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Mutizabal-Aros J, Ramírez ME, Haye PA, Meynard A, Pinilla-Rojas B, Núñez A, Latorre-Padilla N, Search FV, Tapia FJ, Saldías GS, Navarrete SA, Contreras-Porcia L. Morphological and Molecular Identification of Ulva spp. (Ulvophyceae; Chlorophyta) from Algarrobo Bay, Chile: Understanding the Composition of Green Tides. PLANTS (BASEL, SWITZERLAND) 2024; 13:1258. [PMID: 38732473 PMCID: PMC11085182 DOI: 10.3390/plants13091258] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2024] [Revised: 04/26/2024] [Accepted: 04/27/2024] [Indexed: 05/13/2024]
Abstract
Green algae blooms of the genus Ulva are occurring globally and are primarily attributed to anthropogenic factors. At Los Tubos beach in Algarrobo Bay along the central Chilean coast, there have been blooms of these algae that persist almost year-round over the past 20 years, leading to environmental, economic, and social issues that affect the local government and communities. The objective of this study was to characterize the species that form these green tides based on a combination of ecological, morpho-anatomical, and molecular information. For this purpose, seasonal surveys of beached algal fronds were conducted between 2021 and 2022. Subsequently, the sampled algae were analyzed morphologically and phylogenetically using the molecular markers ITS1 and tufA, allowing for the identification of at least five taxa. Of these five taxa, three (U. stenophylloides, U. uncialis, U. australis) have laminar, foliose, and distromatic morphology, while the other two (U. compressa, U. aragoensis) have tubular, filamentous, and monostromatic fronds. Intertidal surveys showed that U. stenophylloides showed the highest relative coverage throughout the seasons and all intertidal levels, followed by U. uncialis. Therefore, we can establish that the green tides on the coast of Algarrobo in Chile are multispecific, with differences in relative abundance during different seasons and across the intertidal zone, opening opportunities for diverse future studies, ranging from ecology to algal biotechnology.
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Affiliation(s)
- Javiera Mutizabal-Aros
- Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370251, Chile; (J.M.-A.); (M.E.R.); (A.M.); (B.P.-R.); (A.N.)
- Centro de Investigación Marina Quintay (CIMARQ), Facultad de Ciencias de la Vida, Universidad Andres Bello, Quintay 2531015, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile; (P.A.H.); (N.L.-P.); (F.V.S.); (G.S.S.); (S.A.N.)
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
| | - María Eliana Ramírez
- Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370251, Chile; (J.M.-A.); (M.E.R.); (A.M.); (B.P.-R.); (A.N.)
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile; (P.A.H.); (N.L.-P.); (F.V.S.); (G.S.S.); (S.A.N.)
| | - Pilar A. Haye
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile; (P.A.H.); (N.L.-P.); (F.V.S.); (G.S.S.); (S.A.N.)
- Departamento de Biología Marina, Facultad de Ciencias del Mar, Universidad Católica del Norte, Coquimbo 1780000, Chile
| | - Andrés Meynard
- Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370251, Chile; (J.M.-A.); (M.E.R.); (A.M.); (B.P.-R.); (A.N.)
- Centro de Investigación Marina Quintay (CIMARQ), Facultad de Ciencias de la Vida, Universidad Andres Bello, Quintay 2531015, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile; (P.A.H.); (N.L.-P.); (F.V.S.); (G.S.S.); (S.A.N.)
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
| | - Benjamín Pinilla-Rojas
- Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370251, Chile; (J.M.-A.); (M.E.R.); (A.M.); (B.P.-R.); (A.N.)
- Centro de Investigación Marina Quintay (CIMARQ), Facultad de Ciencias de la Vida, Universidad Andres Bello, Quintay 2531015, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile; (P.A.H.); (N.L.-P.); (F.V.S.); (G.S.S.); (S.A.N.)
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
| | - Alejandra Núñez
- Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370251, Chile; (J.M.-A.); (M.E.R.); (A.M.); (B.P.-R.); (A.N.)
- Centro de Investigación Marina Quintay (CIMARQ), Facultad de Ciencias de la Vida, Universidad Andres Bello, Quintay 2531015, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile; (P.A.H.); (N.L.-P.); (F.V.S.); (G.S.S.); (S.A.N.)
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
| | - Nicolás Latorre-Padilla
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile; (P.A.H.); (N.L.-P.); (F.V.S.); (G.S.S.); (S.A.N.)
| | - Francesca V. Search
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile; (P.A.H.); (N.L.-P.); (F.V.S.); (G.S.S.); (S.A.N.)
- Estación Costera de Investigaciones Marinas, Las Cruces, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile
- Millenium Nucleus for Ecology and Conservation of Temperate Mesophotic Reef Ecosystems (NUTME), Las Cruces, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile
| | - Fabian J. Tapia
- Departamento de Oceanografía, Facultad de Ciencias Naturales y Oceanográficas, Universidad de Concepción, Concepción 4070386, Chile;
- Centro de Investigación Oceanográfica COPAS Coastal, Universidad de Concepción, Concepción 4070386, Chile
| | - Gonzalo S. Saldías
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile; (P.A.H.); (N.L.-P.); (F.V.S.); (G.S.S.); (S.A.N.)
- Centro de Investigación Oceanográfica COPAS Coastal, Universidad de Concepción, Concepción 4070386, Chile
- Departamento de Física, Facultad de Ciencias, Universidad del Bío-Bío, Concepción 4051381, Chile
| | - Sergio A. Navarrete
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile; (P.A.H.); (N.L.-P.); (F.V.S.); (G.S.S.); (S.A.N.)
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
- Estación Costera de Investigaciones Marinas, Las Cruces, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile
- Millenium Nucleus for Ecology and Conservation of Temperate Mesophotic Reef Ecosystems (NUTME), Las Cruces, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile
- Centro de Investigación Oceanográfica COPAS Coastal, Universidad de Concepción, Concepción 4070386, Chile
| | - Loretto Contreras-Porcia
- Departamento de Ecología y Biodiversidad, Facultad de Ciencias de la Vida, Universidad Andres Bello, Santiago 8370251, Chile; (J.M.-A.); (M.E.R.); (A.M.); (B.P.-R.); (A.N.)
- Centro de Investigación Marina Quintay (CIMARQ), Facultad de Ciencias de la Vida, Universidad Andres Bello, Quintay 2531015, Chile
- Instituto Milenio en Socio-Ecología Costera (SECOS), Santiago 8370251, Chile; (P.A.H.); (N.L.-P.); (F.V.S.); (G.S.S.); (S.A.N.)
- Center of Applied Ecology and Sustainability (CAPES), Santiago 8331150, Chile
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Nowicka B. Heavy metal-induced stress in eukaryotic algae-mechanisms of heavy metal toxicity and tolerance with particular emphasis on oxidative stress in exposed cells and the role of antioxidant response. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:16860-16911. [PMID: 35006558 PMCID: PMC8873139 DOI: 10.1007/s11356-021-18419-w] [Citation(s) in RCA: 42] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Accepted: 12/27/2021] [Indexed: 04/15/2023]
Abstract
Heavy metals is a collective term describing metals and metalloids with a density higher than 5 g/cm3. Some of them are essential micronutrients; others do not play a positive role in living organisms. Increased anthropogenic emissions of heavy metal ions pose a serious threat to water and land ecosystems. The mechanism of heavy metal toxicity predominantly depends on (1) their high affinity to thiol groups, (2) spatial similarity to biochemical functional groups, (3) competition with essential metal cations, (4) and induction of oxidative stress. The antioxidant response is therefore crucial for providing tolerance to heavy metal-induced stress. This review aims to summarize the knowledge of heavy metal toxicity, oxidative stress and antioxidant response in eukaryotic algae. Types of ROS, their formation sites in photosynthetic cells, and the damage they cause to the cellular components are described at the beginning. Furthermore, heavy metals are characterized in more detail, including their chemical properties, roles they play in living cells, sources of contamination, biochemical mechanisms of toxicity, and stress symptoms. The following subchapters contain the description of low-molecular-weight antioxidants and ROS-detoxifying enzymes, their properties, cellular localization, and the occurrence in algae belonging to different clades, as well as the summary of the results of the experiments concerning antioxidant response in heavy metal-treated eukaryotic algae. Other mechanisms providing tolerance to metal ions are briefly outlined at the end.
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Affiliation(s)
- Beatrycze Nowicka
- Department of Plant Physiology and Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, 30-387, Kraków, Poland.
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Guo H, Li T, Zhao Y, Yu X. Role of copper in the enhancement of astaxanthin and lipid coaccumulation in Haematococcus pluvialis exposed to abiotic stress conditions. BIORESOURCE TECHNOLOGY 2021; 335:125265. [PMID: 34004560 DOI: 10.1016/j.biortech.2021.125265] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2021] [Revised: 05/05/2021] [Accepted: 05/06/2021] [Indexed: 06/12/2023]
Abstract
This study investigated the effects of copper (Cu) on astaxanthin and lipid biological synthesis in unicellular alga Haematococcus pluvialis under high-light (HL) and nitrogen-deficiency (ND) conditions. During a 15-day cultivation period, the astaxanthin and lipid contents reached the peak values (3.32% and 47.72%) under 6 μM Cu treatment, which were increased by 66.87% and 34.99% compared to nontreated group, respectively. The application of Cu also increased the transcriptional expression of biosynthesis genes and antioxidant enzyme-related genes, as well as increased the intracellular calcium (Ca2+) level but led to a decrease in reactive oxygen species (ROS) levels. Additionally, Cu treatment induced the activation of calcium-dependent protein kinases (CDPKs) and mitogen-activated protein kinases (MAPKs). This approach simultaneously facilitated astaxanthin and lipid production, and the role of Cu were elucidated on the regulation of signal transduction (e.g., Ca2+, CDPK, MAPK and ROS) in the carotenogenesis and lipogenesis in H. pluvialis.
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Affiliation(s)
- Hang Guo
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, China
| | - Tao Li
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, China
| | - Yongteng Zhao
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, China
| | - Xuya Yu
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming 650500, China.
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Xing Q, Bi G, Cao M, Belcour A, Aite M, Mo Z, Mao Y. Comparative Transcriptome Analysis Provides Insights into Response of Ulva compressa to Fluctuating Salinity Conditions. JOURNAL OF PHYCOLOGY 2021; 57:1295-1308. [PMID: 33715182 DOI: 10.1111/jpy.13167] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 02/18/2021] [Accepted: 03/01/2021] [Indexed: 06/12/2023]
Abstract
Ulva compressa, a green tide-forming species, can adapt to hypo-salinity conditions, such as estuaries and brackish lakes. To understand the underlying molecular mechanisms of hypo-salinity stress tolerance, transcriptome-wide gene expression profiles in U. compressa were created using digital gene expression profiles. The RNA-seq data were analyzed based on the comparison of differently expressed genes involved in specific pathways under hypo-salinity and recovery conditions. The up-regulation of genes in photosynthesis and glycolysis pathways may contribute to the recovery of photosynthesis and energy metabolism, which could provide sufficient energy for the tolerance under long-term hyposaline stress. Multiple strategies, such as ion transportation and osmolytes metabolism, were performed to maintain the osmotic homeostasis. Additionally, several long noncoding RNA were differently expressed during the stress, which could play important roles in the osmotolerance. Our work will serve as an essential foundation for the understanding of the tolerance mechanism of U. compressa under the fluctuating salinity conditions.
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Affiliation(s)
- Qikun Xing
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China
- Integrative Biology of Marine Models (LBI2M, UMR8227), Station Biologique deRoscoff (SBR), CNRS, Sorbonne Université, 29680, Roscoff, France
| | - Guiqi Bi
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China
- Agricultural Synthetic Biology Center, Chinese Academy of Agricultural Sciences, Agricultural Genomes Institute at Shenzhen, Shenzhen, 518120, China
| | - Min Cao
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China
- School of Marine Science and Engineering, Qingdao Agricultural University, Qingdao, 266109, China
| | - Arnaud Belcour
- Inria, CNRS, IRISA, Equipe Dyliss, Univ Rennes, Rennes, France
| | - Méziane Aite
- Inria, CNRS, IRISA, Equipe Dyliss, Univ Rennes, Rennes, France
| | - Zhaolan Mo
- MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China
| | - Yunxiang Mao
- MOE Key Laboratory of Utilization and Conservation for Tropical Marine Bioresources, College of Fisheries and Life Science, Hainan Tropical Ocean University, Sanya, 572022, China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237, China
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Marambio-Alfaro Y, Saavedra JV, Enciso LÑ, Marras AL, Serrano AE, Peláez RM, Bruna AC, Ávalos GÁ, Maldonado MV. Microlophus atacamensis as a biomonitor of coastal contamination in the Atacama Desert, Chile: An evaluation through a non-lethal technique. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 269:115739. [PMID: 33279265 DOI: 10.1016/j.envpol.2020.115739] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2020] [Revised: 09/12/2020] [Accepted: 09/25/2020] [Indexed: 06/12/2023]
Abstract
In this report, we investigated the accumulation of heavy metals in the lizard Microlophus atacamensis, in three coastal areas of the Atacama Desert, northern Chile. We captured reptiles in a non-intervened area (Parque Nacional Pan de Azúcar, PAZ), an area of mining impact (Caleta Palitos, PAL) and an active industrial zone (Puerto de Caldera, CAL). Our methods included a non-lethal sampling of reptiles' tails obtained by autotomy and a few sacrificed animals to perform a stomach contents analysis. The concentrations of lead, copper, nickel, zinc and cadmium were measured by atomic absorption spectrophotometry in both soil and prey and compared to those recorded in the lizards' tails. Data obtained from lizard tails captured in PAL showed significantly high concentrations of Pb, Cu, Ni, and Zn compared to the other two sites PAZ and CAL. We did not find statistically significant differences among PAZ, PAL and CAL soils, probably due to the similar geological composition of the sites. However, the regional background values for Pb indicate contamination or at least metal enrichment in soils of the three sites, for Cu the global background values indicate contamination for the three sites, and for Cd both the regional and global backgroud values show high values. The analysis of the stomach content showed differences in the food sources of the lizards among the sites studied. The concentration of heavy metal in lizard tissues versus prey delivered values of the Trophic Transfer Factor higher than one (1), suggesting that food may be a primary source of metals in the tissues of M. atacamensis. Calculations of the Bioaccumulation Factor (BAF) and the Ecological Risk (IR) resulted in values higher than one (1) indicating the relevance of this process in the sites studied. In this article, we report relationships between environmental contaminants, mainly putative preys, and concentrations found in lizard tails, which is more substantial in areas with historical heavy metal contamination such as PAL where the non-lethal technique developed in this research suggests a process of metal bioaccumulation in M. atacamensis.
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Affiliation(s)
- Yery Marambio-Alfaro
- LASPAL-LABIGAM Laboratories, Alexander von Humboldt Institute of Natural Sciences. University of Antofagasta, Antofagasta, 1240000, Chile; Parménides Limited, 1265 Plaza Wheelwright. Copiapó, 1530291, Atacama, Chile; Doctoral Program in Applied Sciences - Coastal Marine Systems, Faculty of Marine Sciences and Biological Resources. University of Antofagasta, Antofagasta, 1240000, Chile.
| | - Jorge Valdés Saavedra
- LASPAL-LABIGAM Laboratories, Alexander von Humboldt Institute of Natural Sciences. University of Antofagasta, Antofagasta, 1240000, Chile
| | - Luis Ñacari Enciso
- Doctoral Program in Applied Sciences - Coastal Marine Systems, Faculty of Marine Sciences and Biological Resources. University of Antofagasta, Antofagasta, 1240000, Chile
| | - Américo López Marras
- LASPAL-LABIGAM Laboratories, Alexander von Humboldt Institute of Natural Sciences. University of Antofagasta, Antofagasta, 1240000, Chile
| | | | - Rodrigo Martínez Peláez
- Department of Mathematics, Faculty of Basic Sciences, University of Antofagasta, Antofagasta, 1240000, Chile
| | - Alexis Castillo Bruna
- Research Centre for Advanced Studies of Maule, Vice-Rector's Office for Research and Postgraduate Studies, Catholic University of Maule, San Miguel Campus, San Miguel Av., Talca, Chile
| | - Gabriel Álvarez Ávalos
- Department of Engineering in Geo Measuring and Geomatics. University of Antofagasta, Antofagasta, 1240000, Chile
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Nualla-Ong A, Phongdara A, Buapet P. Copper and zinc differentially affect root glutathione accumulation and phytochelatin synthase gene expression of Rhizophora mucronata seedlings: Implications for mechanisms underlying trace metal tolerance. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 205:111175. [PMID: 32836161 DOI: 10.1016/j.ecoenv.2020.111175] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 08/06/2020] [Accepted: 08/11/2020] [Indexed: 06/11/2023]
Abstract
Mangroves are susceptible to contamination due to their proximity to shores and human activities. Exposure to excessive trace metals can disturb their physiological functions and may eventually lead to death. Rhizophora mucronata is a common species growing in the mangrove forests of Thailand. Previous studies have shown that seedlings of R. mucronata are tolerant of trace metal and that they accumulate a large metal content in their root tissue. However, knowledge of their tolerance mechanisms is still lacking. To elicit the role of metal detoxification and sequestration by phytochelatins (PC) in the roots of R. mucronata seedlings, the impacts of Cu and Zn exposure were assessed on 1) physiological characteristics 2) the concentration of glutathione (GSH), a precursor of PC and 3) the level of the transcripts encoding phytochelatin synthase (PCS), the key enzyme for PC biosynthesis. Seedlings of R. mucronata were exposed to Cu and Zn in a hydroponic experiment (200 mg Cu or Zn/L in 1/4× Hoagland solution containing 8‰ NaCl, single addition). We found that both trace metals were largely accumulated in the roots. Only Cu-treated seedlings showed a decrease in the photosynthetic efficiency, in line with observed toxicity symptoms (i.e. bent stems and slight wilting of leaves). Metal accumulation, however, did not induce oxidative stress in the roots as indicated by similar level of total reactive species and lipid peroxidation across treatments. The GSH content in the roots exposed to Cu was significantly reduced while no change was observed in Zn-exposed roots. Coordinated semi-quantitative PCR and RT-qPCR revealed pcs down-regulation in Cu-treated roots, whereas Zn-treated roots showed a down-regulation on day 1 and a subsequent recovery on day 5. Failure of detoxification and sequestration of excess Cu due to GSH limitation and down-regulation of pcs may lead to the phytotoxic effects observed in Cu-treated plants. Our results suggest that both GSH and PC play an important role in trace metal tolerance in R. mucronata seedlings.
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Affiliation(s)
- Aekkaraj Nualla-Ong
- Faculty of Medical Technology, Prince of Songkla University, Thailand; Center for Genomics and Bioinformatics Research, Faculty of Science, Prince of Songkla University, Thailand
| | - Amornrat Phongdara
- Faculty of Medical Technology, Prince of Songkla University, Thailand; Center for Genomics and Bioinformatics Research, Faculty of Science, Prince of Songkla University, Thailand
| | - Pimchanok Buapet
- Plant Physiology Laboratory, Division of Biological Science, Faculty of Science, Prince of Songkla University, Thailand; Coastal Oceanography and Climate Change Research Center, Prince of Songkla University, Thailand.
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Laporte D, Rodríguez F, González A, Zúñiga A, Castro-Nallar E, Sáez CA, Moenne A. Copper-induced concomitant increases in photosynthesis, respiration, and C, N and S assimilation revealed by transcriptomic analyses in Ulva compressa (Chlorophyta). BMC PLANT BIOLOGY 2020; 20:25. [PMID: 31941449 PMCID: PMC6964094 DOI: 10.1186/s12870-019-2229-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Accepted: 12/30/2019] [Indexed: 05/10/2023]
Abstract
BACKGROUND The marine alga Ulva compressa is the dominant species in copper-polluted coastal areas in northern Chile. It has been shown that the alga tolerates micromolar concentrations of copper and accumulates copper at the intracellular level. Transcriptomic analyses were performed using total RNA of the alga cultivated with 10 μ M copper for 0, 1, 3 and 5 days using RNA-seq in order to identify processes involved in copper tolerance. RESULTS The levels of transcripts encoding proteins belonging to Light Harvesting Complex II (LHCII), photosystem II (PSII), cytochrome b6f, PSI, LHCI, ATP synthase and proteins involved in repair of PSII and protection of PSI were increased in the alga cultivated with copper. In addition, the level of transcripts encoding proteins of mitochondrial electron transport chain, ATP synthase, and enzymes involved in C, N and S assimilation were also enhanced. The higher percentages of increase in the level of transcripts were mainly observed at days 3 and 5. In contrast, transcripts involved protein synthesis and degradation, signal transduction, and replication and DNA repair, were decreased. In addition, net photosynthesis and respiration increased in the alga cultivated with copper, mainly at days 1 to 3. Furthermore, the activities of enzymes involved in C, N and S assimilation, rubisco, glutamine synthase and cysteine synthase, respectively, were also increased, mainly at days 1 and 3. CONCLUSIONS The marine alga U. compressa tolerates copper excess through a concomitant increase in expression of proteins involved in photosynthesis, respiration, and C, N and S assimilation, which represents an exceptional mechanism of copper tolerance.
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Affiliation(s)
- Daniel Laporte
- Laboratory of Marine Biotechnology, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda, 3363, Santiago, Chile
| | - Felipe Rodríguez
- Laboratory of Marine Biotechnology, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda, 3363, Santiago, Chile
| | - Alberto González
- Laboratory of Marine Biotechnology, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda, 3363, Santiago, Chile
| | - Antonio Zúñiga
- Laboratory of Marine Biotechnology, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda, 3363, Santiago, Chile
- HUB AMBIENTAL UPLA, Vicerrectoría de Investigación, Postgrado e Innovación, University of Playa Ancha, Avenida Carvallo 270, 2340000, Valparaíso, Chile
| | - Eduardo Castro-Nallar
- Center of Bioinformatics and Integrative Biology, Faculty of Life Sciences, University Andrés Bello, República 330, Santiago, Chile
| | - Claudio A Sáez
- HUB AMBIENTAL UPLA, Vicerrectoría de Investigación, Postgrado e Innovación, University of Playa Ancha, Avenida Carvallo 270, 2340000, Valparaíso, Chile
- Laboratory of Aquatic Environmental Research, Center of Advanced Studies, University of Playa Ancha, Traslaviña 450, Viña del Mar, Chile
| | - Alejandra Moenne
- Laboratory of Marine Biotechnology, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda, 3363, Santiago, Chile.
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Liu S, Hu ZM, Zhang Q, Yang X, Critchley AT, Duan D. PI signal transduction and ubiquitination respond to dehydration stress in the red seaweed Gloiopeltis furcata under successive tidal cycles. BMC PLANT BIOLOGY 2019; 19:516. [PMID: 31771523 PMCID: PMC6880600 DOI: 10.1186/s12870-019-2125-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2019] [Accepted: 11/08/2019] [Indexed: 05/13/2023]
Abstract
BACKGROUND Intermittent dehydration caused by tidal changes is one of the most important abiotic factors that intertidal seaweeds must cope with in order to retain normal growth and reproduction. However, the underlying molecular mechanisms for the adaptation of red seaweeds to repeated dehydration-rehydration cycles remain poorly understood. RESULTS We chose the red seaweed Gloiopeltis furcata as a model and simulated natural tidal changes with two consecutive dehydration-rehydration cycles occurring over 24 h in order to gain insight into key molecular pathways and regulation of genes which are associated with dehydration tolerance. Transcription sequencing assembled 32,681 uni-genes (GC content = 55.32%), of which 12,813 were annotated. Weighted gene co-expression network analysis (WGCNA) divided all transcripts into 20 modules, with Coral2 identified as the key module anchoring dehydration-induced genes. Pathways enriched analysis indicated that the ubiquitin-mediated proteolysis pathway (UPP) and phosphatidylinositol (PI) signaling system were crucial for a successful response in G. furcata. Network-establishing and quantitative reverse transcription PCR (qRT-PCR) suggested that genes encoding ubiquitin-protein ligase E3 (E3-1), SUMO-activating enzyme sub-unit 2 (SAE2), calmodulin (CaM) and inositol-1,3,4-trisphosphate 5/6-kinase (ITPK) were the hub genes which responded positively to two successive dehydration treatments. Network-based interactions with hub genes indicated that transcription factor (e.g. TFIID), RNA modification (e.g. DEAH) and osmotic adjustment (e.g. MIP, ABC1, Bam1) were related to these two pathways. CONCLUSIONS RNA sequencing-based evidence from G. furcata enriched the informational database for intertidal red seaweeds which face periodic dehydration stress during the low tide period. This provided insights into an increased understanding of how ubiquitin-mediated proteolysis and the phosphatidylinositol signaling system help seaweeds responding to dehydration-rehydration cycles.
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Affiliation(s)
- Shun Liu
- Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071 People’s Republic of China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266071 People’s Republic of China
- University of Chinese Academy of Sciences, Beijing, 100049 People’s Republic of China
| | - Zi-Min Hu
- Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071 People’s Republic of China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266071 People’s Republic of China
| | - Quansheng Zhang
- Ocean School, Yantai University, Yantai, 264005 People’s Republic of China
| | - Xiaoqi Yang
- Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071 People’s Republic of China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266071 People’s Republic of China
- University of Chinese Academy of Sciences, Beijing, 100049 People’s Republic of China
| | - Alan T. Critchley
- Verschuren Centre for Sustainability in Energy and Environment, University of Cape Breton, Sydney, Nova Scotia Canada
| | - Delin Duan
- Key Laboratory of Experimental Marine Biology, Center for Ocean Mega-Science, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071 People’s Republic of China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266071 People’s Republic of China
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9
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Wang X, Niu X, Chen Y, Sun Z, Han A, Lou X, Ge J, Li X, Yang Y, Jian J, Gonçalves RJ, Guan W. Transcriptome sequencing of a toxic dinoflagellate, Karenia mikimotoi subjected to stress from solar ultraviolet radiation. HARMFUL ALGAE 2019; 88:101640. [PMID: 31582153 DOI: 10.1016/j.hal.2019.101640] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2019] [Revised: 07/08/2019] [Accepted: 07/11/2019] [Indexed: 06/10/2023]
Abstract
Solar ultraviolet radiation (UVR) is a stress factor in aquatic environments and may act directly or indirectly on orgnisms in the upper layers of the water column. However, UVR effects are usually species-specific and difficult to extrapolate. Here we use the HAB-forming, toxic dinoflagellate Karenia mikimotoi (which was found to be relatively resistant in previous studies) to investigate its transcriptional responses to a one-week UVR exposure. For this, batch cultures of K. mikimotoi were grown with and without UVR, and their transcriptomes (generated via RNAseq technology) were compared. RNA-seq generated 45.31 million reads, which were further assembled to 202600 unigenes (>300bp). Among these, ca. 61% were annotated with NCBI, NR, GO, KOG, PFAM, Swiss-Prot, and KEGG database. Transcriptomic analysis revealed 722 differentially expressed unigenes (DEGs, defined as being within a |log2 fold change| ≥ 2 and padj < 0.05) responding to solar UVR, which were only 0.36% of all unigenes. 716 unigenes were down-regulated, and only 6 unigenes were up-regulated in the UVR compared to non-UVR treatment. KEGG pathway further analysis revealed DEGs were involved in the different pathway; genes involved in the ribosome, endocytosis and steroid biosynthesis pathways were highly down-regulated, but this was not the case for those involved in the energy metabolisms (including photosynthesis, oxidative phosphorylation) which may contribute to the sustainable growth observed in UVR treatment. The up-regulated expression of both zinc-finger proteins (ZFPs) and ribosomal protein L11 (RPL11) may be one of the acclimated mechanisms against UVR. In addition, this work identified down-regulated genes involved in fatty acid degradation and the hydrophobic branched chain amino acids (e.g., Valine, leucine, and isoleucine), which act as structural components of cell membranes modulating lipid homeostasis or turnover. In conclusion, the present study suggests that the toxic dinoflagellate K. mikimotoi has limited transcriptomic regulation but confirms that it appears as a tolerant species in response to solar UVR. These findings expand current knowledge of gene expression in HAB-forming species in response to natural environment factors such as solar radiation.
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Affiliation(s)
- Xinjie Wang
- Department of Marine Biotechnology, School of Laboratory Medicine and Life Science, Wenzhou Medical University, Wenzhou, Zhejiang 325035 China; Marine Biology Institute, Shantou University, Shantou, Guangdong 515063 China
| | - Xiaoqin Niu
- Department of Marine Biotechnology, School of Laboratory Medicine and Life Science, Wenzhou Medical University, Wenzhou, Zhejiang 325035 China
| | - Yiji Chen
- Department of Marine Biotechnology, School of Laboratory Medicine and Life Science, Wenzhou Medical University, Wenzhou, Zhejiang 325035 China
| | - Zhewei Sun
- Department of Marine Biotechnology, School of Laboratory Medicine and Life Science, Wenzhou Medical University, Wenzhou, Zhejiang 325035 China
| | - Axiang Han
- Department of Marine Biotechnology, School of Laboratory Medicine and Life Science, Wenzhou Medical University, Wenzhou, Zhejiang 325035 China
| | - Xiayuan Lou
- Department of Marine Biotechnology, School of Laboratory Medicine and Life Science, Wenzhou Medical University, Wenzhou, Zhejiang 325035 China
| | - Jingke Ge
- Department of Marine Biotechnology, School of Laboratory Medicine and Life Science, Wenzhou Medical University, Wenzhou, Zhejiang 325035 China
| | - Xuanwen Li
- Department of Marine Biotechnology, School of Laboratory Medicine and Life Science, Wenzhou Medical University, Wenzhou, Zhejiang 325035 China
| | - Yuqian Yang
- Department of Marine Biotechnology, School of Laboratory Medicine and Life Science, Wenzhou Medical University, Wenzhou, Zhejiang 325035 China
| | - Jianbo Jian
- Marine Biology Institute, Shantou University, Shantou, Guangdong 515063 China
| | - Rodrigo J Gonçalves
- Laboratorio de Oceanografía Biológica (LOBio), Centro para el Estudio de Sistemas Marinos (CESIMAR), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). U9120ACD, Puerto Madryn, Argentina
| | - Wanchun Guan
- Department of Marine Biotechnology, School of Laboratory Medicine and Life Science, Wenzhou Medical University, Wenzhou, Zhejiang 325035 China.
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10
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Buapet P, Mohammadi NS, Pernice M, Kumar M, Kuzhiumparambil U, Ralph PJ. Excess copper promotes photoinhibition and modulates the expression of antioxidant-related genes in Zostera muelleri. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2019; 207:91-100. [PMID: 30553148 DOI: 10.1016/j.aquatox.2018.12.005] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2018] [Revised: 12/03/2018] [Accepted: 12/04/2018] [Indexed: 05/08/2023]
Abstract
Copper (Cu) is an essential micronutrient for plants and as such is vital to many metabolic processes. Nevertheless, when present at elevated concentrations, Cu can exert toxic effects on plants by disrupting protein functions and promoting oxidative stress. Due to their proximity to the urbanised estuaries, seagrasses are vulnerable to chemical contamination via industrial runoff, waste discharges and leachates. Zostera muelleri is a common seagrass species that forms habitats in the intertidal areas along the temperate coast of Australia. Previous studies have shown the detrimental effects of Cu exposure on photosynthetic efficiency of Z. muelleri. The present study focuses on the impacts of sublethal Cu exposure on the physiological and molecular responses. By means of a single addition, plants were exposed to 250 and 500 μg Cu L-1 (corresponding to 3.9 and 7.8 μM, respectively) as well as uncontaminated artificial seawater (control) for 7 days. Chlorophyll fluorescence parameters, measured as the effective quantum yield (ϕPSII), the maximum quantum yield (Fv/Fm) and non-photochemical quenching (NPQ) were assessed daily, while Cu accumulation in leaf tissue, total reactive oxygen species (ROS) and the expression of genes involved in antioxidant activities and trace metal binding were determined after 1, 3 and 7 days of exposure. Z. muelleri accumulated Cu in the leaf tissue in a concentration-dependent manner and the bioaccumulation was saturated by day 3. Cu exposure resulted in an acute suppression of ϕPSII and Fv/Fm. These two parameters also showed a concentration- and time-dependent decline. NPQ increased sharply during the first few days before subsequently decreasing towards the end of the experiment. Cu accumulation induced oxidative stress in Z. muelleri as an elevated level of ROS was detected on day 7. Lower Cu concentration promoted an up-regulation of genes encoding Cu/Zn-superoxide dismutase (Cu/Zn-sod), ascorbate peroxidase (apx), catalase (cat) and glutathione peroxidase (gpx), whereas no significant change was detected with higher Cu concentration. Exposure to Cu at any concentration failed to induce regulation in the expression level of genes encoding metallothionein type 2 (mt2), metallothionein type 3 (mt3) and cytochrome c oxidase copper chaperone (cox17). It is concluded that chlorophyll fluorescence parameters provide timely probe of the status of photosynthetic machinery under Cu stress. In addition, when exposed to a moderate level of Cu, Z. muelleri mitigates any induced oxidative stress by up-regulating transcripts coding for antioxidant enzymes.
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Affiliation(s)
- Pimchanok Buapet
- Plant Physiology Laboratory, Department of Biology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, Thailand; Coastal Oceanography and Climate Change Research Center, Prince of Songkla University, Hat Yai, Songkhla, Thailand.
| | | | - Mathieu Pernice
- Climate Change Cluster, University of Technology Sydney, NSW, Australia
| | - Manoj Kumar
- Climate Change Cluster, University of Technology Sydney, NSW, Australia
| | | | - Peter J Ralph
- Climate Change Cluster, University of Technology Sydney, NSW, Australia
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11
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Khan S, Mao Y, Gao D, Riaz S, Niaz Z, Tang L, Khan S, Wang D. Identification of proteins responding to pathogen-infection in the red alga Pyropia yezoensis using iTRAQ quantitative proteomics. BMC Genomics 2018; 19:842. [PMID: 30482156 PMCID: PMC6260746 DOI: 10.1186/s12864-018-5229-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Accepted: 11/07/2018] [Indexed: 12/25/2022] Open
Abstract
BACKGROUND Pyropia yezoensis is an important marine crop which, due to its high protein content, is widely used as a seafood in China. Unfortunately, red rot disease, caused by Pythium porphyrae, seriously damages P. yezoensis farms every year in China, Japan, and Korea. Proteomic methods are often used to study the interactions between hosts and pathogens. Therefore, an iTRAQ-based proteomic analysis was used to identify pathogen-responsive proteins following the artificial infection of P. yezoensis with P. porphyrae spores. RESULTS A total of 762 differentially expressed proteins were identified, of which 378 were up-regulated and 384 were down-regulated following infection. A large amount of these proteins were involved in disease stress, carbohydrate metabolism, cell signaling, chaperone activity, photosynthesis, and energy metabolism, as annotated in the KEGG database. Overall, the data showed that P. yezoensis resists infection by inhibiting photosynthesis, and energy and carbohydrate metabolism pathways, as supported by changes in the expression levels of related proteins. The expression data are available via ProteomeXchange with the identifier PXD009363. CONCLUSIONS The current data provide an overall summary of the red algae responses to pathogen infection. This study improves our understanding of infection resistance in P. yezoensis, and may help in increasing the breeding of P. porphyrae-infection tolerant macroalgae.
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Affiliation(s)
- Sohrab Khan
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003 China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237 China
| | - Yunxiang Mao
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003 China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237 China
- College of Marine Life Sciences, Ocean University of China, Qingdao, 266003 China
| | - Dong Gao
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003 China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237 China
| | - Sadaf Riaz
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003 China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237 China
| | - Zeeshan Niaz
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003 China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237 China
| | - Lei Tang
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003 China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237 China
| | - Sohaib Khan
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003 China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237 China
| | - Dongmei Wang
- Key Laboratory of Marine Genetics and Breeding (Ocean University of China), Ministry of Education, Qingdao, 266003 China
- Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266237 China
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12
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Fierro C, López-Cristoffanini C, Meynard A, Lovazzano C, Castañeda F, Guajardo E, Contreras-Porcia L. Expression profile of desiccation tolerance factors in intertidal seaweed species during the tidal cycle. PLANTA 2017; 245:1149-1164. [PMID: 28289905 DOI: 10.1007/s00425-017-2673-0] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2016] [Accepted: 03/02/2017] [Indexed: 05/26/2023]
Abstract
The transcriptional modulation of desiccation tolerance factors in P. orbicularis explains its successful recuperation after water deficit. Differential responses to air exposure clarify seaweed distribution along intertidal rocky zones. Desiccation-tolerant seaweed species, such as Pyropia orbicularis, can tolerate near 96% water loss during air exposure. To understand the phenotypic plasticity of P. orbicularis to desiccation, several tolerance factors were assessed by RT-qPCR, Western-blot analysis, and enzymatic assays during the natural desiccation-rehydration cycle. Comparative enzymatic analyses were used to evidence differential responses between P. orbicularis and desiccation-sensitive species. The results showed that during desiccation, the relative mRNA levels of genes associated with basal metabolism [trehalose phosphate synthase (tps) and pyruvate dehydrogenase (pdh)] were overexpressed in P. orbicularis. Transcript levels related to antioxidant metabolism [peroxiredoxin (prx); thioredoxin (trx); catalase (cat); lipoxygenase (lox); ferredoxin (fnr); glutathione S-transferase (gst)], cellular detoxification [ABC transporter (abc) and ubiquitin (ubq)], and signal transduction [calmodulin (cam)] increased approximately 15- to 20-fold, with the majority returning to basal levels during the final hours of rehydration. In contrast, actin (act) and transcription factor 1 (tf1) transcripts were down-regulated. ABC transporter protein levels increased in P. orbicularis during desiccation, whereas PRX transcripts decreased. The antioxidant enzymes showed higher specific activity in P. orbicularis under desiccation, and sensitive species exhibited enzymatic inactivation and scarce ABC and PRX protein detection following prolonged desiccation. In conclusion, the reported findings contribute towards understanding the ecological distribution of intertidal seaweeds at the molecular and functional levels.
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Affiliation(s)
- Camila Fierro
- Departamento de Ecología y Biodiversidad, Facultad de Ecología y Recursos Naturales, Universidad Andres Bello, República 440, Santiago, Chile
| | - Camilo López-Cristoffanini
- Departamento de Biología Evolutiva, Ecología y Ciencias Ambientales, Facultad de Biología, Universidad de Barcelona, Diagonal 643, 08028, Barcelona, Spain
| | - Andrés Meynard
- Departamento de Ecología y Biodiversidad, Facultad de Ecología y Recursos Naturales, Universidad Andres Bello, República 440, Santiago, Chile
| | - Carlos Lovazzano
- Departamento de Ecología y Biodiversidad, Facultad de Ecología y Recursos Naturales, Universidad Andres Bello, República 440, Santiago, Chile
| | - Francisco Castañeda
- Departamento de Ecología y Biodiversidad, Facultad de Ecología y Recursos Naturales, Universidad Andres Bello, República 440, Santiago, Chile
| | - Eduardo Guajardo
- Departamento de Ecología y Biodiversidad, Facultad de Ecología y Recursos Naturales, Universidad Andres Bello, República 440, Santiago, Chile
| | - Loretto Contreras-Porcia
- Departamento de Ecología y Biodiversidad, Facultad de Ecología y Recursos Naturales, Universidad Andres Bello, República 440, Santiago, Chile.
- Center of Applied Ecology and Sustainability (CAPES), Pontificia Universidad Católica de Chile, Avda. Bernardo O'Higgins 340, Santiago, Chile.
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13
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Thompson SEM, Coates JC. Surface sensing and stress-signalling in Ulva and fouling diatoms - potential targets for antifouling: a review. BIOFOULING 2017; 33:410-432. [PMID: 28508711 DOI: 10.1080/08927014.2017.1319473] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2016] [Accepted: 04/11/2017] [Indexed: 06/07/2023]
Abstract
Understanding the underlying signalling pathways that enable fouling algae to sense and respond to surfaces is essential in the design of environmentally friendly coatings. Both the green alga Ulva and diverse diatoms are important ecologically and economically as they are persistent biofoulers. Ulva spores exhibit rapid secretion, allowing them to adhere quickly and permanently to a ship, whilst diatoms secrete an abundance of extracellular polymeric substances (EPS), which are highly adaptable to different environmental conditions. There is evidence, now supported by molecular data, for complex calcium and nitric oxide (NO) signalling pathways in both Ulva and diatoms being involved in surface sensing and/or adhesion. Moreover, adaptation to stress has profound effects on the biofouling capability of both types of organism. Targets for future antifouling coatings based on surface sensing are discussed, with an emphasis on pursuing NO-releasing coatings as a potentially universal antifouling strategy.
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Affiliation(s)
| | - Juliet C Coates
- a School of Biosciences , University of Birmingham , Birmingham , UK
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14
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Ismail GA, Ismail MM. Variation in oxidative stress indices of two green seaweeds growing under different heavy metal stresses. ENVIRONMENTAL MONITORING AND ASSESSMENT 2017; 189:68. [PMID: 28116602 DOI: 10.1007/s10661-017-5775-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2016] [Accepted: 01/09/2017] [Indexed: 06/06/2023]
Abstract
Concentrations of nine heavy metals (Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, and Zn) were determined in the green seaweed species Cladophora glomerata and Ulva compressa collected from El-Mex and Sidi Kirayr locations. The heavy metal concentrations in algal tissues were in direct correlation with their soluble concentrations in seawater with the descending order: Fe<Mn<Zn<Cu<Cr<Pb<Ni<Cd<Co. The bioaccumulation factor of iron and copper was higher in both tested species collected from El-Mex, while it was maximum for cadmium in Sidi Kirayr location. This metal contamination led to apparent alternation in algal thalli morphology. The results showed that C. glomerata had a superior adaptation to metal stress than U. compressa, due to its ability to produce non-enzymatic and enzymatic compounds for scavenging of the produced reactive oxygen species. The recorded contents of the oxidative stress indices (phenols, antioxidant activity, lipid peroxidation, hydrogen peroxide, and ascorbic acid) and the antioxidant enzymes (catalase, peroxidase, and superoxide dismutase) were higher in both tested seaweeds from El-Mex bay. Additionally, the estimated metal pollution index and pollution load index for the tested algae and seawaters ensured their ability as metal pollution bioindicators for monitoring marine environment quality and as biomarkers for oxidative damage assessment.
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Affiliation(s)
- Gehan A Ismail
- Botany Department, Faculty of Science, Tanta University, Tanta, 31527, Egypt.
| | - Mona M Ismail
- Marine Environmental Division, National Institute of Oceanography and Fisheries, Alexandria, 21556, Egypt
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15
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Laporte D, Valdés N, González A, Sáez CA, Zúñiga A, Navarrete A, Meneses C, Moenne A. Copper-induced overexpression of genes encoding antioxidant system enzymes and metallothioneins involve the activation of CaMs, CDPKs and MEK1/2 in the marine alga Ulva compressa. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2016; 177:433-40. [PMID: 27395803 DOI: 10.1016/j.aquatox.2016.06.017] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2016] [Revised: 06/16/2016] [Accepted: 06/22/2016] [Indexed: 05/14/2023]
Abstract
Transcriptomic analyses were performed in the green macroalga Ulva compressa cultivated with 10μM copper for 24h. Nucleotide sequences encoding antioxidant enzymes, ascorbate peroxidase (ap), dehydroascorbate reductase (dhar) and glutathione reductase (gr), enzymes involved in ascorbate (ASC) synthesis l-galactose dehydrogenase (l-gdh) and l-galactono lactone dehydrogenase (l-gldh), in glutathione (GSH) synthesis, γ-glutamate-cysteine ligase (γ-gcl) and glutathione synthase (gs), and metal-chelating proteins metallothioneins (mt) were identified. Amino acid sequences encoded by transcripts identified in U. compressa corresponding to antioxidant system enzymes showed homology mainly to plant and green alga enzymes but those corresponding to MTs displayed homology to animal and plant MTs. Level of transcripts encoding the latter proteins were quantified in the alga cultivated with 10μM copper for 0-12 days. Transcripts encoding enzymes of the antioxidant system increased with maximal levels at day 7, 9 or 12, and for MTs at day 3, 7 or 12. In addition, the involvement of calmodulins (CaMs), calcium-dependent protein kinases (CDPKs), and the mitogen-activated protein kinase kinase (MEK1/2) in the increase of the level of the latter transcripts was analyzed using inhibitors. Transcript levels decreased with inhibitors of CaMs, CDPKs and MEK1/2. Thus, copper induces overexpression of genes encoding antioxidant enzymes, enzymes involved in ASC and GSH syntheses and MTs. The increase in transcript levels may involve the activation of CaMs, CDPKs and MEK1/2 in U. compressa.
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Affiliation(s)
- Daniel Laporte
- Marine Biotechnology Laboratory, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda 3363, Santiago, Chile
| | - Natalia Valdés
- Marine Biotechnology Laboratory, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda 3363, Santiago, Chile
| | - Alberto González
- Marine Biotechnology Laboratory, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda 3363, Santiago, Chile
| | - Claudio A Sáez
- Laboratory of Coastal Toxicology, Center of Advanced Studies, University of Playa Ancha, Traslaviña 450, Viña del Mar, Chile
| | - Antonio Zúñiga
- Marine Biotechnology Laboratory, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda 3363, Santiago, Chile
| | - Axel Navarrete
- Marine Biotechnology Laboratory, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda 3363, Santiago, Chile
| | - Claudio Meneses
- Centro de Biotecnología Vegetal, Facultad de Ciencias Biológicas, Universidad Andrés Bello, Chile; FONDAP, Center for Genome Regulation, Universidad Andrés Bello, Chile
| | - Alejandra Moenne
- Marine Biotechnology Laboratory, Faculty of Chemistry and Biology, University of Santiago of Chile, Alameda 3363, Santiago, Chile.
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16
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Guo R, Lim WA, Ki JS. Genome-wide analysis of transcription and photosynthesis inhibition in the harmful dinoflagellate Prorocentrum minimum in response to the biocide copper sulfate. HARMFUL ALGAE 2016; 57:27-38. [PMID: 30170719 DOI: 10.1016/j.hal.2016.05.004] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2016] [Revised: 05/18/2016] [Accepted: 05/19/2016] [Indexed: 06/08/2023]
Abstract
Copper is an essential trace metal for organisms; however, excess copper may damage cellular processes. Their efficiency and physiological effects of biocides have been well documented; however, molecular transcriptome responses to biocides are insufficiently studied. In the present study, a 6.0K oligonucleotide chip was developed to investigate the molecular responses of the harmful dinoflagellate Prorocentrum minimum to copper sulfate (CuSO4) treatment. The results revealed that 515 genes (approximately 8.6%) responded to CuSO4, defined as being within a 2-fold change. Further, KEGG pathway analysis showed that differentially expressed genes (DEGs) were involved in ribosomal function, RNA transport, carbon metabolism, biosynthesis of amino acids, photosystem maintenance, and other cellular processes. Among the DEGs, 49 genes were related to chloroplasts and mitochondria. Furthermore, the genes involved in the RAS signaling pathway, MAPK signaling pathway, and transport pathways were identified. An additional experiment showed that the photosynthesis efficiency decreased considerably, and reactive oxygen species (ROS) production increased in P. minimum after CuSO4 exposure. These results suggest that CuSO4 caused cellular oxidative stress in P. minimum, affecting the ribosome and mitochondria, and severely damaged the photosystem. These effects may potentially lead to cell death, although the dinoflagellate has developed a complex signal transduction process to combat copper toxicity.
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Affiliation(s)
- Ruoyu Guo
- Department of Life Science, College of Natural Sciences, Sangmyung University, Seoul 03016, Republic of Korea
| | - Weol-Ae Lim
- Oceanic Climate & Ecology Research Division, the National Institute of Fisheries Science (NISF), Busan 46083, Republic of Korea
| | - Jang-Seu Ki
- Department of Life Science, College of Natural Sciences, Sangmyung University, Seoul 03016, Republic of Korea.
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17
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Moenne A, González A, Sáez CA. Mechanisms of metal tolerance in marine macroalgae, with emphasis on copper tolerance in Chlorophyta and Rhodophyta. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2016; 176:30-37. [PMID: 27107242 DOI: 10.1016/j.aquatox.2016.04.015] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2015] [Revised: 04/05/2016] [Accepted: 04/11/2016] [Indexed: 06/05/2023]
Abstract
Green and red macroalgae are closely related organisms, and with terrestrial plants, and constitute the base of marine food webs in coastal ecosystems. Green and red seaweeds, as all living organisms, require essential metals, such as copper, iron, zinc, which can act as co-factors for several proteins and enzymes; however, these metals in excess can induce stress and impair cell viability. Most important negative effects of metal excess are related to the induction of an oxidative stress condition, characterized by the over-accumulation of Reactive Oxygen Species (ROS). In this respect, copper, abundant in wastewaters disposed to coastal environments from domestic and industrial activities, has been one of the most studied metals. Different investigations have provided evidence that green and red macroalgae display several defenses against copper excess to prevent, or at least reduce, stress and damage, among which are cellular exclusion mechanisms, synthesis of metal-chelating compounds, and the activation of the antioxidant system. Most important defense mechanisms identified in green and red seaweed involve: metal-binding to cell wall and epibionts; syntheses of metallothioneins and phytochelatins that accumulate in the cytoplasm; and the increase in the activity of antioxidant enzymes such as superoxide dismutase, ascorbate peroxidase, glutathione peroxidase and catalase, and greater production of antioxidant metabolites as glutathione and ascorbate in organelles and the cytoplasm. In this review, we go through historical records, latest advances, and pending tasks aiming to expand our current knowledge on defense mechanisms to copper excess in green and red macroalgae, with emphasis on biochemical and molecular aspects.
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Affiliation(s)
- Alejandra Moenne
- Faculty of Chemistry and Biology, University of Santiago of Chile, Santiago, Chile.
| | - Alberto González
- Faculty of Chemistry and Biology, University of Santiago of Chile, Santiago, Chile
| | - Claudio A Sáez
- Center of Advanced Studies, University of Playa Ancha, Viña del Mar, Chile.
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Han X, Yin H, Song X, Zhang Y, Liu M, Sang J, Jiang J, Li J, Zhuo R. Integration of small RNAs, degradome and transcriptome sequencing in hyperaccumulator Sedum alfredii uncovers a complex regulatory network and provides insights into cadmium phytoremediation. PLANT BIOTECHNOLOGY JOURNAL 2016; 14:1470-83. [PMID: 26801211 PMCID: PMC5066797 DOI: 10.1111/pbi.12512] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2015] [Revised: 11/05/2015] [Accepted: 11/13/2015] [Indexed: 05/15/2023]
Abstract
The hyperaccumulating ecotype of Sedum alfredii Hance is a cadmium (Cd)/zinc/lead co-hyperaccumulating species of Crassulaceae. It is a promising phytoremediation candidate accumulating substantial heavy metal ions without obvious signs of poisoning. However, few studies have focused on the regulatory roles of miRNAs and their targets in the hyperaccumulating ecotype of S. alfredii. Here, we combined analyses of the transcriptomics, sRNAs and the degradome to generate a comprehensive resource focused on identifying key regulatory miRNA-target circuits under Cd stress. A total of 87 721 unigenes and 356 miRNAs were identified by deep sequencing, and 79 miRNAs were differentially expressed under Cd stress. Furthermore, 754 target genes of 194 miRNAs were validated by degradome sequencing. A gene ontology (GO) enrichment analysis of differential miRNA targets revealed that auxin, redox-related secondary metabolism and metal transport pathways responded to Cd stress. An integrated analysis uncovered 39 pairs of miRNA targets that displayed negatively correlated expression profiles. Ten miRNA-target pairs also exhibited negative correlations according to a real-time quantitative PCR analysis. Moreover, a coexpression regulatory network was constructed based on profiles of differentially expressed genes. Two hub genes, ARF4 (auxin response factor 4) and AAP3 (amino acid permease 3), which might play central roles in the regulation of Cd-responsive genes, were uncovered. These results suggest that comprehensive analyses of the transcriptomics, sRNAs and the degradome provided a useful platform for investigating Cd hyperaccumulation in S. alfredii, and may provide new insights into the genetic engineering of phytoremediation.
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Affiliation(s)
- Xiaojiao Han
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, Zhejiang, China
| | - Hengfu Yin
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, Zhejiang, China
| | - Xixi Song
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, Zhejiang, China
| | - Yunxing Zhang
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, Zhejiang, China
| | - Mingying Liu
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, Zhejiang, China
| | - Jiang Sang
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, Zhejiang, China
| | - Jing Jiang
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, Zhejiang, China
| | - Jihong Li
- Key Laboratory of Agricultural Ecology and Environment, College of Forestry, Shandong Agricultural University, Tai'an, Shandong, China
| | - Renying Zhuo
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China
- Key Laboratory of Tree Breeding of Zhejiang Province, The Research Institute of Subtropical of Forestry, Chinese Academy of Forestry, Hangzhou, Zhejiang, China
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Guo R, Wang H, Suh YS, Ki JS. Transcriptomic profiles reveal the genome-wide responses of the harmful dinoflagellate Cochlodinium polykrikoides when exposed to the algicide copper sulfate. BMC Genomics 2016; 17:29. [PMID: 26732698 PMCID: PMC4702327 DOI: 10.1186/s12864-015-2341-3] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2015] [Accepted: 12/22/2015] [Indexed: 11/29/2022] Open
Abstract
Background Harmful algal blooms (HABs) caused by the dinoflagellate Cochlodinium polykrikoides lead to severe environmental impacts in oceans worldwide followed by huge economic losses. Algicide agent copper sulfate (CuSO4) is regard as an economical and effective agent for HABs mitigation; its biochemical and physiological effects were revealed in C. polykrikoides. However, molecular mechanisms of CuSO4 effect on the C. polykrikoides, even other HAB species, have not been investigated. The present study investigated the transcriptional response of C. polykrikoides against CuSO4 treatments, with the aim of providing certain molecular mechanism of CuSO4 effect on the C. polykrikoides blooms. Results RNA-seq generated 173 million reads, which were further assembled to 191,212 contigs. 43.3 %, 33.9 %, and 15.6 % of contigs were annotated with NCBI NR, GO, and KEGG database, respectively. Transcriptomic analysis revealed 20.6 % differential expressed contigs, which grouped into 8 clusters according to K-means clustering analysis, responding to CuSO4; 848 contigs were up-regulated and 746 contigs were down-regulated more than 2-fold changes from 12 h to 48 h exposure. KEGG pathway analysis of eukaryotic homologous genes revealed the differentially expressed genes (DEGs) were involved in diverse pathway; amongst, the genes involved in the translation, spliceosome, and/or signal transduction genes were highly regulated. Most of photosystem related genes were down-regulated and most of mitochondria related genes were up-regulated. In addition, the genes involved in the copper ion binding or transporting and antioxidant systems were identified. Measurement of chlorophyll fluorescence showed that photosynthesis was significantly inhibited by CuSO4 exposure. Conclusions This study reported the first transcriptome of the C. polykrikoides. The widely differential expressed photosystem genes suggested photosynthetic machinery were severely affected, and may further contribute to the cell death. Furthermore, gene translation and transcription processes may be disrupted, inhibiting cell growth and proliferation, and possibly accelerating cell death. However, antioxidant systems resistant to CuSO4 caused stress; mitochondrion may compensate for photosynthesis efficiency decreasing caused energy deficiency. In addition, various signal transduction pathways may be involved in the CuSO4 induced regulation network in the C. polykrikoides. These data provide the potential transcriptomic mechanism to explain the algicide CuSO4 effect on the harmful dinoflagellate C. polykrikoides. Electronic supplementary material The online version of this article (doi:10.1186/s12864-015-2341-3) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Ruoyu Guo
- Department of Life Science, College of Natural Sciences, Sangmyung University, Seoul, 110-743, Korea.
| | - Hui Wang
- Department of Life Science, College of Natural Sciences, Sangmyung University, Seoul, 110-743, Korea
| | - Young Sang Suh
- Fishery and Ocean Information Division, National Fisheries Research & Development Institute, Busan, 619-705, Korea.
| | - Jang-Seu Ki
- Department of Life Science, College of Natural Sciences, Sangmyung University, Seoul, 110-743, Korea.
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Holzinger A, Herburger K, Kaplan F, Lewis LA. Desiccation tolerance in the chlorophyte green alga Ulva compressa: does cell wall architecture contribute to ecological success? PLANTA 2015; 242:477-92. [PMID: 25896374 PMCID: PMC4498240 DOI: 10.1007/s00425-015-2292-6] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2014] [Accepted: 03/31/2015] [Indexed: 05/24/2023]
Abstract
MAIN CONCLUSION Desiccation leads to structural changes of the inner pectic cell wall layers in Ulva compressa. This contributes to protection against mechanical damage due to desiccation-rehydration cycles. Ulva compressa, characterized by rbcL phylogeny, is a common species in the Mediterranean Sea. Ulva as an intertidal species tolerates repeated desiccation-rehydration cycles in nature; the physiological and structural basis were investigated under experimental conditions here. Desiccation to 73% relative water content (RWC) led to a significant decrease of the maximum quantum yield of photosystem II (F v/F m) to about half of the initial value. A reduction to 48 or 27% RWC caused a more drastic effect and thalli were only able to recover fully from desiccation to 73% RWC. Relative electron transport rates were stimulated at 73% RWC, but decreased significantly at 48 and 27% RWC, respectively. Imaging-PAM analysis demonstrated a homogenous desiccation process within individual thallus discs. The different cell wall layers of U. compressa were characterized by standard staining procedures, i.e. calcofluor white and aniline blue for structural components (cellulose, callose), ruthenium red for pectins and toluidine blue for acidic polysaccharides. Already a reduction to 73% RWC caused severe changes of the cell walls. The inner pectin-rich layers followed the shrinkage process of the cytoplasm, while the outer denser fibrillar layers maintained their shape. In this way, the thalli were not plasmolyzed during water loss, and upon recovery not negatively influenced by any mechanical damage. Transmission electron microscopy corroborated the arrangement of the different layers clearly distinguishable by their texture and electron density. We suggest the flexibility of the pectin-rich cell wall layers as a major contribution to desiccation tolerance in Ulva.
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Affiliation(s)
- Andreas Holzinger
- Institute of Botany, Functional Plant Biology, University of Innsbruck, Sternwartestrasse 15, 6020, Innsbruck, Austria,
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Schmidt ÉC, Kreusch M, Felix MRDL, Pereira DT, Costa GB, Simioni C, Ouriques LC, Farias-Soares FL, Steiner N, Chow F, Ramlov F, Maraschin M, Bouzon ZL. Effects of Ultraviolet Radiation (UVA+UVB) and Copper on the Morphology, Ultrastructural Organization and Physiological Responses of the Red AlgaPterocladiella capillacea. Photochem Photobiol 2015; 91:359-70. [DOI: 10.1111/php.12396] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2014] [Accepted: 11/18/2014] [Indexed: 11/27/2022]
Affiliation(s)
- Éder C. Schmidt
- Postdoctoral Research of Postgraduate Program in Cell Biology and Development; Department of Cell Biology, Embryology and Genetics; Federal University of Santa Catarina; Florianópolis SC Brazil
- Department of Cell Biology, Embryology and Genetics; Plant Cell Biology Laboratory; Federal University of Santa Catarina; Florianópolis SC Brazil
| | - Marianne Kreusch
- Department of Cell Biology, Embryology and Genetics; Plant Cell Biology Laboratory; Federal University of Santa Catarina; Florianópolis SC Brazil
| | - Marthiellen R. de L. Felix
- Department of Cell Biology, Embryology and Genetics; Plant Cell Biology Laboratory; Federal University of Santa Catarina; Florianópolis SC Brazil
| | - Debora T. Pereira
- Department of Cell Biology, Embryology and Genetics; Plant Cell Biology Laboratory; Federal University of Santa Catarina; Florianópolis SC Brazil
| | - Giulia B. Costa
- Department of Cell Biology, Embryology and Genetics; Plant Cell Biology Laboratory; Federal University of Santa Catarina; Florianópolis SC Brazil
| | - Carmen Simioni
- Department of Cell Biology, Embryology and Genetics; Plant Cell Biology Laboratory; Federal University of Santa Catarina; Florianópolis SC Brazil
| | - Luciane C. Ouriques
- Department of Cell Biology, Embryology and Genetics; Plant Cell Biology Laboratory; Federal University of Santa Catarina; Florianópolis SC Brazil
| | | | - Neusa Steiner
- Department of Botany; Federal University of Santa Catarina; Florianópolis SC Brazil
| | - Fungyi Chow
- Department of Botany; Institute of Bioscience; University of São Paulo; São Paulo SP Brazil
| | - Fernanda Ramlov
- Plant Morphogenesis and Biochemistry Laboratory; Federal University of Santa Catarina; Florianópolis SC Brazil
| | - Marcelo Maraschin
- Plant Morphogenesis and Biochemistry Laboratory; Federal University of Santa Catarina; Florianópolis SC Brazil
| | - Zenilda L. Bouzon
- Department of Cell Biology, Embryology and Genetics; Plant Cell Biology Laboratory; Federal University of Santa Catarina; Florianópolis SC Brazil
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Jara C, Gaete H, Lobos G, Hidalgo ME. Oxidative stress in the mollusk Echinolittorina peruviana (Gasteropoda: Littorinidae, Lamarck, 1822) and trace metals in coastal sectors with mining activity. ECOTOXICOLOGY (LONDON, ENGLAND) 2014; 23:1099-1108. [PMID: 24829115 DOI: 10.1007/s10646-014-1253-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 04/27/2014] [Indexed: 06/03/2023]
Abstract
The aim of the study was to evaluate the effect of coastal waters of sites with mining activity in Echinolittorina peruviana, through oxidative stress biomarkers and heavy metals determination both in water and in tissue. Organisms were collected in the intertidal zone in areas with and without mining activity. Metal concentrations in the water and tissues, and also, the following biomarkers of oxidative stress: antioxidant enzyme activity, superoxide dismutase and catalase, non-enzymatic oxidative capacity (TRAP), oxidative damage to proteins (carbonyls) and TBARS, were measured The concentrations of accumulated metals had the following order Fe > Cu > Cd > Zn > Cr > Mo > As; the highest concentrations of metals in water and tissues were found in Caleta Palito and Chañaral. Results suggest that the coastal waters with mining activity and greatest concentrations of copper and iron induced the greater antioxidant response and oxidative damage to lipids in E. peruviana.
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Affiliation(s)
- C Jara
- Laboratorio de Investigación-Estrés Oxidativo, Facultad de Medicina, Universidad de Valparaíso, Av. Brasil, 1560, Valparaíso, Chile
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Valmonte GR, Arthur K, Higgins CM, MacDiarmid RM. Calcium-dependent protein kinases in plants: evolution, expression and function. PLANT & CELL PHYSIOLOGY 2014; 55:551-69. [PMID: 24363288 DOI: 10.1093/pcp/pct200] [Citation(s) in RCA: 76] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Calcium-dependent protein kinases (CPKs) are plant proteins that directly bind calcium ions before phosphorylating substrates involved in metabolism, osmosis, hormone response and stress signaling pathways. CPKs are a large multigene family of proteins that are present in all plants studied to date, as well as in protists, oomycetes and green algae, but are not found in animals and fungi. Despite the increasing evidence of the importance of CPKs in developmental and stress responses from various plants, a comprehensive genome-wide analysis of CPKs from algae to higher plants has not been undertaken. This paper describes the evolution of CPKs from green algae to plants using a broadly sampled phylogenetic analysis and demonstrates the functional diversification of CPKs based on expression and functional studies in different plant species. Our findings reveal that CPK sequence diversification into four major groups occurred in parallel with the terrestrial transition of plants. Despite significant expansion of the CPK gene family during evolution from green algae to higher plants, there is a high level of sequence conservation among CPKs in all plant species. This sequence conservation results in very little correlation between CPK evolutionary groupings and functional diversity, making the search for CPK functional orthologs a challenge.
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Affiliation(s)
- Gardette R Valmonte
- Institute for Applied Ecology New Zealand, School of Applied Sciences, Auckland University of Technology, New Zealand
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24
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Abiotic and oxidative stress-dependent regulation of expression of the thioredoxin h multigenic family in grape Vitis vinifera. Biologia (Bratisl) 2013. [DOI: 10.2478/s11756-013-0309-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Lovazzano C, Serrano C, Correa JA, Contreras-Porcia L. Comparative analysis of peroxiredoxin activation in the brown macroalgae Scytosiphon gracilis and Lessonia nigrescens (Phaeophyceae) under copper stress. PHYSIOLOGIA PLANTARUM 2013; 149:378-88. [PMID: 23489129 DOI: 10.1111/ppl.12047] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2012] [Revised: 02/26/2013] [Accepted: 02/27/2013] [Indexed: 06/01/2023]
Abstract
Among thiol-dependent peroxidases (TDPs) peroxiredoxins (PRXs) standout, since they are enzymes capable of reducing hydrogen peroxide, alkylhydroperoxides and peroxynitrite, and have been detected in a proteomic study of the copper-tolerant species Scytosiphon gracilis. In order to determine the importance of these enzymes in copper-stress tolerance, TDP activity and type II peroxiredoxin (II PRX) protein expression were compared between the opportunistic S. gracilis and the brown kelp Lessonia nigrescens, a species absent from copper-impacted sites due to insufficient copper-tolerance mechanisms. Individuals of both species were cultured with increasing copper concentrations (0-300 µg l(-1) Cu) for 96 h and TDP activity and lipoperoxides (LPXs) were determined together with II PRX expression by immunofluorescence and Western blot analysis. The results showed that TDP activity was higher in S. gracilis than L. nigrescens in all copper concentrations, independent of the reducing agent used (dithiothreitol, thioredoxin or glutaredoxin). This activity was copper inhibited in L. nigrescens at lower copper concentrations (20 µg l(-1) Cu) compared to S. gracilis (100 µg l(-1) Cu). The loss of activity coincided in both species with an increase in LPX, which suggests that TDP may control LPX production. Moreover, II PRX protein levels increased under copper stress only in S. gracilis. These results suggest that in S. gracilis TDP, particularly type II peroxiredoxin (II PRX), acts as an active antioxidant barrier attenuating the LPX levels generated by copper, which is not the case in L. nigrescens. Thus, from an ecological point of view these results help explaining the inability of L. nigrescens to flourish in copper-enriched environments.
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Affiliation(s)
- Carlos Lovazzano
- Departamento de Ecología y Biodiversidad, Facultad de Ecología y Recursos Naturales, Universidad Andrés Bello, Santiago, Chile; Departamento de Ecología, Center for Advanced Studies in Ecology and Biodiversity, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile
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Nestler H, Groh KJ, Schönenberger R, Eggen RIL, Suter MJF. Linking proteome responses with physiological and biochemical effects in herbicide-exposed Chlamydomonas reinhardtii. J Proteomics 2012; 75:5370-85. [PMID: 22749931 DOI: 10.1016/j.jprot.2012.06.017] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2012] [Revised: 05/24/2012] [Accepted: 06/18/2012] [Indexed: 01/17/2023]
Abstract
Exposure to a toxicant causes proteome alterations in an organism. In ecotoxicology, analysis of these changes may allow linking them to physiological and biochemical endpoints, providing insights into subcellular exposure effects and responses and, ultimately mechanisms of action. Based on this, useful protein markers of exposure can be identified. We investigated the proteome changes induced by the herbicides paraquat, diuron, and norflurazon in the green alga Chlamydomonas reinhardtii. Shotgun proteome profiling and spectral counting quantification in combination with G-test statistics revealed significant changes in protein abundance. Functional enrichment analysis identified protein groups that responded to the exposures. Significant changes were observed for 149-254 proteins involved in a variety of metabolic pathways. While some proteins and functional protein groups responded to several tested exposure conditions, others were affected only in specific cases. Expected as well as novel candidate markers of herbicide exposure were identified, the latter including the photosystem II subunit PsbR or the VIPP1 protein. We demonstrate that the proteome response to toxicants is generally more sensitive than the physiological and biochemical endpoints, and that it can be linked to effects on these levels. Thus, proteome profiling may serve as a useful tool for ecotoxicological investigations in green algae.
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Affiliation(s)
- Holger Nestler
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Ueberlandstrasse 133, 8600 Duebendorf, Switzerland
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Contreras-Porcia L, Callejas S, Thomas D, Sordet C, Pohnert G, Contreras A, Lafuente A, Flores-Molina MR, Correa JA. Seaweeds early development: detrimental effects of desiccation and attenuation by algal extracts. PLANTA 2012; 235:337-348. [PMID: 21909760 DOI: 10.1007/s00425-011-1512-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2011] [Accepted: 08/25/2011] [Indexed: 05/31/2023]
Abstract
The effects of desiccation on the early development stages of Mazzaella laminarioides, Scytosiphon lomentaria and Lessonia nigrescens, algal species with different patterns of distribution across the intertidal zone, were examined in the laboratory. In addition, the protective effect against desiccation was evaluated using algal extracts, including those from Porphyra columbina, a macroalga tolerant to desiccation that lives in the uppermost part of the intertidal zone. Our results showed that M. laminarioides displayed the highest resistance to daily desiccation, followed by S. lomentaria, whereas L. nigrescens was the most susceptible. Spores from L. nigrescens exposed to desiccation, although being able to germinate, ceased further post-germination development. In addition, our results showed that all species exposed to extracts from desiccated P. columbina successfully completed their development and strongly suggest the occurrence of compounds with protective properties that help in attenuating the stress caused by desiccation. Finally, our results indicate that the magnitude of the effects generated by desiccation on the early algal development is related to the position of the species in the intertidal zone, and that the protective effects of P. columbina extracts reveal an exceptional metabolism of this species under desiccation stress.
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Affiliation(s)
- Loretto Contreras-Porcia
- Departamento de Ecología y Biodiversidad, Facultad de Ecología y Recursos Naturales, Universidad Andrés Bello, República 470, 8370251 Santiago, Chile.
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Seaweed Responses to Environmental Stress: Reactive Oxygen and Antioxidative Strategies. ECOLOGICAL STUDIES 2012. [DOI: 10.1007/978-3-642-28451-9_6] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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The validity of a reference gene is highly dependent on the experimental conditions in green alga Ulva linza. Curr Genet 2011; 58:13-20. [PMID: 22205301 DOI: 10.1007/s00294-011-0361-3] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2011] [Revised: 12/16/2011] [Accepted: 12/18/2011] [Indexed: 12/17/2022]
Abstract
Normalization based on inappropriate reference gene may lead to the reduction of the accuracy of RT-qPCR. Although determination of suitable reference genes is essential to RT-qPCR studies, reports on the evaluation of reference genes in Ulva linza, a ubiquitous green-tide forming alga, are lacking. The expression levels of ten candidate reference genes were analyzed in U. linza across different experimental treatments, and the best-ranked reference genes differed across the treatments. The most suitable reference genes were tubulin2 (TUB2) among different salinity and UV treatments. Histone 2 (H2) was stably expressed in different temperature and desiccation stress treatments. 18S rRNA exhibited better expression stability in different light intensity treatments. While all tested samples were considered, none of single gene was widely applicable as a reference gene. Moreover, using a combination of two genes as reference genes might improve the reliability of gene expression by RT-qPCR, and the combination of TUB1 and TUB2 was selected as ideal for all tested samples. The results suggest that assessing the stability of reference gene expression patterns, determining candidates, and testing their suitability are required for each experimental investigation. The results will guide the selection of reference genes for gene expression studies in U. linza.
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Yuan H, Meng X, Gao Q, Qu W, Xu T, Xu Z, Song R. The characterization of two peroxiredoxin genes in Dunaliella viridis provides insights into antioxidative response to salt stress. PLANT CELL REPORTS 2011; 30:1503-1512. [PMID: 21431909 DOI: 10.1007/s00299-011-1060-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2010] [Revised: 03/06/2011] [Accepted: 03/10/2011] [Indexed: 05/30/2023]
Abstract
Peroxiredoxins (Prxs), a group of antioxidant enzymes, are an important component of the oxidative defense system and have been demonstrated to function as peroxidases, sensors of H(2)O(2)-mediated signaling and/or chaperones. In this study, a cDNA library was constructed from a halotolerant alga, Dunaliella viridis, and was used in a functional complementation screen for antioxidative genes in an oxidative sensitive yeast mutant. Two Prx genes, DvPrx1 and DvPrx2, were obtained from this screen. These two genes were classified as type II Prx and 2-Cys Prx based on amino acid sequence and phylogenetic analysis. When over-expressed in yeast cells, both Prx genes were able to confer better oxidative tolerance and decrease the level of reactive oxygen species (ROS). Subcellular localization experiments in tobacco cells revealed that both DvPrx1 and DvPrx2 were localized in the cytosol. The transcription of DvPrx1 and DvPrx2 can be induced by hypersalinity shock, but is not obviously affected by treatment with high levels of oxidant. Our results shed light on the function and regulation of Prx genes from Dunaliella and their potential roles in salt tolerance.
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Affiliation(s)
- Huijuan Yuan
- Shanghai Key Laboratory of Bio-Energy Crops, School of Life Sciences, Shanghai University, 99 Shangda Road, 200444, Shanghai, People's Republic of China
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