planarization of the excited molecules, it strongly affects the overall photophysics in a polymeric environment, where torsional motion is hindered, allowing for the photoselection of molecules with different fluorescence quantum yields and intersystem-crossing dynamics.
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Affiliation(s)
- Ina Fureraj
- Department of Physical Chemistry, University of Geneva, CH-1211 Geneva, Switzerland
| | - Johannes Wega
- Department of Physical Chemistry, University of Geneva, CH-1211 Geneva, Switzerland
| | - Evangelos Balanikas
- Department of Physical Chemistry, University of Geneva, CH-1211 Geneva, Switzerland
| | | | - Naomi Sakai
- Department of Organic Chemistry, University of Geneva, CH-1211 Geneva, Switzerland
| | - Stefan Matile
- Department of Organic Chemistry, University of Geneva, CH-1211 Geneva, Switzerland
| | - Eric Vauthey
- Department of Physical Chemistry, University of Geneva, CH-1211 Geneva, Switzerland
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39
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Yang Y, Su W, Wang H, Bao X, Liu X, Bo Z, Zhang W. Promotion of Fast and Efficient Singlet Fission Process of PDI Dimers by Selenium Substitution. J Phys Chem B 2024; 128:7219-7226. [PMID: 39007639 DOI: 10.1021/acs.jpcb.4c01744] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
Singlet fission (SF) is a triplet generation mechanism capable of turning a singlet exciton into two triplet excitons. It has the potential to enhance the power conversion efficiency of single-junction solar cells. Perylene diimides (PDIs) are a class of dye molecules with photovoltaic properties and are beginning to receive more and more attention due to their potential for SF. Here, we report a selenium-substituted PDI dimer, Se-PDI-II, and we studied its SF mechanism by using steady-state, transient absorption, and time-resolved photoluminescence spectroscopy. Compared with the unsubstituted dimer PDI-II, we found that the introduction of selenium atoms can suppress excimer emission during the SF process, showing much higher SF efficiency and triplet yield.
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Affiliation(s)
- Yubo Yang
- School of Physics and Astronomy, Applied Optics Beijing Area Major Laboratory, Center for Advanced Quantum Studies, Beijing Normal University, Beijing 100875, China
| | - Wenli Su
- School of Physics and Astronomy, Applied Optics Beijing Area Major Laboratory, Center for Advanced Quantum Studies, Beijing Normal University, Beijing 100875, China
| | - Hang Wang
- College of Textiles & Clothing, State Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, Qingdao 266071, China
| | - Xiaotian Bao
- School of Physics and Astronomy, Applied Optics Beijing Area Major Laboratory, Center for Advanced Quantum Studies, Beijing Normal University, Beijing 100875, China
- CAS Key Laboratory of Standardization and Measurement for Nanotechnology, National Center for Nanoscience and Technology, Beijing 100190, China
| | - Xinfeng Liu
- CAS Key Laboratory of Standardization and Measurement for Nanotechnology, National Center for Nanoscience and Technology, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhishan Bo
- College of Textiles & Clothing, State Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, Qingdao 266071, China
| | - Wenkai Zhang
- School of Physics and Astronomy, Applied Optics Beijing Area Major Laboratory, Center for Advanced Quantum Studies, Beijing Normal University, Beijing 100875, China
- Key Laboratory of Multiscale Spin Physics, Ministry of Education, Beijing Normal University, Beijing 100875, China
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40
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Park G, Wralstad EC, Faginas-Lago N, Qian K, Raines RT, Bistoni G, Cummins CC. Pentaphosphorylation via the Anhydride of Dihydrogen Pentametaphosphate: Access to Nucleoside Hexa- and Heptaphosphates and Study of Their Interaction with Ribonuclease A. ACS CENTRAL SCIENCE 2024; 10:1415-1422. [PMID: 39071052 PMCID: PMC11273453 DOI: 10.1021/acscentsci.4c00835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Revised: 06/18/2024] [Accepted: 06/21/2024] [Indexed: 07/30/2024]
Abstract
Pentametaphosphate is the little studied cyclic pentamer of the metaphosphate ion, [PO3]5 5-. We show that the doubly protonated form of this pentamer can be selectively dehydrated to provide the anhydride [P5O14]3- (1). This trianion is the well-defined condensed phosphate component of a novel reagent for attachment of a pentaphosphate chain to biomolecules all in one go. Here, we demonstrate by extending adenosine monophosphate (AMP) and uridine monophosphate (UMP) to their corresponding nucleoside hexaphosphates, while adenosine diphosphate (ADP) and uridine diphosphate (UDP) are phosphate chain-extended to the corresponding nucleoside heptaphosphates. Such constructs are of interest for their potential biological function with respect to RNA-processing enzymes. Thus, we go on to investigate in detail the interaction of the polyanionic constructs with ribonuclease A, a model protein containing a polycationic active site and for which X-ray crystal structures are relatively straightforward to obtain. This work presents a combined experimental and quantum chemical approach to understanding the interactions of RNase A with the new nucleoside hexa- and heptaphosphate constructs.
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Affiliation(s)
- Gyeongjin Park
- Department
of Chemistry, Massachusetts Institute of
Technology, Cambridge, Massachusetts 02139, United States
| | - Evans C. Wralstad
- Department
of Chemistry, Massachusetts Institute of
Technology, Cambridge, Massachusetts 02139, United States
| | - Noelia Faginas-Lago
- Department
of Chemistry, Biology,and Biotechnology, University of Perugia, 06123, Perugia, Italy
| | - Kevin Qian
- Department
of Chemistry, Massachusetts Institute of
Technology, Cambridge, Massachusetts 02139, United States
| | - Ronald T. Raines
- Department
of Chemistry, Massachusetts Institute of
Technology, Cambridge, Massachusetts 02139, United States
| | - Giovanni Bistoni
- Department
of Chemistry, Biology,and Biotechnology, University of Perugia, 06123, Perugia, Italy
| | - Christopher C. Cummins
- Department
of Chemistry, Massachusetts Institute of
Technology, Cambridge, Massachusetts 02139, United States
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41
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Yao L, Liu J, Zhang F, Wen B, Chi X, Liu Y. Reconstruction of zinc-metal battery solvation structures operating from -50 ~ +100 °C. Nat Commun 2024; 15:6249. [PMID: 39048566 PMCID: PMC11269709 DOI: 10.1038/s41467-024-50219-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2024] [Accepted: 07/01/2024] [Indexed: 07/27/2024] Open
Abstract
Serious solvation effect of zinc ions has been considered as the cause of the severe side reactions (hydrogen evolution, passivation, dendrites, and etc.) of aqueous zinc metal batteries. Even though the regulation of cationic solvation structure has been widely studied, effects of the anionic solvation structures on the zinc metal were rarely examined. Herein, co-reconstruction of anionic and cationic solvation structures was realized through constructing a new multi-component electrolyte (Zn(BF4)2-glycerol-boric acid-chitosan-polyacrylamide, simplified as ZGBCP), which incorporates double crosslinking network via the esterification, protonation and polymerization reactions, thereby combining multiple advantages of 'liquid-like' high conductivity, 'gel-like' robust interface, and 'solid-like' high Zn2+ transfer number. Based on the ZGBCP electrolyte, the Zn anodes achieve record-low polarization and stable cycling. Furthermore, the ZGBCP electrolyte renders the AZMBs ultrawide working temperature (-50 °C ~ +100 °C) and ultralong cycle life (30000 cycles), which further validates the feasibility of the dual solvation structure strategy and provides a innovative perspective for the development of high-performance AZMBs.
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Affiliation(s)
- Lingbo Yao
- Shanghai Institute of Ceramics, Chinese Academy of Sciences, 200050, Shanghai, China
- University of Chinese Academy of Sciences, 100049, Beijing, China
| | - Jiahe Liu
- Shanghai Institute of Ceramics, Chinese Academy of Sciences, 200050, Shanghai, China
- University of Chinese Academy of Sciences, 100049, Beijing, China
| | - Feifan Zhang
- Shanghai Institute of Ceramics, Chinese Academy of Sciences, 200050, Shanghai, China
- University of Chinese Academy of Sciences, 100049, Beijing, China
| | - Bo Wen
- Shanghai Institute of Ceramics, Chinese Academy of Sciences, 200050, Shanghai, China
- University of Chinese Academy of Sciences, 100049, Beijing, China
| | - Xiaowei Chi
- Shanghai Institute of Ceramics, Chinese Academy of Sciences, 200050, Shanghai, China.
| | - Yu Liu
- Shanghai Institute of Ceramics, Chinese Academy of Sciences, 200050, Shanghai, China.
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42
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Fauser S, Drontschenko V, Ochsenfeld C, Görling A. Accurate NMR Shieldings with σ-Functionals. J Chem Theory Comput 2024; 20:6028-6036. [PMID: 38967385 DOI: 10.1021/acs.jctc.4c00512] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/06/2024]
Abstract
In recent years, density-functional methods relying on a new type of fifth-rung correlation functionals called σ-functionals have been introduced. σ-Functionals are technically closely related to the random phase approximation and require the same computational effort but yield distinctively higher accuracies for reaction and transition state energies of main group chemistry and even outperform double-hybrid functionals for these energies. In this work, we systematically investigate how accurate σ-functionals can describe nuclear magnetic resonance (NMR) shieldings. It turns out that σ-functionals yield very accurate NMR shieldings, even though in their optimization, exclusively, energies are employed as reference data and response properties such as NMR shieldings are not involved at all. This shows that σ-functionals combine universal applicability with accuracy. Indeed, the NMR shieldings from a σ-functional using input orbitals and eigenvalues from Kohn-Sham calculations with the exchange-correlation functional of Perdew, Burke and Ernzerhof (PBE) turned out to be the most accurate ones among the NMR shieldings calculated with various density-functional methods including methods using double-hybrid functionals. That σ-functionals can be used for calculating both reliable energies and response properties like NMR shieldings characterizes them as all-purpose functionals, which is appealing from an application point of view.
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Affiliation(s)
- Steffen Fauser
- Lehrstuhl für Theoretische Chemie, Universität Erlangen-Nürnberg, Egerlandstr. 3, D-91058 Erlangen, Germany
| | - Viktoria Drontschenko
- Chair of Theoretical Chemistry, Department of Chemistry, University of Munich (LMU), D-81377 Munich, Germany
| | - Christian Ochsenfeld
- Chair of Theoretical Chemistry, Department of Chemistry, University of Munich (LMU), D-81377 Munich, Germany
- Max Planck Institute for Solid State Research, D-70569 Stuttgart, Germany
| | - Andreas Görling
- Lehrstuhl für Theoretische Chemie, Universität Erlangen-Nürnberg, Egerlandstr. 3, D-91058 Erlangen, Germany
- Erlangen National High Performance Computing Center (NHR@FAU), Martensstr. 1, D-91058 Erlangen, Germany
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43
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Liu S, Wang H, Hu Z, Zhang X, Sun Y, Dong F. Resolving the overlooked photochemical nitrophenol transformation mechanism induced by nonradical species under visible light. Proc Natl Acad Sci U S A 2024; 121:e2401452121. [PMID: 39018193 PMCID: PMC11287141 DOI: 10.1073/pnas.2401452121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Accepted: 06/04/2024] [Indexed: 07/19/2024] Open
Abstract
Nitrophenols present on the surface of particulates are ubiquitous in the atmosphere. However, its atmospheric photochemical transformation pathway remains unknown, for which the crucial effect of visible light is largely overlooked, resulting in an incomplete understanding of the effects of nitrophenols in the atmospheric environment. This study delves into the photolysis mechanism of 4-nitrophenol (4NP), one of the most abundant atmospheric nitrophenol compounds, on the surface of photoactive particulates under visible light irradiation. Unexpectedly, the nonradical species (singlet oxygen, 1O2) was identified as a dominant factor in driving the visible photolysis of 4NP. The pathways of HONO and p-benzoquinone (C6H4O2) generation were clarified by acquiring direct evidence of C-N and O-H bond breakage in the nitro (-NO2) and hydroxyl (-OH) groups of 4NP. The further decomposition of HONO results in the generation of NO and hydroxyl radicals, which could directly contribute to atmospheric oxidizing capacity and complicate the PM2.5 composition. Significantly, the behavior of 1O2-induced visible photolysis of 4NP was universal on the surface of common particulates in the atmosphere, such as A1 dust and Fe2O3. This work advances the understanding of the photochemical transformation mechanism of particulate-phase atmospheric nitrophenols, which is indispensable in elucidating the role of nitrophenols in atmospheric chemistry.
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Affiliation(s)
- Shujun Liu
- Research Center for Carbon-Neutral Environmental & Energy Technology, Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu611731, China
| | - Hong Wang
- Research Center for Carbon-Neutral Environmental & Energy Technology, Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu611731, China
| | - Zehui Hu
- Research Center for Carbon-Neutral Environmental & Energy Technology, Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu611731, China
| | - Xin Zhang
- Research Center for Carbon-Neutral Environmental & Energy Technology, Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu611731, China
| | - Yanjuan Sun
- School of Resources and Environment, University of Electronic Science and Technology of China, Chengdu611731, China
| | - Fan Dong
- Research Center for Carbon-Neutral Environmental & Energy Technology, Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu611731, China
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44
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Pu Z, Fu X, Qin J, Yang H, Shuai M, Li F. Spectroscopic and Theoretical Insights into H 2 Activation on Uranium Monoxide: Homolytic H 2 Cleavage Mediated by Intermediate OU(η 2-H 2). Inorg Chem 2024; 63:13304-13310. [PMID: 38986152 DOI: 10.1021/acs.inorgchem.4c01059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/12/2024]
Abstract
Elucidating molecular-level interactions between dihydrogen (H2) and uranium oxides reveals fundamental insights into the intrinsic H2 activation mechanisms underlying processes such as heterogeneous catalysis over uranium oxides and corrosion of uranium induced by H2. Herein, the reactions of H2 with uranium monoxide (UO) molecules have been investigated via a combination of matrix-isolation infrared spectroscopy and quantum chemical calculations. A side-on bonded H2 complex, OU(η2-H2), is identified at 3733.7 and 800.3 cm-1. This species is regarded as a crucial intermediate along H2 activation pathways. Bonding analysis reveals cooperative U(π5f/6d) → H2(σ*) π// backdonation and U ← H2(σ) σ donation in OU(η2-H2) that facilitate the activation of the H2 moiety. Upon λ > 550 nm photoirradiation, OU(η2-H2) isomerizes into H2UO, indicating the homolytic H2 cleavage on UO. Mechanistic details of H2 adsorption and dissociation on UO molecules have been further elucidated.
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Affiliation(s)
- Zhen Pu
- Institute of Materials, China Academy of Engineering Physics, Mailbox No.9-21, Huafengxincun, Jiangyou, Sichuan 621908, PR China
| | - Xiaoguo Fu
- Institute of Materials, China Academy of Engineering Physics, Mailbox No.9-21, Huafengxincun, Jiangyou, Sichuan 621908, PR China
| | - Jianwei Qin
- Institute of Materials, China Academy of Engineering Physics, Mailbox No.9-21, Huafengxincun, Jiangyou, Sichuan 621908, PR China
| | - Hu Yang
- School of Materials and Chemistry, Southwest University of Science and Technology, 59 Middle Section of Qinglong Road, Mianyang 621010, PR China
| | - Maobing Shuai
- Institute of Materials, China Academy of Engineering Physics, Mailbox No.9-21, Huafengxincun, Jiangyou, Sichuan 621908, PR China
| | - Fang Li
- School of Materials and Chemistry, Southwest University of Science and Technology, 59 Middle Section of Qinglong Road, Mianyang 621010, PR China
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45
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Li M, Li L, Liu S, Zhang Q, Wang W, Wang Q. Insights into the catalytic effect of atmospheric organic trace species on the hydration of Criegee intermediates. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 949:174877. [PMID: 39047816 DOI: 10.1016/j.scitotenv.2024.174877] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Revised: 07/14/2024] [Accepted: 07/17/2024] [Indexed: 07/27/2024]
Abstract
The bimolecular reactions between Criegee intermediates (CIs) and atmospheric trace species have been extensively investigated, with a particular focus on the reaction with water, while the catalytic role of atmospheric organic compounds in hydration reactions was often neglected. In this study, we employed quantum chemical calculations and Born-Oppenheimer molecular dynamics (BOMD) simulations to investigate the catalytic effects of atmospheric organic amines, organic acids, and alcohols on the hydration reactions of CIs in the gas phase and at the gas-liquid interface. The catalytic reactions were found to follow a cyclic catalytic structure and a stepwise reaction mechanism. Gas-phase studies revealed that organic acids exhibited stronger catalytic effects compared to amines and alcohols, and the catalytic efficiency of amines and alcohols was similar to those of single water molecule. In addition, the catalytic reaction barriers of organic acids and alcohols were positively correlated with their gas-phase acidity (R2 = 0.94 to 0.97). A negative correlation was observed between the catalytic reaction barrier of amines and their gas-phase basicity (R2 = 0.84 to 0.90) and proton affinity (R2 = 0.84 to 0.92). At the gas-liquid interface, organic acids promoted the formation of hydroxyethyl hydroperoxide (HEHP, CH3CH(OH)(OOH)), organic acid ions, and H3O+, whereas the catalytic hydration of CIs by organic amines resulted in the formation of CH3CH(OH)OO and amine ions. Both HEHP and CH3CH(OH)OO can be further decomposed to form OH and HO2, or participate in new particles formation as precursors. This study complements the research gap on the reaction of CIs with water, providing valuable insights into the atmospheric sources of HEHP and HOx as well as the formation of secondary organic aerosols (SOAs).
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Affiliation(s)
- Mengyao Li
- Environment Research Institute, Shandong University, Qingdao 266237, PR China
| | - Lei Li
- Environment Research Institute, Shandong University, Qingdao 266237, PR China
| | - Shanjun Liu
- Jinan Environmental Research Academy, Jinan 250100, PR China.
| | - Qingzhu Zhang
- Environment Research Institute, Shandong University, Qingdao 266237, PR China.
| | - Wengxing Wang
- Environment Research Institute, Shandong University, Qingdao 266237, PR China
| | - Qiao Wang
- Environment Research Institute, Shandong University, Qingdao 266237, PR China
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46
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Volkov MA, Abkhalimov EV, Novikov AP, Nevolin IM, Grigoriev MS. Synthesis of Technetium Carboxylates: Wheel-Like Octanuclear Clusters (Tc 8(μ-O) 8(RCOO) 16, Where R = CF 3, C 6H 5)─Potential Nanobuilding Units for Tc-MOFs. Inorg Chem 2024; 63:13613-13623. [PMID: 38982863 DOI: 10.1021/acs.inorgchem.4c01818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/11/2024]
Abstract
Herein, we studied the behavior of TcO4- in trifluoroacetic anhydride (TFAA) under visible light irradiation in situ by UV-vis spectroscopy. One carboxylate of Tc(VII) C2F3O5Tc (1) and two wheel-like carboxylate clusters of Tc(IV) Tc8(μ-O)8(CF3COO)16 (2, 3) and Tc8(μ-O)8(C6H5COO)16 (4) were synthesized and analyzed using pXRD, TGA, UV-vis spectroscopy, and SCXRD techniques. According to SCXRD, it was found that Tc(IV) trifluoroacetate exists in two crystalline modifications. By UV-vis spectroscopy and DFT calculations, it was shown that the primary compound in the reaction system is trifluoroacetate Tc(VII). A technetium trifluoroacetate(VII) and Tc intermediates of unidentified nature both show photosensitivity. The influence of intermolecular noncovalent interactions on the volatility of trifluoroacetate and benzoate Tc(IV) is shown. The main regularities of chemical transformations of technetium in nonaqueous solutions of carboxylates have been revealed. The obtained data on the kinetics of the process suggest that technetium in trifluoroacetic anhydride can simultaneously exist in the form of Tc(VII), Tc(VI), Tc(V), and Tc(IV). Under laser ionization or prolonged heating, the formation of the Tc(II,III)-cluster is observed.
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Affiliation(s)
- Mikhail A Volkov
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninsky prosp. 31-4, 119071 Moscow, Russia
| | - Evgeny V Abkhalimov
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninsky prosp. 31-4, 119071 Moscow, Russia
| | - Anton P Novikov
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninsky prosp. 31-4, 119071 Moscow, Russia
| | - Iurii M Nevolin
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninsky prosp. 31-4, 119071 Moscow, Russia
| | - Mikhail S Grigoriev
- Frumkin Institute of Physical Chemistry and Electrochemistry, Russian Academy of Sciences, Leninsky prosp. 31-4, 119071 Moscow, Russia
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47
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Yuan K, Yao Q, Liu Y. Mutual synergistic regulation of chloride anion and cesium cation binding using a new designed macrocyclic multi-functional sites receptor: A case of DFT computational prediction. J Chem Phys 2024; 161:034305. [PMID: 39007389 DOI: 10.1063/5.0214995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2024] [Accepted: 06/27/2024] [Indexed: 07/16/2024] Open
Abstract
The mutual synergistic regulation of the multi-functional sites on a single receptor molecule for ion-binding/recognition is vital for the new receptor design and needs to be well explored from experiment and theory. In this work, a new macrocyclic ion receptor (BEBUR) with three functional zones, including two ether holes and one biurea groups, is designed expecting to mutually enhance the ion-binding performance. The binding behaviors of BEBUR mainly for Cl- and Cs+ are deeply investigated by using density functional theoretical calculations. It is found that Cl-/Cs+ binding can be mutually enhanced and synergistically regulated via corresponding conformational changes of the receptor, well reflecting an electrical complementary matching and mutual reinforcement effect. Moreover, solvent effect calculations indicate that BEBUR may be an excellent candidate structure for Cl--binding with the enhancement of counter ion (Cs+) in water and toluene. In addition, visualization of intermolecular noncovalent interaction is used for analysis on the nature of the binding interactions between receptor and ions.
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Affiliation(s)
- Kun Yuan
- College of Chemical Engineering and Technology, Key Laboratory for New Molecule Materials Design and Function of Gansu Universities, Key Laboratory of Advanced Optoelectronic Functional Materials of Gasu Province, Tianshui Normal University, Tianshui 741001, China
| | - Qingqing Yao
- College of Chemical Engineering and Technology, Key Laboratory for New Molecule Materials Design and Function of Gansu Universities, Key Laboratory of Advanced Optoelectronic Functional Materials of Gasu Province, Tianshui Normal University, Tianshui 741001, China
| | - Yanzhi Liu
- College of Chemical Engineering and Technology, Key Laboratory for New Molecule Materials Design and Function of Gansu Universities, Key Laboratory of Advanced Optoelectronic Functional Materials of Gasu Province, Tianshui Normal University, Tianshui 741001, China
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48
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Chen W, Huang C, Biehl P, Zhang K. Water training initiates spatially regulated microstructures with competitive mechanics in hydroadaptive polymers. Nat Commun 2024; 15:6093. [PMID: 39030215 PMCID: PMC11271527 DOI: 10.1038/s41467-024-50328-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Accepted: 07/04/2024] [Indexed: 07/21/2024] Open
Abstract
The strategy using water as a medium for dynamic modulation of competitive plasticity and viscoelasticity provides a unique perspective to attain adaptive materials. We reveal sustainable polymers, herein cellulose phenoxyacetate as a typical example, with unusual water-responsive dual-mechanic functionalities addressed via a chronological water training strategy. The temporal significance of such water-responsive mechanical behaviors becomes apparent considering that a mere 3-minute exposure or a prolonged 3-hour exposure to water induced different types of mechano-responsiveness. This endows the materials with multiple recoverable shape-changes during water and air training, and consequently even underlines the switchability between the pre-loaded stable water shapes (> 20 months) and the sequentially fixed air shapes. Our discovery exploits the competitive mechanics initiated by water training, enabling polymers with spatially regulated microstructures via their inherently distinct mechanical properties. Insights into the molecular changes represents a considerable fundamental innovation, can be broadly applicable to a diverse array of hydroadaptive polymers.
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Affiliation(s)
- Wenbo Chen
- Sustainable Materials and Chemistry, Department of Wood Technology and Wood-based Composites, University of Göttingen, Büsgenweg 4, D-37077, Göttingen, Germany
| | - Caoxing Huang
- Sustainable Materials and Chemistry, Department of Wood Technology and Wood-based Composites, University of Göttingen, Büsgenweg 4, D-37077, Göttingen, Germany
- Jiangsu Co-Innovation Center for Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, 210037, Nanjing, China
| | - Philip Biehl
- Sustainable Materials and Chemistry, Department of Wood Technology and Wood-based Composites, University of Göttingen, Büsgenweg 4, D-37077, Göttingen, Germany
| | - Kai Zhang
- Sustainable Materials and Chemistry, Department of Wood Technology and Wood-based Composites, University of Göttingen, Büsgenweg 4, D-37077, Göttingen, Germany.
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49
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Salikov RF, Belyy AY, Ilyushchenko MK, Platonov DN, Sokolova AD, Tomilov YV. Antiaromaticity of Cycloheptatrienyl Anions: Structure, Acidity, and Magnetic Properties. Chemistry 2024; 30:e202401041. [PMID: 38785416 DOI: 10.1002/chem.202401041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Revised: 05/23/2024] [Accepted: 05/24/2024] [Indexed: 05/25/2024]
Abstract
Investigations of the nature and degree of antiaromaticity of cycloheptatrienyl anion derivatives using both experimental and computational tools are presented. The ground state of cycloheptatrienyl anion in the gas phase is triplet, planar and Baird-aromatic. In DMSO, it assumes a singlet distorted allylic form with a paratropic ring current. The other derivatives in both phases assume either allylic or diallylic conformations depending on the substituent pattern. A combination of experimental and computational methods was used to determine the pKa values of 16 derivatives in DMSO, which ranged from 36 to -10.7. We revealed that the stronger stabilization of the anionic system, which correlates with acidity, does not necessarily imply a lower degree of antiaromaticity in terms of magnetic properties. Conversely, the substitution pattern first affects the geometry of the ring through the bulkiness of the substituents and their better conjugation with a more distorted system. Consequently, the distortion reduces the cyclic conjugation in the π-system and thereby decreases the paratropic current in a magnetic field, which manifests itself as a decrease in the NICS. The triplet-state geometries and magnetic properties are nearly independent on the substitution pattern, which is typical for simple aromatic systems.
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Affiliation(s)
- Rinat F Salikov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., Moscow, 119991, Russian Federation
- Department of Chemistry, Higher School of Economics National Research University, Moscow, 101000, Russian Federation
| | - Alexander Y Belyy
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., Moscow, 119991, Russian Federation
| | - Matvey K Ilyushchenko
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., Moscow, 119991, Russian Federation
| | - Dmitry N Platonov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., Moscow, 119991, Russian Federation
| | - Alena D Sokolova
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., Moscow, 119991, Russian Federation
| | - Yury V Tomilov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., Moscow, 119991, Russian Federation
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50
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Shikari A, Sharma M, Bhattacharyya K, Pan SC. Organocatalytic Dearomative Spirocyclization Reaction of Enone-Tethered α-and β-Naphthols and Dearomatization Reaction of In Situ Generated Nitro-Olefin-Tethered α-Naphthols. J Org Chem 2024; 89:9769-9782. [PMID: 38920324 DOI: 10.1021/acs.joc.4c00131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/27/2024]
Abstract
Herein, we report a catalytic dearomative spirocyclization reaction of new substrates having aryl/alkyl enone tethered α- and β-naphthols and a dearomatization reaction of in situ generated nitro-olefin-tethered α-naphthols. The spirocarbocycles were obtained in moderate to good yields with high diastereoselectivities. A preliminary catalytic asymmetric variant was reported. A few applications such as hydrogenations and epoxidation reaction have also been demonstrated. Theoretical study has also been performed to understand high diastereoselectivity in the triethylamine catalyzed spirocyclization reaction.
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Affiliation(s)
- Amit Shikari
- Department of Chemistry, Indian Institute of Technology Guwahati, North Guwahati, Assam 781039, India
| | - Madhur Sharma
- Department of Chemistry, Indian Institute of Technology Guwahati, North Guwahati, Assam 781039, India
| | - Kalishankar Bhattacharyya
- Department of Chemistry, Indian Institute of Technology Guwahati, North Guwahati, Assam 781039, India
| | - Subhas Chandra Pan
- Department of Chemistry, Indian Institute of Technology Guwahati, North Guwahati, Assam 781039, India
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