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Asif S, Kim N, Jan R, Asaf S, Lubna, Farooq M, Khan W, Khan Z, Kim EG, Jang YH, Park JR, Zhao DD, Kim KM. Determining arsenic stress tolerance genes in rice (Oryza sativa L.) via genomic insights and QTL mapping with double haploid lines. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 214:108941. [PMID: 39029307 DOI: 10.1016/j.plaphy.2024.108941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2024] [Revised: 07/12/2024] [Accepted: 07/14/2024] [Indexed: 07/21/2024]
Abstract
Arsenic, a hazardous heavy metal with potent carcinogenic properties, significantly affects key rice-producing regions worldwide. In this study, we present a quantitative trait locus (QTL) mapping investigation designed to identify candidate genes responsible for conferring tolerance to arsenic toxicity in rice (Oryza sativa L.) during the seedling stage. This study identified 17 QTLs on different chromosomes, including qCHC-1 and qCHC-3 on chromosome 1 and 3 related to chlorophyll content and qRFW-12 on chromosome 12 related to root fresh weight. Gene expression analysis revealed eight candidate genes exhibited significant upregulation in the resistant lines, OsGRL1, OsDjB1, OsZIP2, OsMATE12, OsTRX29, OsMADS33, OsABCG29, and OsENODL24. These genes display sequence alignment and phylogenetic tree similarities with other species and engaging in protein-protein interactions with significant proteins. Advanced gene-editing techniques such as CRISPR-Cas9 to precisely target and modify the candidate genes responsible for arsenic tolerance will be explore. This approach may expedite the development of arsenic-resistant rice cultivars, which are essential for ensuring food security in regions affected by arsenic-contaminated soil and water.
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Affiliation(s)
- Saleem Asif
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Daegu, 41566, Republic of Korea
| | - Nari Kim
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Daegu, 41566, Republic of Korea
| | - Rahmatullah Jan
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Daegu, 41566, Republic of Korea; Coastal Agriculture Research Institute, Kyungpook National University, Daegu, Republic of Korea
| | - Sajjad Asaf
- Natural and Medical Science Research Center, University of Nizwa, Nizwa, Oman
| | - Lubna
- Natural and Medical Science Research Center, University of Nizwa, Nizwa, Oman
| | - Muhammad Farooq
- Agriculture Biology, College of Agriculture & Life Sciences, Jeonbuk National University, Jeonju, Republic of Korea
| | - Waleed Khan
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Daegu, 41566, Republic of Korea
| | - Zakirullah Khan
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Daegu, 41566, Republic of Korea
| | - Eun-Gyeong Kim
- National Agrobiodiversity Center, National Academy of Agricultural Science, Rural Development Administration, Jeonju, 54874, Republic of Korea
| | - Yoon-Hee Jang
- Gene Engineering Division, National Institute of Agricultural Sciences, RDA, Jeonju, 54874, Republic of Korea
| | - Jae Ryoung Park
- Coastal Agriculture Research Institute, Kyungpook National University, Daegu, Republic of Korea; Crop Breeding Division, National Institute of Crop Science, Rural Development Administration, Wanju, 55365, Republic of Korea
| | - Dan Dan Zhao
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Daegu, 41566, Republic of Korea; Crop Foundation Research Division, National Institute of Crop Science, Rural Development Administration, Wanju, 55365, Republic of Korea
| | - Kyung-Min Kim
- Department of Applied Biosciences, Graduate School, Kyungpook National University, Daegu, 41566, Republic of Korea; Coastal Agriculture Research Institute, Kyungpook National University, Daegu, Republic of Korea.
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Ferrari M, Marieschi M, Cozza R, Torelli A. Phytochelatin Synthase: An In Silico Comparative Analysis in Cyanobacteria and Eukaryotic Microalgae. PLANTS (BASEL, SWITZERLAND) 2024; 13:2165. [PMID: 39124283 PMCID: PMC11314372 DOI: 10.3390/plants13152165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Revised: 07/09/2024] [Accepted: 08/01/2024] [Indexed: 08/12/2024]
Abstract
Phytochelatins (PCs) are small cysteine-rich peptides involved in metal detoxification, not genetically encoded but enzymatically synthesized by phytochelatin synthases (PCSs) starting from glutathione. The constitutive PCS expression even in the absence of metal contamination, the wide phylogenetic distribution and the similarity between PCSs and the papain-type cysteine protease catalytic domain suggest a wide range of functions for PCSs. These proteins, widely studied in land plants, have not been fully analyzed in algae and cyanobacteria, although these organisms are the first to cope with heavy-metal stress in aquatic environments and can be exploited for phytoremediation. To fill this gap, we compared the features of the PCS proteins of different cyanobacterial and algal taxa by phylogenetic linkage. The analyzed sequences fall into two main, already known groups of PCS-like proteins. Contrary to previous assumptions, they are not classed as prokaryotic and eukaryotic sequences, but rather as sequences characterized by the alternative presence of asparagine and aspartic/glutamic acid residues in proximity of the catalytic cysteine. The presence of these enzymes with peculiar features suggests differences in their post-translational regulation related to cell/environmental requirements or different cell functions rather than to differences due to their belonging to different phylogenetic taxa.
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Affiliation(s)
- Michele Ferrari
- Department of Biology, Ecology and Earth Science, University of Calabria, Arcavacata di Rende, 87036 Cosenza, Italy; (M.F.); (R.C.)
| | - Matteo Marieschi
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Viale delle Scienze 11/A, 43124 Parma, Italy;
| | - Radiana Cozza
- Department of Biology, Ecology and Earth Science, University of Calabria, Arcavacata di Rende, 87036 Cosenza, Italy; (M.F.); (R.C.)
| | - Anna Torelli
- Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Viale delle Scienze 11/A, 43124 Parma, Italy;
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Choudry MW, Riaz R, Nawaz P, Ashraf M, Ijaz B, Bakhsh A. CRISPR-Cas9 mediated understanding of plants' abiotic stress-responsive genes to combat changing climatic patterns. Funct Integr Genomics 2024; 24:132. [PMID: 39078500 DOI: 10.1007/s10142-024-01405-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Revised: 07/01/2024] [Accepted: 07/04/2024] [Indexed: 07/31/2024]
Abstract
Multiple abiotic stresses like extreme temperatures, water shortage, flooding, salinity, and exposure to heavy metals are confronted by crop plants with changing climatic patterns. Prolonged exposure to these adverse environmental conditions leads to stunted plant growth and development with significant yield loss in crops. CRISPR-Cas9 genome editing tool is being frequently employed to understand abiotic stress-responsive genes. Noteworthy improvements in CRISPR-Cas technology have been made over the years, including upgradation of Cas proteins fidelity and efficiency, optimization of transformation protocols for different crop species, base and prime editing, multiplex gene-targeting, transgene-free editing, and graft-based heritable CRISPR-Cas9 approaches. These developments helped to improve the knowledge of abiotic stress tolerance in crops that could potentially be utilized to develop knock-out varieties and over-expressed lines to tackle the adverse effects of altered climatic patterns. This review summarizes the mechanistic understanding of heat, drought, salinity, and metal stress-responsive genes characterized so far using CRISPR-Cas9 and provides data on potential candidate genes that can be exploited by modern-day biotechnological tools to develop transgene-free genome-edited crops with better climate adaptability. Furthermore, the importance of early-maturing crop varieties to withstand abiotic stresses is also discussed in this review.
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Affiliation(s)
| | - Rabia Riaz
- Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan
| | - Pashma Nawaz
- Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan
| | - Maria Ashraf
- Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan
| | - Bushra Ijaz
- Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan.
| | - Allah Bakhsh
- Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan.
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Rob MM, Akhter D, Islam T, Bhattacharjya DK, Shoaib Khan MS, Islam F, Chen J. Copper stress in rice: Perception, signaling, bioremediation and future prospects. JOURNAL OF PLANT PHYSIOLOGY 2024; 302:154314. [PMID: 39033671 DOI: 10.1016/j.jplph.2024.154314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 07/10/2024] [Accepted: 07/12/2024] [Indexed: 07/23/2024]
Abstract
Copper (Cu) is an indispensable micronutrient for plants, animals, and microorganisms and plays a vital role in different physiological processes. However, excessive Cu accumulation in agricultural soil, often through anthropogenic action, poses a potential risk to plant health and crop productivity. This review article provided a comprehensive overview of the available information regarding Cu dynamics in agricultural soils, major sources of Cu contamination, factors influencing its mobility and bioavailability, and mechanisms of Cu uptake and translocation in rice plants. This review examined the impact of Cu toxicity on the germination, growth, and photosynthesis of rice plants. It also highlighted molecular mechanisms underlying Cu stress signaling and the plant defense strategy, involving chelation, compartmentalization, and antioxidant responses. This review also identified significant areas that need further research, such as Cu uptake mechanism in rice, Cu signaling process, and the assessment of Cu-polluted paddy soil and rice toxicity under diverse environmental conditions. The development of rice varieties with reduced Cu accumulation through comprehensive breeding programs is also necessary. Regulatory measures, fungicide management, plant selection, soil and environmental investigation are recommended to prevent Cu buildup in agricultural lands to achieve sustainable agricultural goals.
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Affiliation(s)
- Md Mahfuzur Rob
- Department of Horticulture, Faculty of Agriculture, Sylhet Agricultural University, Sylhe, 3100, Bangladesh
| | - Delara Akhter
- Department of Genetics and Plant Breeding, Sylhet Agricultural University, Sylhet, 3100, Bangladesh
| | - Tariqul Islam
- Department of Agricultural Construction and Environmental Engineering, Sylhet Agricultural University, Sylhet, 3100, Bangladesh
| | - Debu Kumar Bhattacharjya
- Department of Biochemistry, Sher-e-Bangla Agricultural University, Sherebangla Nagar, Dhaka, 1207, Bangladesh
| | | | - Faisal Islam
- International Genome Center, Jiangsu University, Zhenjiang, 212013, China.
| | - Jian Chen
- International Genome Center, Jiangsu University, Zhenjiang, 212013, China.
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Miao S, Lu J, Zhang G, Jiang J, Li P, Qian Y, Wang W, Xu J, Zhang F, Zhao X. Candidate Genes and Favorable Haplotypes Associated with Iron Toxicity Tolerance in Rice. Int J Mol Sci 2024; 25:6970. [PMID: 39000075 PMCID: PMC11241266 DOI: 10.3390/ijms25136970] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Revised: 06/15/2024] [Accepted: 06/21/2024] [Indexed: 07/16/2024] Open
Abstract
Iron (Fe) toxicity is a major issue adversely affecting rice production worldwide. Unfortunately, the physiological and genetic mechanisms underlying Fe toxicity tolerance in rice remain relatively unknown. In this study, we conducted a genome-wide association study using a diverse panel consisting of 551 rice accessions to identify genetic mechanisms and candidate genes associated with Fe toxicity tolerance. Of the 29 quantitative trait loci (QTL) for Fe toxicity tolerance detected on chromosomes 1, 2, 5, and 12, five (qSH_Fe5, qSFW_Fe2.3, qRRL5.1, qRSFW1.1, and qRSFW12) were selected to identify candidate genes according to haplotype and bioinformatics analyses. The following five genes were revealed as promising candidates: LOC_Os05g40160, LOC_Os05g40180, LOC_Os12g36890, LOC_Os12g36900, and LOC_Os12g36940. The physiological characteristics of rice accessions with contrasting Fe toxicity tolerance reflected the importance of reactive oxygen species-scavenging antioxidant enzymes and Fe homeostasis for mitigating the negative effects of Fe toxicity on rice. Our findings have clarified the genetic and physiological mechanisms underlying Fe toxicity tolerance in rice. Furthermore, we identified valuable genetic resources for future functional analyses and the development of Fe toxicity-tolerant rice varieties via marker-assisted selection.
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Affiliation(s)
- Siyu Miao
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China; (S.M.); (J.L.); (J.J.); (P.L.); (Y.Q.); (W.W.); (J.X.)
| | - Jingbing Lu
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China; (S.M.); (J.L.); (J.J.); (P.L.); (Y.Q.); (W.W.); (J.X.)
| | - Guogen Zhang
- College of Agronomy, Anhui Agricultural University, Hefei 230036, China;
| | - Jing Jiang
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China; (S.M.); (J.L.); (J.J.); (P.L.); (Y.Q.); (W.W.); (J.X.)
| | - Pingping Li
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China; (S.M.); (J.L.); (J.J.); (P.L.); (Y.Q.); (W.W.); (J.X.)
| | - Yukang Qian
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China; (S.M.); (J.L.); (J.J.); (P.L.); (Y.Q.); (W.W.); (J.X.)
| | - Wensheng Wang
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China; (S.M.); (J.L.); (J.J.); (P.L.); (Y.Q.); (W.W.); (J.X.)
- College of Agronomy, Anhui Agricultural University, Hefei 230036, China;
| | - Jianlong Xu
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China; (S.M.); (J.L.); (J.J.); (P.L.); (Y.Q.); (W.W.); (J.X.)
| | - Fan Zhang
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China; (S.M.); (J.L.); (J.J.); (P.L.); (Y.Q.); (W.W.); (J.X.)
- College of Agronomy, Anhui Agricultural University, Hefei 230036, China;
| | - Xiuqin Zhao
- State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100081, China; (S.M.); (J.L.); (J.J.); (P.L.); (Y.Q.); (W.W.); (J.X.)
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Ekta, Maiti MK. Rice Big Grain1 improves grain yield in ectopically expressing rice and heterologously expressing tobacco plants. PLANT MOLECULAR BIOLOGY 2024; 114:73. [PMID: 38874648 DOI: 10.1007/s11103-024-01472-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2024] [Accepted: 05/26/2024] [Indexed: 06/15/2024]
Abstract
Functional genomics through transgenesis has provided faster and more reliable methods for identifying, characterizing, and utilizing genes or quantitative trait loci linked to agronomic traits to target yield. The present study explored the role of Big Grain1 (BG1) gene of rice (Oryza sativa L.) in yield improvement of crop plants. We aimed to identify the genetic variation of OsBG1 in various indica rice cultivars by studying the allelic polymorphism of the gene, while also investigating the gene's potential to increase crop yield through the transgenic approach. Our study reports the presence of an extra 393 bp sequence having two 6 bp enhancer elements in the 3' regulatory sequence of OsBG1 in the large-grain cultivar IR64 but not in the small-grain cultivar Badshahbhog. A single copy of the OsBG1 gene in both the cultivars and a 4.1-fold higher expression of OsBG1 in IR64 than in Badshahbhog imply that the grain size is positively correlated with the level of OsBG1 expression in rice. The ectopic expression of OsBG1 under the endosperm-specific glutelin C promoter in Badshahbhog enhanced the flag leaf length, panicle weight, and panicle length by an average of 33.2%, 33.7%, and 30.5%, respectively. The length of anthers, spikelet fertility, and grain yield per plant increased in transgenic rice lines by an average of 27.5%, 8.3%, and 54.4%, respectively. Heterologous expression of OsBG1 under the constitutive 2xCaMV35S promoter improved the number of seed pods per plant and seed yield per plant in transgenic tobacco lines by an average of 2.2-fold and 2.6-fold, respectively. Improving crop yield is crucial to ensure food security and socio-economic stability, and identifying suitable genetic factor is the essential step towards this endeavor. Our findings suggest that the OsBG1 gene is a promising candidate for improving the grain yield of monocot and dicot plant systems by molecular breeding and genetic engineering.
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Affiliation(s)
- Ekta
- Department of Bioscience and Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
| | - Mrinal K Maiti
- Department of Bioscience and Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India.
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Roy S, Hazarika K, Sen A, Dasgupta S, Bhattacharya S. Understanding phloem's role in long-distance transport and accumulation of arsenic (As) in rice: toward low-As-accumulating grain development. PLANTA 2024; 259:141. [PMID: 38695915 DOI: 10.1007/s00425-024-04422-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Accepted: 04/23/2024] [Indexed: 05/23/2024]
Abstract
MAIN CONCLUSION This review highlights the roles of phloem in the long-distance transport and accumulation of As in rice plants, facilitating the formulation of new strategies to reduce the grain As content. Rice is a staple diet for a significant proportion of the global population. As toxicity is a major issue affecting the rice productivity and quality worldwide. Phloem tissues of rice plants play vital roles in As speciation, long-distance transport, and unloading, thereby controlling the As accumulation in rice grains. Phloem transport accounts for a significant proportion of As transport to grains, ranging from 54 to 100% depending on the species [inorganic arsenate (As(V)), arsenite (As(III)), or organic dimethylarsinic acid (DMA(V)]. However, the specific mechanism of As transport through phloem leading to its accumulation in grains remains unknown. Therefore, understanding the molecular mechanism of phloem-mediated As transport is necessary to determine the roles of phloem in long-distance As transport and subsequently reduce the grain As content via biotechnological interventions. This review discusses the roles of phloem tissues in the long-distance transport and accumulation of As in rice grains. This review also highlights the biotechnological approaches using critical genetic factors involved in nodal accumulation, vacuolar sequestration, and cellular efflux of As in phloem- or phloem-associated tissues. Furthermore, the limitations of existing transgenic techniques are outlined to facilitate the formulation of novel strategies for the development of rice with reduced grain As content.
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Affiliation(s)
- Sanket Roy
- Amity Institute of Biotechnology, Amity University Kolkata, Plot No: 36, 37 and 38, Major Arterial Road, Action Area II, Kadampukur Village, Rajarhat, Newtown, Kolkata, West Bengal, 700135, India
| | - Kabyashree Hazarika
- Amity Institute of Biotechnology, Amity University Kolkata, Plot No: 36, 37 and 38, Major Arterial Road, Action Area II, Kadampukur Village, Rajarhat, Newtown, Kolkata, West Bengal, 700135, India
| | - Anuska Sen
- Amity Institute of Biotechnology, Amity University Kolkata, Plot No: 36, 37 and 38, Major Arterial Road, Action Area II, Kadampukur Village, Rajarhat, Newtown, Kolkata, West Bengal, 700135, India
| | | | - Surajit Bhattacharya
- Amity Institute of Biotechnology, Amity University Kolkata, Plot No: 36, 37 and 38, Major Arterial Road, Action Area II, Kadampukur Village, Rajarhat, Newtown, Kolkata, West Bengal, 700135, India.
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Qiu CW, Richmond M, Ma Y, Zhang S, Liu W, Feng X, Ahmed IM, Wu F. Melatonin enhances cadmium tolerance in rice via long non-coding RNA-mediated modulation of cell wall and photosynthesis. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:133251. [PMID: 38141306 DOI: 10.1016/j.jhazmat.2023.133251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 11/28/2023] [Accepted: 12/11/2023] [Indexed: 12/25/2023]
Abstract
In plants, melatonin (MLT) is a versatile signaling molecule involved in promoting plant development and mitigating the damage caused by heavy metal exposure. Long non-coding RNAs (lncRNAs) are essential components in the plant's response to various abiotic stress, functioning within the gene regulatory network. Here, a hydroponic experiment was performed to explore the involvement of lncRNAs in MLT-mediated amelioration of cadmium (Cd) toxicity in rice plants. The results demonstrated that applying 250 mg L-1 MLT in a solution containing 10 μM Cd leads to an effective reduction of 30.0% in shoot Cd concentration. Remarkably, the treatment resulted in a 21.2% improvement in potassium and calcium uptake, a 164.5% enhancement in net photosynthetic rate, and a 33.2% decrease in malondialdehyde accumulation, resulting increases in plant height, root length, and biomass accumulation. Moreover, a transcriptome analysis revealed 2510 differentially expressed transcripts, including the Cd transporters (-3.82-fold downregulated) and the Cd tolerance-associated genes (1.24-fold upregulated). Notably, regulatory network prediction uncovered 6 differentially expressed lncRNAs that act as competitive endogenous RNA or in RNA complex interactions. These key lncRNAs regulate the expression of target genes that are involved in pectin and cellulose metabolism, scavenging of reactive oxygen species, salicylic acid-mediated defense response, and biosynthesis of brassinosteroids, which ultimately modify the cell wall for Cd adsorption, safeguard photosynthesis, and control hormone signaling to reduce Cd toxicity. Our results unveiled a crucial lncRNA-mediated mechanism underlying MLT's role in Cd detoxification in rice plants, providing potential applications in agricultural practices and environmental remediation.
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Affiliation(s)
- Cheng-Wei Qiu
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China; Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China
| | - Marvin Richmond
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China
| | - Yue Ma
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China
| | - Shuo Zhang
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China; Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops, Yangzhou University, Yangzhou 225009, China
| | - Wenxing Liu
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China; College of Agronomy, Qingdao Agricultural University, Qingdao 266109, China
| | - Xue Feng
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China; College of Agronomy, Qingdao Agricultural University, Qingdao 266109, China
| | - Imrul Mosaddek Ahmed
- Plant Biotechnology Laboratory, Center for Viticulture & Small Fruit Research, Florida A&M University, FL 32317, USA
| | - Feibo Wu
- Department of Agronomy, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China.
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Li Y, Liu M, Wang H, Li C, Zhang Y, Dong Z, Fu C, Ye Y, Wang F, Chen X, Wang Z. Effects of different phosphorus fertilizers on cadmium absorption and accumulation in rice under low-phosphorus and rich-cadmium soil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:11898-11911. [PMID: 38225492 DOI: 10.1007/s11356-024-31986-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 01/08/2024] [Indexed: 01/17/2024]
Abstract
Rice is the main food crops with the higher capacity for cadmium (Cd) uptake, necessitating the urgent need for remediation measures to address Cd in paddy soil. Reasonable agronomic methods are convenient and favorable for fixing the issue. In this study, a pot experiment was employed to evaluate the effects of two foliar (NaH2PO4, SDP; KH2PO4, PDP) and two solid phosphate fertilizers (double-superphosphate, DSP; calcium-magnesium phosphate, CMP) on uptake and remobilization of Cd in rice plants under the low-P and rich-Cd soil. The results revealed that these four phosphorus fertilizer significantly down-regulated the relative expression of OsNRAMP5 involved in Cd absorption, while up-regulated OsPCS1 expression and increased distribution of Cd into the cell wall in roots. Furthermore, phosphorus fertilizer resulted in a significant decrease in the relative expression of OsLCT1 in stems and OsLCD in leaves, decreased the transfer factor of Cd from shoots to grains, and ulterior reduced the Cd accumulation in three protein components of globulin, albumin, and glutelin, making the average Cd concentration of brown rice decreased by 82.96%. These results comprehensively indicate that in situations with similar soil backgrounds, the recommended application of solid CMP and foliar PDP can alleviate the toxicity of Cd by reducing its absorption and remobilization.
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Affiliation(s)
- Yang Li
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huai'an, 223003, China
| | - Mingsong Liu
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huai'an, 223003, China
| | - Huicong Wang
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huai'an, 223003, China
| | - Chunhui Li
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huai'an, 223003, China
| | - Ying Zhang
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huai'an, 223003, China
| | - Zhiyao Dong
- Jilin Provincial Key Laboratory of Plant Resource Science and Green Production, Jilin Normal University, Siping, 136000, China
| | - Chuanlan Fu
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huai'an, 223003, China
| | - Yuxiu Ye
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huai'an, 223003, China
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, Huai'an, 223003, China
| | - Feibing Wang
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huai'an, 223003, China
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, Huai'an, 223003, China
| | - Xinhong Chen
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huai'an, 223003, China
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, Huai'an, 223003, China
| | - Zunxin Wang
- School of Life Science and Food Engineering, Huaiyin Institute of Technology, Huai'an, 223003, China.
- Jiangsu Provincial Agricultural Green and Low Carbon Production Technology Engineering Research Center, Huai'an, 223003, China.
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Chaudhary D, Jeena AS, Rohit, Gaur S, Raj R, Mishra S, Kajal, Gupta OP, Meena MR. Advances in RNA Interference for Plant Functional Genomics: Unveiling Traits, Mechanisms, and Future Directions. Appl Biochem Biotechnol 2024:10.1007/s12010-023-04850-x. [PMID: 38175411 DOI: 10.1007/s12010-023-04850-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/19/2023] [Indexed: 01/05/2024]
Abstract
RNA interference (RNAi) is a conserved molecular mechanism that plays a critical role in post-transcriptional gene silencing across diverse organisms. This review delves into the role of RNAi in plant functional genomics and its applications in crop improvement, highlighting its mechanistic insights and practical implications. The review begins with the foundational discovery of RNAi's mechanism, tracing its origins from petunias to its widespread presence in various organisms. Various classes of regulatory non-coding small RNAs, including siRNAs, miRNAs, and phasiRNAs, have been uncovered, expanding the scope of RNAi-mediated gene regulation beyond conventional understanding. These RNA classes participate in intricate post-transcriptional and epigenetic processes that influence gene expression. In the context of crop enhancement, RNAi has emerged as a powerful tool for understanding gene functions. It has proven effective in deciphering gene roles related to stress resistance, metabolic pathways, and more. Additionally, RNAi-based approaches hold promise for integrated pest management and sustainable agriculture, contributing to global efforts in food security. This review discusses RNAi's diverse applications, such as modifying plant architecture, extending shelf life, and enhancing nutritional content in crops. The challenges and future prospects of RNAi technology, including delivery methods and biosafety concerns, are also explored. The global landscape of RNAi research is highlighted, with significant contributions from regions such as China, Europe, and North America. In conclusion, RNAi remains a versatile and pivotal tool in modern plant research, offering novel avenues for understanding gene functions and improving crop traits. Its integration with other biotechnological approaches such as gene editing holds the potential to shape the future of agriculture and sustainable food production.
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Affiliation(s)
- Divya Chaudhary
- Department of Genetics and Plant Breeding, College of Agriculture, G B Pant University of Agriculture and Technology, Pantnagar, 263145, Uttarakhand, India
| | - Anand Singh Jeena
- Department of Genetics and Plant Breeding, College of Agriculture, G B Pant University of Agriculture and Technology, Pantnagar, 263145, Uttarakhand, India.
| | - Rohit
- Department of Genetics and Plant Breeding, College of Agriculture, G B Pant University of Agriculture and Technology, Pantnagar, 263145, Uttarakhand, India
| | - Sonali Gaur
- Department of Genetics and Plant Breeding, College of Agriculture, G B Pant University of Agriculture and Technology, Pantnagar, 263145, Uttarakhand, India
| | - Rishi Raj
- ICAR- Sugarcane Breeding Institute-Regional Centre, Karnal, 132001, Haryana, India
| | | | - Kajal
- Department of Biotechnology, Chandigarh University, Chandigarh, 140143, India
| | - Om Prakash Gupta
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, 132001, Haryana, India.
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Gautam N, Tiwari M, Kidwai M, Dutta P, Chakrabarty D. Functional characterization of rice metallothionein OsMT-I-Id: Insights into metal binding and heavy metal tolerance mechanisms. JOURNAL OF HAZARDOUS MATERIALS 2023; 458:131815. [DOI: https:/doi.org/10.1016/j.jhazmat.2023.131815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/27/2023]
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12
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Geng A, Lian W, Wang X, Chen G. Regulatory Mechanisms Underlying Arsenic Uptake, Transport, and Detoxification in Rice. Int J Mol Sci 2023; 24:11031. [PMID: 37446207 DOI: 10.3390/ijms241311031] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 06/30/2023] [Accepted: 07/02/2023] [Indexed: 07/15/2023] Open
Abstract
Arsenic (As) is a metalloid environmental pollutant ubiquitous in nature that causes chronic and irreversible poisoning to humans through its bioaccumulation in the trophic chain. Rice, the staple food crop for 350 million people worldwide, accumulates As more easily compared to other cereal crops due to its growth characteristics. Therefore, an in-depth understanding of the molecular regulatory mechanisms underlying As uptake, transport, and detoxification in rice is of great significance to solving the issue of As bioaccumulation in rice, improving its quality and safety and protecting human health. This review summarizes recent studies on the molecular mechanisms of As toxicity, uptake, transport, redistribution, regulation, and detoxification in rice. It aims to provide novel insights and approaches for preventing and controlling As bioaccumulation in rice plants, especially reducing As accumulation in rice grains.
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Affiliation(s)
- Anjing Geng
- Institute of Quality Standard and Monitoring Technology for Agro-Products of Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China
- Key Laboratory of Testing and Evaluation for Agro-Product Safety and Quality, Ministry of Agriculture and Rural Affairs, Guangzhou 510640, China
- Guangdong Provincial Key Laboratory of Quality & Safety Risk Assessment for Agro-Products, Guangzhou 510640, China
| | - Wenli Lian
- Institute of Quality Standard and Monitoring Technology for Agro-Products of Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China
- Key Laboratory of Testing and Evaluation for Agro-Product Safety and Quality, Ministry of Agriculture and Rural Affairs, Guangzhou 510640, China
- Guangdong Provincial Key Laboratory of Quality & Safety Risk Assessment for Agro-Products, Guangzhou 510640, China
| | - Xu Wang
- Institute of Quality Standard and Monitoring Technology for Agro-Products of Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China
- Key Laboratory of Testing and Evaluation for Agro-Product Safety and Quality, Ministry of Agriculture and Rural Affairs, Guangzhou 510640, China
- Guangdong Provincial Key Laboratory of Quality & Safety Risk Assessment for Agro-Products, Guangzhou 510640, China
| | - Guang Chen
- Institute of Quality Standard and Monitoring Technology for Agro-Products of Guangdong Academy of Agricultural Sciences, Guangzhou 510640, China
- Key Laboratory of Testing and Evaluation for Agro-Product Safety and Quality, Ministry of Agriculture and Rural Affairs, Guangzhou 510640, China
- Guangdong Provincial Key Laboratory of Quality & Safety Risk Assessment for Agro-Products, Guangzhou 510640, China
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Gautam N, Tiwari M, Kidwai M, Dutta P, Chakrabarty D. Functional characterization of rice metallothionein OsMT-I-Id: Insights into metal binding and heavy metal tolerance mechanisms. JOURNAL OF HAZARDOUS MATERIALS 2023; 458:131815. [PMID: 37336105 DOI: 10.1016/j.jhazmat.2023.131815] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Revised: 06/07/2023] [Accepted: 06/07/2023] [Indexed: 06/21/2023]
Abstract
Metallothioneins (MTs) are cysteine-rich proteins known for their strong metal-binding capabilities, making them effective in detoxifying heavy metals (HMs). This study focuses on characterizing the functional properties of OsMT-I-Id, a type-I Metallothionein found in rice. Using a HM-responsive yeast cup1Δ (DTY4), ycf1∆ (for cadmium), and acr3∆ mutants (for trivalent arsenic), we assessed the impact of OsMT-I-Id on metal accumulation and cellular resilience. Our results demonstrated that yeast cells expressing OsMT-I-Id showed increased tolerance and accumulated higher levels of copper (Cu), arsenic (As), and cadmium (Cd), compared to control cells. This can be attributed to the protein's ability to chelate and bind HMs. Site-directed mutagenesis was employed to investigate the specific contributions of cysteine residues. The study revealed that yeast cells with a mutated C-domain displayed heightened HM sensitivity, while cells with a mutated N-domain exhibited reduced sensitivity. This underscores the critical role of C-cysteine-rich domains in metal binding and tolerance of type-I rice MTs. Furthermore, the study identified the significance of the 12th cysteine position at the N-domain and the 68th and 72nd cysteine positions at the C-domain in influencing OsMT-I-Id metal-binding capacity. This research provides novel insights into the structure-function relationship and metal binding properties of type-I plant MTs.
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Affiliation(s)
- Neelam Gautam
- Biotechnology and Molecular Biology Division, CSIR-National Botanical Research Institute, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Madhu Tiwari
- Biotechnology and Molecular Biology Division, CSIR-National Botanical Research Institute, Lucknow 226001, India
| | - Maria Kidwai
- Biotechnology and Molecular Biology Division, CSIR-National Botanical Research Institute, Lucknow 226001, India
| | - Prasanna Dutta
- Biotechnology and Molecular Biology Division, CSIR-National Botanical Research Institute, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Debasis Chakrabarty
- Biotechnology and Molecular Biology Division, CSIR-National Botanical Research Institute, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.
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Sun SK, Chen J, Zhao FJ. Regulatory mechanisms of sulfur metabolism affecting tolerance and accumulation of toxic trace metals and metalloids in plants. JOURNAL OF EXPERIMENTAL BOTANY 2023; 74:3286-3299. [PMID: 36861339 DOI: 10.1093/jxb/erad074] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Accepted: 02/23/2023] [Indexed: 06/08/2023]
Abstract
Soil contamination with trace metals and metalloids can cause toxicity to plants and threaten food safety and human health. Plants have evolved sophisticated mechanisms to cope with excess trace metals and metalloids in soils, including chelation and vacuolar sequestration. Sulfur-containing compounds, such as glutathione and phytochelatins, play a crucial role in their detoxification, and sulfur uptake and assimilation are regulated in response to the stress of toxic trace metals and metalloids. This review focuses on the multi-level connections between sulfur homeostasis in plants and responses to such stresses, especially those imposed by arsenic and cadmium. We consider recent progress in understanding the regulation of biosynthesis of glutathione and phytochelatins and of the sensing mechanism of sulfur homeostasis for tolerance of trace metals and metalloids in plants. We also discuss the roles of glutathione and phytochelatins in controlling the accumulation and distribution of arsenic and cadmium in plants, and possible strategies for manipulating sulfur metabolism to limit their accumulation in food crops.
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Affiliation(s)
- Sheng-Kai Sun
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
- Centre for Organismal Studies (COS), Heidelberg University, 69120 Heidelberg, Germany
| | - Jie Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Fang-Jie Zhao
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
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Jung H, Park HJ, Jo SH, Lee A, Lee HJ, Kim HS, Jung C, Cho HS. Nuclear OsFKBP20-1b maintains SR34 stability and promotes the splicing of retained introns upon ABA exposure in rice. THE NEW PHYTOLOGIST 2023; 238:2476-2494. [PMID: 36942934 DOI: 10.1111/nph.18892] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 03/16/2023] [Indexed: 05/19/2023]
Abstract
Alternative splicing (AS) is a critical means by which plants respond to changes in the environment, but few splicing factors contributing to AS have been reported and functionally characterized in rice (Oryza sativa L.). Here, we explored the function and molecular mechanism of the spliceosome-associated protein OsFKBP20-1b during AS. We determined the AS landscape of wild-type and osfkbp20-1b knockout plants upon abscisic acid (ABA) treatment by transcriptome deep sequencing. To capture the dynamics of translating intron-containing mRNAs, we blocked transcription with cordycepin and performed polysome profiling. We also analyzed whether OsFKBP20-1b and the splicing factors OsSR34 and OsSR45 function together in AS using protoplast transfection assays. We show that OsFKBP20-1b interacts with OsSR34 and regulates its stability, suggesting a role as a chaperone-like protein in the spliceosome. OsFKBP20-1b facilitates the splicing of mRNAs with retained introns after ABA treatment; some of these mRNAs are translatable and encode functional transcriptional regulators of stress-responsive genes. In addition, interacting proteins, OsSR34 and OsSR45, regulate the splicing of the same retained introns as OsFKBP20-1b after ABA treatment. Our findings reveal that spliceosome-associated immunophilin functions in alternative RNA splicing in rice by positively regulating the splicing of retained introns to limit ABA response.
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Affiliation(s)
- Haemyeong Jung
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, South Korea
- Department of Biosystems and Bioengineering, KRIBB School of Biotechnology, University of Science and Technology (UST), Daejeon, 34113, South Korea
| | - Hyun Ji Park
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, South Korea
| | - Seung Hee Jo
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, South Korea
- Department of Biosystems and Bioengineering, KRIBB School of Biotechnology, University of Science and Technology (UST), Daejeon, 34113, South Korea
| | - Areum Lee
- Department of Biosystems and Bioengineering, KRIBB School of Biotechnology, University of Science and Technology (UST), Daejeon, 34113, South Korea
| | - Hyo-Jun Lee
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, South Korea
- Department of Functional Genomics, KRIBB School of Bioscience, UST, Daejeon, 34113, South Korea
| | - Hyun-Soon Kim
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, South Korea
- Department of Biosystems and Bioengineering, KRIBB School of Biotechnology, University of Science and Technology (UST), Daejeon, 34113, South Korea
| | - Choonkyun Jung
- Department of International Agricultural Technology and Crop Biotechnology Institute/Green Bio Science and Technology, Seoul National University, Pyeongchang, 25354, South Korea
- Department of Agriculture, Forestry, and Bioresources and Integrated Major in Global Smart Farm, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, South Korea
| | - Hye Sun Cho
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, South Korea
- Department of Biosystems and Bioengineering, KRIBB School of Biotechnology, University of Science and Technology (UST), Daejeon, 34113, South Korea
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16
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Lee A, Park HJ, Jo SH, Jung H, Kim HS, Lee HJ, Kim YS, Jung C, Cho HS. The spliceophilin CYP18-2 is mainly involved in the splicing of retained introns under heat stress in Arabidopsis. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2023; 65:1113-1133. [PMID: 36636802 DOI: 10.1111/jipb.13450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2022] [Accepted: 01/12/2023] [Indexed: 05/13/2023]
Abstract
Peptidyl-prolyl isomerase-like 1 (PPIL1) is associated with the human spliceosome complex. However, its function in pre-mRNA splicing remains unclear. In this study, we show that Arabidopsis thaliana CYCLOPHILIN 18-2 (AtCYP18-2), a PPIL1 homolog, plays an essential role in heat tolerance by regulating pre-mRNA splicing. Under heat stress conditions, AtCYP18-2 expression was upregulated in mature plants and GFP-tagged AtCYP18-2 redistributed to nuclear and cytoplasmic puncta. We determined that AtCYP18-2 interacts with several spliceosome complex BACT components in nuclear puncta and is primarily associated with the small nuclear RNAs U5 and U6 in response to heat stress. The AtCYP18-2 loss-of-function allele cyp18-2 engineered by CRISPR/Cas9-mediated gene editing exhibited a hypersensitive phenotype to heat stress relative to the wild type. Moreover, global transcriptome profiling showed that the cyp18-2 mutation affects alternative splicing of heat stress-responsive genes under heat stress conditions, particularly intron retention (IR). The abundance of most intron-containing transcripts of a subset of genes essential for thermotolerance decreased in cyp18-2 compared to the wild type. Furthermore, the intron-containing transcripts of two heat stress-related genes, HEAT SHOCK PROTEIN 101 (HSP101) and HEAT SHOCK FACTOR A2 (HSFA2), produced functional proteins. HSP101-IR-GFP localization was responsive to heat stress, and HSFA2-III-IR interacted with HSF1 and HSP90.1 in plant cells. Our findings reveal that CYP18-2 functions as a splicing factor within the BACT spliceosome complex and is crucial for ensuring the production of adequate levels of alternatively spliced transcripts to enhance thermotolerance.
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Affiliation(s)
- Areum Lee
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Korea
| | - Hyun Ji Park
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Korea
| | - Seung Hee Jo
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Korea
- Department of Biosystems and Bioengineering, KRIBB School of Biotechnology, University of Science and Technology (UST), Daejeon, 34141, Korea
| | - Haemyeong Jung
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Korea
- Department of Biosystems and Bioengineering, KRIBB School of Biotechnology, University of Science and Technology (UST), Daejeon, 34141, Korea
| | - Hyun-Soon Kim
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Korea
| | - Hyo-Jun Lee
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Korea
- Department of Functional Genomics, KRIBB School of Bioscience, UST, Daejeon, 34113, Korea
| | - Youn-Sung Kim
- Department of Biotechnology, NongWoo Bio, Anseong, 17558, Korea
| | - Choonkyun Jung
- Department of International Agricultural Technology and Crop Biotechnology Institute/Green Bio Science and Technology, Seoul National University, Pyeongchang, 25354, Korea
- Department of Agriculture, Forestry, and Bioresources and Integrated Major in Global Smart Farm, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Korea
| | - Hye Sun Cho
- Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Korea
- Department of Biosystems and Bioengineering, KRIBB School of Biotechnology, University of Science and Technology (UST), Daejeon, 34141, Korea
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Sinha D, Datta S, Mishra R, Agarwal P, Kumari T, Adeyemi SB, Kumar Maurya A, Ganguly S, Atique U, Seal S, Kumari Gupta L, Chowdhury S, Chen JT. Negative Impacts of Arsenic on Plants and Mitigation Strategies. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12091815. [PMID: 37176873 PMCID: PMC10181087 DOI: 10.3390/plants12091815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Revised: 04/21/2023] [Accepted: 04/24/2023] [Indexed: 05/15/2023]
Abstract
Arsenic (As) is a metalloid prevalent mainly in soil and water. The presence of As above permissible levels becomes toxic and detrimental to living organisms, therefore, making it a significant global concern. Humans can absorb As through drinking polluted water and consuming As-contaminated food material grown in soil having As problems. Since human beings are mobile organisms, they can use clean uncontaminated water and food found through various channels or switch from an As-contaminated area to a clean area; but plants are sessile and obtain As along with essential minerals and water through roots that make them more susceptible to arsenic poisoning and consequent stress. Arsenic and phosphorus have many similarities in terms of their physical and chemical characteristics, and they commonly compete to cause physiological anomalies in biological systems that contribute to further stress. Initial indicators of arsenic's propensity to induce toxicity in plants are a decrease in yield and a loss in plant biomass. This is accompanied by considerable physiological alterations; including instant oxidative surge; followed by essential biomolecule oxidation. These variables ultimately result in cell permeability and an electrolyte imbalance. In addition, arsenic disturbs the nucleic acids, the transcription process, and the essential enzymes engaged with the plant system's primary metabolic pathways. To lessen As absorption by plants, a variety of mitigation strategies have been proposed which include agronomic practices, plant breeding, genetic manipulation, computer-aided modeling, biochemical techniques, and the altering of human approaches regarding consumption and pollution, and in these ways, increased awareness may be generated. These mitigation strategies will further help in ensuring good health, food security, and environmental sustainability. This article summarises the nature of the impact of arsenic on plants, the physio-biochemical mechanisms evolved to cope with As stress, and the mitigation measures that can be employed to eliminate the negative effects of As.
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Affiliation(s)
- Dwaipayan Sinha
- Department of Botany, Government General Degree College, Mohanpur 721436, Paschim Medinipur, West Bengal, India
| | - Soumi Datta
- Bioactive Natural Product Laboratory, School of Interdisciplinary Sciences and Technology, Jamia Hamdard, Hamdard Nagar, New Delhi 110062, India
| | - Reema Mishra
- Department of Botany, Gargi College, University of Delhi, New Delhi 110049, India
| | - Preeti Agarwal
- Department of Botany, Gargi College, University of Delhi, New Delhi 110049, India
| | - Tripti Kumari
- Department of Chemistry, Gargi College, University of Delhi, New Delhi 110049, India
| | - Sherif Babatunde Adeyemi
- Ethnobotany/Phytomedicine Laboratory, Department of Plant Biology, Faculty of Life Sciences, University of Ilorin, Ilorin PMB 1515, Kwara State, Nigeria
| | - Arun Kumar Maurya
- Department of Botany, Multanimal Modi College, Modinagar, Ghaziabad 201204, Uttar Pradesh, India
| | - Sharmistha Ganguly
- University Department of Botany, Ranchi University, Ranchi 834008, Jharkhand, India
| | - Usman Atique
- Department of Bioscience and Biotechnology, College of Biological Systems, Chungnam National University, Daejeon 34134, Republic of Korea
| | - Sanchita Seal
- Department of Botany, Polba Mahavidyalaya, Polba 712148, West Bengal, India
| | - Laxmi Kumari Gupta
- Bioprocess Development Laboratory, Department of Biotechnology, National Institute of Technology Warangal, Warangal 506004, Telangana, India
| | - Shahana Chowdhury
- Department of Biotechnology, Faculty of Engineering Sciences, German University Bangladesh, TNT Road, Telipara, Chandona Chowrasta, Gazipur 1702, Bangladesh
| | - Jen-Tsung Chen
- Department of Life Sciences, National University of Kaohsiung, Kaohsiung 811, Taiwan
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Seregin IV, Kozhevnikova AD. Phytochelatins: Sulfur-Containing Metal(loid)-Chelating Ligands in Plants. Int J Mol Sci 2023; 24:2430. [PMID: 36768751 PMCID: PMC9917255 DOI: 10.3390/ijms24032430] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 01/20/2023] [Accepted: 01/23/2023] [Indexed: 01/28/2023] Open
Abstract
Phytochelatins (PCs) are small cysteine-rich peptides capable of binding metal(loid)s via SH-groups. Although the biosynthesis of PCs can be induced in vivo by various metal(loid)s, PCs are mainly involved in the detoxification of cadmium and arsenic (III), as well as mercury, zinc, lead, and copper ions, which have high affinities for S-containing ligands. The present review provides a comprehensive account of the recent data on PC biosynthesis, structure, and role in metal(loid) transport and sequestration in the vacuoles of plant cells. A comparative analysis of PC accumulation in hyperaccumulator plants, which accumulate metal(loid)s in their shoots, and in the excluders, which accumulate metal(loid)s in their roots, investigates the question of whether the endogenous PC concentration determines a plant's tolerance to metal(loid)s. Summarizing the available data, it can be concluded that PCs are not involved in metal(loid) hyperaccumulation machinery, though they play a key role in metal(loid) homeostasis. Unraveling the physiological role of metal(loid)-binding ligands is a fundamental problem of modern molecular biology, plant physiology, ionomics, and toxicology, and is important for the development of technologies used in phytoremediation, biofortification, and phytomining.
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Affiliation(s)
- Ilya V. Seregin
- K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, Botanicheskaya St., 35, 127276 Moscow, Russia
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Chen H, Zhai L, Chen K, Shen C, Zhu S, Qu P, Tang J, Liu J, He H, Xu J. Genetic background- and environment-independent QTL and candidate gene identification of appearance quality in three MAGIC populations of rice. FRONTIERS IN PLANT SCIENCE 2022; 13:1074106. [PMID: 36438096 PMCID: PMC9697191 DOI: 10.3389/fpls.2022.1074106] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Accepted: 10/28/2022] [Indexed: 06/01/2023]
Abstract
Many QTL have been identified for grain appearance quality by linkage analysis (LA) in bi-parental mapping populations and by genome-wide association study (GWAS) in natural populations in rice. However, few of the well characterized genes/QTL have been successfully applied in molecular rice breeding due to genetic background (GB) and environment effects on QTL expression and deficiency of favorable alleles. In this study, GWAS and LA were performed to identify QTL for five grain appearance quality-related traits using three multi-parent advanced generation inter-cross (MAGIC) populations. A total of 22 QTL on chromosomes 1-3, 5-8 were identified by GWAS for five traits in DC1, DC2 and 8way, and four combined populations DC12 (DC1+DC2), DC18 (DC1+8way), DC28 (DC2+8way) and DC128 (DC1+DC2+8way). And a total of 42 QTL were identified on all 12 chromosomes except 10 by LA in the three single populations. Among 20 QTL identified by GWAS in DC1, DC2 and 8way, 10, four and three QTL were commonly detected in DC18, DC28, and DC128, respectively. Similarly, among 42 QTL detected by LA in the three populations, four, one and two QTL were commonly detected in DC18, DC28, and DC128, respectively. There was no QTL mapped together in DC12 by both two mapping methods, indicating that GB could greatly affect the mapping results, and it was easier to map the common QTL among populations with similar GB. The 8way population was more powerful for QTL mapping than the DC1, DC2 and various combined populations. Compared with GWAS, LA can not only identify large-effect QTL, but also identify minor-effect ones. Among 11 QTL simultaneously detected by the two methods in different GBs and environments, eight QTL corresponded to known genes, including AqGL3b and AqGLWR3a for GL and GLWR, AqGW5a, AqGLWR5, AqDEC5 and AqPGWC5 for GW, GLWR, DEC and PGWC, and AqDEC6b and AqPGWC6b for DEC and PGWC, respectively. AqGL7, AqGL3c/AqGLWR3b, AqDEC6a/AqPGWC6a, and AqPGWC7 were newly identified and their candidate genes were analyzed and inferred. It was discussed to further improve grain appearance quality through designed QTL pyramiding strategy based on the stable QTL identified in the MAGIC populations.
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Affiliation(s)
- Huizhen Chen
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education/College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi, China
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- Pingxiang Center for Agricultural Sciences and Technology Research, Pingxiang, Jiangxi, China
| | - Laiyuan Zhai
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Kai Chen
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Congcong Shen
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Shuangbing Zhu
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Pingping Qu
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jie Tang
- Pingxiang Center for Agricultural Sciences and Technology Research, Pingxiang, Jiangxi, China
| | - Jianping Liu
- Pingxiang Center for Agricultural Sciences and Technology Research, Pingxiang, Jiangxi, China
| | - Haohua He
- Key Laboratory of Crop Physiology, Ecology and Genetic Breeding, Ministry of Education/College of Agronomy, Jiangxi Agricultural University, Nanchang, Jiangxi, China
| | - Jianlong Xu
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- The National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China
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20
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Ai H, Wu D, Li C, Hou M. Advances in molecular mechanisms underlying cadmium uptake and translocation in rice. FRONTIERS IN PLANT SCIENCE 2022; 13:1003953. [PMID: 36204081 PMCID: PMC9530829 DOI: 10.3389/fpls.2022.1003953] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Accepted: 08/29/2022] [Indexed: 06/16/2023]
Abstract
The increasing cadmium (Cd) pollution in paddy fields has severely threatened China's ecological and food safety. Cultivation of low Cd accumulation varieties to reduce Cd content in rice or cultivation of Cd-tolerant varieties for phytoremediation are considered effective methods to control Cd pollution in paddy fields. However, the underlying molecular mechanism of Cd absorption and transport by rice plants needs to be deciphered to cultivate these varieties. Here, we summarized the molecular mechanisms underlying Cd absorption and transport in rice, as well as the variation of Cd accumulation among rice varieties, the QTLs related to Cd accumulation in rice, and discusses the direction of future research.
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Affiliation(s)
- Hao Ai
- Center for Crop Biotechnology, College of Agriculture, Anhui Science and Technology University, Fengyang, China
| | - Daxia Wu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Plant Nutrition and Fertilization in Low-Middle Reaches of the Yangtze River, Ministry of Agriculture and Rural Affairs, Nanjing Agricultural University, Nanjing, China
| | - Chunli Li
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, China
| | - Mengmeng Hou
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
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21
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Khanna K, Kohli SK, Kumar P, Ohri P, Bhardwaj R, Alam P, Ahmad P. Arsenic as hazardous pollutant: Perspectives on engineering remediation tools. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:155870. [PMID: 35568183 DOI: 10.1016/j.scitotenv.2022.155870] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Revised: 05/07/2022] [Accepted: 05/08/2022] [Indexed: 06/15/2023]
Abstract
Arsenic (As) is highly toxic metal (loid) that impairs plant growth and proves fatal towards human population. It disrupts physiological, biochemical and molecular attributes of plants associated with water/nutrient uptake, redox homeostasis, photosynthetic machineries, cell/membrane damage, and ATP synthesis. Numerous transcription factors are responsive towards As through regulating stress signaling, toxicity and resistance. Additionally, characterization of specific genes encoding uptake, translocation, detoxification and sequestration has also explained their underlying mechanisms. Arsenic within soil enters the food chain and cause As-poisoning. Plethora of conventional methods has been used since decades to plummet As-toxicity, but the success rate is quite low due to environmental hazards. Henceforth, exploration of effective and eco-friendly methods is aimed for As-remediation. With the technological advancements, we have enumerated novel strategies to address this concern for practicing such techniques on global scale. Novel strategies such as bioremediation, phytoremediation, mycorrhizae-mediated remediation, biochar, algal-remediation etc. possess extraordinary results. Moreover, nitric oxide (NO), a signaling molecule has also been explored in relieving As-stress through reducing oxidative damages and triggering antioxidative responses. Other strategies such as role of plant hormones (salicylic acid, indole-3-acetic acid, jasmonic acid) and micro-nutrients such as selenium have also been elucidated in As-remediation from soil. This has been observed through stimulated antioxidant activities, gene expression of transporters, defense genes, cell-wall modifications along with the synthesis of chelating agents such as phytochelatins and metallothioneins. This review encompasses the updated information about As toxicity and its remediation through novel techniques that serve to be the hallmarks for stress revival. We have summarised the genetic engineering protocols, biotechnological as well as nanotechnological applications in plants to combat As-toxicity.
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Affiliation(s)
- Kanika Khanna
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar 143005, Punjab, India; Department of Microbiology, D.A.V University, Sarmastpur, Jalandhar 144001, Punjab, India.
| | - Sukhmeen Kaur Kohli
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar 143005, Punjab, India
| | - Pankaj Kumar
- Department of Chemical Engineering, D.A.V University, Sarmastpur, Jalandhar 144001, Punjab, India
| | - Puja Ohri
- Department of Zoology, Guru Nanak Dev University, Amritsar 143005, Punjab, India
| | - Renu Bhardwaj
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar 143005, Punjab, India
| | - Pravej Alam
- Biology Department, College of Science and Humanities, Prince Sattam bin Abdulaziz University (PSAU), Alkharj, Saudi Arabia
| | - Parvaiz Ahmad
- Department of Botany, GDC Pulwama, 192301, Jammu and Kashmir, India.
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22
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Lee SB, Kim GJ, Shin JD, Chung W, Park SK, Choi GH, Park SW, Park YJ. Genome-Scale Profiling and High-Throughput Analyses Unravel the Genetic Basis of Arsenic Content Variation in Rice. FRONTIERS IN PLANT SCIENCE 2022; 13:905842. [PMID: 35958208 PMCID: PMC9361212 DOI: 10.3389/fpls.2022.905842] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 06/15/2022] [Indexed: 06/15/2023]
Abstract
Ionomics, the study of the composition of mineral nutrients and trace elements in organisms that represent the inorganic component of cells and tissues, has been widely studied to explore to unravel the molecular mechanism regulating the elemental composition of plants. However, the genetic factors of rice subspecies in the interaction between arsenic and functional ions have not yet been explained. Here, the correlation between As and eight essential ions in a rice core collection was analyzed, taking into account growing condition and genetic factors. The results demonstrated that the correlation between As and essential ions was affected by genetic factors and growing condition, but it was confirmed that the genetic factor was slightly larger with the heritability for arsenic content at 53%. In particular, the cluster coefficient of japonica (0.428) was larger than that of indica (0.414) in the co-expression network analysis for 23 arsenic genes, and it was confirmed that the distance between genes involved in As induction and detoxification of japonica was far than that of indica. These findings provide evidence that japonica populations could accumulate more As than indica populations. In addition, the cis-eQTLs of AIR2 (arsenic-induced RING finger protein) were isolated through transcriptome-wide association studies, and it was confirmed that AIR2 expression levels of indica were lower than those of japonica. This was consistent with the functional haplotype results for the genome sequence of AIR2, and finally, eight rice varieties with low AIR2 expression and arsenic content were selected. In addition, As-related QTLs were identified on chromosomes 5 and 6 under flooded and intermittently flooded conditions through genome-scale profiling. Taken together, these results might assist in developing markers and breeding plans to reduce toxic element content and breeding high-quality rice varieties in future.
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Affiliation(s)
- Sang-Beom Lee
- Crop Foundation Research Division, National Institute of Crop Science, Wanju, South Korea
| | - Gyeong-Jin Kim
- Residual Agrochemical Assessment Division, National Institute of Agriculture Science, Wanju, South Korea
| | - Jung-Du Shin
- Bio-Technology of Multidisciplinary Sciences Co., Wanju, South Korea
| | - Woojin Chung
- Department of Environmental Energy Engineering, Kyonggi University, Suwon, South Korea
| | - Soo-Kwon Park
- Crop Foundation Research Division, National Institute of Crop Science, Wanju, South Korea
| | - Geun-Hyoung Choi
- Residual Agrochemical Assessment Division, National Institute of Agriculture Science, Wanju, South Korea
| | - Sang-Won Park
- Reserch Policy Bureau, Rural Development Administration, Wanju, South Korea
| | - Yong-Jin Park
- Department of Plant Resources, College of Industrial Sciences, Kongju National University, Yesan, South Korea
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23
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Singh S, Srivastava S. Recent advances in arsenic mitigation in rice through biotechnological approaches. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2022; 25:305-313. [PMID: 35654740 DOI: 10.1080/15226514.2022.2080803] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Arsenic (As) is a major threat to the environment and human health due to its toxicity and carcinogenicity. Occurrence of alarming concentrations of As in water and soil leads to its bioaccumulation in crops which is a major health concern globally. Rice (Oryza sativa) is a staple food for a large population staying in As contaminated areas so, it is of utmost importance to reduce As levels in rice, especially grains. Amongst several strategies in practice, biotechnology may provide an effective option to reduce As accumulation in rice grains. Genetic engineering can be a viable approach to exploit potential genes playing roles in As metabolism pathway in plants. Besides, developing low As accumulating rice varieties through breeding is also an important area. Identifying genotypic variation in rice is a crucial step toward the development of a safe rice cultivar for growing in As-affected areas. Significant genotypic variation has been found in rice varieties for As accumulation in grains and that is attributable to differential expression of transporters, radial oxygen loss, and other regulators of As stress. This review provides recent updates on the research advances leading to transgenic and breeding approaches adopted to reduce As levels in rice, especially grains.
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Affiliation(s)
- Shraddha Singh
- Nuclear Agriculture & Biotechnology Division, Bhabha Atomic Research Centre, Mumbai, Maharashtra, India
- Homi Bhabha National Institute, Mumbai, Maharashtra, India
| | - Sudhakar Srivastava
- Plant Stress Biology Laboratory, Institute of Environment and Sustainable Development, Banaras Hindu University, Varanasi, Uttar Pradesh, India
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24
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Zhang Q, Gong M, Xu S, Wei Y, Yuan J, Chang Q. Rhizophagus intraradices improves arsenic tolerance in Sophora viciifolia Hance. ANN MICROBIOL 2022. [DOI: 10.1186/s13213-022-01668-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Abstract
Purpose
Arbuscular mycorrhizal fungi (AMF) are capable of protecting host plants against heavy metal toxicity, whereas rare knowledge has been acquired on the underlying effects of AMF on woody leguminous species under arsenic (As) stress. This study was aimed that whether AMF inoculation improves the As tolerance in Sophora viciifolia (a king of leguminous shrub).
Methods
S. viciifolia seedlings were inoculated with AMF Rhizophagus intraradices, and then the seedlings were grown at three levels (0, 50, and 100 mg As kg−1 soil) of As-polluted soil by performing the potted experiments. The plant growth, photosynthetic parameter, oxidative damage, antioxidant enzyme activities and gene expression of phytochelatin synthase in R. intraradices- and non-inoculated S. davidii seedlings under the different levels of As stress were analyzed.
Result
Compared with non-inoculated S. viciifolia at the identical As level, R. intraradices-inoculated S. viciifolia were higher in the shoot and root dry weight, plant height, root length, photosynthetic rate, stomatal conductance, transpiration rate, maximal photochemical efficiency of PSII photochemistry, actual quantum yield, and photochemical quenching values, while the intercellular CO2 concentration and non-photochemical quenching values were lower. As-induced oxidative stress generating malondialdehyde, hydrogen peroxide and superoxide in the S. viciifolia leaves and roots reduced significantly by R. intraradices inoculation, whereas the activities of antioxidative enzymes (e.g., superoxide dismutase, peroxidase, and catalase) in S. viciifolia leaves and roots were increased by R. intraradices inoculation. Notably, R. intraradices inoculation up-regulated the gene expression of S. viciifolia phytochelatins in the leaves and roots.
Conclusion
These results demonstrated that R. intraradices inoculation enhanced the As tolerance in S. viciifolia seedlings by improving the plant growth, gas exchange, chlorophyll fluorescence, reactive oxygen species, antioxidant enzymes and gene expression of S. viciifolia phytochelatins. The present study verified a multifarious positive role of AMF for woody leguminous species under As stress.
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25
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Genome-wide in silico analysis indicates the involvement of OsSWEET transporters in abiotic and heavy metal (loid) stress responses in rice. Biologia (Bratisl) 2022. [DOI: 10.1007/s11756-022-01022-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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26
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Singh R, Misra AN, Sharma P. Safe, efficient, and economically beneficial remediation of arsenic-contaminated soil: possible strategies for increasing arsenic tolerance and accumulation in non-edible economically important native plants. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:64113-64129. [PMID: 34036509 DOI: 10.1007/s11356-021-14507-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Accepted: 05/17/2021] [Indexed: 06/12/2023]
Abstract
Anthropogenic activities, geological processes, and biogenic sources have led to the enhanced concentration of arsenic (As), a toxic metalloid in water and soil. Non-edible, economically important plants can be employed for safe As phytoremediation in addition to generating extra income. However, these plants may get affected by stressful local environmental conditions. Native plant species are adapted to local environmental conditions and hence overcome this problem. Native non-edible economic plant species which show high As tolerance and accumulation are promising candidate for safe, efficient, and economically beneficial phytoremediation of As-contaminated sites. The current review discusses the potential of native economic plant species that can be used in As phytoremediation programme. However, since their phytoremediation potential is moderate, possible strategies for increasing As olerance and accumulation, especially genetic modification, have been discussed in detail. Knowledge gained from the review can be used for the development of As tolerance and accumulation in non-edible economic native plants.
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Affiliation(s)
- Rajani Singh
- Department of Life Sciences, Central University of Jharkhand, Brambe, Ranchi, Jharkhand, 835205, India
| | - Amarendra Narayan Misra
- Department of Life Sciences, Central University of Jharkhand, Brambe, Ranchi, Jharkhand, 835205, India
| | - Pallavi Sharma
- Department of Life Sciences, Central University of Jharkhand, Brambe, Ranchi, Jharkhand, 835205, India.
- School of Environment and Sustainable Development, Central University of Gujarat, Sector-30, Gandhinagar, Gujarat, 382030, India.
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27
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Saha I, Hasanuzzaman M, Adak MK. Abscisic acid priming regulates arsenite toxicity in two contrasting rice (Oryza sativa L.) genotypes through differential functioning of sub1A quantitative trait loci. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 287:117586. [PMID: 34426386 DOI: 10.1016/j.envpol.2021.117586] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Revised: 05/24/2021] [Accepted: 06/10/2021] [Indexed: 05/07/2023]
Abstract
Arsenite [As(III)] toxicity causes impeded growth, inadequate productivity of plants and toxicity through the food chain. Using various chemical residues for priming is one of the approaches in conferring arsenic tolerance in crops. We investigated the mechanism of abscisic acid (ABA)-induced As(III) tolerance in rice genotypes (cv. Swarna and Swarna Sub1) pretreated with 10 μM of ABA for 24 h and transferred into 0, 25 and 50 μM arsenic for 10 days. Plants showed a dose-dependent bioaccumulation of As(III), oxidative stress indicators like superoxide, hydrogen peroxide, thiobarbituric acid reactive substances and the activity of lipoxygenase. As(III) had disrupted cellular redox that reflecting growth indices like net assimilation rate, relative growth rate, specific leaf weight, leaf mass ratio, relative water content, proline, delta-1-pyrroline-5-carboxylate synthetase and electrolyte leakage. ABA priming was more protective in cv. Swarna Sub1 than Swarna for retrieval of total glutathione pool, non-protein thiols, cysteine, phytochelatin and glutathione reductase. Phosphate metabolisms were significantly curtailed irrespective of genotypes where ABA had moderated phosphate uptake and its metabolizing enzymes like acid phosphatase, alkaline phosphatase and H+/ATPase. Rice seedlings had regulated antioxidative potential with the varied polymorphic expression of those enzymes markedly with antioxidative enzymes. The results have given the possible cellular and physiological traits those may interact with ABA priming in the establishment of plant tolerance with As(III) over accumulation and, thereby, its amelioration for oxidative damages. Finally, cv. Swarna Sub1 was identified as a rice genotype as a candidate for breeding program for sustainability against As(III) stress with cellular and physiological traits serving better for selection pressure.
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Affiliation(s)
- Indraneel Saha
- Plant Physiology and Plant Molecular Biology Research Unit, Department of Botany, University of Kalyani, Kalyani, 74 1235, Nadia, W.B., India
| | - Mirza Hasanuzzaman
- Department of Agronomy, Faculty of Agriculture, Sher-e-Bangla Agricultural University, Sher-e-Bangla Nagar, Dhaka, 1207, Bangladesh.
| | - Malay Kumar Adak
- Plant Physiology and Plant Molecular Biology Research Unit, Department of Botany, University of Kalyani, Kalyani, 74 1235, Nadia, W.B., India
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28
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Kaur R, Das S, Bansal S, Singh G, Sardar S, Dhar H, Ram H. Heavy metal stress in rice: Uptake, transport, signaling, and tolerance mechanisms. PHYSIOLOGIA PLANTARUM 2021; 173:430-448. [PMID: 34227684 DOI: 10.1111/ppl.13491] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Revised: 05/06/2021] [Accepted: 06/30/2021] [Indexed: 06/13/2023]
Abstract
Heavy metal contamination of agricultural fields has become a global concern as it causes a direct impact on human health. Rice is the major food crop for almost half of the world population and is grown under diverse environmental conditions, including heavy metal-contaminated soil. In recent years, the impact of heavy metal contamination on rice yield and grain quality has been shown through multiple approaches. In this review article, different aspects of heavy metal stress, that is uptake, transport, signaling and tolerance mechanisms, are comprehensively discussed with special emphasis on rice. For uptake, some of the transporters have specificity to one or two metal ions, whereas many other transporters are able to transport many different ions. After uptake, the intercellular signaling is mediated through different signaling pathways involving the regulation of various hormones, alteration of calcium levels, and the activation of mitogen-activated protein kinases. Heavy metal stress signals from various intermediate molecules activate various transcription factors, which triggers the expression of various antioxidant enzymes. Activated antioxidant enzymes then scavenge various reactive oxygen species, which eventually leads to stress tolerance in plants. Non-enzymatic antioxidants, such as ascorbate, metalloids, and even metal-binding peptides (metallothionein and phytochelatin) can also help to reduce metal toxicity in plants. Genetic engineering has been successfully used in rice and many other crops to increase metal tolerance and reduce heavy metals accumulation. A comprehensive understanding of uptake, transport, signaling, and tolerance mechanisms will help to grow rice plants in agricultural fields with less heavy metal accumulation in grains.
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Affiliation(s)
- Ravneet Kaur
- Agricultural Biotechnology division, National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Susmita Das
- Plant Physiology and Biochemistry Laboratory, Department of Botany, University of Calcutta, Kolkata, India
| | - Sakshi Bansal
- Agricultural Biotechnology division, National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Gurbir Singh
- Agricultural Biotechnology division, National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Shaswati Sardar
- Lab 202, National Institute of Plant Genome Research (NIPGR), New Delhi, India
| | - Hena Dhar
- Agricultural Biotechnology division, National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Hasthi Ram
- Lab 202, National Institute of Plant Genome Research (NIPGR), New Delhi, India
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29
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Yu J, Liu C, Lin H, Zhang B, Li X, Yuan Q, Liu T, He H, Wei Z, Ding S, Zhang C, Gao H, Guo L, Wang Q, Qian Q, Shang L. Loci and natural alleles for cadmium-mediated growth responses revealed by a genome wide association study and transcriptome analysis in rice. BMC PLANT BIOLOGY 2021; 21:374. [PMID: 34388987 DOI: 10.1186/s12870-021-03145-3149] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Accepted: 07/19/2021] [Indexed: 05/26/2023]
Abstract
BACKGROUND Cadmium (Cd) is a toxic heavy metal that is harmful to the environment and human health. Cd pollution threatens the cultivation of rice (Oryza sativa L.) in many countries. Improving rice performance under Cd stress could potentially improve rice productivity. RESULTS In this study, 9 growth traits of 188 different cultivated rice accessions under normal and Cd stress conditions were found to be highly variable during the seedling stage. Based on ~3.3 million single nucleotide polymorphisms (SNPs), 119 Cd-mediated growth response (CGR) quantitative trait loci (QTL) were identified by a genome-wide association study (GWAS), 55 of which have been validated by previously reported QTL and 64 were new CGR loci. Combined with the data from the GWAS, transcriptome analysis, gene annotations from the gene ontology (GO) Slim database, and annotations and functions of homologous genes, 148 CGR candidate genes were obtained. Additionally, several reported genes have been found to play certain roles in CGRs. Seven Cd-related cloned genes were found among the CGR genes. Natural elite haplotypes/alleles in these genes that increased Cd tolerance were identified by a haplotype analysis of a diverse mini core collection. More importantly, this study was the first to uncover the natural variations of 5 GST genes that play important roles in CGRs. CONCLUSION The exploration of Cd-resistant rice germplasm resources and the identification of elite natural variations related to Cd-resistance will help improve the tolerance of current major rice varieties to Cd, as well as provide raw materials and new genes for breeding Cd-resistant varieties.
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Affiliation(s)
- Jianping Yu
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- Key Laboratory of Crop Heterosis and Utilization, Ministry of Education/ Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, 100193, China
| | - Chaolei Liu
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China
| | - Hai Lin
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Bin Zhang
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Xiaoxia Li
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Qiaoling Yuan
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Tianjiao Liu
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Huiying He
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Zhaoran Wei
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Shilin Ding
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China
| | - Chao Zhang
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Hongsheng Gao
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Longbiao Guo
- Key Laboratory of Crop Heterosis and Utilization, Ministry of Education/ Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, 100193, China
| | - Quan Wang
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Qian Qian
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
| | - Lianguang Shang
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
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30
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Yu J, Liu C, Lin H, Zhang B, Li X, Yuan Q, Liu T, He H, Wei Z, Ding S, Zhang C, Gao H, Guo L, Wang Q, Qian Q, Shang L. Loci and natural alleles for cadmium-mediated growth responses revealed by a genome wide association study and transcriptome analysis in rice. BMC PLANT BIOLOGY 2021; 21:374. [PMID: 34388987 PMCID: PMC8362254 DOI: 10.1186/s12870-021-03145-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Accepted: 07/19/2021] [Indexed: 06/13/2023]
Abstract
BACKGROUND Cadmium (Cd) is a toxic heavy metal that is harmful to the environment and human health. Cd pollution threatens the cultivation of rice (Oryza sativa L.) in many countries. Improving rice performance under Cd stress could potentially improve rice productivity. RESULTS In this study, 9 growth traits of 188 different cultivated rice accessions under normal and Cd stress conditions were found to be highly variable during the seedling stage. Based on ~3.3 million single nucleotide polymorphisms (SNPs), 119 Cd-mediated growth response (CGR) quantitative trait loci (QTL) were identified by a genome-wide association study (GWAS), 55 of which have been validated by previously reported QTL and 64 were new CGR loci. Combined with the data from the GWAS, transcriptome analysis, gene annotations from the gene ontology (GO) Slim database, and annotations and functions of homologous genes, 148 CGR candidate genes were obtained. Additionally, several reported genes have been found to play certain roles in CGRs. Seven Cd-related cloned genes were found among the CGR genes. Natural elite haplotypes/alleles in these genes that increased Cd tolerance were identified by a haplotype analysis of a diverse mini core collection. More importantly, this study was the first to uncover the natural variations of 5 GST genes that play important roles in CGRs. CONCLUSION The exploration of Cd-resistant rice germplasm resources and the identification of elite natural variations related to Cd-resistance will help improve the tolerance of current major rice varieties to Cd, as well as provide raw materials and new genes for breeding Cd-resistant varieties.
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Affiliation(s)
- Jianping Yu
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- Key Laboratory of Crop Heterosis and Utilization, Ministry of Education/ Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, 100193, China
| | - Chaolei Liu
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China
| | - Hai Lin
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Bin Zhang
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Xiaoxia Li
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Qiaoling Yuan
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Tianjiao Liu
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Huiying He
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Zhaoran Wei
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Shilin Ding
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China
| | - Chao Zhang
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Hongsheng Gao
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Longbiao Guo
- Key Laboratory of Crop Heterosis and Utilization, Ministry of Education/ Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, 100193, China
| | - Quan Wang
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
| | - Qian Qian
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310006, China.
| | - Lianguang Shang
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
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Riaz M, Kamran M, Rizwan M, Ali S, Parveen A, Malik Z, Wang X. Cadmium uptake and translocation: selenium and silicon roles in Cd detoxification for the production of low Cd crops: a critical review. CHEMOSPHERE 2021; 273:129690. [PMID: 33524757 DOI: 10.1016/j.chemosphere.2021.129690] [Citation(s) in RCA: 85] [Impact Index Per Article: 28.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 01/17/2021] [Accepted: 01/20/2021] [Indexed: 05/10/2023]
Abstract
Cadmium (Cd) is a primary contaminant in agricultural soils of the world. The ability of Cd uptake, transport, detoxification, and accumulation varies among different plant species and genotypes. Cd is translocated from soil to root by different transporters which are used for essential plant nutrient uptake. A number of strategies have been suggested for decreasing Cd toxicity in Cd contaminated soils. Recently, a lot of research have been carried out on minimizing Cd uptake through selenium (Se) and silicon (Si) applications. Both Se and Si have been reported to mitigate Cd toxicity in different crops. Vacuolar sequestration, formation of phytochelatins, and cell wall adsorption have been reported as effective mechanisms for Cd detoxification. The present review discussed past and current knowledge of literature to better understand Cd toxicity and its mitigation by adopting different feasible and practical approaches.
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Affiliation(s)
- Muhammad Riaz
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China
| | - Muhammad Kamran
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Muhammad Rizwan
- Department of Environmental Sciences and Engineering, Government College University Allama Iqbal Road, 38000, Faisalabad, Pakistan
| | - Shafaqat Ali
- Department of Environmental Sciences and Engineering, Government College University Allama Iqbal Road, 38000, Faisalabad, Pakistan; Department of Biological Sciences and Technology, China Medical University, Taichung, 40402, Taiwan
| | - Aasma Parveen
- Department of Soil Science, Faculty of Agriculture and Environmental Sciences, The Islamia University of Bahawalpur, Bahawalpur, 63100, Punjab, Pakistan
| | - Zaffar Malik
- Department of Soil Science, Faculty of Agriculture and Environmental Sciences, The Islamia University of Bahawalpur, Bahawalpur, 63100, Punjab, Pakistan
| | - Xiurong Wang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, Root Biology Center, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, Guangdong, PR China.
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Luo JS, Zhang Z. Mechanisms of cadmium phytoremediation and detoxification in plants. ACTA ACUST UNITED AC 2021. [DOI: 10.1016/j.cj.2021.02.001] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Abstract
Cadmium (Cd) is an element that is nonessential and extremely toxic to both plants and human beings. Soil contaminated with Cd has adverse impacts on crop yields and threatens human health via the food chain. Cultivation of low-Cd cultivars has been of particular interest and is one of the most cost-effective and promising approaches to minimize human dietary intake of Cd. Low-Cd crop cultivars should meet particular criteria, including acceptable yield and quality, and their edible parts should have Cd concentrations below maximum permissible concentrations for safe consumption, even when grown in Cd-contaminated soil. Several low-Cd cereal cultivars and genotypes have been developed worldwide through cultivar screening and conventional breeding. Molecular markers are powerful in facilitating the selection of low-Cd cereal cultivars. Modern molecular breeding technologies may have great potential in breeding programs for the development of low-Cd cultivars, especially when coupled with conventional breeding. In this review, we provide a synthesis of low-Cd cereal breeding.
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Affiliation(s)
- Qin Chen
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Fei-Bo Wu
- Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
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34
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Ganie SA, Reddy ASN. Stress-Induced Changes in Alternative Splicing Landscape in Rice: Functional Significance of Splice Isoforms in Stress Tolerance. BIOLOGY 2021; 10:309. [PMID: 33917813 PMCID: PMC8068108 DOI: 10.3390/biology10040309] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/07/2021] [Revised: 04/01/2021] [Accepted: 04/06/2021] [Indexed: 12/20/2022]
Abstract
Improvements in yield and quality of rice are crucial for global food security. However, global rice production is substantially hindered by various biotic and abiotic stresses. Making further improvements in rice yield is a major challenge to the rice research community, which can be accomplished through developing abiotic stress-resilient rice varieties and engineering durable agrochemical-independent pathogen resistance in high-yielding elite rice varieties. This, in turn, needs increased understanding of the mechanisms by which stresses affect rice growth and development. Alternative splicing (AS), a post-transcriptional gene regulatory mechanism, allows rapid changes in the transcriptome and can generate novel regulatory mechanisms to confer plasticity to plant growth and development. Mounting evidence indicates that AS has a prominent role in regulating rice growth and development under stress conditions. Several regulatory and structural genes and splicing factors of rice undergo different types of stress-induced AS events, and the functional significance of some of them in stress tolerance has been defined. Both rice and its pathogens use this complex regulatory mechanism to devise strategies against each other. This review covers the current understanding and evidence for the involvement of AS in biotic and abiotic stress-responsive genes, and its relevance to rice growth and development. Furthermore, we discuss implications of AS for the virulence of different rice pathogens and highlight the areas of further research and potential future avenues to develop climate-smart and disease-resistant rice varieties.
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Affiliation(s)
| | - Anireddy S. N. Reddy
- Department of Biology and Program in Cell and Molecular Biology, Colorado State University, Fort Collins, CO 80523, USA
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35
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Das D, Sen P, Purkayastha S, Saha AK, Roy A, Rai P, Sen S, Saha S, Senapati BK, Biswas T, Bhattacharyya S. A perfect PCR based co-dominant marker for low grain-arsenic accumulation genotyping in rice. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 212:111960. [PMID: 33513481 DOI: 10.1016/j.ecoenv.2021.111960] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Revised: 01/15/2021] [Accepted: 01/18/2021] [Indexed: 06/12/2023]
Abstract
The development of low arsenic-accumulating varieties for the contaminated areas is one of the best options for reducing the dietary exposure of arsenic to human population through rice. In this study, grain-arsenic content in one hundred genotypes revealed a large variation ranging from 0.05 mg/kg to 0.49 mg/kg. Compared to high accumulating variety, Shatabdi, 6-8 times the transcript upregulation of Arsenic sequestering ATP binding cassette C1 type gene (ABCC1), was observed in first internode of low accumulating variety Gobindabhog when 5 mg/kg of arsenite was present in soil. A comparison of the genomic sequence of OsABCC1 identified 8 SNPs between the two genotypes; 5 in introns and 3 silent mutations in exons. We identified a PCR based co-dominant marker targeting an SNP (T/G) between the two genotypes, which clearly distinguished 100 genotypes into low (mean 0.14 mg/kg) and high (mean 0.35 mg/kg) accumulating groups. All aromatic genotypes, either long or small grain, carry the Gobindabhog-type ABCC1 allele and are low accumulators of arsenic. Gobindabhog allele carrying 62 RILs and NILs showed almost 40-50% less As-accumulation in grains relative to 84 RILs and NILs carrying Shatabdi type ABCC1-allele. The marker will be useful in introgression of low accumulating allele of OsABCC1 into high yielding photoperiod insensitive varietal backgrounds more easily and accurately.
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Affiliation(s)
- Dibakar Das
- Department of Genetics and Plant Breeding, Crop Research Unit, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, PIN 741252, West Bengal, India
| | - Poulomi Sen
- Department of Genetics and Plant Breeding, Crop Research Unit, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, PIN 741252, West Bengal, India
| | - Shampa Purkayastha
- Department of Genetics and Plant Breeding, Crop Research Unit, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, PIN 741252, West Bengal, India
| | - Arup Kumar Saha
- Department of Genetics and Plant Breeding, Crop Research Unit, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, PIN 741252, West Bengal, India
| | - Anirban Roy
- Department of Genetics and Plant Breeding, Crop Research Unit, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, PIN 741252, West Bengal, India
| | - Pooja Rai
- Department of Genetics and Plant Breeding, Crop Research Unit, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, PIN 741252, West Bengal, India
| | - Shubhrajyoti Sen
- Department of Genetics and Plant Breeding, Crop Research Unit, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, PIN 741252, West Bengal, India
| | - Shoumik Saha
- Department of Genetics and Plant Breeding, Crop Research Unit, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, PIN 741252, West Bengal, India
| | - Bijoy Kumar Senapati
- Department of Genetics and Plant Breeding, Crop Research Unit, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, PIN 741252, West Bengal, India
| | - Tirthankar Biswas
- College of Agriculture, Bidhan Chandra Krishi Viswavidyalaya, Chatna Campus, PIN 722132, West Bengal, India
| | - Somnath Bhattacharyya
- Department of Genetics and Plant Breeding, Crop Research Unit, Bidhan Chandra Krishi Viswavidyalaya, Mohanpur, Nadia, PIN 741252, West Bengal, India.
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36
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Rono JK, Le Wang L, Wu XC, Cao HW, Zhao YN, Khan IU, Yang ZM. Identification of a new function of metallothionein-like gene OsMT1e for cadmium detoxification and potential phytoremediation. CHEMOSPHERE 2021; 265:129136. [PMID: 33276998 DOI: 10.1016/j.chemosphere.2020.129136] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Revised: 11/07/2020] [Accepted: 11/25/2020] [Indexed: 05/27/2023]
Abstract
Cadmium (Cd) is a biologically non-essential and toxic heavy metal leaking to the environment via natural emission or anthropogenic activities, thereby contaminating crops and threatening human health. Metallothioneins (MTs) are a group of metal-binding proteins playing critical roles in metal allocation and homeostasis. In this study, we identified a novel function of OsMT1e from rice plants. OsMT1e was dominantly expressed in roots at all developmental stages and, to less extent, expressed in leaves at vegetative and seed filling stages. OsMT1e was mainly targeted to the nucleus and substantially induced by Cd exposure. Expression of OsMT1e in a yeast Cd-sensitive strain ycf1 conferred cellular tolerance to Cd, even though the ycf1 + OsMT1e cells accumulated more Cd than the control cells (ycf1 + pYES2). Both transgenic rice overexpressing (OX) and repressing OsMT1e by RNA interference (RNAi) were developed. Phenotypic analysis revealed that OsMT1e overexpression enhanced the rice growth concerning the increased shoot or root elongation, dry weight and chlorophyll contents, whereas the RNAi lines displayed a sensitive growth phenotype compared to wild-type. Assessment with 0.5, 2 and 10 μM Cd for two weeks revealed that the RNAi lines accumulated less Cd, while the OX lines had an increased Cd accumulation in root and shoot tissues. The contrasting Cd accumulation phenotypes between the OX and RNAi lines were further confirmed by a long-term study with 0.5 μM Cd for one month. Overall, the study unveiled a new function of OsMT1e in rice, which can be potentially used for engineering genotypes for phytoremediation or minimizing Cd in rice crops.
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Affiliation(s)
- Justice Kipkorir Rono
- Department of Biochemistry and Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Le Le Wang
- Department of Biochemistry and Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xue Chun Wu
- Department of Biochemistry and Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Hong Wei Cao
- Department of Biochemistry and Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Ya Ning Zhao
- Department of Biochemistry and Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Irfan Ullah Khan
- Department of Biochemistry and Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Zhi Min Yang
- Department of Biochemistry and Molecular Biology, College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
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37
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Fan W, Liu C, Cao B, Ma S, Hu J, Xiang Z, Zhao A. A meta-analysis of transcriptomic profiles reveals molecular pathways response to cadmium stress of Gramineae. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2021; 209:111816. [PMID: 33360213 DOI: 10.1016/j.ecoenv.2020.111816] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Revised: 12/04/2020] [Accepted: 12/15/2020] [Indexed: 06/12/2023]
Abstract
As a non-essential heavy metal, cadmium (Cd) is toxic to plants. In the last 15 years, over 70 transcriptome studies have been published to decipher the molecular response mechanism against Cd stress in different plants. To extract generalization results from transcriptomic data across different plants and obtain some hub genes that respond to Cd stress, we carried out a meta-analysis of 32 published datasets. Cluster analysis revealed that plant species played a more decisive role than the media used and exposure time in the transcriptome patterns of plant roots response to Cd. The datasets from a Gramineae-like (GL) group were closer in clustering. 838 DEGs were commonly Cd-regulated in at least nine of 18 GL datasets. Gene ontology and KEGG pathway analyses revealed that oxidative stress-related terms and lignin synthesis-related terms were significantly enriched. Mapman analysis revealed that these common DEGs were mainly involved in regulation, cellular response, secondary metabolism, transport, cell wall and lipid metabolism. In Oryza sativa, 15 DEGs were up-regulated in at least four of five HM (As, Cr, Cd, Hg and Pb) groups, such as Os10g0517500 (methionine gamma-lyase) and Os01g0159800 (bHLH107). Moreover, our datasets can be used to retrieve log2FC value of specific genes across 29 studies (48 datasets), which provides data reference for the subsequent selection of HM-related genes. Our results provide the basis for further understanding of Cd tolerance mechanisms in plants.
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Affiliation(s)
- Wei Fan
- State Key Laboratory of Silkworm Genome Biology, Key Laboratory of Sericultural Biology and Genetic Breeding, Ministry of Agriculture, Southwest University, Chongqing, PR China
| | - ChangYing Liu
- Key Laboratory of Coarse Cereal Processing, Ministry of Agriculture and Rural Affairs, Chengdu University, Chengdu, PR China
| | - Boning Cao
- State Key Laboratory of Silkworm Genome Biology, Key Laboratory of Sericultural Biology and Genetic Breeding, Ministry of Agriculture, Southwest University, Chongqing, PR China
| | - Shuyu Ma
- State Key Laboratory of Silkworm Genome Biology, Key Laboratory of Sericultural Biology and Genetic Breeding, Ministry of Agriculture, Southwest University, Chongqing, PR China
| | - Jie Hu
- State Key Laboratory of Silkworm Genome Biology, Key Laboratory of Sericultural Biology and Genetic Breeding, Ministry of Agriculture, Southwest University, Chongqing, PR China
| | - Zhonghuai Xiang
- State Key Laboratory of Silkworm Genome Biology, Key Laboratory of Sericultural Biology and Genetic Breeding, Ministry of Agriculture, Southwest University, Chongqing, PR China
| | - Aichun Zhao
- State Key Laboratory of Silkworm Genome Biology, Key Laboratory of Sericultural Biology and Genetic Breeding, Ministry of Agriculture, Southwest University, Chongqing, PR China.
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38
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Zhu S, Shi W, Jie Y. Overexpression of BnPCS1, a Novel Phytochelatin Synthase Gene From Ramie ( Boehmeria nivea), Enhanced Cd Tolerance, Accumulation, and Translocation in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2021; 12:639189. [PMID: 34211483 PMCID: PMC8239399 DOI: 10.3389/fpls.2021.639189] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2020] [Accepted: 05/21/2021] [Indexed: 05/10/2023]
Abstract
Phytochelatins (PCs) play important roles in the detoxification of and tolerance to heavy metals in plants. The synthesis of PCs is catalyzed by phytochelatin synthase (PCS), which is activated by heavy metal ions. In this study, we isolated a PCS gene, BnPCS1, from the bast fiber crop ramie (Boehmeria nivea) using the RACE (rapid amplification of cDNA ends) method. The full-length BnPCS1 cDNA is 1,949 bp in length with a 1,518 bp open reading frame (ORF) that encodes a 505 amino acid protein. The deduced BnPCS1 protein has a conserved N-terminus containing the catalytic triad Cys58, His164, Asp182, and a flexible C-terminal region containing a C371C372QETC376VKC379 motif. The BnPCS1 promoter region contains several cis-acting elements involved in phytohormone or abiotic stress responses. Subcellular localization analysis indicates that the BnPCS1-GFP protein localizes to the nucleus and the cytoplasm. Real-time PCR assays show that the expression of BnPCS1 is significantly induced by cadmium (Cd) and the plant hormone abscisic acid (ABA). Overexpression lines of BnPCS1 exhibited better root growth and fresh weight, lower level of MDA and H2O2, and higher Cd accumulation and translocation factor compared to the WT under Cd stress. Taken together, these results could provide new gene resources for phytoremediation of Cd-contaminated soils.
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Affiliation(s)
- Shoujing Zhu
- College of Life Sciences, Resources and Environment, Yichun University, Yichun, China
- Key Laboratory of Crop Growth and Development Regulation of Jiangxi Province, Yichun, China
- *Correspondence: Shoujing Zhu,
| | - Wenjuan Shi
- College of Life Sciences, Resources and Environment, Yichun University, Yichun, China
| | - Yucheng Jie
- Institute of Ramie, Hunan Agricultural University, Changsha, China
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39
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Majumdar S, Sachdev S, Kundu R. Salicylic acid mediated reduction in grain cadmium accumulation and amelioration of toxicity in Oryza sativa L. cv Bandana. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 205:111167. [PMID: 32827967 DOI: 10.1016/j.ecoenv.2020.111167] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2020] [Revised: 07/19/2020] [Accepted: 08/10/2020] [Indexed: 05/07/2023]
Abstract
Contamination of agricultural fields with Cadmium (Cd) due to several agricultural practices is increasing worldwide. The rice plants can easily take up Cd and accumulate it into different parts, including the grains, posing a threat to human health even at low concentration exposure. Several phytohormones, including Salicylic acid (SA) have been investigated since long for its alleviating properties under various biotic and abiotic stress conditions. In the present study, 100 μM SA application to ameliorate 25 μM Cd stress was studied for 72 h in hydroponics in Oryza sativa cv. Bandana seedlings. Pot experiments were done with same treatment condition and plants were grown till maturity. SA application to Cd exposed rice seedlings alleviated the stress condition, which was established by several physiological, biochemical, histochemical and gene expression analysis. SA treatment to Cd stressed seedlings showed elevated photosynthetic pigment content, on-protein thiol content and relieved the Cd induced growth inhibition considerably. It lowered the accumulation of ROS like, O2- and H2O2 with a regulated antioxidative enzymatic activity. SA application in Cd exposed rice seedlings had upregulated expression of OsHMA3 and OsPCS1 whereasOsNRAMP2 gene was downregulated. Co-application of SA and Cd led to higher yield and improved agronomic traits in comparison to only Cd exposed plants under pot experimentation. Daily intake of Cd and Carcinogenic risk were also reduced by 99.75% and 99.99% respectively in the SA treated Cd stressed plants. SA positively affected the growth and tolerance of rice seedlings to Cd stress. Hence, SA addition to Cd contaminated soil can ensure rice cultivation without posing health risk to consumers.
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Affiliation(s)
- Snehalata Majumdar
- Department of Botany, Centre of Advanced Study, University of Calcutta, 35 Ballygunge Circular Road, Kolkata, 700019, West Bengal, India
| | - Sonal Sachdev
- Division of Plant Biology, Bose Institute, P-1/12, CIT Road, Scheme VIIM, Kankurgachi, Kolkata, 700054, West Bengal, India
| | - Rita Kundu
- Department of Botany, Centre of Advanced Study, University of Calcutta, 35 Ballygunge Circular Road, Kolkata, 700019, West Bengal, India.
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40
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Tang Z, Fan F, Deng S, Wang D. Mercury in rice paddy fields and how does some agricultural activities affect the translocation and transformation of mercury - A critical review. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2020; 202:110950. [PMID: 32800226 DOI: 10.1016/j.ecoenv.2020.110950] [Citation(s) in RCA: 41] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Revised: 06/22/2020] [Accepted: 06/25/2020] [Indexed: 06/11/2023]
Abstract
Human exposure to methylmercury (MeHg) through rice consumption is raising health concerns. It has long been recognized that MeHg found in rice grain predominately originated from paddy soil. Anaerobic conditions in paddy fields promote Hg methylation, potentially leading to high MeHg concentrations in rice grain. Understanding the transformation and migration of Hg in the rice paddy system, as well as the effects of farming activities, are keys to assessing risks and developing potential mitigation strategies. Therefore, this review examines the current state of knowledge on: 1) sources of Hg in paddy fields; 2) how MeHg and inorganic Hg (IHg) are transformed (including abiotic and biotic processes); 3) how IHg and MeHg enter and translocate in rice plants; and 4) how regular farming activities (including the application of fertilizer, cultivation methods, choice of cultivar), affect Hg cycling in the paddy field system. Current issues and controversies on Hg transformation and migration in the paddy field system are also discussed.
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Affiliation(s)
- Zhenya Tang
- Faculty of Environmental Science & Engineering, Kunming University of Science &Technology, Kunming, China; Interdisciplinary Research Center for Agriculture Green Development in Yangtze River Basin, Southwest University, Chongqing, China.
| | - Fangling Fan
- School of Energy and Environment Science, Yunnan Normal University, Kunming, China.
| | - Shiping Deng
- Department of Plant and Soil Sciences, Oklahoma State University, Stillwater, OK, USA.
| | - Dingyong Wang
- Interdisciplinary Research Center for Agriculture Green Development in Yangtze River Basin, Southwest University, Chongqing, China; State Cultivation Base of Eco-agriculture for Southwest Mountainous Land, College of Resources and Environment, Southwest University, Chongqing, China.
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41
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Su H, Zou T, Lin R, Zheng J, Jian S, Zhang M. Characterization of a phytochelatin synthase gene from Ipomoea pes-caprae involved in cadmium tolerance and accumulation in yeast and plants. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 155:743-755. [PMID: 32866789 DOI: 10.1016/j.plaphy.2020.08.012] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Revised: 08/04/2020] [Accepted: 08/04/2020] [Indexed: 05/21/2023]
Abstract
Phytochelatin synthases (PCSs) play a crucial part in heavy metal tolerance in plants via the synthesis of phytochelatins (PCs), which can chelate heavy metals (HMs) in the vacuole and decrease cell damage. Plant PCSs are commonly designated as key genes for phytoremediation. In this study, we identified a PCS gene (IpPCS1) from Ipomoea pes-caprae and investigated its role in regulating cadmium (Cd) tolerance and accumulation. The expression of a truncated IpPCS1t in yeast could complement the Cd-sensitive phenotype of the ycf1Δ mutant strain, as well as improve the Cd tolerance of the wild-type yeast strain, while promoting Cd accumulation in the yeast cells. The expression of IpPCS1 was induced in I. pes-caprae plants under Cd treatment. Compared with IpPCS1, the lack of a C-terminal in IpPCS1t did not affect its Cd tolerance, but might restrict the zinc (Zn) detoxification in yeast. The overexpression of IpPCS1t in Arabidopsis could improve the Cd tolerance slightly and had little impact on Cd accumulation in transgenic plant. Our results indicated that IpPCS1 has certain potential application value in Cd tolerance and detoxification, therefore provides a useful genetic resource for enhancing Cd tolerance and improving the Cd phytoremediation capacity of plants or organisms. In addition, our research is the first time to discover a new possible Cd activation site in the C-terminal of IpPCS1.
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Affiliation(s)
- Huaxiang Su
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China; College of Life Sciences, University of the Chinese Academy of Sciences, Beijing, 100039, China
| | - Tao Zou
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China; College of Life Sciences, University of the Chinese Academy of Sciences, Beijing, 100039, China
| | - Ruoyi Lin
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China; College of Life Sciences, University of the Chinese Academy of Sciences, Beijing, 100039, China
| | - Jiexuan Zheng
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China; College of Life Sciences, University of the Chinese Academy of Sciences, Beijing, 100039, China
| | - Shuguang Jian
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China; Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Mei Zhang
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China; Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou, 510650, China.
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Wang C, Zheng L, Tang Z, Sun S, Ma JF, Huang XY, Zhao FJ. OASTL-A1 functions as a cytosolic cysteine synthase and affects arsenic tolerance in rice. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:3678-3689. [PMID: 32129444 DOI: 10.1093/jxb/eraa113] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2020] [Accepted: 02/28/2020] [Indexed: 06/10/2023]
Abstract
Arsenic (As) contamination in paddy soil can cause phytotoxicity and elevated As accumulation in rice grains. Arsenic detoxification is closely linked to sulfur assimilation, but the genes involved have not been described in rice. In this study, we characterize the function of OASTL-A1, an O-acetylserine(thiol) lyase, in cysteine biosynthesis and detoxification of As in rice. Tissue expression analysis revealed that OsOASTL-A1 is mainly expressed in roots at the vegetative growth stage and in nodes at the reproductive stage. Furthermore, the expression of OsOASTL-A1 in roots was strongly induced by As exposure. Transgenic rice plants expressing pOsOASTL-A1::GUS (β-glucuronidase) indicated that OsOASTL-A1 was strongly expressed in the outer cortex and the vascular cylinder in the root mature zone. Subcellular localization using OsOASTL-A1:eGFP (enhanced green fluorescent protein) fusion protein showed that OsOASTL-A1 was localized to the cytosol. In vivo and in vitro enzyme activity assays showed that OsOASTL-A1 possessed the O-acetylserine(thiol) lyase activity. Knockout of OsOASTL-A1 led to significantly lower levels of cysteine, glutathione, and phytochelatins in roots and increased sensitivity to arsenate stress. Furthermore, the osoastl-a1 knockout mutants reduced As accumulation in the roots, but increased As accumulation in shoots. We conclude that OsOASTL-A1 is the cytosolic O-acetylserine(thiol) lyase that plays an important role in non-protein thiol biosynthesis in roots for As detoxification.
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Affiliation(s)
- Chengcheng Wang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Lihua Zheng
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Zhong Tang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Shengkai Sun
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Jian Feng Ma
- Institute of Plant Science and Resources, Okayama University, Chuo, Kurashiki, Japan
| | - Xin-Yuan Huang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
| | - Fang-Jie Zhao
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China
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Gu L, Zhao M, Ge M, Zhu S, Cheng B, Li X. Transcriptome analysis reveals comprehensive responses to cadmium stress in maize inoculated with arbuscular mycorrhizal fungi. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2019; 186:109744. [PMID: 31627093 DOI: 10.1016/j.ecoenv.2019.109744] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2019] [Revised: 09/27/2019] [Accepted: 09/29/2019] [Indexed: 05/12/2023]
Abstract
Biological strategy of utilization of plants-microbe's interactions to remediate cadmium (Cd) contaminated soils is effective and practical. However, limited evidence at transcriptome level is available about how microbes work with host plants to alleviate Cd stress. In the present study, comparative transcriptomic analysis was performed between maize seedlings inoculated with arbuscular mycorrhizal (AM) fungi and non-AM fungi inoculation under distinct concentrations of CdCl2 (0, 25, and 50 mg per kg soil). Significantly higher levels of Cd were found in root tissues of maize colonized by AM fungi, whereas, Cd content was reduced as much as 50% in leaf tissues when compared to non-AM seedlings, indicating that symbiosis between AM fungi and maize seedlings can significantly block translocation of Cd from roots to leaf tissues. Moreover, a total of 5827 differentially expressed genes (DEG) were determined and approximately 68.54% DEGs were downregulated when roots were exposed to high Cd stress. In contrast, 67.16% (595) DEGs were significantly up-regulated when seedlings were colonized by AM fungi under 0 mg CdCl2. Based on hierarchical clustering analysis, global expression profiles were split into eight distinct clusters. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis revealed that hundreds of genes functioning in plant hormone signal transduction, mitogen-activated protein kinase (MAPK) signaling pathway and glutathione metabolism were enriched. Furthermore, MapMan pathway analysis indicated a more comprehensive overview response, including hormone metabolism, especially in JA, glutathione metabolism, transcription factors and secondary metabolites, to Cd stress in mycorrhizal maize seedlings. These results provide an overview, at the transcriptome level, of how inoculation of maize seedlings by AM fungi could facilitate the relief of Cd stress.
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Affiliation(s)
- Longjiang Gu
- National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei, 230036, China; Anhui Province Key Laboratory of Crop Biology, Anhui Agricultural University, Hefei 230036, China
| | - Manli Zhao
- Schools of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
| | - Min Ge
- Schools of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
| | - Suwen Zhu
- National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei, 230036, China; Schools of Life Sciences, Anhui Agricultural University, Hefei, 230036, China
| | - Beijiu Cheng
- National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei, 230036, China; Schools of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.
| | - Xiaoyu Li
- National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei, 230036, China; Anhui Province Key Laboratory of Crop Biology, Anhui Agricultural University, Hefei 230036, China.
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Li M, Stragliati L, Bellini E, Ricci A, Saba A, Sanità di Toppi L, Varotto C. Evolution and functional differentiation of recently diverged phytochelatin synthase genes from Arundo donax L. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:5391-5405. [PMID: 31145784 PMCID: PMC6793451 DOI: 10.1093/jxb/erz266] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2018] [Accepted: 05/24/2019] [Indexed: 05/15/2023]
Abstract
Phytochelatin synthases (PCSs) play pivotal roles in the detoxification of heavy metals and metalloids in plants; however, little information on the evolution of recently duplicated PCS genes in plant species is available. Here we characterize the evolution and functional differentiation of three PCS genes from the giant reed (Arundo donax L.), a biomass/bioenergy crop with remarkable resistance to cadmium and other heavy metals. Phylogenetic reconstruction with PCS genes from fully sequenced monocotyledonous genomes indicated that the three A. donax PCSs, namely AdPCS1-3, form a monophyletic clade. The AdPCS1-3 genes were expressed at low levels in many A. donax organs and displayed different levels of cadmium-responsive expression in roots. Overexpression of AdPCS1-3 in Arabidopsis thaliana and yeast reproduced the phenotype of functional PCS genes. Mass spectrometry analyses confirmed that AdPCS1-3 are all functional enzymes, but with significant differences in the amount of the phytochelatins synthesized. Moreover, heterogeneous evolutionary rates characterized the AdPCS1-3 genes, indicative of relaxed natural selection. These results highlight the elevated functional differentiation of A. donax PCS genes from both a transcriptional and an enzymatic point of view, providing evidence of the high evolvability of PCS genes and of plant responsiveness to heavy metal stress.
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Affiliation(s)
- Mingai Li
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige (TN) , Italy
| | - Luca Stragliati
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università degli studi di Parma, Parco Area delle Scienze, Parma, Italy
| | - Erika Bellini
- Dipartimento di Biologia, Università di Pisa, Pisa, Italy
| | - Ada Ricci
- Dipartimento di Scienze Chimiche, della Vita e della Sostenibilità Ambientale, Università degli studi di Parma, Parco Area delle Scienze, Parma, Italy
| | - Alessandro Saba
- Dipartimento di Patologia Chirurgica, Medica, Molecolare e dell’Area Critica, Università di Pisa, Pisa, Italy
| | | | - Claudio Varotto
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige (TN) , Italy
- Correspondence: or
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Yazdi M, Kolahi M, Mohajel Kazemi E, Goldson Barnaby A. Study of the contamination rate and change in growth features of lettuce (Lactuca sativa Linn.) in response to cadmium and a survey of its phytochelatin synthase gene. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2019; 180:295-308. [PMID: 31100594 DOI: 10.1016/j.ecoenv.2019.04.071] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2019] [Revised: 04/18/2019] [Accepted: 04/24/2019] [Indexed: 05/09/2023]
Abstract
Crops can become contaminated when grown in soils containing heavy metals. Cadmium is a heavy metal that poses a significant health risk to humans. The purpose of this study was to evaluate the effect of cadmium on lettuce (Lactuca sativa Linn) and the contamination risk of lettuce grown in cadmium environments. The results showed that photosynthesis and growth parameters were significantly affected by cadmium. Lettuce has the ability to absorb large amounts of cadmium from the contaminated environment and so is a cadmium hyperaccumulator plant. The study showed that approximately 35% of the total absorbed cadmium is transmitted to aerial and edible parts of lettuce. This study was undertaken as lettuce has the ability to absorb and accumulate high levels of cadmium. There are however are no reports on the PCS gene and the potential for high cadmium accumulation in lettuce. The bioinformatics study revealed that lettuce has two phytochelatin synthase genes that produce 6 PCSs through splicing leading to the ability of lettuce to store high levels of cadmium. These six sequences although different in length have high similarity. Sequence structure, cellular location, three-dimensional structure, phylogeny and a comparison of their catalytic power were evaluated. The high accumulation of cadmium in lettuce and the presence of several PCSs contribute to the accumulation of cadmium in aerial tissues. The cultivation of lettuce in contaminated environments led us to evaluate suspected farms for the presence of cadmium in produce. Lettuce grown in industrial environments contaminated with cadmium can pose a serious threat to human health.
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Affiliation(s)
- M Yazdi
- Department of Genetics, Faculty of Science, Shahid Chamran University of Ahvaz, Ahvaz, Iran
| | - M Kolahi
- Department of Biology, Faculty of Science, Shahid Chamran University of Ahvaz, Ahvaz, Iran.
| | - E Mohajel Kazemi
- Department of Plant Biology, Faculty of Natural Science, University of Tabriz, Tabriz, Iran
| | - A Goldson Barnaby
- Department of Chemistry, University of the West Indies, Mona, Jamaica
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Chen J, Zou W, Meng L, Fan X, Xu G, Ye G. Advances in the Uptake and Transport Mechanisms and QTLs Mapping of Cadmium in Rice. Int J Mol Sci 2019; 20:ijms20143417. [PMID: 31336794 PMCID: PMC6678204 DOI: 10.3390/ijms20143417] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2019] [Revised: 07/10/2019] [Accepted: 07/11/2019] [Indexed: 02/07/2023] Open
Abstract
Cadmium (Cd), as a heavy metal, presents substantial biological toxicity and has harmful effects on human health. To lower the ingress levels of human Cd, it is necessary for Cd content in food crops to be reduced, which is of considerable significance for ensuring food safety. This review will summarize the genetic traits of Cd accumulation in rice and examine the mechanism of Cd uptake and translocation in rice. The status of genes related to Cd stress and Cd accumulation in rice in recent years will be summarized, and the genes related to Cd accumulation in rice will be classified according to their functions. In addition, an overview of quantitative trait loci (QTLs) mapping populations in rice will be introduced, aiming to provide a theoretical reference for the breeding of rice varieties with low Cd accumulation. Finally, existing problems and prospects will be put forward.
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Affiliation(s)
- Jingguang Chen
- CAAS-IRRI Joint Laboratory for Genomics-Assisted Germplasm Enhancement, Agricultural Genomics Institute in Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Wenli Zou
- CAAS-IRRI Joint Laboratory for Genomics-Assisted Germplasm Enhancement, Agricultural Genomics Institute in Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China
| | - Lijun Meng
- CAAS-IRRI Joint Laboratory for Genomics-Assisted Germplasm Enhancement, Agricultural Genomics Institute in Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.
| | - Xiaorong Fan
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China.
| | - Guohua Xu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Guoyou Ye
- CAAS-IRRI Joint Laboratory for Genomics-Assisted Germplasm Enhancement, Agricultural Genomics Institute in Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China
- Strategic Innovation Platform, International Rice Research Institute, DAPO Box 7777, Metro Manila 1226, Philippines
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Bari MA, Akther MS, Reza MA, Kabir AH. Cadmium tolerance is associated with the root-driven coordination of cadmium sequestration, iron regulation, and ROS scavenging in rice. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2019; 136:22-33. [PMID: 30639786 DOI: 10.1016/j.plaphy.2019.01.007] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2018] [Revised: 01/04/2019] [Accepted: 01/05/2019] [Indexed: 05/08/2023]
Abstract
Excess cadmium (Cd) is a serious threat to agriculture and the environment. High Cd availability showed no significant decline in growth, chlorophyll synthesis, soluble protein, cell and membrane stability in Sonarbangla (Cd-tolerant), while these were severely affected in BRRI 72 (Cd-sensitive). Atomic absorption spectroscopy analysis demonstrated a huge increment of Cd and Fe in root and shoot of BRRI 72; however, Sonarbangla only exhibited a significant increase of Cd in roots. It suggests that excess Cd in Sonarbangla possibly retained in roots through vacuolar sequestration without interfering cell functions. This was further confirmed by the increased accumulation of cysteine, glutathione, and phytochelatin along with OsPCS1 and OsHMA3 upregulation, possibly facilitated by nitric oxide in roots of Sonarbangla. Further, Fe chelate reductase activity in conjunction with the genes (OsFRO1, OsNRAMP1, OsIRT1, and OsYSL15) associated with Fe availability significantly upregulated in BRRI 72 but not in Sonarbangla in response to Cd. It advises that Fe acquisition and transport were tightly regulated in Cd-tolerant Sonarbangla. Furthermore, elevated CAT, APX, GR, NO in root along with shoot sugar helps rice plants to withstand Cd-induced oxidative damage. Finally, reciprocal grafting combining Sonarbangla rootstock with either BRRI 72 or Sonarbangla scion showed Sonarbangla type tolerance along with no changes of H2O2 and Fe reductase activity in roots under high Cd. It indicates that the signal inducing the responses to adjust Cd stress is originated in the root system. These messages deliver essential background for further breeding program to produce Cd-free rice.
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Affiliation(s)
- Md Azizul Bari
- Institute of Biological Sciences, University of Rajshahi, Rajshahi, 6205, Bangladesh; Molecular Plant Physiology Laboratory, Department of Botany, University of Rajshahi, Rajshahi, 6205, Bangladesh; Department of Genetic Engineering and Biotechnology, University of Rajshahi, Rajshahi, 6205, Bangladesh
| | - Mst Salma Akther
- Molecular Plant Physiology Laboratory, Department of Botany, University of Rajshahi, Rajshahi, 6205, Bangladesh
| | - Md Abu Reza
- Department of Genetic Engineering and Biotechnology, University of Rajshahi, Rajshahi, 6205, Bangladesh
| | - Ahmad Humayan Kabir
- Molecular Plant Physiology Laboratory, Department of Botany, University of Rajshahi, Rajshahi, 6205, Bangladesh.
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Filiz E, Saracoglu IA, Ozyigit II, Yalcin B. Comparative analyses of phytochelatin synthase (PCS) genes in higher plants. BIOTECHNOL BIOTEC EQ 2019. [DOI: 10.1080/13102818.2018.1559096] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Affiliation(s)
- Ertugrul Filiz
- Department of Crop and Animal Production, Cilimli Vocational School, Duzce University, Duzce, Turkey
| | | | - Ibrahim Ilker Ozyigit
- Department of Biology, Faculty of Science and Arts, Marmara University, Istanbul, Turkey
- Department of Biology, Faculty of Science, Kyrgyz-Turkish Manas University, Bishkek, Kyrgyzstan
| | - Bahattin Yalcin
- Department of Chemistry, Faculty of Science and Arts, Marmara University, Istanbul, Turkey
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Shri M, Singh PK, Kidwai M, Gautam N, Dubey S, Verma G, Chakrabarty D. Recent advances in arsenic metabolism in plants: current status, challenges and highlighted biotechnological intervention to reduce grain arsenic in rice. Metallomics 2019; 11:519-532. [PMID: 30672944 DOI: 10.1039/c8mt00320c] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Arsenic (As), classified as a “metalloid” element, is well known for its carcinogenicity and other toxic effects to humans.
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Affiliation(s)
- Manju Shri
- Academy of Scientific and Innovative Research (AcSIR)
- Ghaziabad
- India
| | - Pradyumna Kumar Singh
- Academy of Scientific and Innovative Research (AcSIR)
- Ghaziabad
- India
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
| | - Maria Kidwai
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
- India
| | - Neelam Gautam
- Academy of Scientific and Innovative Research (AcSIR)
- Ghaziabad
- India
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
| | - Sonali Dubey
- Academy of Scientific and Innovative Research (AcSIR)
- Ghaziabad
- India
| | - Giti Verma
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
- India
| | - Debasis Chakrabarty
- Academy of Scientific and Innovative Research (AcSIR)
- Ghaziabad
- India
- Genetics and Molecular Biology Division
- CSIR-National Botanical Research Institute
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