Does lipid-correction introduce biases into isotopic mixing models? Implications for diet reconstruction studies

Lipid-correction models for δ13C values across small pelagic fishes (Clupeiformes) from the Atlantic Ocean

The interpretation of δ13C values in trophic ecology requires standardization of the lipid content of organisms estimated through their C:N ratio. To avoid time-consuming lipid extractions, the use of mathematical corrections has been developed for many years, and the conclusions generally point in the direction of species-specific adjustment of the models. This study aimed at defining the maximum taxonomic level required to obtain the best corrected δ13C values in small pelagic fish of the order Clupeiformes. δ13C values of six species were analyzed bulk and lipid-free, and were used to fit and validate linear and mass-balance models at different taxonomic levels. Despite a species effect combined with the C:N ratio effect, the corrected δ13C values produced by a global model for the Clupeiformes were as good as or better when compared to lipid-free samples than those produced by species-specific models, paving the way for possible generalization to other species in this order. At the order level, the linear model outperformed the mass-balance model.

Non-lethal sampling does not misrepresent trophic level or dietary sources for Sagmariasus verreauxi (eastern rock lobster)

RATIONALE

Isotope analysis can be used to investigate the diets of predators based on assimilation of nitrogen and carbon isotopes from prey. Recent work has shown that tissues taken from legs, antennae or abdomen of lobsters can give different indications of diet, but this has never been evaluated for Sagmariasus verreauxi (eastern rock lobster). Work is now needed to prevent erroneous conclusions being drawn about lobster food webs, and undertaking this work could lead to developing non-lethal sampling methodologies. Non-lethal sampling for lobsters is valuable both ethically and for areas of conservation significance such as marine reserves.

METHOD

We evaluated this by dissecting 76 lobsters and comparing δ¹³ C and δ¹⁵ N isotope values in antennae, leg and abdomen tissue from the same individuals ranging from 104 to 137 mm carapace length. Stable isotope values were determined using a Europa EA GSL elemental analyser coupled with Hydra 20-20 Isoprime IRMS.

RESULTS

We found the abdomen δ¹³ C values to be lower than other tissues by 0.3 ± 0.2‰ for antennae tissue and 0.1 ± 0.2‰ δ¹³ C for leg tissues, whereas for δ¹⁵ N, no significant difference between tissues was observed. There was no significant effect of lobster size or sex, though we did observe interactions between month and tissue type, indicating that differences may be seasonal. Importantly, the detected range of isotopic variability between tissues is within the range of uncertainty used for discrimination factors in isotopic Bayesian modelling of 0‰-1.0‰ for δ¹³ C and 3.0‰-4.0‰ for δ¹⁵ N.

CONCLUSIONS

We show that S. verreauxi can be sampled non-lethally with mathematical corrections applied for δ¹³ C, whereas any tissue is suitable for δ¹⁵ N. Our results indicate that a walking leg is most favourable and would also be the least intrusive for the lobster. The application of non-lethal sampling provides avenues for the contribution of citizen science to understanding lobster food webs and to undertake fieldwork in ecologically sensitive areas such as marine reserves.

Seasonality can affect ecological interactions between fishes of different thermal guilds

Seasonality could play a crucial role in structuring species interactions. For example, many ectotherms alter their activity, habitat, and diet in response to seasonal temperature variation. Species also vary widely in physiological traits, like thermal preference, which may mediate their response to seasonal variation. How behavioral responses to seasonality differ between competing species and alter their overlap along multiple niche axes in space and time, remains understudied. Here, we used bulk carbon and nitrogen stable isotopes combined with stomach content analysis to determine the seasonal diet overlap between a native cold-water species [lake trout (Salvelinus namaycush)] and a range-expanding warm-water species [smallmouth bass (Micropterus dolomieu)] in two north-temperate lakes over 2 years. We coupled these analyses with fine-scale acoustic telemetry from one of the lakes to determine seasonal overlap in habitat use and activity levels. We found that dietary niche overlap was higher in the spring, when both species were active and using more littoral resources, compared to the summer, when the cold-water lake trout increased their reliance on pelagic resources. Telemetry data revealed that activity rates diverged in the winter, when lake trout remained active, but the warm-water smallmouth bass reduced their activity. Combining stable isotopes and stomach contents with acoustic telemetry was a powerful approach for demonstrating that species interactions are temporally and spatially dynamic. In our case, the study species diverged in their diet, habitat, and activity more strongly during certain times of the year than others, in ways that were consistent with their thermal preferences. Despite large differences in thermal preference, however, there were times of year when both species were active and sharing a common habitat and prey source (i.e., resource overlap was greater in spring than summer). Based on our findings, important ecological processes are occurring during all seasons, which would be missed by summer sampling alone. Our study stresses that quantifying multiple niche axes in both space and time is important for understanding the possible outcomes of altered seasonal conditions, including shorter winters, already arising under a changing climate.

Expanding the invasion toolbox: including stable isotope analysis in risk assessment

Species introductions are a major concern for ecosystem functioning, socio-economic wealth, and human well-being. Preventing introductions proved to be the most effective management strategy, and various tools such as species distribution models and risk assessment protocols have been developed or applied to this purpose. These approaches use information on a species to predict its potential invasiveness and impact in the case of its introduction into a new area. At the same time, much biodiversity has been lost due to multiple drivers. Ways to determine the potential for successful reintroductions of once native but now extinct species as well as assisted migrations are yet missing. Stable isotope analyses are commonly used to reconstruct a species’ feeding ecology and trophic interactions within communities. Recently, this method has been used to predict potentially arising trophic interactions in the absence of the target species. Here we propose the implementation of stable isotope analysis as an approach for assessment schemes to increase the accuracy in predicting invader impacts as well as the success of reintroductions and assisted migrations. We review and discuss possibilities and limitations of this methods usage, suggesting promising and useful applications for scientists and managers.

Isotopic Niche Analysis of Long-Finned Pilot Whales (Globicephala melas edwardii) in Aotearoa New Zealand Waters

Simple Summary

Isotopic niche analyses can elucidate a species’ foraging ecology. Using isotopic values of δ¹³C, δ¹⁵N and δ³⁴S, the isotopic niche of long-finned pilot whales (Globicephala melas edwardii) in Aotearoa New Zealand was investigated for animals that stranded in six different events across two locations between 2009 and 2017. Generalised additive models revealed that stranding event was a stronger predictor for δ¹³C and δ¹⁵N values than body length, sex, or reproductive status, indicating that spatiotemporal differences explained isotopic variation of G. m. edwardii in New Zealand waters better than ontogenetic factors.

Abstract

The quantification of a species’ trophic niche is important to understand the species ecology and its interactions with the ecosystem it resides in. Despite the high frequency of long-finned pilot whale (Globicephala melas edwardii) strandings on the Aotearoa New Zealand coast, their trophic niche remains poorly understood. To assess the isotopic niche of G. m. edwardii within New Zealand, ontogenetic (sex, total body length, age, maturity status, reproductive group) and spatiotemporal (stranding location, stranding event, and stranding year) variation were investigated. Stable isotopes of carbon (δ¹³C) and nitrogen (δ¹⁵N) were examined from skin samples of 125 G. m. edwardii (67 females and 58 males) collected at mass-stranding events at Onetahua Farewell Spit in 2009 (n = 20), 2011 (n = 20), 2014 (n = 27) and 2017 (n = 20) and at Rakiura Stewart Island in 2010 (n = 19) and 2011 (n = 19). Variations in δ³⁴S values were examined for a subset of 36 individuals. General additive models revealed that stranding event was the strongest predictor for δ¹³C and δ¹⁵N values, whilst sex was the strongest predictor of δ³⁴S isotopic values. Although similar within years, δ¹³C values were lower in 2014 and 2017 compared to all other years. Furthermore, δ¹⁵N values were higher within Farewell Spit 2017 compared to any other stranding event. This suggests that the individuals stranded in Farewell Spit in 2017 may have been feeding at a higher trophic level, or that the nitrogen baseline may have been higher in 2017 than in other years. Spatiotemporal differences explained isotopic variation of G. m. edwardii in New Zealand waters better than ontogenetic factors.

Summer/fall diet and macronutrient assimilation in an Arctic predator

Free-ranging predator diet estimation is commonly achieved by applying molecular-based tracers because direct observation is not logistically feasible or robust. However, tracers typically do not represent all dietary macronutrients, which likely obscures resource use as prey proximate composition varies and tissue consumption can be specific. For example, polar bears (Ursus maritimus) preferentially consume blubber, yet diets have been estimated using fatty acids based on prey blubber or stable isotopes of lipid-extracted prey muscle, neither of which represent both protein and lipid macronutrient contributions. Further, additional bias can be introduced because dietary fat is known to be flexibly routed beyond short-term energy production and storage. We address this problem by simultaneously accounting for protein and lipid assimilation using carbon and nitrogen isotope compositions of lipid-containing prey muscle and blubber to infer summer/fall diet composition and macronutrient proportions from Chukchi Sea polar bear guard hair (n = 229) sampled each spring between 2008 and 2017. Inclusion of blubber (85-95% lipid by dry mass) expanded the isotope mixing space and improved separation among prey species. Ice-associated seals, including nutritionally dependent pups, were the primary prey in summer/fall diets with lower contributions by Pacific walruses (Odobenus rosmarus) and whales. Percent blubber estimates confirmed preferential selection of this tissue and represented the highest documented lipid assimilation for any animal species. Our results offer an improved understanding of summer/fall prey macronutrient usage by Chukchi Sea polar bears which likely coincides with a nutritional bottleneck as the sea ice minimum is approached.

Artificial selection for predatory behaviour results in dietary niche differentiation in an omnivorous mammal

The diet of an individual is a result of the availability of dietary items and the individual's foraging skills and preferences. Behavioural differences may thus influence diet variation, but the evolvability of diet choice through behavioural evolution has not been studied. We used experimental evolution combined with a field enclosure experiment to test whether behavioural selection leads to dietary divergence. We analysed the individual dietary niche via stable isotope ratios of nitrogen (δ¹⁵N) and carbon (δ¹³C) in the hair of an omnivorous mammal, the bank vole, from four lines selected for predatory behaviour and four unselected control lines. Predatory voles had higher hair δ¹⁵N values than control voles, supporting our hypothesis that predatory voles would consume a higher trophic level diet (more animal versus plant foods). This difference was significant in the early but not the late summer season. The δ¹³C values also indicated a seasonal change in the consumed plant matter and a difference in food sources among selection lines in the early summer. These results imply that environmental factors interact with evolved behavioural tendencies to determine dietary niche heterogeneity. Behavioural selection thus has potential to contribute to the evolution of diet choice and ultimately the species' ecological niche breadth.

Marine subsidy promotes spatial and dietary niche variation in an omnivore, the Keen's mouse (Peromyscus keeni)

Marine-derived resource subsidies can generate intrapopulation variation in the behaviors and diets of terrestrial consumers. How omnivores respond, given their multiple trophic interactions, is not well understood. We sampled mice (Peromyscus keeni) and their food sources at five sites on three islands of the Central Coast of British Columbia, Canada, to test predictions regarding variation in the spatial behavior and consumption of marine-subsidized foods among individuals. About 50% of detections (n = 27 recaptures) occurred at traps closest to shoreline (25 m), with capture frequencies declining significantly inland (up to 200 m). Stable isotope signatures (δ 13C and δ 15N), particularly δ 15N, in plant foods, forest arthropod prey, and mouse feces were significantly enriched near shorelines compared with inland, while δ 13C patterns were more variable. Bayesian isotope mixing models applied to isotope values in mouse hair indicated that over one-third (35-37%) of diet was comprised of beach-dwelling arthropods, a marine-derived food source. Males were more abundant near the shoreline than females and consumed more marine-derived prey, regardless of reproductive status or availability of other food sources. Our results identify how multiple pathways of marine nutrient transfer can subsidize terrestrial omnivores and how subsets of recipient populations can show variation in spatial and dietary response.

Trophic relationships between the crab Libinia ferreirae and its symbionts

Symbioses are ubiquitous in the animal kingdom. However, in most cases, the role of each member is relatively fixed, and it is rare for the same species to exhibit different symbiotic behaviours throughout its ontogeny. Here, we use stable isotope analyses of food resources to identify the relationships between the spider crab Libinia ferreirae as a symbiont of its jellyfish host during juvenile life stages and as a host for sea anemone epibionts on its carapace as an adult. We ask the following questions: How do the food sources used by the crab change between its juvenile and adult phase? How does the symbiotic relationship change when the crab develops from a juvenile into an adult? We were particularly interested in the extent to which L. ferreirae juveniles feed on jellyfish hosts versus planktonic prey during the juvenile symbiont phase and how adults feed on their epibionts during the free-living phase. δ¹³C of L. ferreirae differed between juvenile (associated with the jellyfish) and adult stages (free-living), unsurprisingly suggesting that there is little isotopic niche overlap between these life phases. SIMMr models using δ¹³C and δ¹⁵N of the crab and its potential food sources indicated that the juvenile crab symbionts did not derive any significant nutrition from medusae and relied predominantly on zooplankton prey. Since juvenile crabs do not have structures to capture zooplankton for feeding, we suggest that they may be kleptoparasites, stealing zooplankton food from their host, though further work is needed to identify the form that such a symbiosis might take. The nutrition of free-living crabs was predominantly derived from benthic algae and shrimps rather than from epibionts. These epibionts appear to use similar food resources as the host, suggesting a symbiotic relationship more akin to mutualism. Thus, the crabs move from a symbiosis in which they may act as parasites to one where they act as hosts. Such flexible approaches to symbioses may be more common than currently described, particularly in species with different functional roles during individual life stages.

Aged soils contribute little to contemporary carbon cycling downstream of thawing permafrost peatlands

Vast stores of millennial-aged soil carbon (MSC) in permafrost peatlands risk leaching into the contemporary carbon cycle after thaw caused by climate warming or increased wildfire activity. Here we tracked the export and downstream fate of MSC from two peatland-dominated catchments in subarctic Canada, one of which was recently affected by wildfire. We tested whether thermokarst bog expansion and deepening of seasonally thawed soils due to wildfire increased the contributions of MSC to downstream waters. Despite being available for lateral transport, MSC accounted for ≤6% of dissolved organic carbon (DOC) pools at catchment outlets. Assimilation of MSC into the aquatic food web could not explain its absence at the outlets. Using δ¹³ C-Δ¹⁴ C-δ¹⁵ N-δ² H measurements, we estimated only 7% of consumer biomass came from MSC by direct assimilation and algal recycling of heterotrophic respiration. Recent wildfire that caused seasonally thawed soils to reach twice as deep in one catchment did not change these results. In contrast to many other Arctic ecosystems undergoing climate warming, we suggest waterlogged peatlands will protect against downstream delivery and transformation of MSC after climate- and wildfire-induced permafrost thaw.

Comparisons of stable isotope composition among tissues of green turtles

Ecologists often need to make choices about what body parts (tissues or organs) of an animal to sample. The decision is typically guided by the need to treat animals as humanely as possible, as well as the information that different body parts can provide. When using stable isotopes, decisions are also influenced by whether specimens would require preservation, and whether they have properties (such as high lipid concentrations) that would influence measurements. Sometimes we cannot use a preferred tissue (for example, because of ethical or logistical constraints), and in such cases an ability to reliably predict stable isotope composition for one tissue from data yielded by another would be useful.

METHODS

In this study we analysed multiple tissues (skin, whole blood, red blood cells, plasma and nail) from green turtles (Chelonia mydas) to evaluate variation in C:N ratios, and test hypotheses about the intercept and slope of regressions of stable carbon and nitrogen isotope compositions among tissues.

RESULTS

Regression models revealed that linear relationships were present for most comparisons, except those involving the δ¹³ C of skin, and the slopes (β₁ ) of most regressions were different from unity. The C:N ratios of skin were significantly higher and more variable than those of other tissues. The δ¹³ C and δ¹⁵ N of nail were highly correlated with those of the whole blood, red blood cells and plasma. Nail and red blood cells showed low variation in C:N.

CONCLUSIONS

The patterns in slopes of regressions indicate that comparisons of measurements yielded by different tissues of wild animals are complicated by the fact that the tissues are unlikely to be in isotopic equilibrium with their diet. Of the tissues used in this study, nail is simple to collect, requires minimal disturbance to the animal and no special preservation; these traits should make it attractive to turtle ecologists, but more information is needed on aspects such as growth rates.

Stable Isotope Enrichment (Δ15N) in the Predatory Flower Bug (Orius majusculus) Predicts Fitness-Related Differences between Diets

Mass rearing of insects, used both as biological control agents and for food and feed, is receiving increasing attention. Efforts are being made to improve diets that are currently in use, and to identify alternative diets, as is the case with the predatory flower bug (Orius majusculus) and other heteropteran predators, due to the high costs of their current diet, the eggs of the Mediterranean flour moth (E. kuehniella). The assessment of alternative diets may include measurements of the predator’s fitness-related traits (development time, weight, etc.), and biochemical analyses such as lipid and protein content in the diet and the insects. However, assessing diet quality via the predator’s fitness-related traits is laborious, and biochemical composition is often difficult to relate to the measured traits. Isotope analysis, previously used for diet reconstruction studies, can also serve as a tool for the assessment of diet quality. Here, the variation in discrimination factors or isotope enrichment (Δ¹⁵N and Δ¹³C) indicates the difference in isotopic ratio between the insect and its diet. In this study, we investigated the link between Δ¹⁵N and diet quality in the predatory bug Orius majusculus. Three groups of bugs were fed different diets: Ephestia kuehniella eggs, protein-rich Drosophila melanogaster and lipid-rich D. melanogaster. The isotopic enrichment and fitness-related measurements were assessed for each group. Results show a relation between Δ¹⁵N and fitness-related measurements, which conform to the idea that lower Δ¹⁵N indicates a higher diet quality.