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Su X, Zhang M, Yang G, Cui X, Yuan X, Du L, Pei Y. Bioinformatics and machine learning approaches reveal key genes and underlying molecular mechanisms of atherosclerosis: A review. Medicine (Baltimore) 2024; 103:e38744. [PMID: 39093811 PMCID: PMC11296484 DOI: 10.1097/md.0000000000038744] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 06/07/2024] [Indexed: 08/04/2024] Open
Abstract
Atherosclerosis (AS) causes thickening and hardening of the arterial wall due to accumulation of extracellular matrix, cholesterol, and cells. In this study, we used comprehensive bioinformatics tools and machine learning approaches to explore key genes and molecular network mechanisms underlying AS in multiple data sets. Next, we analyzed the correlation between AS and immune fine cell infiltration, and finally performed drug prediction for the disease. We downloaded GSE20129 and GSE90074 datasets from the Gene expression Omnibus database, then employed the Cell-type Identification By Estimating Relative Subsets Of RNA Transcripts algorithm to analyze 22 immune cells. To enrich for functional characteristics, the black module correlated most strongly with T cells was screened with weighted gene co-expression networks analysis. Functional enrichment analysis revealed that the genes were mainly enriched in cell adhesion and T-cell-related pathways, as well as NF-κ B signaling. We employed the Lasso regression and random forest algorithms to screen out 5 intersection genes (CCDC106, RASL11A, RIC3, SPON1, and TMEM144). Pathway analysis in gene set variation analysis and gene set enrichment analysis revealed that the key genes were mainly enriched in inflammation, and immunity, among others. The selected key genes were analyzed by single-cell RNA sequencing technology. We also analyzed differential expression between these 5 key genes and those involved in iron death. We found that ferroptosis genes ACSL4, CBS, FTH1 and TFRC were differentially expressed between AS and the control groups, RIC3 and FTH1 were significantly negatively correlated, whereas SPON1 and VDAC3 were significantly positively correlated. Finally, we used the Connectivity Map database for drug prediction. These results provide new insights into AS genetic regulation.
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Affiliation(s)
- Xiaoxue Su
- Vascular Surgery Department of Weifang Yidu Central Hospital, Weifang, Shandong, China
| | - Meng Zhang
- Vascular Surgery Department of Weifang Yidu Central Hospital, Weifang, Shandong, China
| | - Guinan Yang
- Department of Urology, People’s Hospital of Qingdao West Coast New Area, Qingdao, Shandong, China
| | - Xuebin Cui
- Vascular Surgery Department of Weifang Yidu Central Hospital, Weifang, Shandong, China
| | | | | | - Yuanmin Pei
- Vascular Surgery Department of Weifang Yidu Central Hospital, Weifang, Shandong, China
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Irastorza-Valera L, Soria-Gómez E, Benitez JM, Montáns FJ, Saucedo-Mora L. Review of the Brain's Behaviour after Injury and Disease for Its Application in an Agent-Based Model (ABM). Biomimetics (Basel) 2024; 9:362. [PMID: 38921242 PMCID: PMC11202129 DOI: 10.3390/biomimetics9060362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Revised: 05/28/2024] [Accepted: 06/05/2024] [Indexed: 06/27/2024] Open
Abstract
The brain is the most complex organ in the human body and, as such, its study entails great challenges (methodological, theoretical, etc.). Nonetheless, there is a remarkable amount of studies about the consequences of pathological conditions on its development and functioning. This bibliographic review aims to cover mostly findings related to changes in the physical distribution of neurons and their connections-the connectome-both structural and functional, as well as their modelling approaches. It does not intend to offer an extensive description of all conditions affecting the brain; rather, it presents the most common ones. Thus, here, we highlight the need for accurate brain modelling that can subsequently be used to understand brain function and be applied to diagnose, track, and simulate treatments for the most prevalent pathologies affecting the brain.
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Affiliation(s)
- Luis Irastorza-Valera
- E.T.S. de Ingeniería Aeronáutica y del Espacio, Universidad Politécnica de Madrid, Pza. Cardenal Cisneros 3, 28040 Madrid, Spain; (L.I.-V.); (J.M.B.); (F.J.M.)
- PIMM Laboratory, ENSAM–Arts et Métiers ParisTech, 151 Bd de l’Hôpital, 75013 Paris, France
| | - Edgar Soria-Gómez
- Achúcarro Basque Center for Neuroscience, Barrio Sarriena, s/n, 48940 Leioa, Spain;
- Ikerbasque, Basque Foundation for Science, Plaza Euskadi, 5, 48009 Bilbao, Spain
- Department of Neurosciences, University of the Basque Country UPV/EHU, Barrio Sarriena, s/n, 48940 Leioa, Spain
| | - José María Benitez
- E.T.S. de Ingeniería Aeronáutica y del Espacio, Universidad Politécnica de Madrid, Pza. Cardenal Cisneros 3, 28040 Madrid, Spain; (L.I.-V.); (J.M.B.); (F.J.M.)
| | - Francisco J. Montáns
- E.T.S. de Ingeniería Aeronáutica y del Espacio, Universidad Politécnica de Madrid, Pza. Cardenal Cisneros 3, 28040 Madrid, Spain; (L.I.-V.); (J.M.B.); (F.J.M.)
- Department of Mechanical and Aerospace Engineering, Herbert Wertheim College of Engineering, University of Florida, Gainesville, FL 32611, USA
| | - Luis Saucedo-Mora
- E.T.S. de Ingeniería Aeronáutica y del Espacio, Universidad Politécnica de Madrid, Pza. Cardenal Cisneros 3, 28040 Madrid, Spain; (L.I.-V.); (J.M.B.); (F.J.M.)
- Department of Materials, University of Oxford, Parks Road, Oxford OX1 3PJ, UK
- Department of Nuclear Science and Engineering, Massachusetts Institute of Technology (MIT), 77 Massachusetts Ave, Cambridge, MA 02139, USA
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3
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Zhang R, Ge Y, Xia L, Cheng Y. Bibliometric Analysis of Development Trends and Research Hotspots in the Study of Data Mining in Nursing Based on CiteSpace. J Multidiscip Healthc 2024; 17:1561-1575. [PMID: 38617080 PMCID: PMC11016257 DOI: 10.2147/jmdh.s459079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Accepted: 04/04/2024] [Indexed: 04/16/2024] Open
Abstract
Backgrounds With the advent of the big data era, hospital information systems and mobile care systems, among others, generate massive amounts of medical data. Data mining, as a powerful information processing technology, can discover non-obvious information by processing large-scale data and analyzing them in multiple dimensions. How to find the effective information hidden in the database and apply it to nursing clinical practice has received more and more attention from nursing researchers. Aim To look over the articles on data mining in nursing, compiled research status, identified hotspots, highlighted research trends, and offer recommendations for how data mining technology might be used in the nursing area going forward. Methods Data mining in nursing publications published between 2002 and 2023 were taken from the Web of Science Core Collection. CiteSpace was utilized for reviewing the number of articles, countries/regions, institutions, journals, authors, and keywords. Results According to the findings, the pace of data mining in nursing progress is not encouraging. Nursing data mining research is dominated by the United States and China. However, no consistent core group of writers or organizations has emerged in the field of nursing data mining. Studies on data mining in nursing have been increasingly gradually conducted in the 21st century, but the overall number is not large. Institution of Columbia University, journal of Cin-computers Informatics Nursing, author Diana J Wilkie, Muhammad Kamran Lodhi, Yingwei Yao are most influential in nursing data mining research. Nursing data mining researchers are currently focusing on electronic health records, text mining, machine learning, and natural language processing. Future research themes in data mining in nursing most include nursing informatics and clinical care quality enhancement. Conclusion Research data shows that data mining gives more perspectives for the growth of the nursing discipline and encourages the discipline's development, but it also introduces a slew of new issues that need researchers to address.
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Affiliation(s)
- Rui Zhang
- Department of Nursing, Huadong Hospital Affiliated to Fudan University, Shanghai, 200040, People’s Republic of China
- Department of Nursing, Fudan University, Shanghai, 200433, People’s Republic of China
| | - Yingying Ge
- Yijiangmen Community Health Service Center, Nanjing, 210009, People’s Republic of China
| | - Lu Xia
- Day Surgery Unit, Huadong Hospital Affiliated to Fudan University, Shanghai, 200040, People’s Republic of China
| | - Yun Cheng
- School of Medicine, The Chinese University of Hong Kong, Shenzhen, 518172, People’s Republic of China
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Chou WY, Cheng JH, Lien YJ, Huang TH, Ho WH, Chou PPH. Treatment Algorithm for the Resorption of Calcific Tendinitis Using Extracorporeal Shockwave Therapy: A Data Mining Study. Orthop J Sports Med 2024; 12:23259671241231609. [PMID: 38449692 PMCID: PMC10916478 DOI: 10.1177/23259671241231609] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/15/2023] [Accepted: 08/23/2023] [Indexed: 03/08/2024] Open
Abstract
Background Although evidence indicates that extracorporeal shockwave therapy (ESWT) is effective in treating calcifying shoulder tendinitis, incomplete resorption and dissatisfactory results are still reported in many cases. Data mining techniques have been applied in health care in the past decade to predict outcomes of disease and treatment. Purpose To identify the ideal data mining technique for the prediction of ESWT-induced shoulder calcification resorption and the most accurate algorithm for use in the clinical setting. Study Design Case-control study. Methods Patients with painful calcified shoulder tendinitis treated by ESWT were enrolled. Seven clinical factors related to shoulder calcification were adopted as the input attributes: sex, age, side affected, symptom duration, pretreatment Constant-Murley score, and calcification size and type. The 5 data mining techniques assessed were multilayer perceptron (neural network), naïve Bayes, sequential minimal optimization, logistic regression, and the J48 decision tree classifier. Results A total of 248 patients with calcified shoulder tendinitis were enrolled in this study. Shorter symptom duration yielded the highest gain ratio (0.374), followed by smaller calcification size (0.336) and calcification type (0.253). With the J48 decision tree method, the accuracy of 3 input attributes was 89.5% by 10-fold cross-validation, indicating satisfactory accuracy. A treatment algorithm using the J48 decision tree indicated that a symptom duration of ≤10 months was the most positive indicator of calcification resorption, followed by a calcification size of ≤10.82 mm. Conclusion The J48 decision tree method demonstrated the highest precision and accuracy in the prediction of shoulder calcification resorption by ESWT. A symptom duration of ≤10 months or calcification size of ≤10.82 mm represented the clinical scenarios most likely to show resorption after ESWT.
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Affiliation(s)
- Wen-Yi Chou
- Doctoral Degree Program in Biomedical Engineering, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan
- Department of Orthopedic Surgery, Kaohsiung Chang Gung Memorial Hospital and Chang Gung University College of Medicine, Kaohsiung, Taiwan
- Department of Leisure and Sport Management, Cheng Shiu University, Kaohsiung, Taiwan
| | - Jai-Hong Cheng
- Center for Shockwave Medicine and Tissue Engineering, Department of Medical Research, Kaohsiung Chang Gung Memorial Hospital and Chang Gung University College of Medicine, Kaohsiung, Taiwan
| | - Yu-Jui Lien
- Department of Healthcare Administration and Medical Informatics, Kaohsiung Medical University, Kaohsiung, Taiwan
| | - Tian-Hsiang Huang
- Department of Computer Science and Information Engineering, National Penghu University of Science and Technology, Penghu, Taiwan
| | - Wen-Hsien Ho
- Department of Healthcare Administration and Medical Informatics, Kaohsiung Medical University, Kaohsiung, Taiwan
- College of Professional Studies, National Pingtung University of Science and Technology, Pingtung, Taiwan
| | - Paul Pei-Hsi Chou
- Department of Sports Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan
- Division of Sports Medicine, Department of Orthopaedic Surgery, Kaohsiung Medical University Hospital, Kaohsiung, Taiwan
- Department of Orthopaedics, School of Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan
- Department of Orthopaedic Surgery, Kaohsiung Municipal Hsiao-Kang Hospital, Kaohsiung, Taiwan
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Sharma D, Singh J, Shah B, Ali F, AlZubi AA, AlZubi MA. Public mental health through social media in the post COVID-19 era. Front Public Health 2023; 11:1323922. [PMID: 38146469 PMCID: PMC10749364 DOI: 10.3389/fpubh.2023.1323922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 11/22/2023] [Indexed: 12/27/2023] Open
Abstract
Social media is a powerful communication tool and a reflection of our digital environment. Social media acted as an augmenter and influencer during and after COVID-19. Many of the people sharing social media posts were not actually aware of their mental health status. This situation warrants to automate the detection of mental disorders. This paper presents a methodology for the detection of mental disorders using micro facial expressions. Micro-expressions are momentary, involuntary facial expressions that can be indicative of deeper feelings and mental states. Nevertheless, manually detecting and interpreting micro-expressions can be rather challenging. A deep learning HybridMicroNet model, based on convolution neural networks, is proposed for emotion recognition from micro-expressions. Further, a case study for the detection of mental health has been undertaken. The findings demonstrated that the proposed model achieved a high accuracy when attempting to diagnose mental health disorders based on micro-expressions. The attained accuracy on the CASME dataset was 99.08%, whereas the accuracy that was achieved on SAMM dataset was 97.62%. Based on these findings, deep learning may prove to be an effective method for diagnosing mental health conditions by analyzing micro-expressions.
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Affiliation(s)
- Deepika Sharma
- Chitkara University Institute of Engineering and Technology, Chitkara University, Punjab, India
| | - Jaiteg Singh
- Chitkara University Institute of Engineering and Technology, Chitkara University, Punjab, India
| | - Babar Shah
- College of Technological Innovation, Zayed University, Dubai, United Arab Emirates
| | - Farman Ali
- Department of Computer Science and Engineering, School of Convergence, College of Computing and Informatics, Sungkyunkwan University, Seoul, Republic of Korea
| | - Ahmad Ali AlZubi
- Department of Computer Science, Community College, King Saud University, Riyadh, Saudi Arabia
| | - Mallak Ahmad AlZubi
- Faculty of Medicine, Jordan University of Science and Technology, Irbid, Jordan
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Pacheco J, Saiz O, Casado S, Ubillos S. A multistart tabu search-based method for feature selection in medical applications. Sci Rep 2023; 13:17140. [PMID: 37816874 PMCID: PMC10564765 DOI: 10.1038/s41598-023-44437-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Accepted: 10/08/2023] [Indexed: 10/12/2023] Open
Abstract
In the design of classification models, irrelevant or noisy features are often generated. In some cases, there may even be negative interactions among features. These weaknesses can degrade the performance of the models. Feature selection is a task that searches for a small subset of relevant features from the original set that generate the most efficient models possible. In addition to improving the efficiency of the models, feature selection confers other advantages, such as greater ease in the generation of the necessary data as well as clearer and more interpretable models. In the case of medical applications, feature selection may help to distinguish which characteristics, habits, and factors have the greatest impact on the onset of diseases. However, feature selection is a complex task due to the large number of possible solutions. In the last few years, methods based on different metaheuristic strategies, mainly evolutionary algorithms, have been proposed. The motivation of this work is to develop a method that outperforms previous methods, with the benefits that this implies especially in the medical field. More precisely, the present study proposes a simple method based on tabu search and multistart techniques. The proposed method was analyzed and compared to other methods by testing their performance on several medical databases. Specifically, eight databases belong to the well-known repository of the University of California in Irvine and one of our own design were used. In these computational tests, the proposed method outperformed other recent methods as gauged by various metrics and classifiers. The analyses were accompanied by statistical tests, the results of which showed that the superiority of our method is significant and therefore strengthened these conclusions. In short, the contribution of this work is the development of a method that, on the one hand, is based on different strategies than those used in recent methods, and on the other hand, improves the performance of these methods.
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Nicolini ME, Jardas EJ, Zarate CA, Gastmans C, Kim SYH. Irremediability in psychiatric euthanasia: examining the objective standard. Psychol Med 2023; 53:5729-5747. [PMID: 36305567 PMCID: PMC10482705 DOI: 10.1017/s0033291722002951] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Revised: 08/22/2022] [Accepted: 08/31/2022] [Indexed: 11/06/2022]
Abstract
BACKGROUND Irremediability is a key requirement for euthanasia and assisted suicide for psychiatric disorders (psychiatric EAS). Countries like the Netherlands and Belgium ask clinicians to assess irremediability in light of the patient's diagnosis and prognosis and 'according to current medical understanding'. Clarifying the relevance of a default objective standard for irremediability when applied to psychiatric EAS is crucial for solid policymaking. Yet so far, a thorough examination of this standard is lacking. METHODS Using treatment-resistant depression (TRD) as a test case, through a scoping review in PubMed, we analyzed the state-of-the-art evidence for whether clinicians can accurately predict individual long-term outcome and single out irremediable cases, by examining the following questions: (1) What is the definition of TRD; (2) What are group-level long-term outcomes of TRD; and (3) Can clinicians make accurate individual outcome predictions in TRD? RESULTS A uniform definition of TRD is lacking, with over 150 existing definitions, mostly focused on psychopharmacological research. Available yet limited studies about long-term outcomes indicate that a majority of patients with long-term TRD show significant improvement over time. Finally, evidence about individual predictions in TRD using precision medicine is growing, but methodological shortcomings and varying predictive accuracies pose important challenges for its implementation in clinical practice. CONCLUSION Our findings support the claim that, as per available evidence, clinicians cannot accurately predict long-term chances of recovery in a particular patient with TRD. This means that the objective standard for irremediability cannot be met, with implications for policy and practice of psychiatric EAS.
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Affiliation(s)
- Marie E Nicolini
- Department of Bioethics, National Institutes of Health, 10 Center Drive, Room 1C118, Bethesda, Maryland 20892, USA
- Center for Biomedical Ethics and Law, KU Leuven, Kapucijnenvoer 35 - Box 7001, 3000 Leuven, Belgium
| | - E J Jardas
- Department of Bioethics, National Institutes of Health, 10 Center Drive, Room 1C118, Bethesda, Maryland 20892, USA
| | - Carlos A Zarate
- Section on the Neurobiology and Treatment of Mood Disorders, Experimental Therapeutics and Pathophysiology Branch, National Institutes of Mental Health, 6001 Executive Boulevard, Room 6200, MSC 9663, Bethesda, MD 20892, USA
| | - Chris Gastmans
- Center for Biomedical Ethics and Law, KU Leuven, Kapucijnenvoer 35 - Box 7001, 3000 Leuven, Belgium
| | - Scott Y H Kim
- Department of Bioethics, National Institutes of Health, 10 Center Drive, Room 1C118, Bethesda, Maryland 20892, USA
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Montazeri M, Montazeri M, Bahaadinbeigy K, Montazeri M, Afraz A. Application of machine learning methods in predicting schizophrenia and bipolar disorders: A systematic review. Health Sci Rep 2023; 6:e962. [PMID: 36589632 PMCID: PMC9795991 DOI: 10.1002/hsr2.962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Revised: 11/10/2022] [Accepted: 11/15/2022] [Indexed: 12/29/2022] Open
Abstract
Background and Aim Schizophrenia and bipolar disorder (BD) are critical and high-risk inherited mental disorders with debilitating symptoms. Worldwide, 3% of the population suffers from these disorders. The mortality rate of these patients is higher compared to other people. Current procedures cannot effectively diagnose these disorders because it takes an average of 10 years from the onset of the first symptoms to the definitive diagnosis of the disease. Machine learning (ML) techniques are used to meet this need. This study aimed to summarize information on the use of ML techniques for predicting schizophrenia and BD to help early and timely diagnosis of the disease. Methods A systematic literature search included articles published until January 19, 2020 in 3 databases. Two reviewers independently assessed original papers to determine eligibility for inclusion in this review. PRISMA guidelines were followed to conduct the study, and the Prediction Model Risk of Bias Assessment Tool (PROBAST) to assess included papers. Results In this review, 1243 papers were retrieved through database searches, of which 15 papers were included based on full-text assessment. ML techniques were used to predict schizophrenia and BDs. The main algorithms applied were support vector machine (SVM) (10 studies), random forests (RF) (5 studies), and gradient boosting (GB) (3 studies). Input and output characteristics were very diverse and have been kept to enable future research. RFs algorithms demonstrated significantly higher accuracy and sensitivity than SVM and GB. GB demonstrated significantly higher specificity than SVM and RF. We found no significant difference between RF and SVM in terms of specificity. Conclusion ML can precisely predict results and assist in making clinical decisions-concerning schizophrenia and BD. RF often performed better than other algorithms in supervised learning tasks. This study identified gaps in the literature and opportunities for future psychological ML research.
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Affiliation(s)
- Mahdieh Montazeri
- Department of Health Information Sciences, Faculty of Management and Medical Information SciencesKerman University of Medical SciencesKermanIran
- Medical Informatics Research Center, Institute for Futures Studies in HealthKerman University of Medical SciencesKermanIran
| | - Mitra Montazeri
- Medical Informatics Research Center, Institute for Futures Studies in HealthKerman University of Medical SciencesKermanIran
| | - Kambiz Bahaadinbeigy
- Medical Informatics Research Center, Institute for Futures Studies in HealthKerman University of Medical SciencesKermanIran
| | - Mohadeseh Montazeri
- Department of Computer, Faculty of FatimahKerman Branch Technical and Vocational UniversityKermanIran
| | - Ali Afraz
- Medical Informatics Research Center, Institute for Futures Studies in HealthKerman University of Medical SciencesKermanIran
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Alzubi R, Alzoubi H, Katsigiannis S, West D, Ramzan N. Automated Detection of Substance-Use Status and Related Information from Clinical Text. SENSORS (BASEL, SWITZERLAND) 2022; 22:9609. [PMID: 36559979 PMCID: PMC9783118 DOI: 10.3390/s22249609] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/05/2022] [Revised: 11/21/2022] [Accepted: 11/25/2022] [Indexed: 06/17/2023]
Abstract
This study aims to develop and evaluate an automated system for extracting information related to patient substance use (smoking, alcohol, and drugs) from unstructured clinical text (medical discharge records). The authors propose a four-stage system for the extraction of the substance-use status and related attributes (type, frequency, amount, quit-time, and period). The first stage uses a keyword search technique to detect sentences related to substance use and to exclude unrelated records. In the second stage, an extension of the NegEx negation detection algorithm is developed and employed for detecting the negated records. The third stage involves identifying the temporal status of the substance use by applying windowing and chunking methodologies. Finally, in the fourth stage, regular expressions, syntactic patterns, and keyword search techniques are used in order to extract the substance-use attributes. The proposed system achieves an F1-score of up to 0.99 for identifying substance-use-related records, 0.98 for detecting the negation status, and 0.94 for identifying temporal status. Moreover, F1-scores of up to 0.98, 0.98, 1.00, 0.92, and 0.98 are achieved for the extraction of the amount, frequency, type, quit-time, and period attributes, respectively. Natural Language Processing (NLP) and rule-based techniques are employed efficiently for extracting substance-use status and attributes, with the proposed system being able to detect substance-use status and attributes over both sentence-level and document-level data. Results show that the proposed system outperforms the compared state-of-the-art substance-use identification system on an unseen dataset, demonstrating its generalisability.
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Affiliation(s)
- Raid Alzubi
- Department of Computer Science, College of Computer Science and Information Technology, King Faisal University, Al-Ahsa 31982, Saudi Arabia
| | - Hadeel Alzoubi
- Department of Computer Science, College of Computer Science and Information Technology, King Faisal University, Al-Ahsa 31982, Saudi Arabia
| | - Stamos Katsigiannis
- Department of Computer Science, Durham University, Upper Mountjoy Campus, Stockton Road, Durham DH1 3LE, UK
| | - Daune West
- School of Computing, Engineering and Physical Sciences, University of the West of Scotland, High St., Paisley PA1 2BE, UK
| | - Naeem Ramzan
- School of Computing, Engineering and Physical Sciences, University of the West of Scotland, High St., Paisley PA1 2BE, UK
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Malhotra A, Jindal R. Deep learning techniques for suicide and depression detection from online social media: A scoping review. Appl Soft Comput 2022. [DOI: 10.1016/j.asoc.2022.109713] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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11
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Molinari-Ulate M, Mahmoudi A, Franco-Martín MA, van der Roest HG. Psychometric characteristics of comprehensive geriatric assessments (CGAs) for long-term care facilities and community care: A systematic review. Ageing Res Rev 2022; 81:101742. [PMID: 36184026 DOI: 10.1016/j.arr.2022.101742] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Revised: 09/27/2022] [Accepted: 09/27/2022] [Indexed: 01/31/2023]
Abstract
BACKGROUND Comprehensive Geriatric Assessments (CGAs) have been incorporated as an integrated care approach effective to face the challenges associated to uncoordinated care, risk of hospitalization, unmet needs, and care planning experienced in older adult care. As they assessed different dimensions, is important to inform about the content and psychometric properties to guide the decisions when selecting and implementing them in practice. This systematic review provides a comprehensive insight on the strengths and weaknesses of the CGAs used in long-term care settings and community care. METHODS A systematic search was conducted in PubMed, CINAHL, and Web of Science Core Collection. Studies published up to July 13, 2021, were considered. Quality appraisal was performed for the included studies. RESULTS A total of 10 different CGAs were identified from 71 studies included. Three instruments were reported for long-term care settings, and seven for community care. The content was not homogenous and differed in terms of the detail and clearness of the areas being evaluated. Evidence for good to excellent validity and reliability was reported for various instruments. CONCLUSIONS Setting more specific and clear domains, associated to the special needs of the care setting, could improve informed decisions at the time of selecting and implementing a CGA. Considering the amount and quality of the evidence, the instrument development trajectory, the validation in different languages, and availability in different care settings, we recommend the interRAI LTCF and interRAI HC to be used for long-term facilities and community care.
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Affiliation(s)
- Mauricio Molinari-Ulate
- Psycho-Sciences Research Group, Institute of Biomedical Research of Salamanca, University of Salamanca, Spain; Department of Research and Development, Iberian Institute of Research in Psycho-Sciences, INTRAS Foundation, Zamora, Spain.
| | - Aysan Mahmoudi
- Psycho-Sciences Research Group, Institute of Biomedical Research of Salamanca, University of Salamanca, Spain; Department of Research and Development, Iberian Institute of Research in Psycho-Sciences, INTRAS Foundation, Zamora, Spain.
| | - Manuel A Franco-Martín
- Psycho-Sciences Research Group, Institute of Biomedical Research of Salamanca, University of Salamanca, Spain; Psychiatric and Mental Health Department, Zamora Healthcare Complex, Zamora, Spain.
| | - Henriëtte G van der Roest
- Department on Aging, Netherlands Institute of Mental Health and Addiction (Trimbos Institute), Utrecht, the Netherlands.
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Nordin N, Zainol Z, Mohd Noor MH, Chan LF. Suicidal behaviour prediction models using machine learning techniques: A systematic review. Artif Intell Med 2022; 132:102395. [DOI: 10.1016/j.artmed.2022.102395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Revised: 08/12/2022] [Accepted: 08/29/2022] [Indexed: 11/02/2022]
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Kabir MK, Islam M, Kabir ANB, Haque A, Rhaman MK. Detection of Depression Severity Using Bengali Social Media Posts on Mental Health: Study Using Natural Language Processing Techniques. JMIR Form Res 2022; 6:e36118. [PMID: 36169989 PMCID: PMC9557762 DOI: 10.2196/36118] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2022] [Revised: 05/16/2022] [Accepted: 07/20/2022] [Indexed: 11/13/2022] Open
Abstract
Background
There are a myriad of language cues that indicate depression in written texts, and natural language processing (NLP) researchers have proven the ability of machine learning and deep learning approaches to detect these cues. However, to date, these approaches bridging NLP and the domain of mental health for Bengali literature are not comprehensive. The Bengali-speaking population can express emotions in their native language in greater detail.
Objective
Our goal is to detect the severity of depression using Bengali texts by generating a novel Bengali corpus of depressive posts. We collaborated with mental health experts to generate a clinically sound labeling scheme and an annotated corpus to train machine learning and deep learning models.
Methods
We conducted a study using Bengali text-based data from blogs and open source platforms. We constructed a procedure for annotated corpus generation and extraction of textual information from Bengali literature for predictive analysis. We developed our own structured data set and designed a clinically sound labeling scheme with the help of mental health professionals, adhering to the Diagnostic and Statistical Manual of Mental Disorders, Fifth Edition (DSM-5) during the process. We used 5 machine learning models for detecting the severity of depression: kernel support vector machine (SVM), random forest, logistic regression K-nearest neighbor (KNN), and complement naive Bayes (NB). For the deep learning approach, we used long short-term memory (LSTM) units and gated recurrent units (GRUs) coupled with convolutional blocks or self-attention layers. Finally, we aimed for enhanced outcomes by using state-of-the-art pretrained language models.
Results
The independent recurrent neural network (RNN) models yielded the highest accuracies and weighted F1 scores. GRUs, in particular, produced 81% accuracy. The hybrid architectures could not surpass the RNNs in terms of performance. Kernel SVM with term frequency–inverse document frequency (TF-IDF) embeddings generated 78% accuracy on test data. We used validation and training loss curves to observe and report the performance of our architectures. Overall, the number of available data remained the limitation of our experiment.
Conclusions
The findings from our experimental setup indicate that machine learning and deep learning models are fairly capable of assessing the severity of mental health issues from texts. For the future, we suggest more research endeavors to increase the volume of Bengali text data, in particular, so that modern architectures reach improved generalization capability.
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Affiliation(s)
| | - Maisha Islam
- Department of Computer Science, Brac University, Dhaka, Bangladesh
| | | | - Adiba Haque
- Department of Computer Science, Brac University, Dhaka, Bangladesh
| | - Md Khalilur Rhaman
- Department of Computer Science and Engineering, Brac University, Dhaka, Bangladesh
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Zhenhua H, Nan W. Empirical analysis based on the related factors of college students’ mental health problems. Front Psychol 2022; 13:997910. [PMID: 36225711 PMCID: PMC9549384 DOI: 10.3389/fpsyg.2022.997910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Accepted: 09/01/2022] [Indexed: 11/13/2022] Open
Abstract
Interpersonal relationship is one of the important factors affecting college students’ mental health. The relationship between interpersonal relationship and college students’ mental health has also become a large number of academic research topics. In order to explore whether there is a correlation between optimism and college students’ mental health, and if so, what kind of situation it presents. Based on literature review, mathematical statistics and questionnaire survey, this study optimized the iterative process of clustering algorithm. Extract valuable parts from a large amount of precipitation of students’ psychological data, establish data models, and provide decision-making guidance for managers. The results show that there are significant differences between optimists and pessimists in optimistic factors and pessimistic factors. Optimists score significantly higher on optimistic factors than pessimists, while pessimists score significantly lower than pessimists. Conclusion optimism can significantly alleviate life stress and intervene psychological crisis.
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Affiliation(s)
- Huang Zhenhua
- College of Materials Science and Engineering, Qiqihar University, Qiqihar, Heilongjiang, China
- *Correspondence: Huang Zhenhua,
| | - Wang Nan
- College of Foreign Languages, Qiqihar University, Qiqihar, Heilongjiang, China
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15
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Libório MP, Kritski A, Almeida IND, Miranda PFC, Mesquita JRLD, Mota RMS, Sousa GJB, Pires Neto RDJ, Leitão TDMJS. Impact of a computer system as a triage tool in the management of pulmonary tuberculosis in a HIV reference center in Brazil. Rev Soc Bras Med Trop 2022; 55:e0451. [PMID: 35946632 PMCID: PMC9344949 DOI: 10.1590/0037-8682-0451-20] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2021] [Accepted: 02/15/2022] [Indexed: 11/22/2022] Open
Abstract
Background: The Neural Clinical Score for tuberculosis (NCS-TB) is a computer system developed to improve the triage of presumed pulmonary TB (pPTB). Methods: A study was performed with cohorts of pPTB patients cared for at a reference hospital in Northeast Brazil. Results: The NCS-TB sensitivity was 76.5% for TB diagnosis, which shortened the time from triage to smear microscopy results (3.3 to 2.5 days; p<0.001) and therapy initiation (6.7 to 4.1 days; p=0.045). Conclusions: Although the NCS-TB was not suitable as a screening tool, it was able to optimize laboratory diagnosis and shorten the time to treatment initiation.
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Affiliation(s)
- Mariana Pitombeira Libório
- Universidade Federal do Ceará, Faculdade de Medicina, Programa de Mestrado em Saúde Pública, Fortaleza, CE, Brasil.,Secretaria da Saúde do Estado do Ceará, Hospital São José de Doenças Infecciosas, Fortaleza, CE, Brasil.,Universidade de Fortaleza, Faculdade de Medicina, Fortaleza, CE, Brasil
| | - Afrânio Kritski
- Universidade Federal do Rio de Janeiro, Programa Acadêmico de Tuberculose, Faculdade de Medicina, Rio de Janeiro, RJ, Brasil
| | - Isabela Neves de Almeida
- Universidade Federal de Ouro Preto, Escola de Farmácia, Departamento de Análises Clínicas, Ouro Preto, MG, Brasil
| | | | | | - Rosa Maria Salani Mota
- Universidade Federal do Ceará, Faculdade de Medicina, Programa de Mestrado em Saúde Pública, Fortaleza, CE, Brasil
| | - George Jó Bezerra Sousa
- Universidade Estadual do Ceará, Programa de Pós-Graduação em Cuidados Clínicos em Enfermagem e Saúde, Fortaleza, CE, Brasil
| | - Roberto da Justa Pires Neto
- Universidade Federal do Ceará, Faculdade de Medicina, Programa de Mestrado em Saúde Pública, Fortaleza, CE, Brasil.,Secretaria da Saúde do Estado do Ceará, Hospital São José de Doenças Infecciosas, Fortaleza, CE, Brasil
| | - Terezinha do Menino Jesus Silva Leitão
- Universidade Federal do Ceará, Faculdade de Medicina, Programa de Mestrado em Saúde Pública, Fortaleza, CE, Brasil.,Secretaria da Saúde do Estado do Ceará, Hospital São José de Doenças Infecciosas, Fortaleza, CE, Brasil
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16
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Classification of Depressive and Schizophrenic Episodes Using Night-Time Motor Activity Signal. Healthcare (Basel) 2022; 10:healthcare10071256. [PMID: 35885784 PMCID: PMC9318635 DOI: 10.3390/healthcare10071256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Revised: 07/01/2022] [Accepted: 07/01/2022] [Indexed: 11/21/2022] Open
Abstract
Major depressive disorder (MDD) is the most recurrent mental illness globally, affecting approximately 5% of adults. Furthermore, according to the National Institute of Mental Health (NIMH) of the U.S., calculating an actual schizophrenia prevalence rate is challenging because of this illness’s underdiagnosis. Still, most current global metrics hover between 0.33% and 0.75%. Machine-learning scientists use data from diverse sources to analyze, classify, or predict to improve the psychiatric attention, diagnosis, and treatment of MDD, schizophrenia, and other psychiatric conditions. Motor activity data are gaining popularity in mental illness diagnosis assistance because they are a cost-effective and noninvasive method. In the knowledge discovery in databases (KDD) framework, a model to classify depressive and schizophrenic patients from healthy controls is constructed using accelerometer data. Taking advantage of the multiple sleep disorders caused by mental disorders, the main objective is to increase the model’s accuracy by employing only data from night-time activity. To compare the classification between the stages of the day and improve the accuracy of the classification, the total activity signal was cut into hourly time lapses and then grouped into subdatasets depending on the phases of the day: morning (06:00–11:59), afternoon (12:00–17:59), evening (18:00–23:59), and night (00:00–05:59). Random forest classifier (RFC) is the algorithm proposed for multiclass classification, and it uses accuracy, recall, precision, the Matthews correlation coefficient, and F1 score to measure its efficiency. The best model was night-featured data and RFC, with 98% accuracy for the classification of three classes. The effectiveness of this experiment leads to less monitoring time for patients, reducing stress and anxiety, producing more efficient models, using wearables, and increasing the amount of data.
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17
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Lin H, Bu N. A CNN-Based Framework for Predicting Public Emotion and Multi-Level Behaviors Based on Network Public Opinion. Front Psychol 2022; 13:909439. [PMID: 35814112 PMCID: PMC9261495 DOI: 10.3389/fpsyg.2022.909439] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 05/11/2022] [Indexed: 11/20/2022] Open
Abstract
Analysis of network public opinion can help to effectively predict the public emotion and the multi-level government behaviors. Due to the massive and multidimensional characteristics of network public opinion data, the in-depth value mining of public opinion is one of the research bottlenecks. Based on Term Frequency-Inverse Document Frequency (TF-IDF) and deep learning technologies, this paper proposes an advanced TF-IDF mechanism, namely TF-IDF-COR, to extract text feature representations of public opinions and develops a CNN-based prediction model to predict the tendency of publics' emotion and mental health. The proposed method can accurately judge the emotional tendency of network users. The main contribution of this paper is as follows: (1) based on the advantages of TF-IDF mechanism, we propose a TF-IDF-COR mechanism, which integrates the correlation coefficient of word embeddings to TF-IDF. (2) To make the extracted feature semantic information more comprehensive, CNN and TF-IDF-COR are combined to form an effective COR-CNN model for emotion and mental health prediction. Finally, experiments on Sina-Weibo and Twitter opinion data sets show that the improved TF-IDF-COR and the COR-CNN model have better classification performance than traditional classification models. In the experiment, we compare the proposed COR-CNN with support vector machine, k-nearest neighbors, and convolutional neural network in terms of accuracy and F1 score. Experiment results show that COR-CNN performs much better than the three baseline models.
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Affiliation(s)
- Hangfeng Lin
- School of Political Science and Public Administration, East China University of Political Science and Law, Shanghai, China
- *Correspondence: Hangfeng Lin
| | - Naiqing Bu
- School of Sociology, Sanya University, Sanya, China
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18
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Ye Z, Wang XK, Lv YH, Wang X, Cui YC. The Integrated Analysis Identifies Three Critical Genes as Novel Diagnostic Biomarkers Involved in Immune Infiltration in Atherosclerosis. Front Immunol 2022; 13:905921. [PMID: 35663954 PMCID: PMC9159807 DOI: 10.3389/fimmu.2022.905921] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 04/13/2022] [Indexed: 11/13/2022] Open
Abstract
Atherosclerosis (AS), a chronic inflammatory disease of the blood vessels, is the primary cause of cardiovascular disease, the leading cause of death worldwide. This study aimed to identify possible diagnostic markers for AS and determine their correlation with the infiltration of immune cells in AS. In total, 10 serum samples from AS patients and 10 samples from healthy subjects were collected. The original gene expression profiles of GSE43292 and GSE57691 were downloaded from the Gene Expression Omnibus database. Least absolute shrinkage and selection operator regression model and support vector machine recursive feature elimination analyses were carried out to identify candidate markers. The diagnostic values of the identified biomarkers were determined using receiver operating characteristic assays. The compositional patterns of the 22 types of immune cell fraction in AS were estimated using CIBERSORT. RT-PCR was performed to further determine the expression of the critical genes. This study identified 17 differentially expressed genes (DEGs) in AS samples. The identified DEGs were mainly involved in non-small cell lung carcinoma, pulmonary fibrosis, polycystic ovary syndrome, glucose intolerance, and T-cell leukemia. FHL5, IBSP, and SCRG1 have been identified as the diagnostic genes in AS. The expression of SCRG1 and FHL5 was distinctly downregulated in AS samples, and the expression of IBSP was distinctly upregulated in AS samples, which was further confirmed using our cohort by RT-PCR. Moreover, immune assays revealed that FHL5, IBSP, and SCRG1 were associated with several immune cells, such as CD8 T cells, naïve B cells, macrophage M0, activated memory CD4 T cells, and activated NK cells. Overall, future investigations into the occurrence and molecular mechanisms of AS may benefit from using the genes FHL5, IBSP, and SCRG1 as diagnostic markers for the condition.
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Affiliation(s)
- Zhen Ye
- Center for Cardiovascular Experimental Study and Evaluation, Fuwai Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, State Key Laboratory of Cardiovascular Disease, National Center for Cardiovascular Diseases, Beijing Key Laboratory of Pre-clinical Research and Evaluation for Cardiovascular Implant Materials, Beijing, China.,Department of Pharmacy, Suqian First Hospital, Suqian, China
| | - Xiao-Kang Wang
- Center for Cardiovascular Experimental Study and Evaluation, Fuwai Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, State Key Laboratory of Cardiovascular Disease, National Center for Cardiovascular Diseases, Beijing Key Laboratory of Pre-clinical Research and Evaluation for Cardiovascular Implant Materials, Beijing, China
| | - Yun-Hui Lv
- Center for Cardiovascular Experimental Study and Evaluation, Fuwai Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, State Key Laboratory of Cardiovascular Disease, National Center for Cardiovascular Diseases, Beijing Key Laboratory of Pre-clinical Research and Evaluation for Cardiovascular Implant Materials, Beijing, China
| | - Xin Wang
- Center for Cardiovascular Experimental Study and Evaluation, Fuwai Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, State Key Laboratory of Cardiovascular Disease, National Center for Cardiovascular Diseases, Beijing Key Laboratory of Pre-clinical Research and Evaluation for Cardiovascular Implant Materials, Beijing, China
| | - Yong-Chun Cui
- Center for Cardiovascular Experimental Study and Evaluation, Fuwai Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, State Key Laboratory of Cardiovascular Disease, National Center for Cardiovascular Diseases, Beijing Key Laboratory of Pre-clinical Research and Evaluation for Cardiovascular Implant Materials, Beijing, China
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19
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Harvey D, Lobban F, Rayson P, Warner A, Jones S. Natural Language Processing Methods and Bipolar Disorder: Scoping Review. JMIR Ment Health 2022; 9:e35928. [PMID: 35451984 PMCID: PMC9077496 DOI: 10.2196/35928] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Revised: 03/15/2022] [Accepted: 03/20/2022] [Indexed: 02/05/2023] Open
Abstract
BACKGROUND Health researchers are increasingly using natural language processing (NLP) to study various mental health conditions using both social media and electronic health records (EHRs). There is currently no published synthesis that relates specifically to the use of NLP methods for bipolar disorder, and this scoping review was conducted to synthesize valuable insights that have been presented in the literature. OBJECTIVE This scoping review explored how NLP methods have been used in research to better understand bipolar disorder and identify opportunities for further use of these methods. METHODS A systematic, computerized search of index and free-text terms related to bipolar disorder and NLP was conducted using 5 databases and 1 anthology: MEDLINE, PsycINFO, Academic Search Ultimate, Scopus, Web of Science Core Collection, and the ACL Anthology. RESULTS Of 507 identified studies, a total of 35 (6.9%) studies met the inclusion criteria. A narrative synthesis was used to describe the data, and the studies were grouped into four objectives: prediction and classification (n=25), characterization of the language of bipolar disorder (n=13), use of EHRs to measure health outcomes (n=3), and use of EHRs for phenotyping (n=2). Ethical considerations were reported in 60% (21/35) of the studies. CONCLUSIONS The current literature demonstrates how language analysis can be used to assist in and improve the provision of care for people living with bipolar disorder. Individuals with bipolar disorder and the medical community could benefit from research that uses NLP to investigate risk-taking, web-based services, social and occupational functioning, and the representation of gender in bipolar disorder populations on the web. Future research that implements NLP methods to study bipolar disorder should be governed by ethical principles, and any decisions regarding the collection and sharing of data sets should ultimately be made on a case-by-case basis, considering the risk to the data participants and whether their privacy can be ensured.
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Affiliation(s)
- Daisy Harvey
- Spectrum Centre for Mental Health Research, Division of Health Research, School of Health and Medicine, Lancaster University, Lancaster, United Kingdom
| | - Fiona Lobban
- Spectrum Centre for Mental Health Research, Division of Health Research, School of Health and Medicine, Lancaster University, Lancaster, United Kingdom
| | - Paul Rayson
- Department of Computing and Communications, Lancaster University, Lancaster, United Kingdom
| | - Aaron Warner
- Spectrum Centre for Mental Health Research, Division of Health Research, School of Health and Medicine, Lancaster University, Lancaster, United Kingdom
| | - Steven Jones
- Spectrum Centre for Mental Health Research, Division of Health Research, School of Health and Medicine, Lancaster University, Lancaster, United Kingdom
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20
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Comparison of Machine Learning Algorithms in the Prediction of Hospitalized Patients with Schizophrenia. SENSORS 2022; 22:s22072517. [PMID: 35408133 PMCID: PMC9003328 DOI: 10.3390/s22072517] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 03/23/2022] [Accepted: 03/23/2022] [Indexed: 12/26/2022]
Abstract
New computational methods have emerged through science and technology to support the diagnosis of mental health disorders. Predictive models developed from machine learning algorithms can identify disorders such as schizophrenia and support clinical decision making. This research aims to compare the performance of machine learning algorithms: Decision Tree, AdaBoost, Random Forest, Naïve Bayes, Support Vector Machine, and k-Nearest Neighbor in the prediction of hospitalized patients with schizophrenia. The data set used in the study contains a total of 11,884 electronic admission records corresponding to 6933 patients with various mental health disorders; these records belong to the acute units of 11 public hospitals in a region of Spain. Of the total, 5968 records correspond to patients diagnosed with schizophrenia (3002 patients) and 5916 records correspond to patients with other mental health disorders (3931 patients). The results recommend Random Forest with the best accuracy of 72.7%. Furthermore, this algorithm presents 79.6%, 72.8%, 72.7%, and 72.7% for AUC, precision, F1-Score, and recall, respectively. The results obtained suggest that the use of machine learning algorithms can classify hospitalized patients with schizophrenia in this population and help in the hospital management of this type of disorder, to reduce the costs associated with hospitalization.
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21
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Rubeis G. iHealth: The ethics of artificial intelligence and big data in mental healthcare. Internet Interv 2022; 28:100518. [PMID: 35257003 PMCID: PMC8897624 DOI: 10.1016/j.invent.2022.100518] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 01/11/2022] [Accepted: 02/24/2022] [Indexed: 01/13/2023] Open
Abstract
The concept of intelligent health (iHealth) in mental healthcare integrates artificial intelligence (AI) and Big Data analytics. This article is an attempt to outline ethical aspects linked to iHealth by focussing on three crucial elements that have been defined in the literature: self-monitoring, ecological momentary assessment (EMA), and data mining. The material for the analysis was obtained by a database search. Studies and reviews providing outcome data for each of the three elements were analyzed. An ethical framing of the results was conducted that shows the chances and challenges of iHealth. The synergy between self-monitoring, EMA, and data mining might enable the prevention of mental illness, the prediction of its onset, the personalization of treatment, and the participation of patients in the treatment process. Challenges arise when it comes to the autonomy of users, privacy and data security of users, and potential bias.
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22
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Mishra S, Tripathy HK, Kumar Thakkar H, Garg D, Kotecha K, Pandya S. An Explainable Intelligence Driven Query Prioritization Using Balanced Decision Tree Approach for Multi-Level Psychological Disorders Assessment. Front Public Health 2021; 9:795007. [PMID: 34976936 PMCID: PMC8718454 DOI: 10.3389/fpubh.2021.795007] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Accepted: 11/10/2021] [Indexed: 11/20/2022] Open
Abstract
Human emotions affect psychological health to a great level. Positive emotions relate to health improvement; whereas negative emotions may aggravate psychological disorders such as anxiety, stress, and depression. Although there exist several computational methods to predict psychological disorders, most of them provide a black-box view of uncertainty. This research involves developing a novel predictive model for multi class psychological risk recognition with an accurate explainable interface. Standard questionnaires are utilized as data set and a new approach called a Q-Prioritization is employed to drop insignificant questions from the data set. Moreover, a novel balanced decision tree method based on repetitive oversampling is applied for the training and testing of the model. Predictive nature along with its contributing factors are interpreted with three techniques such as permuted feature importance, contrastive explanation, and counterfactual method, which together form a reasoning engine. The prediction outcome generated an impressive performance with an aggregated accuracy of 98.25%. The mean precision, recall, and F-score metric recorded were 0.98, 0.977, and 0.979, respectively. Also, it was noted that without applying Q-Prioritization, the accuracy significantly drops to 90.25%. The error rate observed with our model was only 0.026. The proposed multi-level psychological disorder predictive model can successfully serve as an assistive deployment for medical experts in the effective treatment of mental health.
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Affiliation(s)
- Sushruta Mishra
- School of Computer Engineering, Kalinga Institute of Industrial Technology, Deemed to Be University, Bhubaneswar, India
| | - Hrudaya Kumar Tripathy
- School of Computer Engineering, Kalinga Institute of Industrial Technology, Deemed to Be University, Bhubaneswar, India
| | | | - Deepak Garg
- Department of Computer Science and Engineering, School of Engineering and Sciences, Bennett University, Greater Noida, India
| | - Ketan Kotecha
- Symbiosis Centre for Applied Artificial Intelligence, Symbosis International (Deemed) University, Pune, India
| | - Sharnil Pandya
- Symbiosis Institute of Technology, Symbosis International (Deemed) University, Pune, India
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Classification of psychiatric symptoms using deep interaction networks: the CASPIAN-IV study. Sci Rep 2021; 11:15706. [PMID: 34344950 PMCID: PMC8333323 DOI: 10.1038/s41598-021-95208-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Accepted: 07/09/2021] [Indexed: 11/08/2022] Open
Abstract
Identifying the possible factors of psychiatric symptoms among children can reduce the risk of adverse psychosocial outcomes in adulthood. We designed a classification tool to examine the association between modifiable risk factors and psychiatric symptoms, defined based on the Persian version of the WHO-GSHS questionnaire in a developing country. Ten thousand three hundred fifty students, aged 6–18 years from all Iran provinces, participated in this study. We used feature discretization and encoding, stability selection, and regularized group method of data handling (GMDH) to classify the a priori specific factors (e.g., demographic, sleeping-time, life satisfaction, and birth-weight) to psychiatric symptoms. Self-rated health was the most critical feature. The selected modifiable factors were eating breakfast, screentime, salty snack for depression symptom, physical activity, salty snack for worriedness symptom, (abdominal) obesity, sweetened beverage, and sleep-hour for mild-to-moderate emotional symptoms. The area under the ROC curve of the GMDH was 0.75 (CI 95% 0.73–0.76) for the analyzed psychiatric symptoms using threefold cross-validation. It significantly outperformed the state-of-the-art (adjusted p < 0.05; McNemar's test). In this study, the association of psychiatric risk factors and the importance of modifiable nutrition and lifestyle factors were emphasized. However, as a cross-sectional study, no causality can be inferred.
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A Comprehensive Survey on Data Utility and Privacy: Taking Indian Healthcare System as a Potential Case Study. INVENTIONS 2021. [DOI: 10.3390/inventions6030045] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Background: According to the renowned and Oscar award-winning American actor and film director Marlon Brando, “privacy is not something that I am merely entitled to, it is an absolute prerequisite.” Privacy threats and data breaches occur daily, and countries are mitigating the consequences caused by privacy and data breaches. The Indian healthcare industry is one of the largest and rapidly developing industry. Overall, healthcare management is changing from disease-centric into patient-centric systems. Healthcare data analysis also plays a crucial role in healthcare management, and the privacy of patient records must receive equal attention. Purpose: This paper mainly presents the utility and privacy factors of the Indian healthcare data and discusses the utility aspect and privacy problems concerning Indian healthcare systems. It defines policies that reform Indian healthcare systems. The case study of the NITI Aayog report is presented to explain how reformation occurs in Indian healthcare systems. Findings: It is found that there have been numerous research studies conducted on Indian healthcare data across all dimensions; however, privacy problems in healthcare, specifically in India, are caused by prevalent complacency, culture, politics, budget limitations, large population, and existing infrastructures. This paper reviews the Indian healthcare system and the applications that drive it. Additionally, the paper also maps that how privacy issues are happening in every healthcare sector in India. Originality/Value: To understand these factors and gain insights, understanding Indian healthcare systems first is crucial. To the best of our knowledge, we found no recent papers that thoroughly reviewed the Indian healthcare system and its privacy issues. The paper is original in terms of its overview of the healthcare system and privacy issues. Social Implications: Privacy has been the most ignored part of the Indian healthcare system. With India being a country with a population of 130 billion, much healthcare data are generated every day. The chances of data breaches and other privacy violations on such sensitive data cannot be avoided as they cause severe concerns for individuals. This paper segregates the healthcare system’s advances and lists the privacy that needs to be addressed first.
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25
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Góngora Alonso S, de Bustos Molina A, Sainz-De-Abajo B, Franco-Martín M, De la Torre Díez I. Analysis of Mental Health Disease Trends Using BeGraph Software in Spanish Health Care Centers: Case Study. JMIR Med Inform 2021; 9:e15527. [PMID: 34132650 PMCID: PMC8277413 DOI: 10.2196/15527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Revised: 09/17/2020] [Accepted: 04/12/2021] [Indexed: 11/29/2022] Open
Abstract
Background In the era of big data, networks are becoming a popular factor in the field of data analysis. Networks are part of the main structure of BeGraph software, which is a 3D visualization application dedicated to the analysis of complex networks. Objective The main objective of this research was to visually analyze tendencies of mental health diseases in a region of Spain, using the BeGraph software, in order to make the most appropriate health-related decisions in each case. Methods For the study, a database was used with 13,531 records of patients with mental health disorders in three acute medical units from different health care complexes in a region of Spain. For the analysis, BeGraph software was applied. It is a web-based 3D visualization tool that allows the exploration and analysis of data through complex networks. Results The results obtained with the BeGraph software allowed us to determine the main disease in each of the health care complexes evaluated. We noted 6.50% (463/7118) of admissions involving unspecified paranoid schizophrenia at the University Clinic of Valladolid, 9.62% (397/4128) of admissions involving chronic paranoid schizophrenia with acute exacerbation at the Zamora Hospital, and 8.84% (202/2285) of admissions involving dysthymic disorder at the Rio Hortega Hospital in Valladolid. Conclusions The data analysis allowed us to focus on the main diseases detected in the health care complexes evaluated in order to analyze the behavior of disorders and help in diagnosis and treatment.
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Affiliation(s)
- Susel Góngora Alonso
- Department of Signal Theory and Communications, and Telematics Engineering, University of Valladolid, Valladolid, Spain
| | | | - Beatriz Sainz-De-Abajo
- Department of Signal Theory and Communications, and Telematics Engineering, University of Valladolid, Valladolid, Spain
| | - Manuel Franco-Martín
- Psychiatry Department, Rio Hortega University Hospital and Zamora Hospital, Valladolid, Zamora, Spain
| | - Isabel De la Torre Díez
- Department of Signal Theory and Communications, and Telematics Engineering, University of Valladolid, Valladolid, Spain
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ELGOHARY EM, ABD-ELAZIZ MM. Data mining framework for analyzing Twitter users' opinion on the drug mefloquine. GAZZETTA MEDICA ITALIANA ARCHIVIO PER LE SCIENZE MEDICHE 2021; 180. [DOI: 10.23736/s0393-3660.19.04199-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
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Cha S, Kim SS. Discovery of Association Rules Patterns and Prevalence of Comorbidities in Adult Patients Hospitalized with Mental and Behavioral Disorders. Healthcare (Basel) 2021; 9:healthcare9060636. [PMID: 34072034 PMCID: PMC8228045 DOI: 10.3390/healthcare9060636] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2021] [Revised: 05/15/2021] [Accepted: 05/21/2021] [Indexed: 01/29/2023] Open
Abstract
The objectives of this study were to identify the prevalence of comorbidities of mental and behavioral disorders and to identify the association rules related to comorbidities as a way to improve patient management efficiently. We extracted comorbidities of 20,690 patients (≥19 years old) whose principal diagnosis was a mental disorder from the Korean National Hospital Discharge In-depth Injury Survey (KNHDS) between 2006 and 2016. Association rules analysis between comorbid diseases using the Apriori algorithm was used. The prevalence of comorbidities in all patients was 61.98%. The frequent comorbidities of mental and behavioral disorders were analyzed in the order of hypertensive diseases (11.06%), mood disorders (8.34%), diabetes mellitus (7.98%), and diseases of esophagus, stomach, and duodenum (7.04%). Nine major association pathways were analyzed. Significant pathways were analyzed as diabetes mellitus and hypertensive diseases (IS scale = 0.386), hypertensive diseases, and cerebrovascular diseases (IS scale = 0.240). The association pathway of diabetes mellitus and hypertensive diseases was common in subgroups of mental and behavioral disorders, excluding mood disorders and disorders of adult personality and behavior. By monitoring related diseases based on major patterns, it can predict comorbid diseases in advance, improve the efficiency of managing patients with mental and behavioral disorders, and furthermore, it can be used to establish related health policies.
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Affiliation(s)
- Sunkyung Cha
- Department of Nursing Science, Sunmoon University, Asan 31460, Korea;
| | - Sung-Soo Kim
- Department of Health Administration & Healthcare, Cheongju University, Cheongju 28503, Korea
- Correspondence: ; Tel.: +82-43-229-7998
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Sharma S, Singh G, Sharma M. A comprehensive review and analysis of supervised-learning and soft computing techniques for stress diagnosis in humans. Comput Biol Med 2021; 134:104450. [PMID: 33989896 DOI: 10.1016/j.compbiomed.2021.104450] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2020] [Revised: 04/21/2021] [Accepted: 04/22/2021] [Indexed: 01/02/2023]
Abstract
Stress is the most prevailing and global psychological condition that inevitably disrupts the mood and behavior of individuals. Chronic stress may gravely affect the physical, mental, and social behavior of victims and consequently induce myriad critical human disorders. Herein, a review has been presented where supervised learning (SL) and soft computing (SC) techniques used in stress diagnosis have been meticulously investigated to highlight the contributions, strengths, and challenges faced in the implementation of these methods in stress diagnostic models. A three-tier review strategy comprising of manuscript selection, data synthesis, and data analysis was adopted. The issues in SL strategies and the potential possibility of using hybrid techniques in stress diagnosis have been intensively investigated. The strengths and weaknesses of different SL (Bayesian classifier, random forest, support vector machine, and nearest neighbours) and SC (fuzzy logic, nature-inspired, and deep learning) techniques have been presented to obtain clear insights into these optimization strategies. The effects of social, behavioral, and biological stresses have been highlighted. The psychological, biological, and behavioral responses to stress have also been briefly elucidated. The findings of the study confirmed that different types of data/signals (related to skin temperature, electro-dermal activity, blood circulation, heart rate, facial expressions, etc.) have been used in stress diagnosis. Moreover, there is a potential scope for using distinct nature-inspired computing techniques (Genetic Algorithm, Particle Swarm Optimization, Ant Colony Optimization, Whale Optimization Algorithm, Butterfly Optimization, Harris Hawks Optimizer, and Crow Search Algorithm) and deep learning techniques (Deep-Belief Network, Convolutional-Neural Network, and Recurrent-Neural Network) on multimodal data compiled using behavioral testing, electroencephalogram signals, finger temperature, respiration rate, pupil diameter, galvanic-skin-response, and blood pressure. Likewise, there is a wider scope to investigate the use of SL and SC techniques in stress diagnosis using distinct dimensions such as sentiment analysis, speech recognition, handwriting recognition, and facial expressions. Finally, a hybrid model based on distinct computational methods influenced by both SL and SC techniques, adaption, parameter tuning, and the use of chaos, levy, and Gaussian distribution may address exploration and exploitation issues. However, factors such as real-time data collection, bias, integrity, multi-dimensional data, and data privacy make it challenging to design precise and innovative stress diagnostic systems based on artificial intelligence.
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Borges do Nascimento IJ, Marcolino MS, Abdulazeem HM, Weerasekara I, Azzopardi-Muscat N, Gonçalves MA, Novillo-Ortiz D. Impact of Big Data Analytics on People's Health: Overview of Systematic Reviews and Recommendations for Future Studies. J Med Internet Res 2021; 23:e27275. [PMID: 33847586 PMCID: PMC8080139 DOI: 10.2196/27275] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Revised: 02/19/2021] [Accepted: 03/24/2021] [Indexed: 12/17/2022] Open
Abstract
Background Although the potential of big data analytics for health care is well recognized, evidence is lacking on its effects on public health. Objective The aim of this study was to assess the impact of the use of big data analytics on people’s health based on the health indicators and core priorities in the World Health Organization (WHO) General Programme of Work 2019/2023 and the European Programme of Work (EPW), approved and adopted by its Member States, in addition to SARS-CoV-2–related studies. Furthermore, we sought to identify the most relevant challenges and opportunities of these tools with respect to people’s health. Methods Six databases (MEDLINE, Embase, Cochrane Database of Systematic Reviews via Cochrane Library, Web of Science, Scopus, and Epistemonikos) were searched from the inception date to September 21, 2020. Systematic reviews assessing the effects of big data analytics on health indicators were included. Two authors independently performed screening, selection, data extraction, and quality assessment using the AMSTAR-2 (A Measurement Tool to Assess Systematic Reviews 2) checklist. Results The literature search initially yielded 185 records, 35 of which met the inclusion criteria, involving more than 5,000,000 patients. Most of the included studies used patient data collected from electronic health records, hospital information systems, private patient databases, and imaging datasets, and involved the use of big data analytics for noncommunicable diseases. “Probability of dying from any of cardiovascular, cancer, diabetes or chronic renal disease” and “suicide mortality rate” were the most commonly assessed health indicators and core priorities within the WHO General Programme of Work 2019/2023 and the EPW 2020/2025. Big data analytics have shown moderate to high accuracy for the diagnosis and prediction of complications of diabetes mellitus as well as for the diagnosis and classification of mental disorders; prediction of suicide attempts and behaviors; and the diagnosis, treatment, and prediction of important clinical outcomes of several chronic diseases. Confidence in the results was rated as “critically low” for 25 reviews, as “low” for 7 reviews, and as “moderate” for 3 reviews. The most frequently identified challenges were establishment of a well-designed and structured data source, and a secure, transparent, and standardized database for patient data. Conclusions Although the overall quality of included studies was limited, big data analytics has shown moderate to high accuracy for the diagnosis of certain diseases, improvement in managing chronic diseases, and support for prompt and real-time analyses of large sets of varied input data to diagnose and predict disease outcomes. Trial Registration International Prospective Register of Systematic Reviews (PROSPERO) CRD42020214048; https://www.crd.york.ac.uk/prospero/display_record.php?RecordID=214048
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Affiliation(s)
- Israel Júnior Borges do Nascimento
- School of Medicine, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.,Department of Medicine, School of Medicine, Medical College of Wisconsin, Wauwatosa, WI, United States
| | - Milena Soriano Marcolino
- Department of Internal Medicine, University Hospital, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.,School of Medicine and Telehealth Center, Universidade Federal de Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | | | - Ishanka Weerasekara
- School of Health Sciences, Faculty of Health and Medicine, The University of Newcastle, Callaghan, Australia.,Department of Physiotherapy, Faculty of Allied Health Sciences, University of Peradeniya, Peradeniya, Sri Lanka
| | - Natasha Azzopardi-Muscat
- Division of Country Health Policies and Systems, World Health Organization, Regional Office for Europe, Copenhagen, Denmark
| | - Marcos André Gonçalves
- Department of Computer Science, Institute of Exact Sciences, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil
| | - David Novillo-Ortiz
- Division of Country Health Policies and Systems, World Health Organization, Regional Office for Europe, Copenhagen, Denmark
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Study of the Relationship between ICU Patient Recovery and TCM Treatment in Acute Phase: A Retrospective Study Based on Python Data Mining Technology. EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE 2021; 2021:5548157. [PMID: 33747101 PMCID: PMC7943298 DOI: 10.1155/2021/5548157] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 02/20/2021] [Accepted: 02/23/2021] [Indexed: 11/17/2022]
Abstract
Background Data was mined with the help of an artificial intelligence system based on Python, data was collected, and a database was established using a Python crawler, and the relationship between the outcome of neurosurgery ICU patients and treatment using traditional Chinese medicine was ascertained through data management and statistical processing. Method The source data cases (n = 2237) were selected. By following the experimental design, data (n = 739) were obtained through artificial intelligence processing, including n = 480 in the group with traditional Chinese medicine treatment and n = 259 in the group without traditional Chinese medicine treatment. An evaluation was carried out using characteristics of patents' ICU stays and summated rating scales. Results There were statistical differences in 5 evaluation items (P < 0.05), and other comparison items also showed data with results favoring the outcomes in the intervention group using traditional Chinese medicine. Discussion. Traditional Chinese medicine as an alternative medical protocol effectively alleviates the stress and treatment fatigue brought about by modern medicine. Artificial intelligence data mining is a favorable medium to quantify this. Python will play a greater role in future clinical research because of its own characteristics.
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Mansourian M, Khademi S, Marateb HR. A Comprehensive Review of Computer-Aided Diagnosis of Major Mental and Neurological Disorders and Suicide: A Biostatistical Perspective on Data Mining. Diagnostics (Basel) 2021; 11:393. [PMID: 33669114 PMCID: PMC7996506 DOI: 10.3390/diagnostics11030393] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2021] [Revised: 02/13/2021] [Accepted: 02/17/2021] [Indexed: 02/07/2023] Open
Abstract
The World Health Organization (WHO) suggests that mental disorders, neurological disorders, and suicide are growing causes of morbidity. Depressive disorders, schizophrenia, bipolar disorder, Alzheimer's disease, and other dementias account for 1.84%, 0.60%, 0.33%, and 1.00% of total Disability Adjusted Life Years (DALYs). Furthermore, suicide, the 15th leading cause of death worldwide, could be linked to mental disorders. More than 68 computer-aided diagnosis (CAD) methods published in peer-reviewed journals from 2016 to 2021 were analyzed, among which 75% were published in the year 2018 or later. The Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) protocol was adopted to select the relevant studies. In addition to the gold standard, the sample size, neuroimaging techniques or biomarkers, validation frameworks, the classifiers, and the performance indices were analyzed. We further discussed how various performance indices are essential based on the biostatistical and data mining perspective. Moreover, critical information related to the Transparent reporting of a multivariable prediction model for individual prognosis or diagnosis (TRIPOD) guidelines was analyzed. We discussed how balancing the dataset and not using external validation could hinder the generalization of the CAD methods. We provided the list of the critical issues to consider in such studies.
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Affiliation(s)
- Mahsa Mansourian
- Department of Medical Physics, School of Medicine, Isfahan University of Medical Sciences, Isfahan 81746-73461, Iran;
| | - Sadaf Khademi
- Biomedical Engineering Department, Faculty of Engineering, University of Isfahan, Isfahan 8174-67344, Iran;
| | - Hamid Reza Marateb
- Biomedical Engineering Department, Faculty of Engineering, University of Isfahan, Isfahan 8174-67344, Iran;
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Tao X, Chi O, Delaney PJ, Li L, Huang J. Detecting depression using an ensemble classifier based on Quality of Life scales. Brain Inform 2021; 8:2. [PMID: 33590388 PMCID: PMC7884545 DOI: 10.1186/s40708-021-00125-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Accepted: 10/23/2020] [Indexed: 11/10/2022] Open
Abstract
Major depressive disorder (MDD) is an issue that affects 350 million people worldwide. Traditional approaches have been to identify depressive symptoms in datasets, but recently, research is beginning to explore the association between psychosocial factors such as those on the quality of life scale and mental well-being, which will lead to earlier diagnosis and prediction of MDD. In this research, an ensemble binary classifier is proposed to analyse health survey data against ground truth from the SF-20 Quality of Life scales. The classifier aims to improve the performance of machine learning techniques on large datasets and identify depressed cases based on associations between items on the QoL scale and mental illness by increasing predictive performance. On the experimental evaluation on the National Health and Nutrition Examination Survey (NHANES), the classifier demonstrated an F1 score of 0.976 in the prediction, without any incorrectly identified depression instances. Only about 4% of instances had been mistakenly classified into depressed cases, with a significant accuracy of 95.4% comparing to the result from PHQ-9 mental screen inventory. The presented ensemble binary classifier performed comparably better than each baseline algorithm in all measures and all experiments. We trained the ensemble model on the processed NHANES dataset, tested and evaluated the results of its performance against mental screen inventory and discussed the comparable predictions. Finally, we provided future research directions.
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Affiliation(s)
- Xiaohui Tao
- School of Sciences, University of Southern Queensland, Toowoomba, Australia.
| | - Oliver Chi
- Advanced Analytics Institute, University of Technology, Sydney, Australia
| | - Patrick J Delaney
- School of Sciences, University of Southern Queensland, Toowoomba, Australia
| | - Lin Li
- School of Computer Science and Technology, Wuhan University of Technology, Wuhan, 430070, China
| | - Jiajin Huang
- International WIC Institute, Beijing University of Technology, Beijing, 100124, China
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Resnik P, Foreman A, Kuchuk M, Musacchio Schafer K, Pinkham B. Naturally occurring language as a source of evidence in suicide prevention. Suicide Life Threat Behav 2021; 51:88-96. [PMID: 32914479 DOI: 10.1111/sltb.12674] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
We discuss computational language analysis as it pertains to suicide prevention research, with an emphasis on providing non-technologists with an understanding of key issues and, equally important, considering its relation to the broader enterprise of suicide prevention. Our emphasis here is on naturally occurring language in social media, motivated by its non-intrusive ability to yield high-value information that in the past has been largely unavailable to clinicians.
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Affiliation(s)
| | - April Foreman
- American Association of Suicidology, Washington, District of Columbia, USA
| | - Michelle Kuchuk
- Vibrant Emotional Health, New York, New York, USA.,National Suicide Prevention Lifeline, New York, New York, USA
| | | | - Beau Pinkham
- American Association of Suicidology, Washington, District of Columbia, USA.,National Suicide Prevention Lifeline, New York, New York, USA.,International Council for Helplines, Nashville, Tennessee, USA
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Kelly DL, Spaderna M, Hodzic V, Nair S, Kitchen C, Werkheiser AE, Powell MM, Liu F, Coppersmith G, Chen S, Resnik P. Blinded Clinical Ratings of Social Media Data are Correlated with In-Person Clinical Ratings in Participants Diagnosed with Either Depression, Schizophrenia, or Healthy Controls. Psychiatry Res 2020; 294:113496. [PMID: 33065372 DOI: 10.1016/j.psychres.2020.113496] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Accepted: 10/01/2020] [Indexed: 12/16/2022]
Abstract
This study investigates clinically valid signals about psychiatric symptoms in social media data, by rating severity of psychiatric symptoms in donated, de-identified Facebook posts and comparing to in-person clinical assessments. Participants with schizophrenia (N=8), depression (N=7), or who were healthy controls (N=8) also consented to the collection of their Facebook activity from three months before the in-person assessments to six weeks after this evaluation. Depressive symptoms were assessed in- person using the Montgomery-Åsberg Depression Rating Scale (MADRS), psychotic symptoms were assessed using the Brief Psychiatric Rating Scale (BPRS), and global functioning was assessed using the Community Assessment of Psychotic Experiences (CAPE-42). Independent raters (psychiatrists, non-psychiatrist mental health clinicians, and two staff members) rated depression, psychosis, and global functioning symptoms from the social media activity of deidentified participants. The correlations between in-person clinical ratings and blinded ratings based on social media data were evaluated. Significant correlations (and trends for significance in the mixed model controlling for multiple raters) were found for psychotic symptoms, global symptom ratings and depressive symptoms. Results like these, indicating the presence of clinically valid signal in social media, are an important step toward developing computational tools that could assist clinicians by providing additional data outside the context of clinical encounters.
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Affiliation(s)
- Deanna L Kelly
- University of Maryland Baltimore, School of Medicine, Baltimore, MD, USA.
| | - Max Spaderna
- University of Maryland Baltimore, School of Medicine, Baltimore, MD, USA
| | - Vedrana Hodzic
- University of Maryland Baltimore, School of Medicine, Baltimore, MD, USA
| | - Suraj Nair
- University of Maryland College Park, Department of Computer Science and Institute for Advanced Computer Studies, College Park, MD, USA
| | - Christopher Kitchen
- Center for Population Health IT, Johns Hopkins School of Public Health, Baltimore, MD, USA
| | - Anne E Werkheiser
- University of Maryland Baltimore, School of Medicine, Baltimore, MD, USA; Department of Psychology, Georgia State University, USA
| | | | - Fang Liu
- University of Maryland Baltimore, School of Medicine, Baltimore, MD, USA
| | | | - Shuo Chen
- University of Maryland Baltimore, School of Medicine, Baltimore, MD, USA
| | - Philip Resnik
- University of Maryland College Park, Department of Linguistics and Institute for Advanced Computer Studies, College Park, MD, USA
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Karajizadeh M, Nasiri M, Yadollahi M, Zolfaghari AH, Pakdam A. Mortality Prediction from Hospital-Acquired Infections in Trauma Patients Using an Unbalanced Dataset. Healthc Inform Res 2020; 26:284-294. [PMID: 33190462 PMCID: PMC7674815 DOI: 10.4258/hir.2020.26.4.284] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2020] [Revised: 09/17/2020] [Accepted: 10/23/2020] [Indexed: 11/23/2022] Open
Abstract
OBJECTIVES Machine learning has been widely used to predict diseases, and it is used to derive impressive knowledge in the healthcare domain. Our objective was to predict in-hospital mortality from hospital-acquired infections in trauma patients on an unbalanced dataset. METHODS Our study was a cross-sectional analysis on trauma patients with hospital-acquired infections who were admitted to Shiraz Trauma Hospital from March 20, 2017, to March 21, 2018. The study data was obtained from the surveillance hospital infection database. The data included sex, age, mechanism of injury, body region injured, severity score, type of intervention, infection day after admission, and microorganism causes of infections. We developed our mortality prediction model by random under-sampling, random over-sampling, clustering (k-mean)-C5.0, SMOTE-C5.0, ADASYN-C5.5, SMOTE-SVM, ADASYN-SVM, SMOTE-ANN, and ADASYN-ANN among hospital-acquired infections in trauma patients. All mortality predictions were conducted by IBM SPSS Modeler 18. RESULTS We studied 549 individuals with hospital-acquired infections in a trauma hospital in Shiraz during 2017 and 2018. Prediction accuracy before balancing of the dataset was 86.16%. In contrast, the prediction accuracy for the balanced dataset achieved by random under-sampling, random over-sampling, clustering (k-mean)-C5.0, SMOTE-C5.0, ADASYN-C5.5, and SMOTE-SVM was 70.69%, 94.74%, 93.02%, 93.66%, 90.93%, and 100%, respectively. CONCLUSIONS Our findings demonstrate that cleaning an unbalanced dataset increases the accuracy of the classification model. Also, predicting mortality by a clustered under-sampling approach was more precise in comparison to random under-sampling and random over-sampling methods.
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Affiliation(s)
- Mehrdad Karajizadeh
- School of Management & Information Sciences, Shiraz University of Medical Sciences, Shiraz, Iran
| | - Mahdi Nasiri
- School of Management & Information Sciences, Shiraz University of Medical Sciences, Shiraz, Iran
| | - Mahnaz Yadollahi
- Trauma Research Center, Shahid Rajaee (Emtiaz) Trauma Hospital, Shiraz University of Medical Sciences, Shiraz, Iran
| | | | - Ali Pakdam
- School of Management & Information Sciences, Shiraz University of Medical Sciences, Shiraz, Iran
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Muro N, Larburu N, Torres J, Kerexeta J, Artola G, Arrue M, Macia I, Seroussi B. Architecture for a Multimodal and Domain-Independent Clinical Decision Support System Software Development Kit. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2019:1399-1404. [PMID: 31946154 DOI: 10.1109/embc.2019.8856459] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Digitalization of the decision-making process in healthcare has been promoted to improve clinical performance and patient outcomes. The implementation of Clinical Practice Guidelines (CPGs) using Clinical Decision Support Systems (CDSSs) is widely developed in order to achieve this purpose within clinical information systems. Nevertheless, due to several factors such as (i) incompleteness of CPG clinical knowledge, (ii) out-of-date contents, or (iii) knowledge gaps for specific clinical situations, guideline-based CDSSs may not completely satisfy clinical needs. The proposed architecture aims to cope with guideline knowledge gaps and pitfalls by harmonizing different modalities of decision support (i.e. guideline-based CDSSs, experience-based CDSSs, and data mining-based CDSSs) and information sources (i.e. CPGs and patient data) to provide the most complete, personalized, and up-to-date propositions to manage patients. We have developed a decisional event structure to retrieve all the information related to the decision-making process. This structure allows the tracking, computation, and evaluation of all the decisions made over time based on patient clinical outcomes. Finally, different user-friendly and easy-to-use authoring tools have been implemented within the proposed architecture to integrate the role of clinicians in the whole process of knowledge generation and validation. A use case based on Breast Cancer management is presented to illustrate the performance of the implemented architecture.
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Identifying reproductive-aged women with physical and sensory disabilities in administrative health data: A systematic review. Disabil Health J 2020; 13:100909. [PMID: 32139320 DOI: 10.1016/j.dhjo.2020.100909] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Revised: 02/05/2020] [Accepted: 02/11/2020] [Indexed: 01/21/2023]
Abstract
BACKGROUND Women with disabilities experience significant health disparities. A barrier to progress in addressing these disparities is the lack of population-based data on their health outcomes, which are needed to plan health care delivery systems. Administrative health data are increasingly being used to measure the health of entire populations, but these data may only capture impairment and not activity and participation restrictions. OBJECTIVE We conducted a systematic review to identify and appraise existing literature on the development and validation of algorithms to identify reproductive-aged women with physical and sensory disabilities in administrative health data. METHODS We searched Medline, EMBASE, CINAHL, PsycINFO, and Scopus from inception to April 2019 for studies of the development and/or validation of algorithms using diagnostic, procedural, or prescription codes to identify physical and sensory disabilities in administrative health data. Study and algorithm characteristics were extracted and quality was assessed using standardized instruments. RESULTS Of 14,073 articles initially identified, we reviewed 6 articles representing 2 unique algorithms. One algorithm aimed to correlate diagnoses, procedure codes, and prescriptions with ability to access routine care as an indicator of functional limitation. The other algorithm used diagnostic and procedure codes to identify use of mobility-assistive devices to measure functional limitation. Only one algorithm was validated against self-reported disability. CONCLUSIONS Our findings underscore the need to strengthen current methods to identify disability in administrative health data, including linkage with other sources of information on functional limitations, so that population-based data can be used to optimize health care for women with disabilities.
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Yang H, Bath PA. The Use of Data Mining Methods for the Prediction of Dementia: Evidence From the English Longitudinal Study of Aging. IEEE J Biomed Health Inform 2019; 24:345-353. [PMID: 31180874 DOI: 10.1109/jbhi.2019.2921418] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Dementia in older age is a major health concern with the increase in the aging population. Preventive measures to prevent or delay dementia symptoms are of utmost importance. In this study, a large and wide variety of factors from multiple domains were investigated using a large nationally representative sample of older people from the English Longitudinal Study of Ageing. Seven machine learning algorithms were implemented to build predictive models for performance comparison. A simple model ensemble approach was used to combine the prediction results of individual base models to further improve predictive power. A series of important factors in each domain area were identified. The findings from this study provide new evidence on factors that are associated with the dementia in later life. This information will help our understanding of potential risk factors for dementia and identify warning signs of the early stages of dementia. Longitudinal research is required to establish which factors may be causative and which factors may be a consequence of dementia.
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Triantafyllidis AK, Tsanas A. Applications of Machine Learning in Real-Life Digital Health Interventions: Review of the Literature. J Med Internet Res 2019; 21:e12286. [PMID: 30950797 PMCID: PMC6473205 DOI: 10.2196/12286] [Citation(s) in RCA: 108] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2018] [Revised: 01/07/2019] [Accepted: 01/26/2019] [Indexed: 12/21/2022] Open
Abstract
Background Machine learning has attracted considerable research interest toward developing smart digital health interventions. These interventions have the potential to revolutionize health care and lead to substantial outcomes for patients and medical professionals. Objective Our objective was to review the literature on applications of machine learning in real-life digital health interventions, aiming to improve the understanding of researchers, clinicians, engineers, and policy makers in developing robust and impactful data-driven interventions in the health care domain. Methods We searched the PubMed and Scopus bibliographic databases with terms related to machine learning, to identify real-life studies of digital health interventions incorporating machine learning algorithms. We grouped those interventions according to their target (ie, target condition), study design, number of enrolled participants, follow-up duration, primary outcome and whether this had been statistically significant, machine learning algorithms used in the intervention, and outcome of the algorithms (eg, prediction). Results Our literature search identified 8 interventions incorporating machine learning in a real-life research setting, of which 3 (37%) were evaluated in a randomized controlled trial and 5 (63%) in a pilot or experimental single-group study. The interventions targeted depression prediction and management, speech recognition for people with speech disabilities, self-efficacy for weight loss, detection of changes in biopsychosocial condition of patients with multiple morbidity, stress management, treatment of phantom limb pain, smoking cessation, and personalized nutrition based on glycemic response. The average number of enrolled participants in the studies was 71 (range 8-214), and the average follow-up study duration was 69 days (range 3-180). Of the 8 interventions, 6 (75%) showed statistical significance (at the P=.05 level) in health outcomes. Conclusions This review found that digital health interventions incorporating machine learning algorithms in real-life studies can be useful and effective. Given the low number of studies identified in this review and that they did not follow a rigorous machine learning evaluation methodology, we urge the research community to conduct further studies in intervention settings following evaluation principles and demonstrating the potential of machine learning in clinical practice.
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Affiliation(s)
- Andreas K Triantafyllidis
- Information Technologies Institute, Centre for Research and Technology Hellas, Thessaloniki, Greece.,Lab of Computing, Medical Informatics and Biomedical Imaging Technologies, School of Medicine, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Athanasios Tsanas
- Usher Institute of Population Health Sciences and Informatics, Medical School, University of Edinburgh, Edinburgh, United Kingdom.,Mathematical Institute, University of Oxford, Oxford, United Kingdom
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Alegría M, NeMoyer A, Falgas I, Wang Y, Alvarez K. Social Determinants of Mental Health: Where We Are and Where We Need to Go. Curr Psychiatry Rep 2018; 20:95. [PMID: 30221308 PMCID: PMC6181118 DOI: 10.1007/s11920-018-0969-9] [Citation(s) in RCA: 363] [Impact Index Per Article: 51.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
PURPOSE OF REVIEW The present review synthesizes recent literature on social determinants and mental health outcomes and provides recommendations for how to advance the field. We summarize current studies related to changes in the conceptualization of social determinants, how social determinants impact mental health, what we have learned from social determinant interventions, and new methods to collect, use, and analyze social determinant data. RECENT FINDINGS Recent research has increasingly focused on interactions between multiple social determinants, interventions to address upstream causes of mental health challenges, and use of simulation models to represent complex systems. However, methodological challenges and inconsistent findings prevent a definitive understanding of which social determinants should be addressed to improve mental health, and within what populations these interventions may be most effective. Recent advances in strategies to collect, evaluate, and analyze social determinants suggest the potential to better appraise their impact and to implement relevant interventions.
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Affiliation(s)
- Margarita Alegría
- Disparities Research Unit, Department of Medicine, Massachusetts General Hospital, 50 Staniford Street, Suite 830, Boston, MA, 02114, USA. .,Department of Psychiatry, Harvard Medical School, Boston, MA, USA.
| | - Amanda NeMoyer
- Disparities Research Unit, Department of Medicine, Massachusetts General Hospital,Department of Health Care Policy, Harvard Medical School
| | - Irene Falgas
- Disparities Research Unit, Department of Medicine, Massachusetts General Hospital
| | - Ye Wang
- Disparities Research Unit, Department of Medicine, Massachusetts General Hospital
| | - Kiara Alvarez
- Disparities Research Unit, Department of Medicine, Massachusetts General Hospital,Department of Psychiatry, Harvard Medical School
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