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Gamlin J, Caird R, Sachdeva N, Miao Y, Walecka-Hutchison C, Mahendra S, K De Long S. Developing a microbial community structure index (MCSI) as an approach to evaluate and optimize bioremediation performance. Biodegradation 2024:10.1007/s10532-024-10093-2. [PMID: 39017970 DOI: 10.1007/s10532-024-10093-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Accepted: 07/03/2024] [Indexed: 07/18/2024]
Abstract
Much attention is placed on organohalide-respiring bacteria (OHRB), such as Dehalococcoides, during the design and performance monitoring of chlorinated solvent bioremediation systems. However, many OHRB cannot function effectively without the support of a diverse group of other microbial community members (MCMs), who play key roles fermenting organic matter into more readily useable electron donors, producing corrinoids such as vitamin B12, or facilitating other important metabolic processes or biochemical reactions. While it is known that certain MCMs support dechlorination, a metric considering their contribution to bioremediation performance has yet to be proposed. Advances in molecular biology tools offer an opportunity to better understand the presence and activity of specific microbes, and their relation to bioremediation performance. In this paper, we test the hypothesis that a specific microbial consortium identified within 16S ribosomal ribonucleic acid (rRNA) gene next generation sequencing (NGS) data can be predictive of contaminant degradation rates. Field-based data from multiple contaminated sites indicate that increasing relative abundance of specific MCMs correlates with increasing first-order degradation rates. Based on these results, we present a framework for computing a simplified metric using NGS data, the Microbial Community Structure Index, to evaluate the adequacy of the microbial ecosystem during assessment of bioremediation performance.
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Affiliation(s)
- Jeff Gamlin
- GSI Environmental Inc, 13949 West Colfax Ave, Suite 210, Lakewood, CO, 80401, USA.
| | - Renee Caird
- Jacobs, 120 St. James Ave, Boston, MA, 02116, USA
| | - Neha Sachdeva
- Department of Civil and Environmental Engineering, Colorado State University, Fort Collins, Colorado, CO, 80523, USA
| | - Yu Miao
- Department of Civil and Environmental Engineering, Northeastern University, Boston, MA, 02115, USA
| | | | - Shaily Mahendra
- Department of Civil and Environmental Engineering, University of California, Los Angeles, CA, 90095, USA
| | - Susan K De Long
- Department of Civil and Environmental Engineering, Colorado State University, Fort Collins, Colorado, CO, 80523, USA
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2
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Wang J, Wu S, Yang Q, Liu B, Yang M, Fei W, Tang Y, Zhang X. Effect of the degradation performance on carbon tetrachloride by anaerobic co-metabolism under different external energy sources. CHEMOSPHERE 2022; 308:136262. [PMID: 36055587 DOI: 10.1016/j.chemosphere.2022.136262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Revised: 07/22/2022] [Accepted: 08/27/2022] [Indexed: 06/15/2023]
Abstract
In this research, a comprehensive study was carried out on the removal of carbon tetrachloride (CT) in the anaerobic co-metabolism (ACM) reactor. The experiments showed that when the hydraulic retention time (HRT) was 36 h, pH was 7, and influent CT was 2.5mg/L, the average removal efficiency reached 82.45 ± 2.56% in the glucose co-metabolism substrate reactor, exhibiting a dramatic excellent difference in reaction performance from the other two reactors (p < 0.05) and a favorable tolerance on the CT shock loading. The content of extracellular polymeric substances (EPS) and volatile fatty acids (VFA) demonstrated that glucose could supply more energy to protect the microorganisms, which was the appropriate external energy source. Moreover, microbial community structure and biostatistics analysis demonstrated that Pseudomonas was the most important dechlorination bacteria in ACM reactors, which might via dehalogenation process mediate the transformation of CT. The succession of methanogenic bacteria further demonstrated that CT degradation using co-digestion require to destroy hydrogenotrophic methane generation pathway and the external energy substances could make up the lack of hydrogen in the treatment of CT. The change of intermediate products hinted that anaerobic dechlorination process of CT in an ACM reactor was a sequential dechlorination process, and major transformation products measured were CF. Overall, this study has improved our understanding of the roles of CT degradation process in ACM reactors.
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Affiliation(s)
- Jia Wang
- MOK Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing, 100083, PR China; Industrial Technology Office, Ministry of Environmental Protection Center for Foreign Cooperation, Beijing, 100035, PR China
| | - Shuangrong Wu
- School of Civil Engineering, Tangshan University, Tangshan, 063000, PR China
| | - Qi Yang
- MOK Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing, 100083, PR China.
| | - Bingyang Liu
- MOK Key Laboratory of Groundwater Circulation and Environmental Evolution, China University of Geosciences (Beijing), Beijing, 100083, PR China
| | - Ming Yang
- Industrial Technology Office, Ministry of Environmental Protection Center for Foreign Cooperation, Beijing, 100035, PR China
| | - WeiLiang Fei
- Industrial Technology Office, Ministry of Environmental Protection Center for Foreign Cooperation, Beijing, 100035, PR China
| | - Yandong Tang
- Industrial Technology Office, Ministry of Environmental Protection Center for Foreign Cooperation, Beijing, 100035, PR China
| | - XiaoLan Zhang
- Industrial Technology Office, Ministry of Environmental Protection Center for Foreign Cooperation, Beijing, 100035, PR China
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3
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Prakash AA, Rajasekar A, Sarankumar RK, AlSalhi MS, Devanesan S, Aljaafreh MJ, Govarthanan M, Sayed SRM. Metagenomic analysis of microbial community and its role in bioelectrokinetic remediation of tannery contaminated soil. JOURNAL OF HAZARDOUS MATERIALS 2021; 412:125133. [PMID: 33524735 DOI: 10.1016/j.jhazmat.2021.125133] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Revised: 12/30/2020] [Accepted: 01/09/2021] [Indexed: 06/12/2023]
Abstract
Tanneries create a serious threat to the environment by generating a significant amount of toxic metal-containing solid waste. This study deals with the application of bio-electrokinetic remediation (Bio-EK) of tannery effluent contaminated soil (TECS). Metagenomes representing the TECS sample were sequenced using the Illumina HiSeq platform. The bioreduction of hexavalent chromium Cr(VI)to trivalent chromium Cr (III) was achieved by BIO-EK techniques. NGS-data (Next Generation Sequencing) analysis was revealed that Proteobacteria, Firmicutes, Bacteroidetes, Actinobacteria, and Planctomycetes were identified in the bio-electrokinetic system. Proteobacteria are responsible for the bioreduction of chromium hexavalent by the formation of FeS particles. The bio-generated FeS particles can be reduced the toxic chromium (VI) to non-toxic chromium (III) in soil. Simultaneously total chromium and organic content were significantly removed in BIO-EK (40 and 290 mg kg-1) when compared to control soil (182 and 240 mg kg-1). The presence of pollutant degrading microbes such as Desulfovibrio, Pseudomonas, Bacillus, Clostridium, Halanaerobium enhanced the bioreduction of the chromium during the electrokinetic remediation. This study can be claimed that the microbial cultures assisted electrokinetic remediation of total chromium, organic and iron in the tannery effluent contaminated soil was one of the suitable efficient techniques. In addition, the viability of the new combination technology developed (Electrokinetic + Bio) to treat low-permeability polluted soils was demonstrated.
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Affiliation(s)
- Arumugam Arul Prakash
- Environmental Molecular Microbiology Research Laboratory, Department of Biotechnology, Thiruvalluvar University, Serkadu, Vellore 632115, Tamilnadu, India
| | - Aruliah Rajasekar
- Environmental Molecular Microbiology Research Laboratory, Department of Biotechnology, Thiruvalluvar University, Serkadu, Vellore 632115, Tamilnadu, India
| | - Raja Kumaresan Sarankumar
- Environmental Molecular Microbiology Research Laboratory, Department of Biotechnology, Thiruvalluvar University, Serkadu, Vellore 632115, Tamilnadu, India
| | - Mohamad S AlSalhi
- Department of Physics and Astronomy, College of Science, King Saud University, P.O. Box -2455, Riyadh 11451, Kingdom of Saudi Arabia
| | - Sandhanasamy Devanesan
- Department of Physics and Astronomy, College of Science, King Saud University, P.O. Box -2455, Riyadh 11451, Kingdom of Saudi Arabia
| | - Mamduh J Aljaafreh
- Department of Physics and Astronomy, College of Science, King Saud University, P.O. Box -2455, Riyadh 11451, Kingdom of Saudi Arabia
| | - Muthusamy Govarthanan
- Department of Environmental Engineering, Kyungpook National University, Daegu, South Korea.
| | - Shaban R M Sayed
- Electron Microscope Unit, College of Science, King Saud University, Riyadh 11451, Kingdom of Saudi Arabia
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Hellal J, Joulian C, Urien C, Ferreira S, Denonfoux J, Hermon L, Vuilleumier S, Imfeld G. Chlorinated ethene biodegradation and associated bacterial taxa in multi-polluted groundwater: Insights from biomolecular markers and stable isotope analysis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 763:142950. [PMID: 33127155 DOI: 10.1016/j.scitotenv.2020.142950] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 10/01/2020] [Accepted: 10/06/2020] [Indexed: 06/11/2023]
Abstract
Chlorinated ethenes (CEs) are most problematic pollutants in groundwater. Dehalogenating bacteria, and in particular organohalide-respiring bacteria (OHRB), can transform PCE to ethene under anaerobic conditions, and thus contribute to bioremediation of contaminated sites. Current approaches to characterize in situ biodegradation of CEs include hydrochemical analyses, quantification of the abundance of key species (e.g. Dehalococcoides mccartyi) and dehalogenase genes (pceA, vcrA, bvcA and tceA) involved in different steps of organohalide respiration (OHR) by qPCR, and compound-specific isotope analysis (CSIA) of CEs. Here we combined these approaches with sequencing of 16S rRNA gene amplicons to consider both OHRB and bacterial taxa involved in CE transformation at a multi-contaminated site. Integrated analysis of hydrogeochemical characteristics, gene abundances and bacterial diversity shows that bacterial diversity and OHRB mainly correlated with hydrogeochemical conditions, suggesting that pollutant exposure acts as a central driver of bacterial diversity. CSIA, abundances of four reductive dehalogenase encoding genes and the prevalence of Dehalococcoides highlighted sustained PCE, DCE and VC degradation in several wells of the polluted plume. These results suggest that bacterial taxa associated with OHR play an essential role in natural attenuation of CEs, and that representatives of taxa including Dehalobacterium and Desulfosporosinus co-occur with Dehalococcoides. Overall, our study emphasizes the benefits of combining several approaches to evaluate the interplay between the dynamics of bacterial diversity in CE-polluted plumes and in situ degradation of CEs, and to contribute to a more robust assessment of natural attenuation at multi-polluted sites.
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Affiliation(s)
- Jennifer Hellal
- BRGM, Geomicrobiology and Environmental Monitoring Unit, FR-45060 Orléans, France.
| | - Catherine Joulian
- BRGM, Geomicrobiology and Environmental Monitoring Unit, FR-45060 Orléans, France
| | - Charlotte Urien
- Service Recherche, Développement et Innovation-Communautés Microbiennes, GenoScreen, Lille, France
| | - Stéphanie Ferreira
- Service Recherche, Développement et Innovation-Communautés Microbiennes, GenoScreen, Lille, France
| | - Jérémie Denonfoux
- Service Recherche, Développement et Innovation-Communautés Microbiennes, GenoScreen, Lille, France
| | - Louis Hermon
- BRGM, Geomicrobiology and Environmental Monitoring Unit, FR-45060 Orléans, France; Université de Strasbourg, CNRS, GMGM UMR 7156, Génétique Moléculaire, Génomique, Microbiologie, Strasbourg, France
| | - Stéphane Vuilleumier
- Université de Strasbourg, CNRS, GMGM UMR 7156, Génétique Moléculaire, Génomique, Microbiologie, Strasbourg, France
| | - Gwenaël Imfeld
- Université de Strasbourg, CNRS/EOST, LHyGeS UMR 7517, Laboratory of Hydrology and Geochemistry of Strasbourg, Strasbourg, France
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5
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Verma SK, Sharma PC. NGS-based characterization of microbial diversity and functional profiling of solid tannery waste metagenomes. Genomics 2020; 112:2903-2913. [PMID: 32272146 DOI: 10.1016/j.ygeno.2020.04.002] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Revised: 02/20/2020] [Accepted: 04/02/2020] [Indexed: 01/13/2023]
Abstract
Tanneries pose a serious threat to the environment by generating large amount of solid tannery waste (STW). Two metagenomes representing tannery waste dumpsites Jajmau (JJK) and Unnao (UNK) were sequenced using Illumina HiSeq platform. Microbial diversity analysis revealed domination of Proteobacteria, Firmicutes, Bacteroidetes, Actinobacteria, and Planctomycetes in both metagenomes. Presence of pollutant degrading microbes such as Bacillus, Clostridium, Halanaerobium and Pseudomonas strongly indicated their bioremediation ability. KEGG and SEED annotated main functional categories included carbohydrate metabolism, amino acids metabolism, and protein metabolism. KEGG displayed 5848 and 9633 proteases encoding ORFs compared to 5159 and 8044 ORFs displayed by SEED classification in JJK and UNK metagenomes, respectively. Abundantly present serine- and metallo-proteases belonging to Bacillaceae, Clostridiaceae, Xanthomonadaceae, Flavobacteriaceae and Chitinophagaceae families exhibited proteinaceous waste degrading ability of these metagenomes. Further structural and functional analysis of metagenome encoded enzymes may facilitate the discovery of novel proteases useful in bioremediation of STW.
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Affiliation(s)
- Sumit Kumar Verma
- University School of Biotechnology, Guru Gobind Singh Indraprastha University, New Delhi, India
| | - Prakash Chand Sharma
- University School of Biotechnology, Guru Gobind Singh Indraprastha University, New Delhi, India.
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Fernandez M, Pereira PP, Agostini E, González PS. How the bacterial community of a tannery effluent responds to bioaugmentation with the consortium SFC 500-1. Impact of environmental variables. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2019; 247:46-56. [PMID: 31229785 DOI: 10.1016/j.jenvman.2019.06.055] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Revised: 05/17/2019] [Accepted: 06/11/2019] [Indexed: 06/09/2023]
Abstract
Bioaugmentation with the consortium SFC 500-1 is a promising alternative to remediate wastewaters, such as tannery effluents. With the aim of assessing the changes produced in response to bioaugmentation, bacterial 16S rDNA genes were sequenced with Illumina MiSeq Platform. Additionally, bacterial and fungal groups were analyzed through standard culture dependent methods. The impact of diverse physico-chemical and microbiological parameters on the prokaryotic diversity was also evaluated throughout. Bacteroidetes, Firmicutes and Proteobacteria, represented together up to 91% of the total number of sequences obtained from the tannery effluent. Diversity decreased immediately after inoculation, due to an increase in the representation of the taxa to which the added consortium belongs. However, bioaugmentation produced no greater variations since only a 10% of unique operational taxonomic units were found in the inoculated treatment. An increase in the abundance of Myroides and a reduction in the representation of Proteiniclasticum and Halomonas were major observed variations. On the other hand, pH and dissolved oxygen constituted main environmental factors affecting the structure of the prokaryotic communities. In all treatments yeasts increased over time, to the detriment of filamentous fungi. Together, data from this report may contribute to the development of improved bioremediation strategies of industrial wastewaters.
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Affiliation(s)
- Marilina Fernandez
- Departamento de Biología Molecular, FCEFQyN, Universidad Nacional de Río Cuarto, 5800, Río Cuarto, Córdoba, Argentina; CONICET, UNRC, Instituto de Biotecnología Ambiental y Salud (INBIAS), Río Cuarto, Córdoba, Argentina.
| | - Paola P Pereira
- Departamento de Biología Molecular, FCEFQyN, Universidad Nacional de Río Cuarto, 5800, Río Cuarto, Córdoba, Argentina; CONICET, UNRC, Instituto de Biotecnología Ambiental y Salud (INBIAS), Río Cuarto, Córdoba, Argentina.
| | - Elizabeth Agostini
- Departamento de Biología Molecular, FCEFQyN, Universidad Nacional de Río Cuarto, 5800, Río Cuarto, Córdoba, Argentina; CONICET, UNRC, Instituto de Biotecnología Ambiental y Salud (INBIAS), Río Cuarto, Córdoba, Argentina.
| | - Paola S González
- Departamento de Biología Molecular, FCEFQyN, Universidad Nacional de Río Cuarto, 5800, Río Cuarto, Córdoba, Argentina; CONICET, UNRC, Instituto de Biotecnología Ambiental y Salud (INBIAS), Río Cuarto, Córdoba, Argentina.
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Varzaghani NB, Shokrollahzadeh S, Farazmand A. Biodegradation of tetrachloroethylene by a newly isolated aerobic Sphingopyxis ummariensis VR13. KOREAN J CHEM ENG 2019. [DOI: 10.1007/s11814-019-0303-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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8
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Wanner P, Parker BL, Chapman SW, Lima G, Gilmore A, Mack EE, Aravena R. Identification of Degradation Pathways of Chlorohydrocarbons in Saturated Low-Permeability Sediments Using Compound-Specific Isotope Analysis. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:7296-7306. [PMID: 29865795 DOI: 10.1021/acs.est.8b01173] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
This study aims to investigate whether compound-specific carbon isotope analysis (CSIA) can be used to differentiate the degradation pathways of chlorohydrocarbons in saturated low-permeability sediments. For that purpose, a site was selected, where a complex mixture of chlorohydrocarbons contaminated an aquifer-aquitard system. Almost 50 years after contaminant releases, high-resolution concentration, CSIA, and microbial profiles were determined. The CSIA profiles showed that in the aquitard cis-dichloroethene (cDCE), first considered as a degradation product of trichloroethene (TCE), is produced by the dichloroelimination of 1,1,2,2-tetrachloroethane (TeCA). In contrast, TeCA degrades to TCE via dehydrohalogenation in the aquifer, indicating that the aquifer-aquitard interface separates two different degradation pathways for TeCA. Moreover, the CSIA profiles showed that chloroform (CF) is degraded to dichloromethane (DCM) via hydrogenolysis in the aquitard and, to a minor degree, produced by the degradation of carbon tetrachloride (CT). Several microorganisms capable of degrading chlorohydrocarbons were detected in the aquitard, suggesting that aquitard degradation is microbially mediated. Furthermore, numerical simulations reproduced the aquitard concentration and CSIA profiles well, which allowed the determination of degradation rates for each transformation pathway. This improves the prediction of contaminant fate in the aquitard and potential magnitude of impacts on the adjacent aquifer due to back-diffusion.
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Affiliation(s)
- Philipp Wanner
- G360 Institute for Groundwater Research, College of Engineering and Physical Sciences , University of Guelph , 50 Stone Road East , Guelph , Ontario , Canada N1G 2W1
| | - Beth L Parker
- G360 Institute for Groundwater Research, College of Engineering and Physical Sciences , University of Guelph , 50 Stone Road East , Guelph , Ontario , Canada N1G 2W1
| | - Steven W Chapman
- G360 Institute for Groundwater Research, College of Engineering and Physical Sciences , University of Guelph , 50 Stone Road East , Guelph , Ontario , Canada N1G 2W1
| | - Glaucia Lima
- G360 Institute for Groundwater Research, College of Engineering and Physical Sciences , University of Guelph , 50 Stone Road East , Guelph , Ontario , Canada N1G 2W1
- Department of Civil Engineering , University of Toronto , 35 Saint George Street , Toronto , Ontario , Canada , M5S 1A4
| | - Adam Gilmore
- G360 Institute for Groundwater Research, College of Engineering and Physical Sciences , University of Guelph , 50 Stone Road East , Guelph , Ontario , Canada N1G 2W1
- Regional Municipality of Halton , 1151 Bronte Road , Oakville , Ontario , Canada L6M 3L1
| | - E Erin Mack
- DuPont , 974 Centre Road , Wilmington , Delaware 19805 , United States
| | - Ramon Aravena
- G360 Institute for Groundwater Research, College of Engineering and Physical Sciences , University of Guelph , 50 Stone Road East , Guelph , Ontario , Canada N1G 2W1
- Department of Earth and Environmental Sciences , University of Waterloo , 200 University Avenue West , Waterloo , Ontario , Canada N2L 3GI
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Leitner S, Reichenauer TG, Watzinger A. Impact of sorption processes on PCE concentrations in organohalide-respiring aquifer sediment samples. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 615:1061-1069. [PMID: 29751409 DOI: 10.1016/j.scitotenv.2017.09.225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Revised: 09/20/2017] [Accepted: 09/21/2017] [Indexed: 06/08/2023]
Abstract
The evaluation of groundwater contaminant e.g. tetrachloroethene (PCE) degradation processes requires complete quantification of and pathway analysis of the groundwater contaminant under investigation. For example the reduction of PCE concentrations in the groundwater by unknown dissolution and/or sorption processes will impede interpretation of the fate and behaviour of such contaminants. In the present study PCE dissolution and sorption processes during anaerobic microbial degradation of chlorinated ethenes were investigated. For this purpose, microcosms were prepared using sediment samples from a PCE-contaminated aquifer, which in previous studies had demonstrated anaerobic organohalide respiration of PCE. Solid/water distribution coefficients (kd) of PCE were determined and validated by loss-on-ignition (LOI) and PCE sorption experiments. The determined kd magnitudes indicated methodological congruency, yielding values for sediment samples within a range of 1.15±0.02 to 5.93±0.34L·kg-1. The microcosm experiment showed lower PCE concentrations than expected, based on spiked PCE and observed anaerobic microbial degradation processes. Nevertheless the amount of PCE spike added was completely recovered albeit in the form of lower chlorinated metabolites. A delay due to dissolution processes was not responsible for this phenomenon. Sorption to sediments could only partially explain the reduction of PCE in the water phase. Accordingly, the results point to reversible sorption processes of PCE, possibly onto bacterial cell compartments and/or exopolymeric substances.
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Affiliation(s)
- Simon Leitner
- AIT Austrian Institute of Technology GmbH, Center for Energy, Environmental Resources and Technologies, Konrad-Lorenz-Straße 24, 3430 Tulln, Austria
| | - Thomas G Reichenauer
- AIT Austrian Institute of Technology GmbH, Center for Energy, Environmental Resources and Technologies, Konrad-Lorenz-Straße 24, 3430 Tulln, Austria
| | - Andrea Watzinger
- AIT Austrian Institute of Technology GmbH, Center for Energy, Environmental Resources and Technologies, Konrad-Lorenz-Straße 24, 3430 Tulln, Austria.
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Leitner S, Berger H, Gorfer M, Reichenauer TG, Watzinger A. Isotopic effects of PCE induced by organohalide-respiring bacteria. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:24803-24815. [PMID: 28913587 DOI: 10.1007/s11356-017-0075-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Accepted: 09/01/2017] [Indexed: 06/07/2023]
Abstract
Reductive dechlorination performed by organohalide-respiring bacteria (OHRB) enables the complete detoxification of certain emerging groundwater pollutants such as perchloroethene (PCE). Environmental samples from a contaminated site incubated in a lab-scale microcosm (MC) study enable documentation of such reductive dechlorination processes. As compound-specific isotope analysis is used to monitor PCE degradation processes, nucleic acid analysis-like 16S-rDNA analysis-can be used to determine the key OHRB that are present. This study applied both methods to laboratory MCs prepared from environmental samples to investigate OHRB-specific isotope enrichment at PCE dechlorination. This method linkage can enhance the understanding of isotope enrichment patterns of distinct OHRB, which further contribute to more accurate evaluation, characterisation and prospection of natural attenuation processes. Results identified three known OHRB genera (Dehalogenimonas, Desulfuromonas, Geobacter) in diverse abundance within MCs. One species of Dehalogenimonas was potentially involved in complete reductive dechlorination of PCE to ethene. Furthermore, the isotopic effects of PCE degradation were clustered and two isotope enrichment factors (ε) (- 11.6‰, - 1.7‰) were obtained. Notably, ε values were independent of degradation rates and kinetics, but did reflect the genera of the dechlorinating OHRB.
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Affiliation(s)
- Simon Leitner
- AIT Austrian Institute of Technology GmbH, Energy Department, Environmental Resources & Technologies, Konrad-Lorenz-Str. 24, 3430, Tulln, Austria
| | - Harald Berger
- AIT Austrian Institute of Technology GmbH, Health & Environment Department, Bioresources, Konrad-Lorenz-Str. 24, 3430, Tulln, Austria
| | - Markus Gorfer
- AIT Austrian Institute of Technology GmbH, Health & Environment Department, Bioresources, Konrad-Lorenz-Str. 24, 3430, Tulln, Austria
| | - Thomas G Reichenauer
- AIT Austrian Institute of Technology GmbH, Energy Department, Environmental Resources & Technologies, Konrad-Lorenz-Str. 24, 3430, Tulln, Austria
| | - Andrea Watzinger
- AIT Austrian Institute of Technology GmbH, Energy Department, Environmental Resources & Technologies, Konrad-Lorenz-Str. 24, 3430, Tulln, Austria.
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11
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Liu Y, Zhou A, Gan Y, Li X. Effects of inorganic anions on carbon isotope fractionation during Fenton-like degradation of trichloroethene. JOURNAL OF HAZARDOUS MATERIALS 2016; 308:187-191. [PMID: 26835895 DOI: 10.1016/j.jhazmat.2016.01.044] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2015] [Revised: 01/11/2016] [Accepted: 01/18/2016] [Indexed: 06/05/2023]
Abstract
Understanding the magnitude and variability in isotope fractionation with respect to specific processes is crucial to the application of stable isotopic analysis as a tool to infer and quantify transformation processes. The variability of carbon isotope fractionation during Fenton-like degradation of trichloroethene (TCE) in the presence of different inorganic ions (nitrate, sulfate, and chloride), was investigated to evaluate the potential effects of inorganic anions on carbon isotope enrichment factor (ε value). A comparison of ε values obtained in deionized water, nitrate solution, and sulfate solution demonstrated that the ε values were identical and not affected by the presence of nitrate and sulfate. In the presence of chloride, however, the ε values (ranging from -6.3±0.8 to 10±1.3‰) were variable and depended on the chloride concentration, indicating that chloride could significantly affect carbon isotope fractionation during Fenton-like degradation of TCE. Thus, caution should be exercised in selecting appropriate ε values for the field application of stable isotope analysis, as various chloride concentrations may be present due to naturally present or introduced with pH adjustment and iron salts during Fenton-like remediation. Furthermore, the effects of chloride on carbon isotope fractionation may be able to provide new insights about reaction mechanisms of Fenton-like processes.
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Affiliation(s)
- Yunde Liu
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China; School of Environmental Studies, China University of Geosciences, Wuhan 430074, China; Laboratory of Basin Hydrology and Wetland Eco-restoration, China University of Geosciences, Wuhan 430074, China
| | - Aiguo Zhou
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China; School of Environmental Studies, China University of Geosciences, Wuhan 430074, China.
| | - Yiqun Gan
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China; School of Environmental Studies, China University of Geosciences, Wuhan 430074, China
| | - Xiaoqian Li
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China; School of Environmental Studies, China University of Geosciences, Wuhan 430074, China
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Liu Y, Zhou A, Gan Y, Li X. Variability in carbon isotope fractionation of trichloroethene during degradation by persulfate activated with zero-valent iron: Effects of inorganic anions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2016; 548-549:1-5. [PMID: 26784392 DOI: 10.1016/j.scitotenv.2016.01.011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2015] [Revised: 01/03/2016] [Accepted: 01/03/2016] [Indexed: 06/05/2023]
Abstract
Stable carbon isotope analysis has the potential to be used for assessing the performance of in situ remediation of organic contaminants. Successful application of this isotope technique requires understanding the magnitude and variability in carbon isotope fractionation associated with the reactions under consideration. This study investigated the influence of inorganic anions (sulfate, bicarbonate, and chloride) on carbon isotope fractionation of trichloroethene (TCE) during its degradation by persulfate activated with zero-valent iron. The results demonstrated that the significant carbon isotope fractionation (enrichment factors ε ranging from -3.4±0.3 to -4.3±0.3‰) was independent on the zero-iron dosage, sulfate concentration, and bicarbonate concentration. However, the ε values (ranging from -7.0±0.4 to -13.6±1.2‰) were dependent on the chloride concentration, indicating that chloride could significantly affect carbon isotope fractionation during TCE degradation by persulfate activated with zero-valent iron. The dependence of ε values on chloride concentration, indicated that TCE degradation mechanisms may be different from the degradation mechanism caused by sulfate radical (SO4(-)). Ignoring the effect of chloride on ε value may cause numerous uncertainties in quantitative assessment of the performance of the in situ chemical oxidation (ISCO).
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Affiliation(s)
- Yunde Liu
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China; School of Environmental Studies, China University of Geosciences, Wuhan 430074, China
| | - Aiguo Zhou
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China; School of Environmental Studies, China University of Geosciences, Wuhan 430074, China.
| | - Yiqun Gan
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China; School of Environmental Studies, China University of Geosciences, Wuhan 430074, China
| | - Xiaoqian Li
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China; School of Environmental Studies, China University of Geosciences, Wuhan 430074, China
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Kumar BL, Gopal DVRS. Effective role of indigenous microorganisms for sustainable environment. 3 Biotech 2015; 5:867-876. [PMID: 28324402 PMCID: PMC4624139 DOI: 10.1007/s13205-015-0293-6] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2015] [Accepted: 03/06/2015] [Indexed: 12/23/2022] Open
Abstract
Environmental protection has the foremost importance in the present day life of mankind. Scientists have been researching for technologies naturally available for enhancement of agriculture, management of agricultural waste, etc. Indigenous Microorganisms (IMO’s)-based technology is one such great technology which is applied in the eastern part of world for the extraction of minerals, enhancement of agriculture and waste management. Indigenous microorganisms are a group of innate microbial consortium that inhabits the soil and the surfaces of all living things inside and outside which have the potentiality in biodegradation, bioleaching, biocomposting, nitrogen fixation, improving soil fertility and as well in the production of plant growth hormones. Without these microbes, the life will be wretched and melancholic on this lively planet for the survival of human race. That is why, environmental restoration and safeguarding target via the indigenous microbes in a native manner to turn out the good-for-nothing and useless waste into productive bioresources is the primary concern of this review. Based on the collection sites, the process of collection and isolation methods are different as they may vary from place to place. Ultimately, in this way to a meaningful and significant extent, we can bridge the gap between the horrifying environmental distress and the hostile activities that have been constantly provoked by human kind—by getting these indigenous microorganisms into action.
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Desta AF, Assefa F, Leta S, Stomeo F, Wamalwa M, Njahira M, Appolinaire D. Microbial community structure and diversity in an integrated system of anaerobic-aerobic reactors and a constructed wetland for the treatment of tannery wastewater in Modjo, Ethiopia. PLoS One 2014; 9:e115576. [PMID: 25541981 PMCID: PMC4277355 DOI: 10.1371/journal.pone.0115576] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2014] [Accepted: 11/29/2014] [Indexed: 11/18/2022] Open
Abstract
A culture-independent approach was used to elucidate the microbial diversity and structure in the anaerobic-aerobic reactors integrated with a constructed wetland for the treatment of tannery wastewater in Modjo town, Ethiopia. The system has been running with removal efficiencies ranging from 94%-96% for COD, 91%-100% for SO4(2-) and S(2-), 92%-94% for BOD, 56%-82% for total Nitrogen and 2%-90% for NH3-N. 16S rRNA gene clone libraries were constructed and microbial community assemblies were determined by analysis of a total of 801 unique clone sequences from all the sites. Operational Taxonomic Unit (OTU)--based analysis of the sequences revealed highly diverse communities in each of the reactors and the constructed wetland. A total of 32 phylotypes were identified with the dominant members affiliated to Clostridia (33%), Betaproteobacteria (10%), Bacteroidia (10%), Deltaproteobacteria (9%) and Gammaproteobacteria (6%). Sequences affiliated to the class Clostridia were the most abundant across all sites. The 801 sequences were assigned to 255 OTUs, of which 3 OTUs were shared among the clone libraries from all sites. The shared OTUs comprised 80 sequences belonging to Clostridiales Family XIII Incertae Sedis, Bacteroidetes and unclassified bacterial group. Significantly different communities were harbored by the anaerobic, aerobic and rhizosphere sites of the constructed wetland. Numerous representative genera of the dominant bacterial classes obtained from the different sample sites of the integrated system have been implicated in the removal of various carbon- containing pollutants of natural and synthetic origins. To our knowledge, this is the first report of microbial community structure in tannery wastewater treatment plant from Ethiopia.
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Affiliation(s)
- Adey Feleke Desta
- Institute of Biotechnology, Addis Ababa University, Addis Ababa, Ethiopia
| | - Fassil Assefa
- Institute of Biotechnology, Addis Ababa University, Addis Ababa, Ethiopia
| | - Seyoum Leta
- Centre for Environmental Science, College of Natural Sciences, Addis Ababa University, Addis Ababa, Ethiopia
| | - Francesca Stomeo
- Biosciences eastern and central Africa- International Livestock Research Institute (BecA-ILRI) Hub, Nairobi, Kenya
| | - Mark Wamalwa
- Biosciences eastern and central Africa- International Livestock Research Institute (BecA-ILRI) Hub, Nairobi, Kenya
| | - Moses Njahira
- Biosciences eastern and central Africa- International Livestock Research Institute (BecA-ILRI) Hub, Nairobi, Kenya
| | - Djikeng Appolinaire
- Biosciences eastern and central Africa- International Livestock Research Institute (BecA-ILRI) Hub, Nairobi, Kenya
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15
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Biostimulation of indigenous communities for the successful dechlorination of tetrachloroethene (perchloroethylene)-contaminated groundwater. Biotechnol Lett 2013; 36:75-83. [DOI: 10.1007/s10529-013-1369-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2013] [Accepted: 09/05/2013] [Indexed: 11/26/2022]
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Patil SS, Adetutu EM, Rochow J, Mitchell JG, Ball AS. Sustainable remediation: electrochemically assisted microbial dechlorination of tetrachloroethene-contaminated groundwater. Microb Biotechnol 2013; 7:54-63. [PMID: 24119162 PMCID: PMC3896933 DOI: 10.1111/1751-7915.12089] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2013] [Revised: 07/29/2013] [Accepted: 08/18/2013] [Indexed: 11/28/2022] Open
Abstract
Microbial electric systems (MESs) hold significant promise for the sustainable remediation of chlorinated solvents such as tetrachlorethene (perchloroethylene, PCE). Although the bio-electrochemical potential of some specific bacterial species such as Dehalcoccoides and Geobacteraceae have been exploited, this ability in other undefined microorganisms has not been extensively assessed. Hence, the focus of this study was to investigate indigenous and potentially bio-electrochemically active microorganisms in PCE-contaminated groundwater. Lab-scale MESs were fed with acetate and carbon electrode/PCE as electron donors and acceptors, respectively, under biostimulation (BS) and BS-bioaugmentation (BS-BA) regimes. Molecular analysis of the indigenous groundwater community identified mainly Spirochaetes, Firmicutes, Bacteroidetes, and γ and δ-Proteobacteria. Environmental scanning electron photomicrographs of the anode surfaces showed extensive indigenous microbial colonization under both regimes. This colonization and BS resulted in 100% dechlorination in both treatments with complete dechlorination occurring 4 weeks earlier in BS-BA samples and up to 11.5 μA of current being generated. The indigenous non-Dehalococcoides community was found to contribute significantly to electron transfer with ∼61% of the current generated due to their activities. This study therefore shows the potential of the indigenous non-Dehalococcoides bacterial community in bio-electrochemically reducing PCE that could prove to be a cost-effective and sustainable bioremediation practice.
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Affiliation(s)
- Sayali S Patil
- School of Biological Sciences, Flinders University of South Australia, Adelaide, SA, 5042, Australia; Department of Applied Biosciences, Royal Melbourne Institute of Technology, Bundoora, Vic., 3083, Australia
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Wang S, Huang L, Gan L, Quan X, Li N, Chen G, Lu L, Xing D, Yang F. Combined effects of enrichment procedure and non-fermentable or fermentable co-substrate on performance and bacterial community for pentachlorophenol degradation in microbial fuel cells. BIORESOURCE TECHNOLOGY 2012; 120:120-126. [PMID: 22784962 DOI: 10.1016/j.biortech.2012.06.022] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2012] [Revised: 06/05/2012] [Accepted: 06/07/2012] [Indexed: 06/01/2023]
Abstract
Combined effects of enrichment procedure and non-fermentable acetate or fermentable glucose on system performance and bacterial community for pentachlorophenol (PCP) degradation in microbial fuel cells (MFCs) were determined in this study. Co-substrate and PCP were added into MFCs either simultaneously or sequentially. Simultaneous addition with glucose (simultaneous-glucose) achieved the shortest acclimation time and the most endurance to heavy PCP shock loads. Species of Alphaproteobacteria (simultaneous-acetate, 33.9%; sequential-acetate, 31.3%), Gammaproteobacteria (simultaneous-glucose, 44.1%) and Firmicutes (sequential-glucose, 31.8%) dominated the complex systems. The genus Sedimentibacter was found to exist in all the cases whereas Spirochaetes were merely developed in simultaneous-acetate and simultaneous-glucose. While Epsilonproteobacteria were only absent from sequential-acetate, simultaneous-glucose benefited to the evolution of Lentisphaerae. These results demonstrate simultaneous-glucose is a strategy for efficient system performance and the microbiological evidence can contribute to improving understanding of and optimizing PCP degradation in MFCs.
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Affiliation(s)
- Shanshan Wang
- Key Laboratory of Industrial Ecology and Environmental Engineering, Ministry of Education (MOE), School of Environmental Science and Technology, Dalian University of Technology, Dalian 116024, China
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18
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Li H, Zhang W, Li L, Liu YD, Lin KF, Lu SG, Mu BZ, Du XM, Lu Q, Zhang Q, Shen TT, Li BZ, Zhao LM, Li YY. Effects of 1,1,1-trichloroethane on enzymatic activity and bacterial community in anaerobic microcosm form sequencing batch reactors. ECOTOXICOLOGY (LONDON, ENGLAND) 2012; 21:1426-1435. [PMID: 22543958 DOI: 10.1007/s10646-012-0896-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 02/15/2012] [Indexed: 05/31/2023]
Abstract
1,1,1-Trichloroethane (TCA), a major organic and groundwater contaminant, has very strong toxic effects on humans, plants and microorganisms. Effects of TCA on enzymatic activity and microbial diversity were investigated in the anaerobic sequencing batch reactor (ASBR) under methanogenic, nitrate-reducing, sulfate-reducing and benzene/toluene degrading conditions. The activities of three enzymes (lactate dehydrogenase, phosphatase and protease) were significantly decreased in the presence of 5 mg/L TCA. Within these three affected enzymes, phosphatase activity may serve as a noteworthy marker of bacterial toxicity. The activity of phosphatase was 0.2 U/L in methanogenic conditions with 5 mg/L TCA, which was 99% lower than the controls, and the enzyme activity was 18.6 U/L in methanogenic conditions with 1 mg/L TCA, which was 7% lower than the controls. DGGE profiles showed that TCA altered the bacterial community distribution and diversity obviously during the 21 day of TCA exposure. The enzyme activities decreased second lowest but TCA degrading strains Clostridium sp. DhR-2/LM-G01, Bacterial clone DCE25 and Bacterial clone DPHB06 were enriched in the methanogenic ASBR amended TCA.
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Affiliation(s)
- Hui Li
- Shanghai Key Laboratory of Functional Materials Chemistry, East China University of Science and Technology, Shanghai 200237, People's Republic of China
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Qiu M, Chen X, Deng D, Guo J, Sun G, Mai B, Xu M. Effects of electron donors on anaerobic microbial debromination of polybrominated diphenyl ethers (PBDEs). Biodegradation 2011; 23:351-61. [PMID: 21910024 DOI: 10.1007/s10532-011-9514-9] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2011] [Accepted: 08/30/2011] [Indexed: 10/17/2022]
Abstract
Polybrominated diphenyl ethers (PBDEs) are a class of widely used flame retardants that have been highly accumulated in sediments. It is reported that microorganisms play an important role in the reductive debromination of PBDEs in anaerobic sediments. However, little is known about the effects of electron donors on the microbial community structure and their debromination capacity in PBDE transformation. In this study, alternate carbon substrates were used as electron donors to enrich the PBDE-debrominating microbial consortia to evaluate the effects of electron donors on PBDE microbial debromination. Decabromodiphenyl ether (BDE-209) was found to be the dominant (more than 50%) PBDEs congener in all consortia, and the percentage of BDE-209 was deceased by 12% (methanol), 11% (ethanol), 8% (acetate), 9% (lactate), 5% (pyruvate), and 11% (no electron donors), while the relative abundances of most lesser-brominated PBDEs increased after 90-day incubation compared to the initial profile of PBDEs. Substantial shifts in the microbial community structure among different amendments were observed based on denaturing gradient gel electrophoresis results. Pseudomonas spp. were identified to be the predominant organisms and the abundances of Band R, which was associated with Pseudomonas sp. SCSWA09, was well correlated with the biodegradation rate of BDE-209. Finally, the microbial community structure was highly correlated with the concentration of deca-BDE, octa-BDE and total nitrogen. These results provide insights into in situ bioremediation of environments contaminated by PBDEs and our understanding of microbial ecology associated with PBDE-debromination.
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Affiliation(s)
- Mengde Qiu
- State Key Laboratory of Applied Microbiology (Ministry-Guangdong Province Jointly Breeding Base), South China, Guangzhou, 510070, China
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