Functional groups of marine ciliated protozoa and their relationships to water quality

Continuous warming drives the colonization dynamics of periphytic ciliate fauna in marine environments

In order to evaluate the influence of global warming on the ecosystem processes in marine environments, the changes in colonization dynamics of periphytic microbiota were studied using the periphytic ciliate communities as the test organism fauna under a continuous warming gradient of 22℃ (control), 25℃, 28℃, 31℃, and 34 ℃. The results demonstrated that (1) the test ciliate communities generally showed a similar temporal pattern in within the colonization process under the water temperatures from 22 up to 28℃; however, (2) the colonization dynamics were significantly changed, and the fitness of colonization curves to the MacArthur-Wilson model equation was failed under the temperature increased by 6 ℃, and (3) the loading or assimilative capacity of the test aquatic ecosystem was decreased with the increase of water temperature. Therefore, this study suggests that continuous warming may significantly drive the colonization dynamics of periphytic ciliates in marine ecosystems.

Antibiotic nitrofurazone drives the functional dynamics of periphytic protozoan fauna in marine environments

The use of functional traits of a community as a method to measure its functional dynamics in response to environmental change has gained attention because trait-based approaches offer systematic opportunities to understand the interactions between species diversity and ecosystem function. However, the relationship between functional traits of periphytic protozoa and contamination of aquatic habitats with antibiotics is poorly understood. In this study, we investigated the influence of the antibiotic nitrofurazone on functional traits of marine periphytic protozoan fauna. For this purpose, the protozoan assemblages were collected from coastal waters of the Yellow Sea at Qingdao, northern China, during four seasons of a one-year cycle using glass microscope slides as artificial substrates. The test protozoan communities were then exposed to various treatments of nitrofurazone in laboratory bioassay experiments. Our results demonstrated that the modalities of the functional traits of protozoan communities were generally driven by nitrofurazone toxicity. Briefly, R-mode linked to Q-mode (RLQ) and fourth-corner analyses revealed strong positive correlations between functional traits and nitrofurazone treatments. Trait syndromes in terms of body length, width, weight, height, and size to volume ratios were significantly influenced by nitrofurazone exposure. In particular, small and medium body size species of different feeding types, i.e., algivores, bacterivores, raptors or non-selectives, were more sensitive than other protozoan species to higher concentrations of nitrofurazone. Our findings demonstrate that antibiotic toxicity is likely to affect periphytic protozoan community function, shape the functional processes, and induce toxic responses in the community. The findings of this study suggest that periphytic protozoan communities and their functional traits are suitable bioindicators for evaluating the ecotoxicity of nitrofurazone in marine environments.

Use of functional units of periphytic protozoa for monitoring water quality in marine ecosystems: bioindicator redundancy

Although periphytic protozoan communities have long been used for the bioassessment of water quality, their utility is hampered by functional redundancy, leading to high "signal-to-noise" ratios. In this study, a 1-year baseline survey of periphytic protozoan communities was carried out in coastal waters of the Yellow Sea, northern China, in order to determine redundancy levels in conditions of differing water quality. Samples were collected at four sampling sites along a pollution gradient. Environmental variables such as salinity, chemical oxygen demand (COD), and concentrations of dissolved oxygen (DO), soluble reactive phosphates (SRP), ammonium nitrogen (NH4-N), and nitrate nitrogen (NO3-N) were measured to compare with biotic factors. A total of 53 functional units (FUs) were identified from 144 observed protozoan species based on four biological traits, i.e., feeding type, body size, movement type, and source of food supply. For reducing the "signal-to-noise" ratios of species-abundance/biomass data, the peeling procedure was used to identify the bioindicator redundancy levels based on these FUs. Three consecutive subsets of response units (RU1-RU3) with correlation coefficients > 0.75 of the full FU dataset were identified, comprising 12 FUs, 21 FUs, and 9 FUs, respectively. Algivores and bacterivores were dominant in RU1 and RU2 among the polluted sites, whereas raptors were dominant in RU3 at the unpolluted site. In terms of relative abundance, RU1 was the primary contributor to the protozoan communities during the 1-year cycle and its relative abundance increased with the increasing pollution, whereas RU2 and RU3, with complementary temporal distributions, generally decreased with increasing pollution. Ordinations based on bootstrapped average analyses revealed a significant variation in the functional pattern of all three RUs among the four sampling sites. Biological-environmental match analysis demonstrated that the variability was driven by the increasing concentrations of nutrients (e.g., NH4-N, NO3-N, and PO4-P) and decreasing concentrations of DO (P < 0.05). There were high levels of functional redundancy among periphytic protozoan communities which could be used as bioindicators of marine water quality.

Evaluation of Three Prokaryote Primers for Identification of Prokaryote Community Structure and Their Abode Preference in Three Distinct Wetland Ecosystems

The ultimate role of prokaryote (bacteria and archaea), the decomposer of the wetland ecosystem, depends on its community structure and its interaction with the environment. The present study has used three universal prokaryote primers to compare prokaryote community structure and diversity of three distinctly different wetlands. The study results revealed that α-diversity indices and phylogenetic differential abundance patterns did not differ significantly among primers, but they did differ significantly across wetlands. Microbial community composition revealed a distinct pattern for each primer in each wetland. Overall comparison of prokaryote communities in sediments of three wetlands revealed the highest prokaryote richness and diversity in Bhomra (freshwater wetland) followed by Malencho (brackish-water wetland) and East Kolkata wetland (EKW) (sewage-fed wetland). Indicator genus analysis identified 21, 4, and 29 unique indicator genera, having preferential abode for Bhomra, EKW, and Malencho, respectively. Prediction of potential roles of these microbes revealed a preference for sulfate-reducing microbes in Malencho and methanogens in Bhomra. The distinct phylogenetic differential abundance pattern, microbial abode preference, and their potential functional role predict ecosystem variables shaping microbial diversity. The variation in community composition of prokaryotes in response to ecosystem variables can serve as the most sensitive bioindicator of wetland ecosystem assessment and management.

Integrative taxonomy and molecular phylogeny of three poorly known tintinnine ciliates, with the establishment of a new genus (Protista; Ciliophora; Oligotrichea)

BACKGROUND

The taxonomic classification of the suborder Tintinnina Kofoid & Campbell, 1929, a species-rich group of planktonic ciliated protistans with a characteristic lorica, has long been ambiguous largely due to the lack of cytological and molecular data for most species. Tintinnopsis is the largest, most widespread, and most taxonomically complex genus within this group with about 170 species occurring in nearshore waters. Previous molecular phylogenetic studies have revealed that Tintinnopsis is polyphyletic.

RESULTS

Here we document the live morphology, infraciliature, gene sequences, and habitat characteristics of three poorly known tintinnine species, viz. Tintinnopsis karajacensis Brandt, 1896, Tintinnopsis gracilis Kofoid & Campbell, 1929, and Tintinnopsis tocantinensis Kofoid & Campbell, 1929, isolated from the coastal waters of China. Based on a unique cytological feature (i.e., an elongated ciliary tuft with densely arranged kinetids) in the former two species, Antetintinnopsis gen. nov. is erected with Antetintinnopsis hemispiralis (Yin, 1956) comb. nov. (original combination: Tintinnopsis hemispiralis Yin, 1956) designated as the type species. Moreover, A. karajacensis (Brandt, 1896) comb. nov. (original combination: Tintinnopsis karajacensis Brandt, 1896) and A. gracilis (Kofoid & Campbell, 1929) comb. nov. (original combination: Tintinnopsis gracilis Kofoid & Campbell, 1929) are placed in a highly supported clade that branches separately from Tintinnopsis clades in phylogenetic trees based on SSU rDNA and LSU rDNA sequence data, thus supporting the establishment of the new genus. One other species is assigned to Antetintinnopsis gen. nov., namely A. subacuta (Jörgensen, 1899) comb. nov. (original combination Tintinnopsis subacuta Jörgensen, 1899).

CONCLUSIONS

The findings of the phylogenetic analyses support the assertion that cytological characters are taxonomically informative for tintinnines. This study also contributes to the broadening of our understanding of the tintinnine biodiversity and evolution.

Spatial variation in ciliate communities with respect to water quality in the Delhi NCR stretch of River Yamuna, India

The River Yamuna emerges from Saptarishi Kund, Yamunotri and merge with River Ganges at Allahabad, India. Anthropogenic stress has affected the water quality of the river Yamuna drastically in the stretch traversing Delhi and its satellite towns (National Capital Region, NCR). In the present study, effect of water quality on the microbial life in the River Yamuna was analyzed using ciliate communities (Protista, Ciliophora) as bio-indicators. Water samples were collected from six sampling sites chosen according to the levels of pollution along the river and water quality was analysed using standard physicochemical factors. As the river traverses Delhi NCR, water quality deteriorates considerably as indicated by the Water Quality Index at the selected sampling sites. Seventy-four ciliate species representing nine classes were recorded. Based on the Shannon diversity index, maximum species diversity was found at the point where the river enters Delhi. The saprobity index showed the river water was beta-mesosaprobic when the river enters Delhi and alpha-mesosaprobic at downstream sites after the first major drain outfall. Significant relationship between the spatial variation in ciliate communities and abiotic parameters indicate that ciliates can be used as effective bioindicators of pollution in the River Yamuna.

Three redescriptions in Tintinnopsis (Protista: Ciliophora: Tintinnina) from coastal waters of China, with cytology and phylogenetic analyses based on ribosomal RNA genes

BACKGROUND

The taxonomy of tintinnine ciliates is vastly unresolved because it has traditionally been based on the lorica (a secreted shell) and it has only recently incorporated cytological and molecular information. Tintinnopsis, the most speciose tintinnine genus, is also the most problematic: it is known to be non-monophyletic, but it cannot be revised until more of its species are studied with modern methods.

RESULTS

Here, T. hemispiralis Yin, 1956, T. kiaochowensis Yin, 1956, and T. uruguayensis Balech, 1948, from coastal waters of China, were studied. Lorica and cell features were morphometrically investigated in living and protargol-stained specimens, and sequences of three ribosomal RNA (rRNA) loci were phylogenetically analyzed. The three species show a complex ciliary pattern (with ventral, dorsal, and posterior kineties and right, left, and lateral ciliary fields), but differ in lorica morphology, details of the somatic ciliature and rRNA gene sequences. Tintinnopsis hemispiralis is further distinguished by a ciliary tuft (a ribbon of very long cilia originated from the middle portion of the ventral kinety and extending out of the lorica) and multiple macronuclear nodules. Both T. kiaochowensis and T. uruguayensis have two macronuclear nodules, but differ in the number of somatic kineties and the position of the posterior kinety. Two neotypes are fixed for T. hemispiralis and T. kiaochowensis to stabilize the species names objectively, mainly because of the previous unavailability of type materials. By phylogenetic analysis and comparison with closely-related species, we infer that the ciliary tuft and details such as the commencement of the rightmost kinety in the lateral ciliary field are synapomorphies that may help clarify the systematics of Tintinnopsis-like taxa.

CONCLUSION

The redescriptions of three poorly known Tintinnopsis species, namely T. hemispiralis, T. kiaochowensis, and T. uruguayensis firstly revealed their ciliary patterns and rRNA sequences. This study expands knowledge and database of tintinnines and helps in identifying potential synapomorphies for future taxonomic rearrangements.

High throughput shotgun sequencing of eRNA reveals taxonomic and derived functional shifts across a benthic productivity gradient

Benthic macrofauna is regularly used in monitoring programmes, however the vast majority of benthic eukaryotic biodiversity lies mostly in microscopic organisms, such as meiofauna (invertebrates < 1 mm) and protists, that rapidly responds to environmental change. These communities have traditionally been hard to sample and handle in the laboratory, but DNA sequencing has made such work less time consuming. While DNA sequencing captures both alive and dead organisms, environmental RNA (eRNA) better targets living organisms or organisms of recent origin in the environment. Here, we assessed the biodiversity of three known bioindicator microeukaryote groups (nematodes, foraminifera, and ciliates) in sediment samples collected at seven coastal sites along an organic carbon (OC) gradient. We aimed to investigate if eRNA shotgun sequencing can be used to simultaneously detect differences in (i) biodiversity of multiple microeukaryotic communities; and (ii) functional feeding traits of nematodes. Results showed that biodiversity was lower for nematodes and foraminifera in high OC (6.2%-6.9%), when compared to low OC sediments (1.2%-2.8%). Dissimilarity in community composition increased for all three groups between Low OC and High OC, as well as the classified feeding type of nematode genera (with more nonselective deposit feeders in high OC sediment). High relative abundant genera included nematode Sabatieria and foraminifera Elphidium in high OC, and Cryptocaryon-like ciliates in low OC sediments. Considering that future sequencing technologies are likely to decrease in cost, the use of eRNA shotgun sequencing to assess biodiversity of benthic microeukaryotes could be a powerful tool in recurring monitoring programmes.

Composition and distribution of planktonic ciliates with indications to water quality in a shallow hypersaline lagoon (Pulicat Lake, India)

Planktonic ciliate composition and distribution together with physicochemical variables were investigated in a shallow hypersaline lagoon, Pulicat, India, during three seasons, i.e., pre-monsoon (PRM), monsoon (MON), and post-monsoon (POM). The low freshwater inflow, evaporation, and closure of the lake mouth were the main factors for the hypersaline conditions in Pulicat Lake. The average depth and salinity were 1.8 ± 0.12 m (0.8 to 2.8 m) and 35.3 ± 1.68 (12.5 to 61), respectively. A total of 29 ciliate taxa belonging to 18 genera and five classes were identified. Strombidium conicum (24%) was the dominant species followed by Euplotes sp. (10.7%) and Stenosomella sp. (7.02%). Spirotrichea (84%) was the dominant class followed by Oligohymenophorea (9.6%) and Heterotrichea (5.8%). Fabrea salina, a typical species in hypersaline systems, was abundant at locations where the salinity was more than 35. Multivariate analysis using the Bray-Curtis similarity, followed by SIMPROF (Similarity Percentage Analysis), on ciliate abundance data revealed three ciliate assemblages characterizing south, central, and north of the lake at 40% similarity (SIMPROF, cophenetic correlation = 0.622, P = 5%). Both ciliate abundance and chlorophyll-a were positively correlated with salinity. Species richness and evenness were higher in the south sector when compared with those in the other two sectors. Biotic-environmental interaction through canonical correspondence analysis (CCA) inferred that the combined effects of salinity, chlorophyll-a, and nutrient levels are the key factors responsible for the distribution of the ciliate species, suggesting that ciliates can be considered to be potential bioindicators of water quality.

Warming Effects on Periphyton Community and Abundance in Different Seasons Are Influenced by Nutrient State and Plant Type: A Shallow Lake Mesocosm Study

Periphyton plays an important role in lake ecosystems processes, especially at low and intermediate nutrient levels where periphyton contribution to primary production can be similar to or exceed that of phytoplankton. Knowledge of how periphyton responds to key drivers such as climate change and nutrient enrichment is, therefore, crucial. We conducted a series of mesocosm experiments over four seasons to elucidate the responses of periphyton communities to nutrient (low and high, TN-0.33 mg L-1 TP-7.1 μg L-1 and TN-2.40 mg L-1 TP-165 μg L-1, respectively), temperature (ambient, IPCC A2 scenario and A2 + 50%) and plant type (two submerged macrophytes with different morphological structural complexity: Potamogeton crispus and Elodea canadensis, and their corresponding plastic imitations with similar size and structure). We found a noticeable seasonality in the abundance and composition of periphyton. In spring and summer, periphyton abundances were significantly higher in the turbid-high-nutrient state than in the clear-low-nutrient state, and in summer they were notably higher at ambient temperature than in climate scenario A2 and A2 + 50%. In contrast, periphyton abundances in autumn and winter were not influenced by nutrient and temperature, but they were notably higher on plants with a more complex morphological structure than simple ones. The genus composition of periphyton was significantly affected by nutrient-temperature interactions in all seasons and by plant type in winter. Moreover, periphyton functional composition exhibited noticeable seasonal change and responded strongly to nutrient enrichment and temperature rise in spring, summer, and autumn. Our results suggest that the effect of warming on periphyton abundance and composition in the different seasons varied with nutrient state and host plant type in these mesocosms, and similar results may likely be found under field conditions.

Are tintinnids picky grazers: Feeding experiments on a mixture of mixotrophic dinoflagellates and implications for red tide dynamics

To understand and predict the outbreak of red tides, which are often dominated by mixotrophic dinoflagellates (MTDs), the effects of "top-down" control by co-occurring predators on red-tide MTDs should be taken into consideration. We studied the numerical and functional responses of the tintinnid ciliate Favella ehrenbergii feeding on two red-tide MTDs, Scrippsiella trochoidea and Heterocapsa triquetra, under single and mixed prey conditions. Our results suggest that a mixed diet could support a better growth of predators compared to a monodiet. In addition, the predators preferred to graze S. trochoidea in the mixed diets, suggesting that predators may switch their feeding preference. The grazing by tintinnid predators could potentially inhibit the outbreaks of red tides dominated by MTDs. The findings in this study provide basic data and new insights for understanding the complex predator-prey relationships in marine microbial food webs, and the dynamics of red tides dominated by MTDs.

Spatial variations in trophic-functional patterns of periphytic ciliates and indications to water quality in coastal waters of the Yellow Sea

To evaluate the water quality status using ecological features of the periphytic ciliate communities, a 1-year (Jan. to Dec., 2016) investigation was conducted in coastal waters of the Yellow Sea, northern China. Four trophic-functional groups (TFgrs) were recorded from a total of 141 species-abundance dataset: algivores (A); bacterivores (B); non-selectives (N); and predators (R), comprising of 65, 34, 26, and 16 species, respectively. In terms of species number, TFgr A was predominant in clean areas while TFgrs B and N were dominant in heavy polluted areas and TFgr R was dominant in slightly polluted area. The trophic-functional patterns of the periphytic ciliate communities showed a clear spatial variation within the pollution gradient. Trophic-functional trait diversity measures represented a clear increasing trend from polluted stations to the clean area regarding the pollution gradients. Multivariate correlation and best matching analysis revealed that the spatial pattern of the trophic-functional groupings were significantly shaped by environmental variable nutrients and chemical oxygen demand, alone or in combination with pH, dissolved oxygen, salinity, and transparency. Thus, we suggest that the ecological features based on the trophic-functional patterns of periphytic ciliate communities might be used for bioassessment of water quality in marine ecosystems.

Environmental status assessment using biological traits analyses and functional diversity indices of benthic ciliate communities

In this study, we tested the hypothesis that the functional diversity of benthic ciliates has high potential to monitor marine ecological status. Therefore, we investigated the spatial and temporal variation of functional diversity of benthic ciliates in the Yangtze Estuary during one year using biological traits analyses and functional diversity indices. Traits and community compositions showed clear spatial and temporal variations. Among a variety of biological traits, feeding type and body size emerged as strongest predictable variables. Functional divergence (FDiv) had an advantage over two other functional diversity indices, as well as over classical diversity measures (i.e. richness, evenness, Shannon-Wiener) to infer environmental status. Significant correlations between biological traits, FDiv and environmental variables (i.e. nutrients, temperature, salinity) suggested that functional diversity of benthic ciliates might be used as a bio-indicator in environmental status assessments. Further mandatory researches need to implement functional diversity of ciliates in routine monitoring programs were discussed.

Trophic-functional patterns of biofilm-dwelling ciliates at different water depths in coastal waters of the Yellow Sea, northern China

Vertical variations in trophic-functional patterns of biofilm-dwelling ciliates were studied in coastal waters of the Yellow Sea, northern China. A total of 50 species were identified and assigned to four trophic-functional groups (TFgrs): algivores (A), bacterivorous (B), non-selective (N) and raptors (R). The trophic-functional structures of the ciliate communities showed significant variability among different water depths: (1) with increasing water depth, relative species numbers and relative abundances of groups A and R decreased sharply whereas those of groups B and N increased gradually; (2) in terms of the frequency of occurrences, group A dominated at depths of 1-3.5 m whereas group B dominated at 5 m, while in terms of the probability density function of the trophic-functional spectrum, group A was the highest contributor at 1 m and group B was highest at the other three depths; (3) distance-based redundancy analyses revealed significant differences in trophic-functional patterns among the four depths, except between 2 and 3.5 m (P > 0.05); and (4) the trophic-functional trait diversity increased from 1 to 3.5 m and decreased sharply at 5 m. Our results suggest that the biofilm-dwelling ciliates maintain a stable trophic-functional pattern and high biodiversity at depths of 1-3.5 m.

Indication of spatial variations in annual cycles of functional groups of planktonic ciliates to environmental change in marine ecosystems

The indication of spatial variations in annual cycles of functional groups of planktonic ciliates to environmental changes was studied in a bay, northern Yellow Sea. Samples were biweekly collected at five stations with different hydrographic conditions during a 1-year cycle. The second-stage-matrix-based multivariate approach was used to summarize the internal interactions of the ciliate functional groups among five stations during a 1-year period. The functional groups of the ciliates represented a clear spatial variation in annual cycle among five stations. Mantel analysis demonstrated that the spatial variation in annual cycles of the ciliate functional groups were significantly correlated with the changes nutrients (mainly soluble reactive phosphates and nitrates), alone or in combination with salinity among five stations. Based the results, it is suggested that the spatial variation in annual cycles of functional groups of planktonic ciliates may indicated the changes of hydrographic conditions.

Bioindicator role of tintinnid (Protozoa: Ciliophora) for water quality monitoring in Kalpakkam, Tamil Nadu, south east coast of India

The feasibility of a potential bioindicator based on functional groups of microzooplankton tintinnids for bioassessments of water quality status was studied during southwest monsoon (June to September) along the coastal waters of Kalpakkam, India during 2012-2015. The work highlights the following features (1) tintinnid community composed of 28 species belonging to 11 genera and 9 families, revealed significant differences among the four study sites (2) maximum numerical abundance (2224±90ind. l^-1) and species diversity (H'=2.66) of tintinnid were recorded towards Bay of Bengal whereas minimum abundance (720±35ind. l^-1) and diversity (H'=1.74) were encountered in the backwater sites, (3) multivariate analyses [RELATE, Biota-environment (BIOENV) and canonical analysis of principal coordinates (CAP)] reveal that chl a, nitrate and phosphate were the potential causative factors for tintinnid distribution. Based on the results, we suggest that tintinnids may be used as a potential bioindicator of water quality status in marine ecosystem.

Anthropogenic disturbances influencing ciliate functional feeding groups in impacted tropical streams

Anthropogenic disturbances change the trophic structure of streams, ultimately affecting ecosystem functioning. We investigated the effects of human disturbances, mainly organic pollution, on ciliate functional feeding groups (FFG) in 10 tropical streams near agricultural and urban habitats, in the dry and rainy seasons. We hypothesised that the organic pollution would affect the ciliate composition and that the richness and abundance of ciliate FFG would be associated with different disturbances, such that an increase in the load of organic matter would result in an increase in the percentage of bacterivores ciliates, while streams with low organic matter concentration and wide canopy openness will determine a higher contribution of algivorous ciliates. Our results corroborate our hypothesis of an increased development of bacterivorous ciliates with increasing organic pollution, but only in the abundance of this FFG. Also, algivorous ciliates were found to be related to riparian vegetation clearing. Thus, ciliate FFG accurately reflected different anthropogenic disturbances, revealing a change in the trophic structure of the streams. In addition, we found that organic pollution can lead to both taxonomic and functional homogenization of the ciliate community, which implies serious consequences for ecosystem functioning.

Bioassessment of water quality status using a potential bioindicator based on functional groups of planktonic ciliates in marine ecosystems

The feasibility of a potential ecological indicator based on functional groups of planktonic ciliates for bioassessment of water quality status were studied in a bay, northern Yellow Sea. Samples were biweekly collected at five stations with different water quality status during a 1-year period. The multivariate approach based on "bootstrap-average" analysis was used to summarize the spatial variation in functional structure of the samples. The functional patterns represented a significant spatial variability, and were significantly correlated with the changes of nutrients (mainly nitrate nitrogen, NO3-N), alone or in combination with dissolve oxygen and salinity among five stations. The functional diversity represented a clear spatial variation among five stations, and was found to be significantly related to the nutrient NO3-N. According to the results, we suggest that the ecological parameter based on functional groups of planktonic ciliates may be used as a potential bioindicator of water quality status in marine ecosystems.

An approach to analyzing environmental drivers to spatial variations in annual distribution of periphytic protozoa in coastal ecosystems

The environmental drivers to the spatial variation in annual distribution were studied based on an annual dataset of periphytic protozoa using multivariate approaches. Samples were monthly collected at four stations within a pollution gradient in coastal waters of the Yellow Sea, northern China during a 1-year period. The second-stage (2STAGE) analyses showed that the internal patterns of the annual distribution were changed along the pollution gradient in terms of abundance. The dominant species represented different succession dynamics among four sampling stations during a 1-year cycle. Best matching analysis demonstrated that the spatial variations in annual distribution of the protozoa were significantly correlated with ammonium nitrogen (NH4-N), alone or in combination with salinity and dissolved oxygen (DO). Based on the results, we suggest that the nutrients, salinity and DO may be the main drivers to shape the spatial variations in annual distribution of periphytic protozoa.

Can tintinnids be used for discriminating water quality status in marine ecosystems?

Ciliated protozoa have many advantages in bioassessment of water quality. The ability of tintinnids for assessing water quality status was studied during a 7-yearcycle in Jiaozhou Bay of the Yellow Sea, northern China. The samples were collected monthly at four sites with a spatial gradient of environmental pollution. Environmental variables, e.g., temperature, salinity, chlorophyll a (Chl a), dissolved inorganic nitrogen, soluble reactive phosphate (SRP), and soluble active silicate (SRSi), were measured synchronously for comparison with biotic parameters. Results showed that: (1) tintinnid community structures represented significant differences among the four sampling sites; (2) spatial patterns of the tintinnid communities were significantly correlated with environmental variables, especially SRSi and nutrients; and (3) the community structural parameters and the five dominant species were significantly correlated with SRSi and nutrients. We suggested that tintinnids may be used as a potential bioindicator for discriminating water quality status in marine ecosystems.

Sampling frequency of ciliated protozoan microfauna for seasonal distribution research in marine ecosystems

Sampling frequency is important to obtain sufficient information for temporal research of microfauna. To determine an optimal strategy for exploring the seasonal variation in ciliated protozoa, a dataset from the Yellow Sea, northern China was studied. Samples were collected with 24 (biweekly), 12 (monthly), 8 (bimonthly per season) and 4 (seasonally) sampling events. Compared to the 24 samplings (100%), the 12-, 8- and 4-samplings recovered 94%, 94%, and 78% of the total species, respectively. To reveal the seasonal distribution, the 8-sampling regime may result in >75% information of the seasonal variance, while the traditional 4-sampling may only explain <65% of the total variance. With the increase of the sampling frequency, the biotic data showed stronger correlations with seasonal variables (e.g., temperature, salinity) in combination with nutrients. It is suggested that the 8-sampling events per year may be an optimal sampling strategy for ciliated protozoan seasonal research in marine ecosystems.

Insights into assessing environmental quality status using potential surrogates of biofilm-dwelling ciliate fauna in coastal waters

To determine potential surrogates of biofilm-dwelling ciliate fauna for assessing water quality, a dataset of coastal waters of the Yellow Sea was studied. Samples were collected monthly at a depth of 1 m from four sampling stations during a 1-year cycle (August 2011-July 2012), northern China. The ciliate communities at low taxonomic resolutions up to family level were significantly correlated with the full ciliate fauna at species-level resolution and represented a significant spatial variation in relation to the environmental changes. The presence/absence resolutions up to genus level maintained sufficient information of the ciliate species-abundance matrix. The vagile and sessile ciliate assemblages were significantly correlated with the full ciliate communities but only the latter maintained sufficient information with a significant spatial variation in response to the environmental stress. Correlation analyses showed that the taxon richness indices of potential surrogates at genus- and family-level resolutions can explain >95 % of the variance in that of the full species pool. Thus, it is suggested that the taxonomic resolutions up to family level may be a robust time-efficient surrogate of whole periphytic ciliate communities for assessing water quality status and would allow improving sampling strategies of large spatial scale monitoring programs, using biofilm-dwelling ciliates, in coastal waters.

A multivariate approach to the determination of an indicator species pool for community-based bioassessment of marine water quality

Previous studies in Chinese coastal waters of the Yellow Sea have shown that periphytic ciliates are reliable indicators of marine water quality. However, traditional community-based bioassessments are time-consuming because they rely on the identification and enumeration of all species within the community. In order to improve bioassessment efficiency, step-best-matching analysis was used to identify which are the most reliable indicator species among periphytic marine ciliate communities. Based on indices of species richness, diversity and evenness, a subset of 48 species (out of a total of 141) was found to retain sufficient information for accurately predicting water quality, and was more strongly related to changes of environmental variables than the full species set. These results demonstrate that the step-best-matching analysis is a powerful approach for identifying an indicator species pool from a full species dataset of a community, and allows the development of time-efficient sampling protocols for community-based marine bioassessment.

Do early colonization patterns of periphytic ciliate fauna reveal environmental quality status in coastal waters?

The feasibility for developing a protocol to assess marine water quality based on early colonization features of periphytic ciliate fauna was studied in coastal waters of the Yellow Sea, northern China. The ciliate communities with 3-28-day ages were collected monthly at four stations with a spatial gradient of environmental stress from August 2011 to July 2012. The spatial patterns of both early (3-7 days) and mature (>10 days) communities of the ciliates represented significant differences among the four stations, and were significantly correlated with environmental variables, especially nutrients and chemical oxygen demand (COD). Seven and eight dominant species were significantly correlated with nutrients or COD within the early and mature communities, respectively. The species richness indices were strongly correlated with nutrients, especially in mature communities. These findings suggest that it is possible to assess the status of water quality using early colonization features of periphytic ciliate fauna in coastal waters.

Use of biofilm-dwelling ciliate communities to determine environmental quality status of coastal waters

It has increasingly been recognized that the ecological features of protozoan communities have many advantages as a favorable bioindicator to evaluate environmental stress and anthropogenic impact in many aquatic ecosystems. The ability of biofilm-dwelling ciliate communities for assessing environmental quality status was studied, using glass slides as an artificial substratum, during a 1-year cycle (August 2011-July 2012) in coastal waters of the Yellow Sea, northern China. The samples were collected monthly at a depth of 1m from four sampling stations with a spatial gradient of environmental stress. Environmental variables, e.g., salinity, dissolved oxygen (DO), chemical oxygen demand (COD), nitrate nitrogen (NO3-N), ammonium nitrogen (NH4-N) and soluble reactive phosphates (SRP), were measured synchronously for comparison with biotic parameters. Results showed that: (1) the community structures of the ciliates represented significant differences among the four sampling stations; (2) spatial patterns of the ciliate communities were significantly correlated with environmental variables, especially COD and the nutrients; (3) five dominant species (Hartmannula angustipilosa, Metaurostylopsis sp.1, Discocephalus ehrenbergi, Stephanopogon minuta and Pseudovorticella paracratera) were significantly correlated with nutrients or COD; and (4) the species richness measure was significantly correlated with the nutrient NO3-N. It is suggested that biofilm-dwelling ciliate communities might be used as a potentially robust bioindicator for discriminating environmental quality status in coastal waters.

Insights into discriminating environmental quality status using taxonomic distinctness based on a small species pool of ciliated protozoa in marine ecosystems

The objective of this study was to determine the feasibility of developing a protocol for assessing marine water quality based on taxonomic relatedness within a small pool of planktonic ciliates. An annual dataset was compiled based on samples collected biweekly at five sites, with a gradient of environmental stress, during a 1-year cycle in Jiaozhou Bay, northern China. A total of 60 species, belonging to 17 genera 10 families, 5 orders and 2 classes of the phylum Ciliophora, were identified. Among five orders, Tintinnida showed a low variability mainly at species level whereas the other orders (especially Strombidiida and Choreotrichida, although with the exception of the genus Strombidium) represented a high variability at higher taxonomic ranks (e.g. family or order). Mantel analyses showed that spatial patterns of the ciliate assemblages, with tinitinnids and Strombidium spp. excluded, were significantly correlated with those of the total planktonic ciliate communities in terms of their response to environmental status. The average taxonomic distinctness (Δ(+)) based on the small species pool was significantly negatively correlated with the changes in concentrations of nutrients (P<0.05). Furthermore, the paired indices of Δ(+) and the variation in taxonomic distinctness (Λ(+)) showed a clear departure from the expected taxonomic pattern. These findings suggest that it is possible to assess the status of marine water quality using the taxonomic relatedness within a small pool of planktonic ciliates.