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Cosgrove DJ. Structure and growth of plant cell walls. Nat Rev Mol Cell Biol 2024; 25:340-358. [PMID: 38102449 DOI: 10.1038/s41580-023-00691-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/15/2023] [Indexed: 12/17/2023]
Abstract
Plant cells build nanofibrillar walls that are central to plant growth, morphogenesis and mechanics. Starting from simple sugars, three groups of polysaccharides, namely, cellulose, hemicelluloses and pectins, with very different physical properties are assembled by the cell to make a strong yet extensible wall. This Review describes the physics of wall growth and its regulation by cellular processes such as cellulose production by cellulose synthase, modulation of wall pH by plasma membrane H+-ATPase, wall loosening by expansin and signalling by plant hormones such as auxin and brassinosteroid. In addition, this Review discusses the nuanced roles, properties and interactions of cellulose, matrix polysaccharides and cell wall proteins and describes how wall stress and wall loosening cooperatively result in cell wall growth.
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Affiliation(s)
- Daniel J Cosgrove
- Department of Biology, Pennsylvania State University, University Park, Pennsylvania, USA.
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2
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Okuno Y, Kishikawa A, Imakouji H, Yoshida M. Analysis of genes specific to the early maturation stage of Sesamum indicum seeds by subtraction method *,*. Biotechnol Appl Biochem 2024; 71:414-428. [PMID: 38282371 DOI: 10.1002/bab.2549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 11/02/2023] [Indexed: 01/30/2024]
Abstract
The mechanisms regulating the content ratio of unsaturated fatty acid in sesame oil need to be clarified in order to breed novel varieties with high contents of unsaturated fatty acids. Full-length cDNA libraries prepared from sesame seeds 1 to 3 weeks after flowering were subtracted with cDNAs from plantlets of 4 weeks after germination. A total of 1545 cDNA clones was sequenced. The functions of novel genes expressed specifically during the early maturation of sesame seeds were investigated by the transformation of Arabidopsis thaliana. Thirteen genes for a transcription factor were identified, four of which were involved in ethylene signaling. Fifty-nine genes, including those for the aquaporin-like protein and ethylene response factor, were analyzed by overexpression in A. thaliana. The overexpression of novel genes and the aquaporin-like protein gene in A. thaliana increased the content of unsaturated fatty acids. The localization of these products was investigated by the induction of the expression vectors for the GFP fusion protein into onion epidermal cells and sesame root cells with a particle gun. As a result, two cDNA clones were identified as good candidate genes to clarify the regulation in the yield and the ratio of unsaturated fatty acids in sesame seeds. Sein60414 (Accession No. LC603128), an intrinsic membrane protein, may be involved in the increase of unsaturated fatty acids, and Sein61074 (Accession No. LC709278) MAP3K δ-1 protein kinase in the regulation of the total ratio of unsaturated fatty acids in sesame seeds.
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Affiliation(s)
- Yu Okuno
- Department, of Agricultural Science, Kinki University, Nara, Japan
| | | | - Hisashi Imakouji
- Department, of Agricultural Science, Kinki University, Nara, Japan
| | - Motonobu Yoshida
- Department, of Agricultural Science, Kinki University, Nara, Japan
- Osaka University of Comprehensive Children Education, Osaka, Japan
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Bonfanti A, Smithers ET, Bourdon M, Guyon A, Carella P, Carter R, Wightman R, Schornack S, Jönsson H, Robinson S. Stiffness transitions in new walls post-cell division differ between Marchantia polymorpha gemmae and Arabidopsis thaliana leaves. Proc Natl Acad Sci U S A 2023; 120:e2302985120. [PMID: 37782806 PMCID: PMC10576037 DOI: 10.1073/pnas.2302985120] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Accepted: 08/17/2023] [Indexed: 10/04/2023] Open
Abstract
Plant morphogenesis is governed by the mechanics of the cell wall-a stiff and thin polymeric box that encloses the cells. The cell wall is a highly dynamic composite material. New cell walls are added during cell division. As the cells continue to grow, the properties of cell walls are modulated to undergo significant changes in shape and size without breakage. Spatial and temporal variations in cell wall mechanical properties have been observed. However, how they relate to cell division remains an outstanding question. Here, we combine time-lapse imaging with local mechanical measurements via atomic force microscopy to systematically map the cell wall's age and growth, with their stiffness. We make use of two systems, Marchantia polymorpha gemmae, and Arabidopsis thaliana leaves. We first characterize the growth and cell division of M. polymorpha gemmae. We then demonstrate that cell division in M. polymorpha gemmae results in the generation of a temporary stiffer and slower-growing new wall. In contrast, this transient phenomenon is absent in A. thaliana leaves. We provide evidence that this different temporal behavior has a direct impact on the local cell geometry via changes in the junction angle. These results are expected to pave the way for developing more realistic plant morphogenetic models and to advance the study into the impact of cell division on tissue growth.
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Affiliation(s)
- Alessandra Bonfanti
- Sainsbury Laboratory Cambridge University, CambridgeCB2 1LR, United Kingdom
- Department of Civil and Environmental Engineering, Politecnico di Milano, Milan20133, Italy
| | | | - Matthieu Bourdon
- Sainsbury Laboratory Cambridge University, CambridgeCB2 1LR, United Kingdom
| | - Alex Guyon
- Sainsbury Laboratory Cambridge University, CambridgeCB2 1LR, United Kingdom
| | - Philip Carella
- Sainsbury Laboratory Cambridge University, CambridgeCB2 1LR, United Kingdom
- Cell and Developmental Biology, John Innes Centre, NorwichNR4 7UH, United Kingdom
| | - Ross Carter
- Sainsbury Laboratory Cambridge University, CambridgeCB2 1LR, United Kingdom
| | - Raymond Wightman
- Sainsbury Laboratory Cambridge University, CambridgeCB2 1LR, United Kingdom
| | | | - Henrik Jönsson
- Sainsbury Laboratory Cambridge University, CambridgeCB2 1LR, United Kingdom
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, CambridgeCB3 0WA, United Kingdom
- Department of Astronomy and Theoretical Physics, Computational Biology and Biological Physics, Lund University, Lund223 62, Sweden
| | - Sarah Robinson
- Sainsbury Laboratory Cambridge University, CambridgeCB2 1LR, United Kingdom
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Shi Y, Li BJ, Grierson D, Chen KS. Insights into cell wall changes during fruit softening from transgenic and naturally occurring mutants. PLANT PHYSIOLOGY 2023:kiad128. [PMID: 36823689 DOI: 10.1093/plphys/kiad128] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 01/26/2023] [Accepted: 02/14/2023] [Indexed: 06/18/2023]
Abstract
Excessive softening during fleshy fruit ripening leads to physical damage and infection that reduce quality and cause massive supply chain losses. Changes in cell wall (CW) metabolism, involving loosening and disassembly of the constituent macromolecules, are the main cause of softening. Several genes encoding CW metabolizing enzymes have been targeted for genetic modification to attenuate softening. At least nine genes encoding CW modifying proteins have increased expression during ripening. Any alteration of these genes could modify CW structure and properties and contribute to softening, but evidence for their relative importance is sparse. The results of studies with transgenic tomato (Solanum lycopersicum), the model for fleshy fruit ripening, investigations with strawberry (Fragaria spp.) and apple (Malus domestica), and results from naturally occurring textural mutants provide direct evidence of gene function and the contribution of CW biochemical modifications to fruit softening. Here we review the revised CW structure model and biochemical and structural changes in CW components during fruit softening and then focus on and integrate the results of changes in CW characteristics derived from studies on transgenic fruits and mutants. Potential strategies and future research directions to understand and control the rate of fruit softening are also discussed.
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Affiliation(s)
- Yanna Shi
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, People's Republic of China
- State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, People's Republic of China
| | - Bai-Jun Li
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, People's Republic of China
- State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, People's Republic of China
| | - Donald Grierson
- State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, People's Republic of China
- Division of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, United Kingdom
| | - Kun-Song Chen
- College of Agriculture and Biotechnology, Zhejiang University, Zijingang Campus, Hangzhou 310058, People's Republic of China
- Zhejiang Provincial Key Laboratory of Horticultural Plant Integrative Biology, Zhejiang University, Zijingang Campus, Hangzhou 310058, People's Republic of China
- State Agriculture Ministry Laboratory of Horticultural Plant Growth, Development and Quality Improvement, Zhejiang University, Zijingang Campus, Hangzhou 310058, People's Republic of China
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Fedoreyeva LI, Baranova EN, Chaban IA, Dilovarova TA, Vanyushin BF, Kononenko NV. Elongating Effect of the Peptide AEDL on the Root of Nicotiana tabacum under Salinity. PLANTS 2022; 11:plants11101352. [PMID: 35631778 PMCID: PMC9147445 DOI: 10.3390/plants11101352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 05/12/2022] [Accepted: 05/13/2022] [Indexed: 11/18/2022]
Abstract
The overall survival of a plant depends on the development, growth, and functioning of the roots. Root development and growth are not only genetically programmed but are constantly influenced by environmental factors, with the roots adapting to such changes. The peptide AEDL (alanine–glutamine acid–asparagine acid–leucine) at a concentration of 10−7 M had an elongating effect on the root cells of Nicotiana tabacum seedlings. The action of this peptide at such a low concentration is similar to that of peptide phytohormones. In the presence of 150 mM NaCl, a strong distortion in the development and architecture of the tobacco roots was observed. However, the combined presence of AEDL and NaCl resulted in normal root development. In the presence of AEDL, reactive oxygen species (ROS) were detected in the elongation and root hair zones of the roots. The ROS marker fluorescence intensity in plant cells grown with AEDL was much lower than that of plant cells grown without the peptide. Thus, AEDL protected the root tissue from damage by oxidative stress caused by the toxic effects of NaCl. Localization and accumulation of AEDL at the root were tissue-specific. Fluorescence microscopy showed that FITC-AEDL predominantly localized in the zones of elongation and root hairs, with insignificant localization in the meristem zone. AEDL induced a change in the structural organization of chromatin. Structural changes in chromatin caused significant changes in the expression of numerous genes associated with the development and differentiation of the root system. In the roots of tobacco seedlings grown in the presence of AEDL, the expression of WOX family genes decreased, and differentiation of stem cells increased, which led to root elongation. However, in the presence of NaCl, elongation of the tobacco root occurred via a different mechanism involving genes of the expansin family that weaken the cell wall in the elongation zone. Root elongation of plants is of fundamental importance in biology and is especially relevant to crop production as it can affect crop yields.
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Affiliation(s)
- Larisa I. Fedoreyeva
- All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya 42, 127550 Moscow, Russia; (E.N.B.); (I.A.C.); (T.A.D.); (B.F.V.); (N.V.K.)
- Correspondence:
| | - Ekaterina N. Baranova
- All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya 42, 127550 Moscow, Russia; (E.N.B.); (I.A.C.); (T.A.D.); (B.F.V.); (N.V.K.)
- N.V. Tsitsin Main Botanical Garden of Russian Academy of Sciences, Botanicheskaya 4, 127276 Moscow, Russia
| | - Inn A. Chaban
- All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya 42, 127550 Moscow, Russia; (E.N.B.); (I.A.C.); (T.A.D.); (B.F.V.); (N.V.K.)
| | - Tatyana A. Dilovarova
- All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya 42, 127550 Moscow, Russia; (E.N.B.); (I.A.C.); (T.A.D.); (B.F.V.); (N.V.K.)
| | - Boris F. Vanyushin
- All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya 42, 127550 Moscow, Russia; (E.N.B.); (I.A.C.); (T.A.D.); (B.F.V.); (N.V.K.)
- A.N. Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory 1, 119991 Moscow, Russia
| | - Neonila V. Kononenko
- All-Russia Research Institute of Agricultural Biotechnology, Timiryazevskaya 42, 127550 Moscow, Russia; (E.N.B.); (I.A.C.); (T.A.D.); (B.F.V.); (N.V.K.)
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Dora S, Terrett OM, Sánchez-Rodríguez C. Plant-microbe interactions in the apoplast: Communication at the plant cell wall. THE PLANT CELL 2022; 34:1532-1550. [PMID: 35157079 PMCID: PMC9048882 DOI: 10.1093/plcell/koac040] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Accepted: 01/29/2022] [Indexed: 05/20/2023]
Abstract
The apoplast is a continuous plant compartment that connects cells between tissues and organs and is one of the first sites of interaction between plants and microbes. The plant cell wall occupies most of the apoplast and is composed of polysaccharides and associated proteins and ions. This dynamic part of the cell constitutes an essential physical barrier and a source of nutrients for the microbe. At the same time, the plant cell wall serves important functions in the interkingdom detection, recognition, and response to other organisms. Thus, both plant and microbe modify the plant cell wall and its environment in versatile ways to benefit from the interaction. We discuss here crucial processes occurring at the plant cell wall during the contact and communication between microbe and plant. Finally, we argue that these local and dynamic changes need to be considered to fully understand plant-microbe interactions.
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Zhang H, Rutherford S, Qi S, Huang P, Dai Z, Du D. Transcriptome profiling of Arabidopsis thaliana roots in response to allelopathic effects of Conyza canadensis. ECOTOXICOLOGY (LONDON, ENGLAND) 2022; 31:53-63. [PMID: 34647200 DOI: 10.1007/s10646-021-02489-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 09/27/2021] [Indexed: 06/13/2023]
Abstract
The molecular mechanisms underlying allelopathy and their role in the interactions between invasive weeds and native species remain unclear. In this study, we aimed to explore the physiological and molecular response of plant roots of a native species to allelopathy from an invasive weed. We examined the growth and development of roots of native Arabidopsis thaliana for a 2-week period after being treated with aqueous extracts at different concentrations from invasive Conyza canadensis. Extracts with higher concentration in the Murashige and Skoog (MS) media (i.e., 4 mg of extract/mL of MS) significantly affected the root growth of A. thaliana. Roots of A. thaliana displayed weakened root tip activity and an accumulation of reactive oxygen species (ROS) in response to extracts from C. canadensis. The transcriptome analysis of A. thaliana roots exposed to phytotoxicity revealed differentially expressed genes (DEGs) involved in cell wall formation, abiotic stress, transporter genes and signal transduction. We found that genes associated with nutrient transport, such as major facilitator superfamily (MFS) and amino acid permease (AAP3) transporters as well as genes involved in stress response, including leucine-rich repeat receptor-like protein kinases (LRR-RLKs) were down-regulated. In addition, we found that many transcription factors associated with plant stress (such as APETALA2/ethylene response factors) were up-regulated while others (e.g., zinc-finger proteins) were down-regulated. Allelochemicals from C. canadensis also induced the up-regulation of detoxification (DTX) genes, ROS related genes, calcineurin B-like interacting protein kinases (CIPKs) and calmodulin. Overall, our findings provided insights into allelopathy in C. canadensis at the molecular level, and contributes to our understanding of invasion mechanisms of alien plant species. CLINICAL TRIALS REGISTRATION: This study does not contain any studies with clinical trials performed by any of the authors.
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Affiliation(s)
- Haiyan Zhang
- Institute of Environment and Ecology, School of the Environment Safety Engineering, Jiangsu University, Xuefu Road 301, Zhenjiang, 212013, PR China
- Changzhou Environmental Monitoring Center, Puqian Street 149, Changzhou, 213000, PR China
| | - Susan Rutherford
- Institute of Environment and Ecology, School of the Environment Safety Engineering, Jiangsu University, Xuefu Road 301, Zhenjiang, 212013, PR China
- The Royal Botanic Gardens and Domain Trust, MrsMacquaries Road, Sydney, NSW, 2000, Australia
| | - Shanshan Qi
- Institute of Agricultural Engineering, Jiangsu University, Xuefu Road 301, Zhenjiang, 212013, PR China
| | - Ping Huang
- Institute of Environment and Ecology, School of the Environment Safety Engineering, Jiangsu University, Xuefu Road 301, Zhenjiang, 212013, PR China
| | - Zhicong Dai
- Institute of Environment and Ecology, School of the Environment Safety Engineering, Jiangsu University, Xuefu Road 301, Zhenjiang, 212013, PR China.
- Institute of Agricultural Engineering, Jiangsu University, Xuefu Road 301, Zhenjiang, 212013, PR China.
| | - Daolin Du
- Institute of Environment and Ecology, School of the Environment Safety Engineering, Jiangsu University, Xuefu Road 301, Zhenjiang, 212013, PR China.
- Institute of Agricultural Engineering, Jiangsu University, Xuefu Road 301, Zhenjiang, 212013, PR China.
- Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, 215009, PR China.
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Valenzuela-Riffo F, Parra-Palma C, Ramos P, Morales-Quintana L. Molecular and structural insights into FaEXPA5, an alpha-expansin protein related with cell wall disassembly during ripening of strawberry fruit. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 154:581-589. [PMID: 32711363 DOI: 10.1016/j.plaphy.2020.06.010] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2020] [Revised: 06/05/2020] [Accepted: 06/05/2020] [Indexed: 06/11/2023]
Abstract
Cell wall modification is one of the main factors that produce the tissue softening during ripening of many fruit including strawberry (Fragaria x ananassa). Expansins have been studied for over 20 years as a class of the important cell growth regulators, and in the last years these have been related with the fruit softening. In strawberry, five partial sequences of the expansins genes were described in the past, this analysis showed that FaEXP5 partial gene was present throughout fruit development, but was more strongly expressed during ripening. Now, we reported the full length of this α-expansin (FaEXPA5), whose had been related with fruit softening, and the protein structural was described by homology model. Their transcript accumulation during softening was confirmed by qRT-PCR, displaying a high accumulation rate during fruit ripening. In silico analysis of promoter sequence showed four ABA and two auxin cis-regulatory elements, potentially responsible for the expression patterns observed in response to the hormone treatments. Additionally, 3D protein model displayed two domains and one open groove characteristic of expansin structures. The protein-ligand interactions were evaluated by molecular dynamic (MD) simulation using three different long structure ligands (a cellulose fiber, a xyloglucan fiber (XXXG type), and a pectin fiber as control). Favorable interactions were observed with xyloglucan and cellulose, being cellulose the best ligand with lower RMSD value. Additionally, MD simulations showed that FaEXPA5 can interact with the ligands through residues present in the open groove along the two domains.
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Affiliation(s)
- Felipe Valenzuela-Riffo
- Programa de Doctorado en Ciencias Mención Ingeniería Genética, Instituto de Ciencias Biológicas, Universidad de Talca, Chile
| | - Carolina Parra-Palma
- Programa de Doctorado en Ciencias Mención Ingeniería Genética, Instituto de Ciencias Biológicas, Universidad de Talca, Chile
| | - Patricio Ramos
- Instituto de Ciencias Biológicas, Universidad de Talca, Chile; Núcleo Científico Multidisciplinario-DI, Universidad de Talca, Chile.
| | - Luis Morales-Quintana
- Multidisciplinary Agroindustry Research Laboratory, Instituto de Ciencias Biomédica, Facultad Ciencias de La Salud, Universidad Autónoma de Chile, Talca, Chile.
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Liu J, Shi M, Wang J, Zhang B, Li Y, Wang J, El-Sappah AH, Liang Y. Comparative Transcriptomic Analysis of the Development of Sepal Morphology in Tomato ( Solanum Lycopersicum L.). Int J Mol Sci 2020; 21:ijms21165914. [PMID: 32824631 PMCID: PMC7460612 DOI: 10.3390/ijms21165914] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Revised: 08/12/2020] [Accepted: 08/12/2020] [Indexed: 12/19/2022] Open
Abstract
Sepal is an important component of the tomato flower and fruit that typically protects the flower in bud and functions as a support for petals and fruits. Moreover, sepal appearance influences the commercial property of tomato nowadays. However, the phenotype information and development mechanism of the natural variation of sepal morphology in the tomato is still largely unexplored. To study the developmental mechanism and to determine key genes related to downward sepal in the tomato, we compared the transcriptomes of sepals between downward sepal (dsp) mutation and the wild-type by RNA sequencing and found that the differentially expressed genes were dominantly related to cell expansion, auxin, gibberellins and cytokinin. dsp mutation affected cell size and auxin, and gibberellins and cytokinin contents in sepals. The results showed that cell enlargement or abnormal cell expansion in the adaxial part of sepals in dsp. As reported, auxin, gibberellins and cytokinin were important factors for cell expansion. Hence, dsp mutation regulated cell expansion to control sepal morphology, and auxin, gibberellins and cytokinin may mediate this process. One ARF gene and nine SAUR genes were dramatically upregulated in the sepal of the dsp mutant, whereas seven AUX/IAA genes were significantly downregulated in the sepal of dsp mutant. Further bioinformatic analyses implied that seven AUX/IAA genes might function as negative regulators, while one ARF gene and nine SAUR genes might serve as positive regulators of auxin signal transduction, thereby contributing to cell expansion in dsp sepal. Thus, our data suggest that 17 auxin-responsive genes are involved in downward sepal formation in the tomato. This study provides valuable information for dissecting the molecular mechanism of sepal morphology control in the tomato.
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Affiliation(s)
- Jingyi Liu
- College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (J.L.); (M.S.); (J.W.); (B.Z.); (Y.L.); (J.W.); (A.H.E.-S.)
- State Agriculture Ministry Laboratory of Northwest Horticultural Plant Germplasm Resources & Genetic Improvement, Northwest A&F University, Shaanxi 712100, China
| | - Meijing Shi
- College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (J.L.); (M.S.); (J.W.); (B.Z.); (Y.L.); (J.W.); (A.H.E.-S.)
- State Agriculture Ministry Laboratory of Northwest Horticultural Plant Germplasm Resources & Genetic Improvement, Northwest A&F University, Shaanxi 712100, China
| | - Jing Wang
- College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (J.L.); (M.S.); (J.W.); (B.Z.); (Y.L.); (J.W.); (A.H.E.-S.)
- State Agriculture Ministry Laboratory of Northwest Horticultural Plant Germplasm Resources & Genetic Improvement, Northwest A&F University, Shaanxi 712100, China
| | - Bo Zhang
- College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (J.L.); (M.S.); (J.W.); (B.Z.); (Y.L.); (J.W.); (A.H.E.-S.)
- State Agriculture Ministry Laboratory of Northwest Horticultural Plant Germplasm Resources & Genetic Improvement, Northwest A&F University, Shaanxi 712100, China
| | - Yushun Li
- College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (J.L.); (M.S.); (J.W.); (B.Z.); (Y.L.); (J.W.); (A.H.E.-S.)
- State Agriculture Ministry Laboratory of Northwest Horticultural Plant Germplasm Resources & Genetic Improvement, Northwest A&F University, Shaanxi 712100, China
| | - Jin Wang
- College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (J.L.); (M.S.); (J.W.); (B.Z.); (Y.L.); (J.W.); (A.H.E.-S.)
- State Agriculture Ministry Laboratory of Northwest Horticultural Plant Germplasm Resources & Genetic Improvement, Northwest A&F University, Shaanxi 712100, China
| | - Ahmed. H. El-Sappah
- College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (J.L.); (M.S.); (J.W.); (B.Z.); (Y.L.); (J.W.); (A.H.E.-S.)
- State Agriculture Ministry Laboratory of Northwest Horticultural Plant Germplasm Resources & Genetic Improvement, Northwest A&F University, Shaanxi 712100, China
- Genetics Department, Faculty of Agriculture, Zagazig University, Zagazig 44511, Egypt
| | - Yan Liang
- College of Horticulture, Northwest A&F University, Shaanxi 712100, China; (J.L.); (M.S.); (J.W.); (B.Z.); (Y.L.); (J.W.); (A.H.E.-S.)
- State Agriculture Ministry Laboratory of Northwest Horticultural Plant Germplasm Resources & Genetic Improvement, Northwest A&F University, Shaanxi 712100, China
- Correspondence: ; Tel.: +86-29-8708-2179
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10
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Valenzuela-Riffo F, Morales-Quintana L. Study of the structure and binding site features of FaEXPA2, an α-expansin protein involved in strawberry fruit softening. Comput Biol Chem 2020; 87:107279. [PMID: 32505880 DOI: 10.1016/j.compbiolchem.2020.107279] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2020] [Revised: 04/09/2020] [Accepted: 05/04/2020] [Indexed: 10/24/2022]
Abstract
Tissue softening accompanies the ripening of many fruits and initiates the processes of irreversible deterioration. Expansins are plant cell wall proteins that have been proposed to disrupt hydrogen bonds within the cell wall polymer matrix. Several authors have shown that FaEXPA2 is a key gene that shows an increased expression level during ripening and softening of the strawberry fruit. For this reason, FaEXPA2 is frequently used as a molecular marker of softening in strawberry fruit, and changes in its relative expression have been related to changes in fruit firmness. In this context, we previously reported that FaEXPA2 has a high accumulation rate during fruit ripening in four different strawberry cultivars; however, the molecular mechanism of FaEXPA2 or expansins in general is not yet clear. Herein, a 3D model of the FaEXPA2 protein was built by comparative modeling to understand how FaEXPA2 interacts with different cell wall components at the molecular level. First, the structure was shown to display two domains characteristic of the other expansins that were previously described. The protein-ligand interaction was evaluated by molecular dynamic (MD) simulation using four different long ligands (a cellulose fiber, two of the more important xyloglucan (XG) fibers found in strawberry (XXXG and XXFG type), and a pectin (homogalacturonic acid type)). The results showed that FaEXPA2 formed a more stable complex with cellulose than other ligands via the different residues present in the open groove surface of its two domains, while FaEXPA2 did not interact with the pectin ligand.
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Affiliation(s)
- Felipe Valenzuela-Riffo
- Instituto de Ciencias Biológicas, Universidad de Talca, Chile; Programa de Doctorado en Ciencias Mención Ingeniería Genética Vegetal, Universidad de Talca, Chile
| | - Luis Morales-Quintana
- Multidisciplinary Agroindustry Research Laboratory, Instituto de Ciencias Biomédica, Facultad Ciencias de la Salud, Universidad Autónoma de Chile, Talca, Chile.
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ROBINSON SARAH, DURAND‐SMET PAULINE. Combining tensile testing and microscopy to address a diverse range of questions. J Microsc 2020; 278:145-153. [DOI: 10.1111/jmi.12863] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Revised: 12/20/2019] [Accepted: 01/08/2020] [Indexed: 12/23/2022]
Affiliation(s)
- SARAH ROBINSON
- The Sainsbury Laboratory Cambridge University Bateman Street Cambridge UK
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12
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Abstract
The growing cell wall in plants has conflicting requirements to be strong enough to withstand the high tensile forces generated by cell turgor pressure while selectively yielding to those forces to induce wall stress relaxation, leading to water uptake and polymer movements underlying cell wall expansion. In this article, I review emerging concepts of plant primary cell wall structure, the nature of wall extensibility and the action of expansins, family-9 and -12 endoglucanases, family-16 xyloglucan endotransglycosylase/hydrolase (XTH), and pectin methylesterases, and offer a critical assessment of their wall-loosening activity.
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Affiliation(s)
- Daniel J Cosgrove
- Department of Biology, 208 Mueller Lab, Pennsylvania State University, University Park, PA, USA
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13
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Park YB, Cosgrove DJ. Xyloglucan and its Interactions with Other Components of the Growing Cell Wall. ACTA ACUST UNITED AC 2015; 56:180-94. [DOI: 10.1093/pcp/pcu204] [Citation(s) in RCA: 250] [Impact Index Per Article: 27.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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14
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15
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Stipe wall extension of Flammulina velutipes could be induced by an expansin-like protein from Helix aspersa. Fungal Biol 2013; 118:1-11. [PMID: 24433673 DOI: 10.1016/j.funbio.2013.10.003] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2013] [Revised: 10/06/2013] [Accepted: 10/07/2013] [Indexed: 11/22/2022]
Abstract
Expansin proteins extend plant cell walls by a hydrolysis-free process that disrupts hydrogen bonding between cell wall polysaccharides. However, it is unknown if this mechanism is operative in mushrooms. Herein we report that the native wall extension activity was located exclusively in the 10 mm apical region of 30 mm Flammulina velutipes stipes. The elongation growth was restricted also to the 9 mm apical region of the stipes where the elongation growth of the 1st millimetre was 40-fold greater than that of the 5th millimetre. Therefore, the wall extension activity represents elongation growth of the stipe. The low concentration of expansin-like protein in F. velutipes stipes prevented its isolation. However, we purified an expansin-like protein from snail stomach juice which reconstituted heat-inactivated stipe wall extension without hydrolytic activity. So the previous hypotheses that stipe wall extension was resulted from hydrolysis of wall polymers by enzymes or disruption of hydrogen bonding of wall polymers exclusively by turgor pressure are challenged. We suggest that stipe wall extension may be mediated by endogenous expansin-like proteins that facilitate cell wall polymer slippage by disrupting noncovalent bonding between glucan chains or chitin chains.
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Ekwe E, Morgenstern I, Tsang A, Storms R, Powlowski J. Non-Hydrolytic Cellulose Active Proteins: Research Progress and Potential Application in Biorefineries. Ind Biotechnol (New Rochelle N Y) 2013. [DOI: 10.1089/ind.2013.0010] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Enongene Ekwe
- Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec, Canada
- Department of Chemistry and Biochemistry, Concordia University, Montreal, Quebec, Canada
| | - Ingo Morgenstern
- Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec, Canada
- Department of Biology, Concordia University, Montreal, Quebec, Canada
| | - Adrian Tsang
- Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec, Canada
- Department of Biology, Concordia University, Montreal, Quebec, Canada
| | - Reginald Storms
- Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec, Canada
- Department of Biology, Concordia University, Montreal, Quebec, Canada
| | - Justin Powlowski
- Centre for Structural and Functional Genomics, Concordia University, Montreal, Quebec, Canada
- Department of Chemistry and Biochemistry, Concordia University, Montreal, Quebec, Canada
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17
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Park YB, Cosgrove DJ. A revised architecture of primary cell walls based on biomechanical changes induced by substrate-specific endoglucanases. PLANT PHYSIOLOGY 2012; 158:1933-43. [PMID: 22362871 PMCID: PMC3320196 DOI: 10.1104/pp.111.192880] [Citation(s) in RCA: 249] [Impact Index Per Article: 20.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2011] [Accepted: 02/23/2012] [Indexed: 05/17/2023]
Abstract
Xyloglucan is widely believed to function as a tether between cellulose microfibrils in the primary cell wall, limiting cell enlargement by restricting the ability of microfibrils to separate laterally. To test the biomechanical predictions of this "tethered network" model, we assessed the ability of cucumber (Cucumis sativus) hypocotyl walls to undergo creep (long-term, irreversible extension) in response to three family-12 endo-β-1,4-glucanases that can specifically hydrolyze xyloglucan, cellulose, or both. Xyloglucan-specific endoglucanase (XEG from Aspergillus aculeatus) failed to induce cell wall creep, whereas an endoglucanase that hydrolyzes both xyloglucan and cellulose (Cel12A from Hypocrea jecorina) induced a high creep rate. A cellulose-specific endoglucanase (CEG from Aspergillus niger) did not cause cell wall creep, either by itself or in combination with XEG. Tests with additional enzymes, including a family-5 endoglucanase, confirmed the conclusion that to cause creep, endoglucanases must cut both xyloglucan and cellulose. Similar results were obtained with measurements of elastic and plastic compliance. Both XEG and Cel12A hydrolyzed xyloglucan in intact walls, but Cel12A could hydrolyze a minor xyloglucan compartment recalcitrant to XEG digestion. Xyloglucan involvement in these enzyme responses was confirmed by experiments with Arabidopsis (Arabidopsis thaliana) hypocotyls, where Cel12A induced creep in wild-type but not in xyloglucan-deficient (xxt1/xxt2) walls. Our results are incompatible with the common depiction of xyloglucan as a load-bearing tether spanning the 20- to 40-nm spacing between cellulose microfibrils, but they do implicate a minor xyloglucan component in wall mechanics. The structurally important xyloglucan may be located in limited regions of tight contact between microfibrils.
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18
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Endo A, Tatematsu K, Hanada K, Duermeyer L, Okamoto M, Yonekura-Sakakibara K, Saito K, Toyoda T, Kawakami N, Kamiya Y, Seki M, Nambara E. Tissue-specific transcriptome analysis reveals cell wall metabolism, flavonol biosynthesis and defense responses are activated in the endosperm of germinating Arabidopsis thaliana seeds. PLANT & CELL PHYSIOLOGY 2012; 53:16-27. [PMID: 22147073 DOI: 10.1093/pcp/pcr171] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Seed germination is a result of the competition of embryonic growth potential and mechanical constraint by surrounding tissues such as the endosperm. To understand the processes occurring in the endosperm during germination, we analyzed tiling array expression data on dissected endosperm and embryo from 6 and 24 h-imbibed Arabidopsis seeds. The genes preferentially expressed in the endosperm of both 6 and 24 h-imbibed seeds were enriched for those related to cell wall biosynthesis/modifications, flavonol biosynthesis, defense responses and cellular transport. Loss of function of AtXTH31/XTR8, an endosperm-specific gene for a putative xyloglucan endotransglycosylase/hydrolase, led to faster germination. This suggests that AtXTH31/XTR8 is involved in the reinforcement of the cell wall of the endosperm during germination. In vivo flavonol staining by diphenyl boric acid aminoethyl ester (DPBA) showed flavonols accumulated in the endosperm of both dormant and non-dormant seeds, suggesting that this event is independent of germination. Notably, DPBA fluorescence was also intense in the embryo, but the fluorescent region was diminished around the radicle and lower half of the hypocotyl during germination. DPBA fluorescence was localized in the vacuoles during germination. Vacuolation was not seen in imbibed dormant seeds, suggesting that vacuolation is associated with germination. A gene for δVPE (vacuolar processing enzyme), a caspase-1-like cysteine proteinase involved in cell death, is expressed specifically in endosperms of 24 h-imbibed seeds. The δvpe mutant showed retardation of vacuolation, but this mutation did not affect the kinetics of germination. This suggests that vacuolation is a consequence, and not a trigger, of germination.
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Affiliation(s)
- Akira Endo
- Department of Cell & Systems Biology, University of Toronto, Toronto, Ontario, Canada
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19
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Tabuchi A, Li LC, Cosgrove DJ. Matrix solubilization and cell wall weakening by β-expansin (group-1 allergen) from maize pollen. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2011; 68:546-59. [PMID: 21749508 DOI: 10.1111/j.1365-313x.2011.04705.x] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Beta-expansins accumulate to high levels in grass pollen, a feature apparently unique to grasses. These proteins, which are major human allergens, facilitate pollen tube penetration of the maize stigma and style (the silk). Here we report that treatment of maize silk cell walls with purified β-expansin from maize pollen led to solubilization of wall matrix polysaccharides, dominated by feruloyated highly substituted glucuronoarabinoxylan (60%) and homogalacturonan (35%). Such action was selective for cell walls of grasses, and indicated a target preferentially found in grass cell walls, probably the highly substituted glucuronoarabinoxylan. Several tests for lytic activities by β-expansin were negative and polysaccharide solubilization had weak temperature dependence, which indicated a non-enzymatic process. Concomitant with matrix solubilization, β-expansin treatment induced creep, reduced the breaking force and increased the plastic compliance of wall specimens. From comparisons of the pH dependencies of these processes, we conclude that matrix solubilization was linked closely to changes in wall plasticity and breaking force, but not so closely coupled to cell wall creep. Because matrix solubilization and increased wall plasticity have not been found with other expansins, we infer that these novel activities are linked to the specialized role of grass pollen β-expansins in promotion of penetration of the pollen tube through the stigma and style, most likely by weakening the middle lamella.
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Affiliation(s)
- Akira Tabuchi
- Department of Biology, 208 Mueller Laboratory, Pennsylvania State University, University Park, PA 16802, USA
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20
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Tirumalaraju SV, Jain M, Gallo M. Differential gene expression in roots of nematode-resistant and -susceptible peanut (Arachis hypogaea) cultivars in response to early stages of peanut root-knot nematode (Meloidogyne arenaria) parasitization. JOURNAL OF PLANT PHYSIOLOGY 2011; 168:481-92. [PMID: 20863592 DOI: 10.1016/j.jplph.2010.08.006] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2010] [Revised: 08/17/2010] [Accepted: 08/19/2010] [Indexed: 05/10/2023]
Abstract
The peanut root-knot nematode (RKN, Meloidogyne arenaria) can cause significant yield losses in cultivated peanut (Arachis hypogaea). However, molecular events underlying successful RKN infection and host responses in peanut are sparsely understood. Using suppression subtractive hybridization (SSH), cDNA libraries, enriched with differentially expressed ESTs, were constructed from RKN-challenged root tissues in the pre-penetration and early infection stages from near-isogenic nematode-resistant and -susceptible peanut cultivars NemaTAM and Florunner. Following an initial screen of 960 expressed sequence tags (ESTs) for at least three-fold differential expression between the two libraries, 70 ESTs (36 from the NemaTAM-specific library and 34 from the Florunner-specific library) were identified and annotated into seven functional categories (stress responses, metabolism, transcriptional regulation, protein synthesis and/or modification, transport functions, cellular architecture and proteins with unknown functions). Discreet gene tag clusters primarily including pathogenesis related (PR), patatin-like proteins and universal stress related proteins (USPs), as well as those implicated in alleviation of oxidative stress were primarily represented in RKN-infected NemaTAM roots, reflective of a basal level of resistance operative against invading nematodes. However, significant transcriptional reprogramming and upregulation of genes implicated in modification of cellular architecture, adhesion, and proliferation marked an early onset of compatible host-pathogen interactions discernible in Florunner roots.
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21
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Miedes E, Zarra I, Hoson T, Herbers K, Sonnewald U, Lorences EP. Xyloglucan endotransglucosylase and cell wall extensibility. JOURNAL OF PLANT PHYSIOLOGY 2011; 168:196-203. [PMID: 20828871 DOI: 10.1016/j.jplph.2010.06.029] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2010] [Revised: 06/30/2010] [Accepted: 06/30/2010] [Indexed: 05/21/2023]
Abstract
Transgenic tomato hypocotyls with altered levels of an XTH gene were used to study how XET activity could affect the hypocotyl growth and cell wall extensibility. Transgenic hypocotyls showed significant over-expression (line 13) or co-suppression (line 33) of the SlXTH1 in comparison with the wild type, with these results being correlated with the results on specific soluble XET activity, suggesting that SlXTH1 translates mainly for a soluble XET isoenzyme. A relationship between XET activity and cell wall extensibility was found, and the highest total extensibility was located in the apical hypocotyl segment of the over-expressing SlXTH1 line, where the XET-specific activity and hypocotyl growth were also highest compared with the wild line. Also, in the co-suppression SlXTH1 line, total extensibility values were lower than in the wild type line. The study of linkages between cell wall polysaccharides by FTIR showed that hypocotyls over-expressing SlXTH1 and having a higher XET-specific activity, were grouped away from the wild line, indicating that the linkages between pectins and between cellulose and xyloglucans might differ. These results suggested that the action of the increased XET activity in the transgenic line could be responsible for the cell wall structural changes, and therefore, alter the cell wall extensibility. On the other hand, results on xyloglucan oligosaccharides composition of the xyloglucan by MALDI TOF-MS showed no differences between lines, indicating that the xyloglucan structure was not affected by the XET action. These results provide evidences that XTHs from group I are involved mainly in the restructuring of the cell wall during growth and development, but they are not the limiting factor for plant growth.
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Affiliation(s)
- E Miedes
- Dpto Biología Vegetal, Facultad de Farmacia, Universidad de Valencia, 46100 Burjassot, Valencia, Spain
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22
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Abstract
While an increase in the number of xyloglucan tethers between the cellulose microfibrils in plant cell walls increases the walls' rigidity, the degradation of these tethers causes the walls to loosen. Degradation can occur either through the integration of xyloglucan oligosaccharides due to the action of xyloglucan endotransglucosylase or through direct hydrolysis due to the action of xyloglucanase. This is why the addition of xyloglucan and its fragment oligosaccharides causes plant tissue tension to increase and decrease so dramatically. Experiments involving the overexpression of xyloglucanase and cellulase have revealed the roles of xyloglucans in the walls. The degradation of wall xyloglucan in poplar by the transgenic expression of xyloglucanase, for example, not only accelerated stem elongation in the primary wall, but also blocked upright-stem gravitropism in the secondary wall. Overexpression of cellulase also reduced xyloglucan content in the walls as cellulose microfibrils were trimmed at their amorphous region, resulting in increased cell volume in Arabidopsis leaves and in sengon with disturbed leaf movements. The hemicellulose xyloglucan, in its function as a tether, plays a key role in the loosening and tightening of cellulose microfibrils: it enables the cell to change its shape in growth and differentiation zones and to retain its final shape after cell maturation.
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Affiliation(s)
- Takahisa Hayashi
- Department of Bioscience, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo 156-8502, Japan.
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23
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Wei W, Yang C, Luo J, Lu C, Wu Y, Yuan S. Synergism between cucumber alpha-expansin, fungal endoglucanase and pectin lyase. JOURNAL OF PLANT PHYSIOLOGY 2010; 167:1204-10. [PMID: 20478643 DOI: 10.1016/j.jplph.2010.03.017] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2010] [Revised: 03/23/2010] [Accepted: 03/24/2010] [Indexed: 05/11/2023]
Abstract
Several recombinant fungal enzymes (endoglucanase and pectinase) were studied for their interactions with alpha-expansin in cell wall extension and polysaccharide degradation. Both Cel12A and Cel5A were able to hydrolyze cellulose CMC-Na and mixed-linkage beta-glucan. In contrast to Cel5A, Cel12A could also hydrolyze xyloglucan and induce wall extension of cucumber hypocotyls in an in vitro assay. Combining alpha-expansin, even at high concentrations, with Cel12A did not enhance the maximum/final wall extension rate induced by Cel12A alone. These results strongly suggest that modification/degradation of the xyloglucan molecule/network is the key for cell wall extension, and alpha-expansin and Cel12A may share the same acting site in the substrate. Pectinase (Pel1, a pectin lyase) enhanced alpha-expansin-induced wall extension in a concentration-dependent manner, suggesting that the pectin network may normally regulate accessibility of expansin to the xyloglucan-cellulose complex. alpha-Expansin enhanced Cel12A's hydrolytic activity on cellulose CMC-Na but not on xyloglucan and beta-glucan. Expansin did not affect Cel5A's hydrolytic activity. Interestingly, expansin also enhanced Pel1's activity on degrading high esterified pectin. A potential explanation for why expansin could synergistically interact with only certain enzymes on specific polysaccharides is discussed. Additional results also suggested that cell wall swelling may not be a significant event during the action of expansin and hydrolases.
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Affiliation(s)
- Wei Wei
- Jiangsu Engineering and Technology Research Center for Industrialization of Microbial Resources, Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Science, Nanjing Normal University, Nanjing, PR China
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24
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Xu Z, Kohel RJ, Song G, Cho J, Alabady M, Yu J, Koo P, Chu J, Yu S, Wilkins TA, Zhu Y, Yu JZ. Gene-rich islands for fiber development in the cotton genome. Genomics 2008; 92:173-83. [PMID: 18619771 DOI: 10.1016/j.ygeno.2008.05.010] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2008] [Revised: 03/31/2008] [Accepted: 05/16/2008] [Indexed: 10/21/2022]
Abstract
Cotton fiber is an economically important seed trichome and the world's leading natural fiber used in the manufacture of textiles. As a step toward elucidating the genomic organization and distribution of gene networks responsible for cotton fiber development, we investigated the distribution of fiber genes in the cotton genome. Results revealed the presence of gene-rich islands for fiber genes with a biased distribution in the tetraploid cotton (Gossypium hirsutum L.) genome that was also linked to discrete fiber developmental stages based on expression profiles. There were 3 fiber gene-rich islands associated with fiber initiation on chromosome 5, 3 islands for the early to middle elongation stage on chromosome 10, 3 islands for the middle to late elongation stage on chromosome 14, and 1 island on chromosome 15 for secondary cell wall deposition, for a total of 10 fiber gene-rich islands. Clustering of functionally related gene clusters in the cotton genome displaying similar transcriptional regulation indicates an organizational hierarchy with significant implications for the genetic enhancement of particular fiber quality traits. The relationship between gene-island distribution and functional expression profiling suggests for the first time the existence of functional coupling gene clusters in the cotton genome.
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Affiliation(s)
- Zhanyou Xu
- USDA-ARS, Crop Germplasm Research Unit, College Station, TX 77845, USA
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25
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Ikushima T, Soga K, Hoson T, Shimmen T. Role of xyloglucan in gravitropic bending of azuki bean epicotyl. PHYSIOLOGIA PLANTARUM 2008; 132:552-565. [PMID: 18248506 DOI: 10.1111/j.1399-3054.2007.01047.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
The mechanism of the gravitropic bending was studied in azuki bean epicotyls. The cell wall extensibility of the lower side became higher than that of the upper side in the epicotyl bending upward. The contents of matrix polysaccharides of the cell wall (pectin and xyloglucan in hemicellulose-II) in the lower side became smaller than those in the upper side. The molecular mass of xyloglucans in the lower side decreased. After an epicotyl was fixed to a metal rod to prevent the bending, gravistimulation was applied. Fundamentally the same results were obtained with respect to rheological and chemical characteristics of the cell wall as those of epicotyls showing gravitropic bending. The present results suggested that the initial gravitropic bending was caused by the increase in extensibility of the lower side and the decrease in extensibility of the upper side via the change of the cell wall matrix, especially xyloglucans.
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Affiliation(s)
- Toshimitsu Ikushima
- Department of Life Science, Graduate School of Life Science, University of Hyogo, 3-2-1, Kouto, Kamigori-cho, Ako-gun, Hyogo, 678-1297, Japan.
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26
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Ishimaru M, Smith DL, Gross KC, Kobayashi S. Expression of three expansin genes during development and maturation of Kyoho grape berries. JOURNAL OF PLANT PHYSIOLOGY 2007; 164:1675-82. [PMID: 17175064 DOI: 10.1016/j.jplph.2006.07.017] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2006] [Accepted: 07/11/2006] [Indexed: 05/04/2023]
Abstract
Expansins are cell-wall-localized proteins that induce loosening of isolated plant cell walls in vitro in a pH-dependent manner, but exhibit no detectable hydrolase or transglycosylase activity. Three putative expansin cDNAs, Vlexp1, Vlexp2, and Vlexp3 were isolated from a cDNA library made from mature berries of the Kyoho grape. Expression profiles of the 3 genes were analyzed throughout berry development. Accumulation of the Vlexp3 transcript was closely correlated with berry softening, and expression of this gene was detected before véraison and markedly increased at véraison (onset of berry softening). Expression of Vlexp3 was berry-specific. Vlexp1 and Vlexp2 mRNA accumulation began during the expansion stage of berry development and expression increased for both genes during ripening. Vlexp1 and Vlexp2 mRNA was detected in leaf, tendril and flower tissues and Vlexp2 mRNA was additionally detected in root and seed tissues. These findings suggest that the three expansin genes are associated with cell division or expansion and berry ripening. Vlexp3, in particular, is most likely to play a role in grape berry softening at véraison.
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Affiliation(s)
- Megumi Ishimaru
- Graduate School of Agriculture and Biological Sciences, Osaka Prefecture University, Sakai, Osaka 599-8531, Japan.
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27
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Abstract
The expansin superfamily of plant proteins is made up of four families, designated alpha-expansin, beta-expansin, expansin-like A and expansin-like B. alpha-Expansin and beta-expansin proteins are known to have cell-wall loosening activity and to be involved in cell expansion and other developmental events during which cell-wall modification occurs. Proteins in these two families bind tightly to the cell wall and their activity is typically assayed by their stimulation of cell-wall extension and stress relaxation; no bona fide enzymatic activity has been detected for these proteins. Alpha-expansin proteins and some, but not all, beta-expansin proteins are implicated as catalysts of 'acid growth', the enlargement of plant cells stimulated by low extracellular pH. A divergent group of beta-expansin genes are expressed at high levels in the pollen of grasses but not of other plant groups. They probably function to loosen maternal cell walls during growth of the pollen tube towards the ovary. All expansins consist of two domains; domain 1 is homologous to the catalytic domain of proteins in the glycoside hydrolase family 45 (GH45); expansin domain 2 is homologous to group-2 grass pollen allergens, which are of unknown biological function. Experimental evidence suggests that expansins loosen cell walls via a nonenzymatic mechanism that induces slippage of cellulose microfibrils in the plant cell wall.
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Affiliation(s)
- Javier Sampedro
- Department of Biology, Pennsylvania State University, 208 Mueller Lab, University Park, PA 16870, USA
| | - Daniel J Cosgrove
- Department of Biology, Pennsylvania State University, 208 Mueller Lab, University Park, PA 16870, USA
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28
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Abstract
Plant cells encase themselves within a complex polysaccharide wall, which constitutes the raw material that is used to manufacture textiles, paper, lumber, films, thickeners and other products. The plant cell wall is also the primary source of cellulose, the most abundant and useful biopolymer on the Earth. The cell wall not only strengthens the plant body, but also has key roles in plant growth, cell differentiation, intercellular communication, water movement and defence. Recent discoveries have uncovered how plant cells synthesize wall polysaccharides, assemble them into a strong fibrous network and regulate wall expansion during cell growth.
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Affiliation(s)
- Daniel J Cosgrove
- Department of Biology, 208 Mueller Laboratory, Penn State University, University Park, Pennsylvania 16802, USA.
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29
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Balestrini R, Cosgrove DJ, Bonfante P. Differential location of alpha-expansin proteins during the accommodation of root cells to an arbuscular mycorrhizal fungus. PLANTA 2005; 220:889-99. [PMID: 15605243 DOI: 10.1007/s00425-004-1431-2] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2004] [Accepted: 10/18/2004] [Indexed: 05/06/2023]
Abstract
alpha-Expansins are extracellular proteins that increase plant cell-wall extensibility. We analysed their pattern of expression in cucumber roots in the presence and in the absence of the mycorrhizal fungus, Glomus versiforme. The distribution of alpha-expansins was investigated by use of two polyclonal antibodies (anti-EXPA1 and anti-EXPA2, prepared against two different cucumber alpha-expansins) in immunoblotting, immunofluorescence, and immunogold experiments. Immunoblot results indicate the presence of a 30-kDa band specific for mycorrhizal roots. The two antibodies identify antigens with a different distribution in mycorrhizal roots: anti-EXPA1 labels the interface zone, but the plant cell walls only weakly. By contrast, the anti-EXPA2 labels only the plant cell walls. In order to understand the potential role of alpha-expansins during the accommodation of the fungus inside root cells, we prepared semi-thin sections to measure the size of cortical cells and the thickness of cortical cell walls in mycorrhizal and non-mycorrhizal root. Mycorrhizal cortical cells were significantly larger than non-mycorrhizal cells and had thicker cell walls. In double-labelling experiments with cellobiohydrolase-gold complex, we observed that cellulose was co-localized with alpha-expansins. Taken together, the results demonstrate that alpha-expansins are more abundant in the cucumber cell walls upon mycorrhizal infection; we propose that these wall-loosening proteins are directly involved in the accommodation of the fungus by infected cortical cells.
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Affiliation(s)
- R Balestrini
- Istituto per la Protezione delle Piante del CNR, Sezione di Micologia and Dipartimento di Biologia Vegetale dell'Università, Viale Mattioli 25, 10125, Turin, Italy
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30
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Liszkay A, van der Zalm E, Schopfer P. Production of reactive oxygen intermediates (O(2)(.-), H(2)O(2), and (.)OH) by maize roots and their role in wall loosening and elongation growth. PLANT PHYSIOLOGY 2004; 136:3114-23; discussion 3001. [PMID: 15466236 PMCID: PMC523372 DOI: 10.1104/pp.104.044784] [Citation(s) in RCA: 329] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2004] [Revised: 06/23/2004] [Accepted: 06/28/2004] [Indexed: 05/18/2023]
Abstract
Cell extension in the growing zone of plant roots typically takes place with a maximum local growth rate of 50% length increase per hour. The biochemical mechanism of this dramatic growth process is still poorly understood. Here we test the hypothesis that the wall-loosening reaction controlling root elongation is effected by the production of reactive oxygen intermediates, initiated by a NAD(P)H oxidase-catalyzed formation of superoxide radicals (O(2)(.-)) at the plasma membrane and culminating in the generation of polysaccharide-cleaving hydroxyl radicals ((.)OH) by cell wall peroxidase. The following results were obtained using primary roots of maize (Zea mays) seedlings as experimental material. (1) Production of O(2)(.-), H(2)O(2), and (.)OH can be demonstrated in the growing zone using specific histochemical assays and electron paramagnetic resonance spectroscopy. (2) Auxin-induced inhibition of growth is accompanied by a reduction of O(2)(.-) production. (3) Experimental generation of (.)OH in the cell walls with the Fenton reaction causes wall loosening (cell wall creep), specifically in the growing zone. Alternatively, wall loosening can be induced by (.)OH produced by endogenous cell wall peroxidase in the presence of NADH and H(2)O(2). (4) Inhibition of endogenous (.)OH formation by O(2)(.-) or (.)OH scavengers, or inhibitors of NAD(P)H oxidase or peroxidase activity, suppress elongation growth. These results show that juvenile root cells transiently express the ability to generate (.)OH, and to respond to (.)OH by wall loosening, in passing through the growing zone. Moreover, inhibitor studies indicate that (.)OH formation is essential for normal root growth.
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Affiliation(s)
- Anja Liszkay
- Institut für Biologie II der Universität, D-79104 Freiburg, Germany
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Sánchez MA, Mateos I, Labrador E, Dopico B. Brassinolides and IAA induce the transcription of four alpha-expansin genes related to development in Cicer arietinum. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2004; 42:709-16. [PMID: 15474376 DOI: 10.1016/j.plaphy.2004.07.004] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2004] [Accepted: 07/15/2004] [Indexed: 04/30/2023]
Abstract
Four different cDNAs encoding alpha-expansins have been identified in Cicer arietinum (Ca-EXPA1, Ca-EXPA2, Ca-EXPA3 and Ca-EXPA4). The shared amino acid sequence similarity among the four alpha-expansin proteins ranged from 67 to 89%. All of them display common characteristics such as molecular mass (around 24 kDa), amino acid numbers, and also the presence of a signal peptide. The transcription pattern of chickpea alpha-expansin genes in seedlings and plants suggests a specific role for each of the four alpha-expansins in different phases of development or in different plant organs. High levels of Ca-EXPA2 transcripts coincide with maximum epicotyl and stem growth, indicating an important involvement of this particular alpha-expansin in elongating tissues. Ca-EXPA3 would be related to radicle development, while Ca-EXPA4 seems to be involved in pod development. A considerable increase in the level of all Ca-EXPA transcripts accompanied the indole acetic acid (IAA) plus brassinolide (BR)-induced elongation of excised epicotyl segments. This IAA + BR induction was seen even for the chickpea expansin genes whose transcription was not affected by IAA or BR alone.
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Affiliation(s)
- Ma Angeles Sánchez
- Departamento de Fisiología Vegetal, Facultad de Biología, Centro Hispano-Luso de Investigaciones Agrarias, Universidad de Salamanca, Pza Doctores de la Reina s/n, Salamanca 37007, Spain
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32
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Chanliaud E, De Silva J, Strongitharm B, Jeronimidis G, Gidley MJ. Mechanical effects of plant cell wall enzymes on cellulose/xyloglucan composites. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2004; 38:27-37. [PMID: 15053757 DOI: 10.1111/j.1365-313x.2004.02018.x] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Xyloglucan-acting enzymes are believed to have effects on type I primary plant cell wall mechanical properties. In order to get a better understanding of these effects, a range of enzymes with different in vitro modes of action were tested against cell wall analogues (bio-composite materials based on Acetobacter xylinus cellulose and xyloglucan). Tomato pericarp xyloglucan endo transglycosylase (tXET) and nasturtium seed xyloglucanase (nXGase) were produced heterologously in Pichia pastoris. Their action against the cell wall analogues was compared with that of a commercial preparation of Trichoderma endo-glucanase (EndoGase). Both 'hydrolytic' enzymes (nXGase and EndoGase) were able to depolymerise not only the cross-link xyloglucan fraction but also the surface-bound fraction. Consequent major changes in cellulose fibril architecture were observed. In mechanical terms, removal of xyloglucan cross-links from composites resulted in increased stiffness (at high strain) and decreased visco-elasticity with similar extensibility. On the other hand, true transglycosylase activity (tXET) did not affect the cellulose/xyloglucan ratio. No change in composite stiffness or extensibility resulted, but a significant increase in creep behaviour was observed in the presence of active tXET. These results provide direct in vitro evidence for the involvement of cell wall xyloglucan-specific enzymes in mechanical changes underlying plant cell wall re-modelling and growth processes. Mechanical consequences of tXET action are shown to be complimentary to those of cucumber expansin.
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Affiliation(s)
- Elisabeth Chanliaud
- Unilever Research Colworth, Colworth House, Sharnbrook, Bedford MK44 1LQ, UK
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Peña MJ, Ryden P, Madson M, Smith AC, Carpita NC. The galactose residues of xyloglucan are essential to maintain mechanical strength of the primary cell walls in Arabidopsis during growth. PLANT PHYSIOLOGY 2004; 134:443-51. [PMID: 14730072 PMCID: PMC316323 DOI: 10.1104/pp.103.027508] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2003] [Revised: 06/18/2003] [Accepted: 08/26/2003] [Indexed: 05/20/2023]
Abstract
In land plants, xyloglucans (XyGs) tether cellulose microfibrils into a strong but extensible cell wall. The MUR2 and MUR3 genes of Arabidopsis encode XyG-specific fucosyl and galactosyl transferases, respectively. Mutations of these genes give precisely altered XyG structures missing one or both of these subtending sugar residues. Tensile strength measurements of etiolated hypocotyls revealed that galactosylation rather than fucosylation of the side chains is essential for maintenance of wall strength. Symptomatic of this loss of tensile strength is an abnormal swelling of the cells at the base of fully grown hypocotyls as well as bulging and marked increase in the diameter of the epidermal and underlying cortical cells. The presence of subtending galactosyl residues markedly enhance the activities of XyG endotransglucosylases and the accessibility of XyG to their action, indicating a role for this enzyme activity in XyG cleavage and religation in the wall during growth for maintenance of tensile strength. Although a shortening of XyGs that normally accompanies cell elongation appears to be slightly reduced, galactosylation of the XyGs is not strictly required for cell elongation, for lengthening the polymers that occurs in the wall upon secretion, or for binding of the XyGs to cellulose.
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Affiliation(s)
- María J Peña
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907, USA
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Abstract
Expansins are now generally accepted to be key regulators of wall extension during growth. Several alternative roles for expansins have emerged in which the emphasis of their action is on wall breakdown or softening in processes such as fruit ripening, pollination, germination and abscission. Expansins are commonly encoded by substantial gene families and have classically been divided into two subfamilies, referred to as alpha- and beta-expansins. Two further subfamilies have now been identified: gamma-expansins, which were first described in Arabidopsis, and delta-expansins, which were identified in rice and are absent from Arabidopsis. Both are truncated versions of alpha- and beta-expansins, with gamma-expansins representing the amino-terminal half of a mature expansin and delta-expansins the carboxy-terminal half of a beta-expansin. Functional roles for gamma- and delta-expansins have yet to be defined, although recent data indicate a signalling role for gamma-expansins.
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Affiliation(s)
- Yi Li
- CNAP, Biology Department, University of York, PO Box 373, York YO10 4YW, UK
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Hiwasa K, Rose JKC, Nakano R, Inaba A, Kubo Y. Differential expression of seven alpha-expansin genes during growth and ripening of pear fruit. PHYSIOLOGIA PLANTARUM 2003; 117:564-572. [PMID: 12675747 DOI: 10.1034/j.1399-3054.2003.00064.x] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Seven cDNAs, designated PcExp1 to PcExp7, encoding expansin homologues, were isolated from mature pear fruit and their expression profiles were investigated in ripening fruit and other tissues, and in response to ethylene. Accumulation of PcExp2, -3, -5 and -6 mRNA increased markedly with fruit softening and then declined at the over-ripe stage. Treatment of fruit at an early ripening stage with 1-methylcyclopropene (MCP), an inhibitor of ethylene action, suppressed ethylene biosynthesis, fruit softening and the accumulation of the expansin mRNAs. Conversely, propylene treatment at the preclimacteric stage induced accumulation of the same four expansin genes, as well as ethylene production and fruit softening. The expression patterns correlated with alteration in the rate and extent of fruit softening. The abundance of PcExp1 mRNA increased at the late expanding phase of fruit development and further increased during ripening, whereas PcExp4 mRNA levels were constant throughout fruit growth and ripening. The MCP and propylene treatments had little effect on PcExp1 and PcExp4 expression. PcExp7 was expressed in young but not mature fruit. PcExp4 and PcExp6 mRNA was also detected in flowers. The accumulation of PcExp4, -5, -6 and -7 mRNA was more abundant in young growing tissues, but not in fully expanded tissues, suggesting roles for these genes in cell expansion. These results demonstrate that characteristically, multiple expansin genes show differential expression and hormonal regulation during pear fruit development and at least six expansins show overlapping expression during ripening.
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Affiliation(s)
- Kyoko Hiwasa
- Graduate School of Natural Science and Technology, Okayama University, Tsushima, Okayama, 700-8530 Japan Department of Plant Biology, 228 Plant Science Building, Cornell University, Ithaca, NY 14853 USA Laboratory of Postharvest Agriculture, Faculty of Agriculture, Okayama University, Tsushima, Okayama, 700-8530 Japan
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36
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Vissenberg K, Van Sandt V, Fry SC, Verbelen JP. Xyloglucan endotransglucosylase action is high in the root elongation zone and in the trichoblasts of all vascular plants from Selaginella to Zea mays. JOURNAL OF EXPERIMENTAL BOTANY 2003; 54:335-344. [PMID: 12493861 DOI: 10.1093/jxb/erg024] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The endotransglucosylase action of the enzyme xyloglucan endotransglucosylase/hydrolase (XTH) was localized in the roots of diverse vascular plants: club-mosses (lycopodiophytes), ferns, gymnosperms, monocots, and dicots. High action was always found in the epidermis cell wall of the elongation zone and in trichoblasts in the differentiation zone. Clearly XTH and its action in root development evolved before the evolutionary divergence of ferns and seed plants and also of the lycopodiophytes and euphyllophytes.
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Affiliation(s)
- K Vissenberg
- Laboratory of Plant Physiology and Morphology, Department of Biology, University of Antwerp (UIA), Universiteitsplein 1, B-2610 Wilrijk, Belgium
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37
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Cosgrove DJ, Li LC, Cho HT, Hoffmann-Benning S, Moore RC, Blecker D. The growing world of expansins. PLANT & CELL PHYSIOLOGY 2002; 43:1436-44. [PMID: 12514240 DOI: 10.1093/pcp/pcf180] [Citation(s) in RCA: 204] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
Expansins are cell wall proteins that induce pH-dependent wall extension and stress relaxation in a characteristic and unique manner. Two families of expansins are known, named alpha- and beta-expansins, and they comprise large multigene families whose members show diverse organ-, tissue- and cell-specific expression patterns. Other genes that bear distant sequence similarity to expansins are also represented in the sequence databases, but their biological and biochemical functions have not yet been uncovered. Expansin appears to weaken glucan-glucan binding, but its detailed mechanism of action is not well established. The biological roles of expansins are diverse, but can be related to the action of expansins to loosen cell walls, for example during cell enlargement, fruit softening, pollen tube and root hair growth, and abscission. Expansin-like proteins have also been identified in bacteria and fungi, where they may aid microbial invasion of the plant body.
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Affiliation(s)
- Daniel J Cosgrove
- Department of Biology, Pennsylvania State University, University Park, PA 16802, USA.
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38
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Rose JKC, Braam J, Fry SC, Nishitani K. The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: current perspectives and a new unifying nomenclature. PLANT & CELL PHYSIOLOGY 2002; 43:1421-35. [PMID: 12514239 DOI: 10.1093/pcp/pcf171] [Citation(s) in RCA: 467] [Impact Index Per Article: 21.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
The polysaccharide xyloglucan is thought to play an important structural role in the primary cell wall of dicotyledons. Accordingly, there is considerable interest in understanding the biochemical basis and regulation of xyloglucan metabolism, and research over the last 16 years has identified a large family of cell wall proteins that specifically catalyze xyloglucan endohydrolysis and/or endotransglucosylation. However, a confusing and contradictory series of nomenclatures has emerged in the literature, of which xyloglucan endotransglycosylases (XETs) and endoxyloglucan transferases (EXGTs) are just two examples, to describe members of essentially the same class of genes/proteins. The completion of the first plant genome sequencing projects has revealed the full extent of this gene family and so this is an opportune time to resolve the many discrepancies in the database that include different names being assigned to the same gene. Following consultation with members of the scientific community involved in plant cell wall research, we propose a new unifying nomenclature that conveys an accurate description of the spectrum of biochemical activities that cumulative research has shown are catalyzed by these enzymes. Thus, a member of this class of genes/proteins will be referred to as a xyloglucan endotransglucosylase/hydrolase (XTH). The two known activities of XTH proteins are referred to enzymologically as xyloglucan endotransglucosylase (XET, which is hereby re-defined) activity and xyloglucan endohydrolase (XEH) activity. This review provides a summary of the biochemical and functional diversity of XTHs, including an overview of the structure and organization of the Arabidopsis XTH gene family, and highlights the potentially important roles that XTHs appear to play in numerous examples of plant growth and development.
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Affiliation(s)
- Jocelyn K C Rose
- Department of Plant Biology, 228 Plant Science Building, Cornell University, Ithaca, NY 14853, USA.
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39
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Takeda T, Furuta Y, Awano T, Mizuno K, Mitsuishi Y, Hayashi T. Suppression and acceleration of cell elongation by integration of xyloglucans in pea stem segments. Proc Natl Acad Sci U S A 2002; 99:9055-60. [PMID: 12084943 PMCID: PMC124422 DOI: 10.1073/pnas.132080299] [Citation(s) in RCA: 155] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2002] [Indexed: 11/18/2022] Open
Abstract
Xyloglucan is a key polymer in the walls of growing plant cells. Using split pea stem segments and stem segments from which the epidermis had been peeled off, we demonstrate that the integration of xyloglucan mediated by the action of wall-bound xyloglucan endotransglycosylase suppressed cell elongation, whereas that of its fragment oligosaccharide accelerated it. Whole xyloglucan was incorporated into the cell wall and induced the rearrangement of cortical microtubules from transverse to longitudinal; in contrast, the oligosaccharide solubilized xyloglucan from the cell wall and maintained the microtubules in a transverse orientation. This paper proposes that xyloglucan metabolism controls the elongation of plant cells.
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Affiliation(s)
- Takumi Takeda
- Wood Research Institute, Kyoto University, Gokasho, Uji 611-0011, Japan
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40
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Li Y, Darley CP, Ongaro V, Fleming A, Schipper O, Baldauf SL, McQueen-Mason SJ. Plant expansins are a complex multigene family with an ancient evolutionary origin. PLANT PHYSIOLOGY 2002; 128:854-64. [PMID: 11891242 PMCID: PMC152199 DOI: 10.1104/pp.010658] [Citation(s) in RCA: 138] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2001] [Revised: 10/30/2001] [Accepted: 11/21/2001] [Indexed: 05/18/2023]
Abstract
Expansins are a group of extracellular proteins that directly modify the mechanical properties of plant cell walls, leading to turgor-driven cell extension. Within the completely sequenced Arabidopsis genome, we identified 38 expansin sequences that fall into three discrete subfamilies. Based on phylogenetic analysis and shared intron patterns, we propose a new, systematic nomenclature of Arabidopsis expansins. Further phylogenetic analysis, including expansin sequences found here in monocots, pine (Pinus radiata, Pinus taeda), fern (Regnellidium diphyllum, Marsilea quadrifolia), and moss (Physcomitrella patens) indicate that the three plant expansin subfamilies arose and began diversifying very early in, if not before, colonization of land by plants. Closely related "expansin-like" sequences were also identified in the social amoeba, Dictyostelium discoidium, suggesting that these wall-modifying proteins have a very deep evolutionary origin.
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Affiliation(s)
- Yi Li
- Department of Biology, University of York, York YO10 5YW, United Kingdom
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41
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Kaku T, Tabuchi A, Wakabayashi K, Kamisaka S, Hoson T. Action of xyloglucan hydrolase within the native cell wall architecture and its effect on cell wall extensibility in azuki bean epicotyls. PLANT & CELL PHYSIOLOGY 2002; 43:21-6. [PMID: 11828018 DOI: 10.1093/pcp/pcf004] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
Xyloglucan hydrolase (XGH) has recently been purified from the cell wall of azuki bean (Vigna angularis Ohwi et Ohashi) epicotyls as a new type of xyloglucan-degrading enzyme [Tabuchi et al. (2001) Plant Cell Physiol. 42: 154]. In the present study, the effects of XGH on the mechanical properties of the cell wall and on the level and the molecular size of xyloglucans within the native wall architecture were examined in azuki bean epicotyls. When the epidermal tissue strips from the growing regions of azuki bean epicotyls were incubated with XGH, the mechanical extensibility of the cell wall dramatically increased. XGH exogenously applied to cell wall materials (homogenates) or epidermal tissue strips decreased the amount of xyloglucans via the solubilization of the polysaccharides. Also, XGH substantially decreased the molecular mass of xyloglucans in both materials. These results indicate that XGH is capable of hydrolyzing xyloglucans within the native cell wall architecture and thereby increasing the cell wall extensibility in azuki bean epicotyls.
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Affiliation(s)
- Tomomi Kaku
- Department of Biological Sciences, Graduate School of Science, Osaka City University, Sugimoto, Sumiyoshi-ku, Osaka, 558-8585 Japan
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42
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Mølhøj M, Ulvskov P, Dal Degan F. Characterization of a functional soluble form of a Brassica napus membrane-anchored endo-1,4-beta-glucanase heterologously expressed in Pichia pastoris. PLANT PHYSIOLOGY 2001; 127:674-84. [PMID: 11598241 PMCID: PMC125102 DOI: 10.1104/pp.010269] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2001] [Revised: 05/16/2001] [Accepted: 07/06/2001] [Indexed: 05/18/2023]
Abstract
The Brassica napus gene, Cel16, encodes a membrane-anchored endo-1,4-beta-glucanase with a deduced molecular mass of 69 kD. As for other membrane-anchored endo-1,4-beta-glucanases, Cel16 consists of a predicted intracellular, charged N terminus (methionine(1)-lysine(70)), a hydrophobic transmembrane domain (isoleucine(71)-valine(93)), and a periplasmic catalytic core (lysine(94)-proline(621)). Here, we report the functional analysis of Delta(1-90)Cel16, the N terminally truncated Cel16, missing residues 1 through 90 and comprising the catalytic domain of Cel16 expressed recombinantly in the methylotrophic yeast Pichia pastoris as a soluble protein. A two-step purification protocol yielded Delta(1-90)Cel16 in a pure form. The molecular mass of Delta(1-90)Cel16, when determined by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, was about 130 kD and about 60 kD after enzymatic removal of N-glycans, fitting the expected molecular mass of 59 kD. Delta(1-90)Cel16 was highly N glycosylated as compared with the native B. napus Cel16 protein. Delta(1-90)Cel16 had a pH optimum of 6.0. The activity of Delta(1-90)Cel16 was inhibited by EDTA and exhibited a strong dependence on calcium. Delta(1-90)Cel16 showed substrate specificity for low substituted carboxymethyl-cellulose and amorphous cellulose. It did not hydrolyze crystalline cellulose, xyloglycan, xylan, (1-->3),(1-->4)-beta-D-glucan, the highly substituted hydroxyethylcellulose, or the oligosaccharides cellotriose, cellotetraose, cellopentaose, or xylopentaose. Size exclusion analysis of Delta(1-90)Cel16-hydrolyzed carboxymethylcellulose showed that Delta(1-90)Cel16 is a true endo-acting glucanase.
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Affiliation(s)
- M Mølhøj
- Biotechnology Group and Center for Molecular Plant Physiology (PlaCe), Danish Institute of Agricultural Sciences, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Denmark
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43
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Cosgrove DJ. Enzymes and other agents that enhance cell wall extensibility. ANNUAL REVIEW OF PLANT PHYSIOLOGY AND PLANT MOLECULAR BIOLOGY 2001; 50:391-417. [PMID: 11541953 DOI: 10.1146/annurev.arplant.50.1.391] [Citation(s) in RCA: 442] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Polysaccharides and proteins are secreted to the inner surface of the growing cell wall, where they assemble into a network that is mechanically strong, yet remains extensible until the cells cease growth. This review focuses on the agents that directly or indirectly enhance the extensibility properties of growing walls. The properties of expansins, endoglucanases, and xyloglucan transglycosylases are reviewed and their postulated roles in modulating wall extensibility are evaluated. A summary model for wall extension is presented, in which expansin is a primary agent of wall extension, whereas endoglucanases, xyloglucan endotransglycosylase, and other enzymes that alter wall structure act secondarily to modulate expansin action.
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Affiliation(s)
- D J Cosgrove
- Department of Biology, Pennsylvania State University, University Park 16802, USA.
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44
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Reidy B, Nösberger J, Fleming A. Differential expression of XET-related genes in the leaf elongation zone of F. pratensis. JOURNAL OF EXPERIMENTAL BOTANY 2001; 52:1847-1856. [PMID: 11520873 DOI: 10.1093/jexbot/52.362.1847] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Festuca pratensis Huds. is a forage grass with the ability to withstand harsh climatic conditions. However, its potential agronomic use is limited by its poor competitive ability, which can be traced to limitations in leaf growth. In order to characterize this process and to identify genes which might function as markers for leaf growth, three XET-related genes in the leaf elongation zone (LEZ) of F. pratensis are reported. A detailed expression analysis is presented of the three genes in two F. pratensis genotypes with contrasting leaf growth characteristics grown under two nitrogen levels. By means of a detailed spatial analysis of growth and XET encoding transcript pattern along the LEZ, a specific correlation is shown between FpXET1 expression and tissue elongation that is maintained under the different growth conditions, while the two other XETs expressed in the LEZ show different transcript dynamics. Tissue localization of FpXET1 and FpXET2 transcripts indicate an accumulation throughout young tissue, which is consistent with the encoded proteins playing roles in cell wall modification processes during growth. It is proposed that FpXET1 is a potential marker for tissue elongation and leaf growth in F. pratensis.
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Affiliation(s)
- B Reidy
- Institute of Plant Sciences, Swiss Federal Institute of Technology (ETH) Zürich, Universitätsstrasse 2, 8092 Zürich, Switzerland
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45
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Yuan S, Wu Y, Cosgrove DJ. A fungal endoglucanase with plant cell wall extension activity. PLANT PHYSIOLOGY 2001; 127:324-33. [PMID: 11553760 PMCID: PMC117988 DOI: 10.1104/pp.127.1.324] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2001] [Revised: 05/07/2001] [Accepted: 06/01/2001] [Indexed: 05/18/2023]
Abstract
We have identified a wall hydrolytic enzyme from Trichoderma reesei with potent ability to induce extension of heat-inactivated type I cell walls. It is a small (23-kD) endo-1,4-beta-glucanase (Cel12A) belonging to glycoside hydrolase family 12. Extension of heat-inactivated walls from cucumber (Cucumis sativus cv Burpee Pickler) hypocotyls was induced by Cel12A after a distinct lag time and was accompanied by a large increase in wall plasticity and elasticity. Cel12A also increased the rate of stress relaxation of isolated walls at very short times (<200 ms; equivalent to reducing t(0), a parameter that estimates the minimum relaxation time). Similar changes in wall plasticity and elasticity were observed in wheat (Triticum aestivum cv Pennmore Winter) coleoptile (type II) walls, which showed only a negligible extension in response to Cel12A treatment. Thus, Cel12A modifies both type I and II walls, but substantial extension is found only in type I walls. Cel12A has strong endo-glucanase activity against xyloglucan and (1-->3,1-->4)-beta-glucan, but did not exhibit endo-xylanase, endo-mannase, or endo-galactanase activities. In terms of kinetics of action and effects on wall rheology, wall loosening by Cel12A differs qualitatively from the action by expansins, which induce wall extension by a non-hydrolytic polymer creep mechanism. The action by Cel12A mimics some of the changes in wall rheology found after auxin-induced growth. The strategy used here to identify Cel12A could be used to identify analogous plant enzymes that cause auxin-induced changes in cell wall rheology.
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Affiliation(s)
- S Yuan
- Department of Biology, 208 Mueller Lab, Pennsylvania State University, University Park, Pennsylvania 16802, USA
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Li LC, Cosgrove DJ. Grass group I pollen allergens (beta-expansins) lack proteinase activity and do not cause wall loosening via proteolysis. EUROPEAN JOURNAL OF BIOCHEMISTRY 2001; 268:4217-26. [PMID: 11488915 DOI: 10.1046/j.1432-1327.2001.02336.x] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Group I grass pollen allergens make up a subgroup of the beta-expansin family of cell wall loosening proteins in plants. A recent study reported that recombinant Phl p 1, the group I allergen from timothy grass pollen, was associated with papain-like proteinase activity and suggested that expansins loosen the plant cell wall via proteolysis. We tested this idea with three experimental approaches. First, we evaluated three purified native group I allergens from timothy grass, ryegrass and maize (Phl p 1, Lol p 1, Zea m 1) using five proteinase assays with a variety of substrates. The proteins had substantial wall loosening activity, but no detectable proteolytic activity. Thus we cannot confirm proteolytic activity in the pollen allergen class of beta-expansins. Second, we tested the ability of proteinases to induce cell wall extension in vitro. Tests included cysteine proteinases, serine proteinases, aspartic proteinases, metallo proteinases, and aggressive proteinase mixtures, none of which induced wall extension in vitro. Thus, wall proteins are unlikely to be important load-bearing components of the plant cell wall. Third, we tested the sensitivity of beta-expansin activity and native wall extension activity to proteinase inhibitors. The results show that a wide range of proteinase inhibitors (phenylmethanesulfonyl fluoride, N-ethylmaleimide, iodoacetic acid, Pefabloc SC, and others) inhibited neither activity. From these three sets of results we conclude proteolysis is not a likely mechanism of plant cell wall loosening and that the pollen allergen class of beta-expansins do not loosen cell walls via a proteolytic mechanism.
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Affiliation(s)
- L C Li
- Department of Biology, 208 Mueller Laboratory, The Pennsylvania State University, University Park, PA 16802, USA
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Wu Y, Thorne ET, Sharp RE, Cosgrove DJ. Modification of expansin transcript levels in the maize primary root at low water potentials. PLANT PHYSIOLOGY 2001; 126:1471-9. [PMID: 11500546 PMCID: PMC117147 DOI: 10.1104/pp.126.4.1471] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/27/2000] [Revised: 03/26/2001] [Accepted: 04/25/2001] [Indexed: 05/18/2023]
Abstract
We previously demonstrated that maintenance of cell elongation in the apical region of maize primary roots at low water potentials (psi(w)) was associated with an increase in expansin activity and extractable expansin protein. Here, we characterized the spatial pattern of expansin gene expression along the growing maize root and studied the effect of low psi(w) on expansin gene expression. Roots were divided into three segments: apical 0 to 5 mm, subapical 5 to 10 mm, and non-growing 10 to 20 mm. Of the five expansin genes expressed in control roots, two alpha-expansins (Exp1 and Exp5) and two beta-expansins (ExpB2 and ExpB8) are expressed specifically in the growing region, whereas expression of beta-expansin ExpB6 is shifted basipetally. After seedlings were transplanted to vermiculite with a psi(w) of -1.6 MPa, transcripts for Exp1, Exp5, and ExpB8 rapidly accumulated in the apical region of the root. These mRNA changes correlated with the maintenance of root elongation and increases in wall extensibility found previously. The beta-expansins ExpB2 and ExpB6 showed distinctive patterns of expression and responses to low psi(w,) indicative of distinctive functions. Inhibition of abscisic acid (ABA) accumulation at low psi(w) (by fluridone treatment) had no effect on expansin expression, except that ExpB2 transcript level showed a minor dependence on ABA. Gene-specific regulation of alpha- and beta-expansin mRNA pools likely contributes to growth alterations of the maize (Zea mays) root as it adapts to a low psi(w), but these changes do not appear to be mediated by changes in ABA content.
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Affiliation(s)
- Y Wu
- Department of Biology, 208 Mueller Laboratory, Pennsylvania State University, University Park, Pennsylvania 16802, USA
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Downes BP, Steinbaker CR, Crowell DN. Expression and processing of a hormonally regulated beta-expansin from soybean. PLANT PHYSIOLOGY 2001; 126:244-52. [PMID: 11351087 PMCID: PMC102298 DOI: 10.1104/pp.126.1.244] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2000] [Revised: 11/03/2000] [Accepted: 01/19/2001] [Indexed: 05/20/2023]
Abstract
Expansin proteins are essential components of acid-induced cell wall loosening in plants. Beta-expansins, which constitute a subfamily of related expansin proteins, include the group I grass pollen allergens. To provide a better description of beta-expansin expression, we have characterized a cytokinin-inducible beta-expansin from soybean (Glycine max cv Mandarin) called Cim1. Our results demonstrate that the hormones cytokinin and auxin act synergistically to induce the accumulation and proteolytic processing of Cim1. Carboxyl terminal truncation of a 35-kD form of Cim1 is predicted to remove the putative cellulose binding domain from the amino terminal cysteine-rich domain, resulting in a 20-kD form of the protein. Furthermore, the identical amino termini of the 35- and 20-kD forms of Cim1 correspond to a position 11 amino acids downstream of the predicted signal sequence cleavage site, suggesting proteolysis of a short amino terminal propeptide after removal of the signal peptide. This propeptide fragment contains a consensus site for N-glycosylation and our data suggest that it is glycosylated by a tunicamycin-sensitive mechanism in cultured soybean cells. The onset of Cim1 expression correlates with increased growth of soybean cultures. Ultimately, Cim1 is rapidly and specifically proteolyzed as soybean cultures reach stationary phase. These findings are consistent with the hypothesis that beta-expansin proteins are extensively modified by post-translational N-glycosylation and proteolysis.
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Affiliation(s)
- B P Downes
- Department of Biology, Indiana University-Purdue University Indianapolis, 723 West Michigan Street, Indianapolis, Indiana 46202-5132, USA
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Neves-Piestun BG, Bernstein N. Salinity-induced inhibition of leaf elongation in maize is not mediated by changes in cell wall acidification capacity. PLANT PHYSIOLOGY 2001; 125:1419-28. [PMID: 11244121 PMCID: PMC65620 DOI: 10.1104/pp.125.3.1419] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2000] [Revised: 08/27/2000] [Accepted: 11/24/2000] [Indexed: 05/18/2023]
Abstract
The physiological mechanisms underlying leaf growth inhibition under salt stress are not fully understood. Apoplastic pH is considered to play an important role in cell wall loosening and tissue growth and was demonstrated to be altered by several growth-limiting environmental conditions. In this study we have evaluated the possibility that inhibition of maize (Zea mays) leaf elongation by salinity is mediated by changes in growing cell wall acidification capacity. The kinetics of extended apoplast pH changes by leaf tissue of known expansion rates and extent of growth reduction under stress was investigated (in vivo) and was found similar for non-stressed and salt-stressed tissues at all examined apoplast salinity levels (0.1, 5, 10, or 25 mM NaCl). A similar rate of spontaneous acidification for the salt and control treatments was demonstrated also in in situ experiments. Unlike growing cells that acidified the external medium, mature nongrowing cells caused medium alkalinization. The kinetics of pH changes by mature tissue was also unchanged by salt stress. Fusicoccin, an enhancer of plasmalemma H(+)-ATPase activity level, greatly stimulated elongation growth and acidification rate to a similar extent in the control and salt treatments. That the ability of the growing tissue to acidify the apoplast did not change under same salt stress conditions that induced inhibition of tissue elongation rate suggests that salinity does not inhibit cell growth by impairing the acidification process or reducing the inherent capacity for cell wall acidification.
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Affiliation(s)
- B G Neves-Piestun
- Institute of Soil, Water, and Environmental Sciences, The Volcani Center, P.O. Box 6, Bet-Dagan, 50-250, Israel
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Abstract
Plant cell walls are the starting materials for many commercial products, from lumber, paper and textiles to thickeners, films and explosives. The cell wall is secreted by each cell in the plant body, forming a thin fibreglass-like network with remarkable strength and flexibility. During growth, plant cells secrete a protein called expansin, which unlocks the network of wall polysaccharides, permitting turgor-driven cell enlargement. Germinating grass pollen also secretes an unusual expansin that loosens maternal cell walls to aid penetration of the stigma by the pollen tube. Expansin's action has puzzling implications for plant cell-wall structure. The recent explosion of gene sequences and expression data has given new hints of additional biological functions for expansins.
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Affiliation(s)
- D J Cosgrove
- Department of Biology, Pennsylvania State University, University Park 16802, USA.
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