1
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Yamada H. Spatial sorting caused by downstream dispersal: implication for morphological evolution in isolated populations of fat minnow inhabiting small streams flowing through terraced rice paddies. J Evol Biol 2024; 37:1194-1204. [PMID: 39233607 DOI: 10.1093/jeb/voae105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 07/23/2024] [Accepted: 09/04/2024] [Indexed: 09/06/2024]
Abstract
The evolutionary forces arising from differential dispersal are known as "spatial sorting," distinguishing them from natural selection arising from differential survival or differential reproductive success. Spatial sorting is often considered to be transient because it is offset by the return of dispersers in many cases. However, in riverine systems, spatial sorting by downstream dispersal can be cumulative in habitats upstream of migration barriers such as weirs or falls, which can block the return of the dispersers. Terraced rice paddies are often found on steep mountain slopes in Japan and often incorporate small streams with numerous migration barriers. This study investigated the morphological features of fat minnow, Rhynchocypris oxycephalus jouyi (Cyprinidae), inhabiting above-barrier habitats of the small streams flowing through flood-prone terraced rice paddies and examined their function via a mark-recapture experiment. Although this study did not reveal a consistent pattern across all local populations, some above-barrier populations were characterized by individuals with a thinner caudal peduncle, thinner body, and longer ventral caudal fin lobes than those in neighbouring mainstream populations. A mark-recapture experiment during minor flooding showed that a thinner caudal peduncle and deeper body helped fat minnow avoid downstream dispersal and ascend a small step, and suggested that a longer ventral caudal fin lobe was important for ascending. These results suggest that the caudal morphologies of some above-barrier populations avoid or reduce the risk of downstream dispersal, supporting the idea that spatial sorting shapes functional traits, enhancing the spatial persistence of individuals in upstream habitats.
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Affiliation(s)
- Hiroyuki Yamada
- Graduate School of Science and Engineering, Ehime University, Matsuyama, Ehime, Japan
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2
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Hagen O, Viana DS, Wiegand T, Chase JM, Onstein RE. The macro-eco-evolutionary interplay between dispersal, competition and landscape structure in generating biodiversity. Philos Trans R Soc Lond B Biol Sci 2024; 379:20230140. [PMID: 38913052 PMCID: PMC11391298 DOI: 10.1098/rstb.2023.0140] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 03/04/2024] [Accepted: 03/07/2024] [Indexed: 06/25/2024] Open
Abstract
Theory links dispersal and diversity, predicting the highest diversity at intermediate dispersal levels. However, the modulation of this relationship by macro-eco-evolutionary mechanisms and competition within a landscape is still elusive. We examine the interplay between dispersal, competition and landscape structure in shaping biodiversity over 5 million years in a dynamic archipelago landscape. We model allopatric speciation, temperature niche, dispersal, competition, trait evolution and trade-offs between competitive and dispersal traits. Depending on dispersal abilities and their interaction with landscape structure, our archipelago exhibits two 'connectivity regimes', that foster speciation events among the same group of islands. Peaks of diversity (i.e. alpha, gamma and phylogenetic), occurred at intermediate dispersal; while competition shifted diversity peaks towards higher dispersal values for each connectivity regime. This shift demonstrates how competition can boost allopatric speciation events through the evolution of thermal specialists, ultimately limiting geographical ranges. Even in a simple landscape, multiple intermediate dispersal diversity relationships emerged, all shaped similarly and according to dispersal and competition strength. Our findings remain valid as dispersal- and competitive-related traits evolve and trade-off; potentially leaving identifiable biodiversity signatures, particularly when trade-offs are imposed. Overall, we scrutinize the convoluted relationships between dispersal, species interactions and landscape structure on macro-eco-evolutionary processes, with lasting imprints on biodiversity.This article is part of the theme issue 'Diversity-dependence of dispersal: interspecific interactions determine spatial dynamics'.
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Affiliation(s)
- O Hagen
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Department of Ecological Modelling, UFZ - Helmholtz Centre for Environmental Research, Leipzig, Germany
| | - D S Viana
- Estación Biológica de Doñana, CSIC, Seville, Spain
| | - T Wiegand
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Department of Ecological Modelling, UFZ - Helmholtz Centre for Environmental Research, Leipzig, Germany
| | - J M Chase
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
| | - R E Onstein
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany
- Naturalis Biodiversity Center, Leiden 2333 CR, Netherlands
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3
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Hagan T, Ding G, Buchmann G, Oldroyd BP, Gloag R. Serial founder effects slow range expansion in an invasive social insect. Nat Commun 2024; 15:3608. [PMID: 38684711 PMCID: PMC11058855 DOI: 10.1038/s41467-024-47894-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Accepted: 04/10/2024] [Indexed: 05/02/2024] Open
Abstract
Invasive populations often experience founder effects: a loss of genetic diversity relative to the source population, due to a small number of founders. Even where these founder effects do not impact colonization success, theory predicts they might affect the rate at which invasive populations expand. This is because secondary founder effects are generated at advancing population edges, further reducing local genetic diversity and elevating genetic load. We show that in an expanding invasive population of the Asian honey bee (Apis cerana), genetic diversity is indeed lowest at range edges, including at the complementary sex determiner, csd, a locus that is homozygous-lethal. Consistent with lower local csd diversity, range edge colonies had lower brood viability than colonies in the range centre. Further, simulations of a newly-founded and expanding honey bee population corroborate the spatial patterns in mean colony fitness observed in our empirical data and show that such genetic load at range edges will slow the rate of population expansion.
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Affiliation(s)
- Thomas Hagan
- Behaviour, Ecology and Evolution Lab, School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia.
| | - Guiling Ding
- Behaviour, Ecology and Evolution Lab, School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia
- Key Laboratory of Pollinating Insect Biology of the Ministry of Agriculture and Rural Affairs, Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing, 100093, China
| | - Gabriele Buchmann
- Behaviour, Ecology and Evolution Lab, School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia
| | - Benjamin P Oldroyd
- Behaviour, Ecology and Evolution Lab, School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia
| | - Rosalyn Gloag
- Behaviour, Ecology and Evolution Lab, School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, 2006, Australia.
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4
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Hall R, Bandara A, Charlebois DA. Fitness effects of a demography-dispersal trade-off in expanding Saccharomyces cerevisiaemats. Phys Biol 2024; 21:026001. [PMID: 38194907 DOI: 10.1088/1478-3975/ad1ccd] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Accepted: 01/09/2024] [Indexed: 01/11/2024]
Abstract
Fungi expand in space and time to form complex multicellular communities. The mechanisms by which they do so can vary dramatically and determine the life-history and dispersal traits of expanding populations. These traits influence deterministic and stochastic components of evolution, resulting in complex eco-evolutionary dynamics during colony expansion. We perform experiments on budding yeast strains genetically engineered to display rough-surface and smooth-surface phenotypes in colony-like structures called 'mats'. Previously, it was shown that the rough-surface strain has a competitive advantage over the smooth-surface strain when grown on semi-solid media. We experimentally observe the emergence and expansion of segments with a distinct smooth-surface phenotype during rough-surface mat development. We propose a trade-off between dispersal and local carrying capacity to explain the relative fitness of these two phenotypes. Using a modified stepping-stone model, we demonstrate that this trade-off gives the high-dispersing, rough-surface phenotype a competitive advantage from standing variation, but that it inhibits this phenotype's ability to invade a resident smooth-surface population via mutation. However, the trade-off improves the ability of the smooth-surface phenotype to invade in rough-surface mats, replicating the frequent emergence of smooth-surface segments in experiments. Together, these computational and experimental findings advance our understanding of the complex eco-evolutionary dynamics of fungal mat expansion.
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Affiliation(s)
- Rebekah Hall
- Department of Mathematical and Statistical Sciences, University of Alberta, 11455 Saskatchewan Drive NW, Edmonton, Alberta, Canada
| | - Akila Bandara
- Department of Physics, University of Alberta, 11455 Saskatchewan Drive NW, Edmonton, Alberta, Canada
| | - Daniel A Charlebois
- Department of Physics, University of Alberta, 11455 Saskatchewan Drive NW, Edmonton, Alberta, Canada
- Department of Biological Sciences, University of Alberta, 11455 Saskatchewan Drive NW, Edmonton, Alberta, Canada
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5
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Romeo C, Filipe J, Wauters LA, Comazzi S, Riva F, Ferrari N. Shifts in immune responses of an invasive alien species: A test of the evolution of increased competitive ability hypothesis using American Eastern gray squirrels in Italy. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 900:165747. [PMID: 37495139 DOI: 10.1016/j.scitotenv.2023.165747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 07/03/2023] [Accepted: 07/21/2023] [Indexed: 07/28/2023]
Abstract
Based on the Evolution of Increased Competitive Ability (EICA) hypothesis, a reduced investment in immunity, consequent to parasite loss, could partly explain the success of invasive alien species. We investigated variation in parasite load and immune responses of alien Eastern gray squirrels (Sciurus carolinensis) along the invasion wave of an expanding population. We first verified by fecal analyses that 1) parasite abundance decreased moving from the core towards the invasion front. Next, we used multiple measures of immunity to investigate whether, in response to the lower parasite pressure, individuals at the invasion front 2) dampened their costly inflammatory response, and 3) increased their investment in less expensive acquired immunity. We first explored variation in hematological variables related either to the inflammatory or the acquired response. On a subset of individuals, we carried out ex vivo cell cultures to analyse the basal expression of MHC class II genes and the expression of TNF-α genes in response to an immune challenge. Platelet counts and TNF-α expression suggested higher inflammation in individuals living at the invasion core, whereas parameters associated with an acquired response (lymphocyte counts and MHC II expression by spleen cells), conversely, were higher in squirrels at the front. Overall, our results suggest a shift between different immune strategies along the invasion wave, supporting a reduced investment in costly inflammatory responses and an increased investment in acquired immunity in individuals at the expanding edge of the range, which are subjected to high selective pressures for dispersal and reproduction.
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Affiliation(s)
- Claudia Romeo
- Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna, Via Bianchi 9, 25124 Brescia, Italy.
| | - Joel Filipe
- Università degli Studi di Milano, Department of Veterinary Medicine and Animal Science, Via dell'Università 6, 26900 Lodi, Italy
| | - Lucas A Wauters
- Università degli Studi dell'Insubria, Department of Theoretical and Applied Sciences, Environment Analysis and Management Unit - Guido Tosi Research Group, Via Dunant 3, 21100 Varese, Italy; University of Antwerp, Department of Biology - Evolutionary Ecology Group, Universiteitsplein 1, 2610 Wilrijk, Belgium
| | - Stefano Comazzi
- Università degli Studi di Milano, Department of Veterinary Medicine and Animal Science, Via dell'Università 6, 26900 Lodi, Italy; Università degli Studi di Milano, WildlifeHealth Lab, Via dell'Università 6, 26900 Lodi, Italy
| | - Federica Riva
- Università degli Studi di Milano, Department of Veterinary Medicine and Animal Science, Via dell'Università 6, 26900 Lodi, Italy
| | - Nicola Ferrari
- Università degli Studi di Milano, Department of Veterinary Medicine and Animal Science, Via dell'Università 6, 26900 Lodi, Italy; Università degli Studi di Milano, WildlifeHealth Lab, Via dell'Università 6, 26900 Lodi, Italy
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6
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Comerford MS, La TM, Carroll S, Egan SP. Spatial sorting promotes rapid (mal)adaptation in the red-shouldered soapberry bug after hurricane-driven local extinctions. Nat Ecol Evol 2023; 7:1856-1868. [PMID: 37813943 DOI: 10.1038/s41559-023-02205-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2021] [Accepted: 08/24/2023] [Indexed: 10/11/2023]
Abstract
Predicting future evolutionary change is a critical challenge in the Anthropocene as geographic range shifts and local extinction emerge as hallmarks of planetary change. Hence, spatial sorting-a driver of rapid evolution in which dispersal-associated traits accumulate along expanding range edges and within recolonized habitats-might be of growing importance in ecology and conservation. We report on the results of a natural experiment that monitored recolonization of host plants by the seed-feeding, red-shouldered soapberry bug, Jadera haematoloma, after local extinctions from catastrophic flooding in an extreme hurricane. We tested the contribution of spatial sorting to generate rapid and persistent evolution in dispersal traits, as well as in feeding traits unrelated to dispersal. Long-winged dispersal forms accumulated in recolonized habitats and due to genetic correlation, mouthparts also became longer and this shift persisted across generations. Those longer mouthparts were probably adaptive on one host plant species but maladaptive on two others based on matching the optimum depth of seeds within their host fruits. Moreover, spatial sorting eroded recently evolved adaptive divergence in mouthpart length among all host-associated biotypes, an outcome pointing to profound practical consequences of the extreme weather event for local adaptation, population resilience and evolutionary futures.
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Affiliation(s)
| | - Tatum M La
- Department of BioSciences, Rice University, Houston, TX, USA
- Clements High School, Sugar Land, TX, USA
| | - Scott Carroll
- Department of Entomology & Nematology, University of California, Davis, CA, USA
| | - Scott P Egan
- Department of BioSciences, Rice University, Houston, TX, USA
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7
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Bisconti R, Carere C, Costantini D, Liparoto A, Chiocchio A, Canestrelli D. Evolution of personality and locomotory performance traits during a late Pleistocene island colonization in a tree frog. Curr Zool 2023; 69:631-641. [PMID: 37637312 PMCID: PMC10449429 DOI: 10.1093/cz/zoac062] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 08/02/2022] [Indexed: 08/29/2023] Open
Abstract
Recent empirical and theoretical studies suggest that personality and locomotory performance traits linked to dispersal abilities are crucial components of the dispersal syndromes, and that they can evolve during range expansions and colonization processes. Island colonization is one of the best characterized processes in dispersal biogeography, and its implication in the evolution of phenotypic traits has been investigated over a wide range of temporal scales. However, the effect of island colonization on personality and performance traits of natural populations, and how these traits could drive island colonization, has been little explored. Noteworthy, no studies have addressed these processes in the context of late Pleistocene range expansions. Here, we investigated the contribution of island colonization triggered by postglacial range expansions to intraspecific variation in personality and locomotory performance traits. We compared boldness, exploration, jumping performance, and stickiness abilities in populations from 3 equidistant areas of the Tyrrhenian tree frog Hyla sarda, 2 from the main island (Corsica Island), and 1 from the recently colonized island of Elba. Individuals from Elba were significantly bolder than individuals from Corsica, as they emerged sooner from a shelter (P = 0.028), while individuals from Corsica showed markedly higher jumping and stickiness performance (both P < 0.001), resulting as more performing than those of Elba. We discuss these results in the context of the major microevolutionary processes at play during range expansion, including selection, spatial sorting, founder effects, and their possible interaction with local adaptation processes.
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Affiliation(s)
- Roberta Bisconti
- Department of Ecological and Biological Science, Tuscia University, Largo dell’Università s.n.c., 01100 Viterbo, Italy
| | - Claudio Carere
- Department of Ecological and Biological Science, Tuscia University, Largo dell’Università s.n.c., 01100 Viterbo, Italy
| | - David Costantini
- Unité Physiologie Moléculaire et Adaptation (PhyMA), Muséum National d’Histoire Naturelle, CNRS, CP32, 57 rue Cuvier 75005 Paris, France
| | - Anita Liparoto
- Department of Ecological and Biological Science, Tuscia University, Largo dell’Università s.n.c., 01100 Viterbo, Italy
| | - Andrea Chiocchio
- Department of Ecological and Biological Science, Tuscia University, Largo dell’Università s.n.c., 01100 Viterbo, Italy
| | - Daniele Canestrelli
- Department of Ecological and Biological Science, Tuscia University, Largo dell’Università s.n.c., 01100 Viterbo, Italy
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8
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Daly EZ, Chabrerie O, Massol F, Facon B, Hess MC, Tasiemski A, Grandjean F, Chauvat M, Viard F, Forey E, Folcher L, Buisson E, Boivin T, Baltora‐Rosset S, Ulmer R, Gibert P, Thiébaut G, Pantel JH, Heger T, Richardson DM, Renault D. A synthesis of biological invasion hypotheses associated with the introduction–naturalisation–invasion continuum. OIKOS 2023. [DOI: 10.1111/oik.09645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Ella Z. Daly
- Univ. of Rennes, CNRS, ECOBIO (Ecosystèmes, Biodiversité, Evolution), UMR 6553 Rennes France
| | - Olivier Chabrerie
- Univ. de Picardie Jules Verne, UMR 7058 CNRS EDYSAN Amiens Cedex 1 France
| | - Francois Massol
- Univ. Lille, CNRS, Inserm, CHU Lille, Inst. Pasteur de Lille, U1019 – UMR 9017 – CIIL – Center for Infection and Immunity of Lille Lille France
| | - Benoit Facon
- CBGP, INRAE, CIRAD, IRD, Montpellier Institut Agro, Univ. Montpellier Montpellier France
| | - Manon C.M. Hess
- Inst. Méditerranéen de Biodiversité et d'Ecologie Marine et Continentale (IMBE), UMR: Aix Marseille Univ., Avignon Université, CNRS, IRD France
- Inst. de Recherche pour la Conservation des zones Humides Méditerranéennes Tour du Valat, Le Sambuc Arles France
| | - Aurélie Tasiemski
- Univ. Lille, CNRS, Inserm, CHU Lille, Inst. Pasteur de Lille, U1019 – UMR 9017 – CIIL – Center for Infection and Immunity of Lille Lille France
| | - Frédéric Grandjean
- Univ. de Poitiers, UMR CNRS 7267 EBI‐Ecologie et Biologie des Interactions, équipe EES Poitiers Cedex 09 France
| | | | | | - Estelle Forey
- Normandie Univ., UNIROUEN, INRAE, USC ECODIV Rouen France
| | - Laurent Folcher
- ANSES – Agence Nationale de Sécurité Sanitaire de l'Alimentation, de l'Environnement et du Travail, Laboratoire de la Santé des Végétaux – Unité de Nématologie Le Rheu France
| | - Elise Buisson
- Inst. Méditerranéen de Biodiversité et d'Ecologie Marine et Continentale (IMBE), UMR: Aix Marseille Univ., Avignon Université, CNRS, IRD France
| | - Thomas Boivin
- INRAE, UR629 Écologie des Forêts Méditerranéennes, Centre de Recherche Provence‐Alpes‐Côte d'Azur Avignon France
| | | | - Romain Ulmer
- Univ. de Picardie Jules Verne, UMR 7058 CNRS EDYSAN Amiens Cedex 1 France
| | - Patricia Gibert
- UMR 5558 CNRS – Univ. Claude Bernard Lyon 1, Biométrie et Biologie Evolutive, Bât. Gregor Mendel Villeurbanne Cedex France
| | - Gabrielle Thiébaut
- Univ. of Rennes, CNRS, ECOBIO (Ecosystèmes, Biodiversité, Evolution), UMR 6553 Rennes France
| | - Jelena H. Pantel
- Ecological Modelling, Faculty of Biology, Univ. of Duisburg‐Essen Essen Germany
| | - Tina Heger
- Leibniz Inst. of Freshwater Ecology and Inland Fisheries (IGB) Berlin Germany
- Technical Univ. of Munich, Restoration Ecology Freising Germany
| | - David M. Richardson
- Centre for Invasion Biology, Dept. Botany & Zoology, Stellenbosch University Stellenbosch South Africa
- Inst. of Botany, Czech Academy of Sciences Průhonice Czech Republic
| | - David Renault
- Univ. of Rennes, CNRS, ECOBIO (Ecosystèmes, Biodiversité, Evolution), UMR 6553 Rennes France
- Inst. Universitaire de France Paris Cedex 05 France
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9
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Acevedo MA, Fankhauser C, Papa R. Recolonization of secondary forests by locally extinct fauna through the lens of range expansion: Four open questions. Biotropica 2022. [DOI: 10.1111/btp.13178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Affiliation(s)
- Miguel A. Acevedo
- Department of Wildlife Ecology and Conservation University of Florida Gainesville Florida USA
| | - Carly Fankhauser
- Department of Wildlife Ecology and Conservation University of Florida Gainesville Florida USA
| | - Riccardo Papa
- Department of Biology University of Puerto Rico San Juan Puerto Rico
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10
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Wei T, Lai W, Chen Q, Zhang Y, Sun C, He X, Zhao G, Fu X, Liu C. Exploiting spatial dimensions to enable parallelized continuous directed evolution. Mol Syst Biol 2022; 18:e10934. [PMID: 36129229 PMCID: PMC9491160 DOI: 10.15252/msb.202210934] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 09/02/2022] [Accepted: 09/05/2022] [Indexed: 12/03/2022] Open
Abstract
Current strategies to improve the throughput of continuous directed evolution technologies often involve complex mechanical fluid-controlling system or robotic platforms, which limits their popularization and application in general laboratories. Inspired by our previous study on bacterial range expansion, in this study, we report a system termed SPACE for rapid and extensively parallelizable evolution of biomolecules by introducing spatial dimensions into the landmark phage-assisted continuous evolution system. Specifically, M13 phages and chemotactic Escherichia coli cells were closely inoculated onto a semisolid agar. The phages came into contact with the expanding front of the bacterial range, and then comigrated with the bacteria. This system leverages competition over space, wherein evolutionary progress is closely associated with the production of spatial patterns, allowing the emergence of improved or new protein functions. In a prototypical problem, SPACE remarkably simplified the process and evolved the promoter recognition of T7 RNA polymerase (RNAP) to a library of 96 random sequences in parallel. These results establish SPACE as a simple, easy to implement, and massively parallelizable platform for continuous directed evolution in general laboratories.
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Affiliation(s)
- Ting Wei
- CAS Key Laboratory for Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhenChina
| | - Wangsheng Lai
- CAS Key Laboratory for Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhenChina
| | - Qian Chen
- CAS Key Laboratory for Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhenChina
- University of Chinese Academy of SciencesBeijingChina
| | - Yi Zhang
- CAS Key Laboratory for Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhenChina
| | - Chenjian Sun
- CAS Key Laboratory for Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhenChina
- University of Chinese Academy of SciencesBeijingChina
| | - Xionglei He
- State Key Laboratory of Biocontrol, School of Life SciencesSun Yat‐Sen UniversityGuangzhouChina
| | - Guoping Zhao
- CAS Key Laboratory for Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhenChina
- CAS Key Laboratory for Synthetic Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological SciencesChinese Academy of SciencesShanghaiChina
| | - Xiongfei Fu
- CAS Key Laboratory for Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhenChina
- University of Chinese Academy of SciencesBeijingChina
| | - Chenli Liu
- CAS Key Laboratory for Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhenChina
- University of Chinese Academy of SciencesBeijingChina
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11
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Holt RD, Barfield M, Peniston JH. Temporal variation may have diverse impacts on range limits. Philos Trans R Soc Lond B Biol Sci 2022; 377:20210016. [PMID: 35184591 PMCID: PMC8861856 DOI: 10.1098/rstb.2021.0016] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2021] [Accepted: 01/24/2022] [Indexed: 01/16/2023] Open
Abstract
Environmental fluctuations are pervasive in nature, but the influence of non-directional temporal variation on range limits has received scant attention. We synthesize insights from the literature and use simple models to make conceptual points about the potentially wide range of ecological and evolutionary effects of temporal variation on range limits. Because organisms respond nonlinearly to environmental conditions, temporal variation can directionally alter long-term growth rates, either to shrink or to expand ranges. We illustrate this diversity of outcomes with a model of competition along a mortality gradient. Temporal variation can permit transitions between alternative states, potentially facilitating range expansion. We show this for variation in dispersal, using simple source-sink population models (with strong Allee effects, or with gene flow hampering local adaptation). Temporal variation enhances extinction risk owing to demographic stochasticity, rare events, and loss of genetic variation, all tending to shrink ranges. However, specific adaptations to exploit variation (including dispersal) may permit larger ranges than in similar but constant environments. Grappling with temporal variation is essential both to understand eco-evolutionary dynamics at range limits and to guide conservation and management strategies. This article is part of the theme issue 'Species' ranges in the face of changing environments (Part II)'.
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Affiliation(s)
- Robert D. Holt
- Department of Biology, The University of Florida, Gainesville, FL 32611, USA
| | - Michael Barfield
- Department of Biology, The University of Florida, Gainesville, FL 32611, USA
| | - James H. Peniston
- Department of Biology, The University of Florida, Gainesville, FL 32611, USA
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12
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Jarrett BJM, Szűcs M. Traits across trophic levels interact to influence parasitoid establishment in biological control releases. Ecol Evol 2022; 12:e8654. [PMID: 35342595 PMCID: PMC8928891 DOI: 10.1002/ece3.8654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 01/17/2022] [Accepted: 02/06/2022] [Indexed: 11/06/2022] Open
Abstract
A central goal in ecology is to predict what governs a species' ability to establish in a new environment. One mechanism driving establishment success is individual species' traits, but the role of trait combinations among interacting species across different trophic levels is less clear. Deliberate or accidental species additions to existing communities provide opportunities to study larger scale patterns of establishment success. Biological control introductions are especially valuable because they contain data on both the successfully established and unestablished species. Here, we used a recent dataset of importation biological control introductions to explore how life-history traits of 132 parasitoid species and their herbivorous hosts interact to affect parasitoid establishment. We find that of five parasitoid and herbivore traits investigated, one parasitoid trait-host range-weakly predicts parasitoid establishment; parasitoids with higher levels of phylogenetic specialization have higher establishment success, though the effect is marginal. In addition, parasitoids are more likely to establish when their herbivore host has had a shorter residence time. Interestingly, we do not corroborate earlier findings that gregarious parasitoids and endoparasitoids are more likely to establish. Most importantly, we find that life-history traits of the parasitoid species and their hosts can interact to influence establishment. Specifically, parasitoids with broader host ranges are more likely to establish when the herbivore they have been released to control is also more of a generalist. These results provide insight into how multiple species' traits and their interactions, both within and across trophic levels, can influence establishment of species of higher trophic levels.
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Affiliation(s)
- Benjamin J. M. Jarrett
- Department of EntomologyMichigan State UniversityEast LansingMichiganUSA
- Department of BiologyLund UniversityLundSweden
| | - Marianna Szűcs
- Department of EntomologyMichigan State UniversityEast LansingMichiganUSA
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13
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Eyck HJF, Brown GP, Rollins LA, Shine R. In an arms race between host and parasite, a lungworm's ability to infect a toad is determined by host susceptibility not parasite preference. Biol Lett 2022; 18:20210552. [PMID: 35259944 PMCID: PMC8905180 DOI: 10.1098/rsbl.2021.0552] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Evolutionary arms races can alter both parasite infectivity and host resistance, and it is difficult to separate the effects of these twin determinants of infection outcomes. We used a co-introduced, invasive host-parasite system (the lungworm Rhabdias pseudosphaerocephala and cane toads Rhinella marina), where rapid adaptation and dispersal have led to population differences in infection resistance. We quantified behavioural responses of parasite larvae to skin-chemical cues of toads from different invasive populations, and rates at which juvenile hosts became infected following standardized exposure to lungworms. Chemical cues from toad skin altered host-seeking behaviour by parasites, similarly among populations. The number of infection attempts (parasite larvae entering the host's body) also did not differ between populations, but rates of successful infection (establishment of adult worm in host lungs) were higher for range-edge toads than for range-core conspecifics. Thus, lower resistance to parasite infection in range-edge juvenile toads appears to be due to less effective immune defences of the host rather than differential behavioural responses of the parasite. In this ongoing host-parasite arms race, changing outcomes appear to be driven by shifts in host immunocompetence.
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Affiliation(s)
- Harrison J F Eyck
- School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney 2052, Australia
| | - Gregory P Brown
- Department of Biological Sciences, Macquarie University, New South Wales, Australia
| | - Lee A Rollins
- School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney 2052, Australia
| | - Richard Shine
- Department of Biological Sciences, Macquarie University, New South Wales, Australia
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14
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Cao LJ, Song W, Chen JC, Fan XL, Hoffmann AA, Wei SJ. Population genomic signatures of the oriental fruit moth related to the Pleistocene climates. Commun Biol 2022; 5:142. [PMID: 35177826 PMCID: PMC8854661 DOI: 10.1038/s42003-022-03097-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Accepted: 01/31/2022] [Indexed: 12/31/2022] Open
Abstract
The Quaternary climatic oscillations are expected to have had strong impacts on the evolution of species. Although legacies of the Quaternary climates on population processes have been widely identified in diverse groups of species, adaptive genetic changes shaped during the Quaternary have been harder to decipher. Here, we assembled a chromosome-level genome of the oriental fruit moth and compared genomic variation among refugial and colonized populations of this species that diverged in the Pleistocene. High genomic diversity was maintained in refugial populations. Demographic analysis showed that the effective population size of refugial populations declined during the penultimate glacial maximum (PGM) but remained stable during the last glacial maximum (LGM), indicating a strong impact of the PGM rather than the LGM on this pest species. Genome scans identified one chromosomal inversion and a mutation of the circadian gene Clk on the neo-Z chromosome potentially related to the endemicity of a refugial population. In the colonized populations, genes in pathways of energy metabolism and wing development showed signatures of selection. These different genomic signatures of refugial and colonized populations point to multiple impacts of Quaternary climates on adaptation in an extant species.
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Affiliation(s)
- Li-Jun Cao
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, 9 Shuguanghuayuan Middle Road, Haidian District, Beijing, 100097, China
| | - Wei Song
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, 9 Shuguanghuayuan Middle Road, Haidian District, Beijing, 100097, China
- Beijing Key Laboratory for Forest Pests Control, Beijing Forestry University, Beijing, 100083, China
| | - Jin-Cui Chen
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, 9 Shuguanghuayuan Middle Road, Haidian District, Beijing, 100097, China
| | - Xu-Lei Fan
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, 9 Shuguanghuayuan Middle Road, Haidian District, Beijing, 100097, China
| | - Ary Anthony Hoffmann
- School of BioSciences, Bio21 Institute, University of Melbourne, Parkville, VIC, Australia
| | - Shu-Jun Wei
- Institute of Plant Protection, Beijing Academy of Agriculture and Forestry Sciences, 9 Shuguanghuayuan Middle Road, Haidian District, Beijing, 100097, China.
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15
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Comerford M, Egan SP. The potential role of spatial sorting in speciation and adaptive radiations. POPUL ECOL 2022. [DOI: 10.1002/1438-390x.12108] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
| | - Scott P. Egan
- Department of BioSciences Rice University Houston Texas USA
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16
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Burgess SC, Bode M, Leis JM, Mason LB. Individual variation in marine larval‐fish swimming speed and the emergence of dispersal kernels. OIKOS 2021. [DOI: 10.1111/oik.08896] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Scott C. Burgess
- Dept of Biological Science, Florida State Univ. Tallahassee FL USA
| | - Michael Bode
- School of Mathematical Sciences, Queensland Univ. of Technology Brisbane Australia
| | - Jeffrey M. Leis
- School of Mathematical Sciences, Queensland Univ. of Technology Brisbane Australia
| | - Luciano B. Mason
- Australian Museum Research Inst. Sydney Australia
- The Inst. for Marine and Antarctic Studies, Univ. of Tasmania Hobart Australia
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17
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Shine R, Alford RA, Blennerhasset R, Brown GP, DeVore JL, Ducatez S, Finnerty P, Greenlees M, Kaiser SW, McCann S, Pettit L, Pizzatto L, Schwarzkopf L, Ward-Fear G, Phillips BL. Increased rates of dispersal of free-ranging cane toads (Rhinella marina) during their global invasion. Sci Rep 2021; 11:23574. [PMID: 34876612 PMCID: PMC8651681 DOI: 10.1038/s41598-021-02828-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Accepted: 11/15/2021] [Indexed: 02/08/2023] Open
Abstract
Invasions often accelerate through time, as dispersal-enhancing traits accumulate at the expanding range edge. How does the dispersal behaviour of individual organisms shift to increase rates of population spread? We collate data from 44 radio-tracking studies (in total, of 650 animals) of cane toads (Rhinella marina) to quantify distances moved per day, and the frequency of displacement in their native range (French Guiana) and two invaded areas (Hawai’i and Australia). We show that toads in their native-range, Hawai’i and eastern Australia are relatively sedentary, while toads dispersing across tropical Australia increased their daily distances travelled from 20 to 200 m per day. That increase reflects an increasing propensity to change diurnal retreat sites every day, as well as to move further during each nocturnal displacement. Daily changes in retreat site evolved earlier than did changes in distances moved per night, indicating a breakdown in philopatry before other movement behaviours were optimised to maximise dispersal.
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Affiliation(s)
- Richard Shine
- Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia.
| | - Ross A Alford
- College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | | | - Gregory P Brown
- Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia
| | - Jayna L DeVore
- School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, 2006, Australia
| | - Simon Ducatez
- UMR 241 EIO (UPF, IRD, IFREMER, ILM), Institut de Recherche Pour le Développement (IRD), Papeete, Tahiti, French Polynesia
| | - Patrick Finnerty
- School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, 2006, Australia
| | - Matthew Greenlees
- Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia
| | - Shannon W Kaiser
- Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia
| | - Samantha McCann
- School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, 2006, Australia
| | - Lachlan Pettit
- School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, 2006, Australia
| | - Ligia Pizzatto
- School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, 2006, Australia.,School of Environmental and Life Sciences, University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Lin Schwarzkopf
- College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia
| | - Georgia Ward-Fear
- Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia
| | - Benjamin L Phillips
- School of BioSciences, University of Melbourne, Parkville, VIC, 3010, Australia
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18
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Mohanty NP, Wagener C, Herrel A, Thaker M. The ecology of sleep in non-avian reptiles. Biol Rev Camb Philos Soc 2021; 97:505-526. [PMID: 34708504 DOI: 10.1111/brv.12808] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2021] [Revised: 10/10/2021] [Accepted: 10/18/2021] [Indexed: 01/10/2023]
Abstract
Sleep is ubiquitous in the animal kingdom and yet displays considerable variation in its extent and form in the wild. Ecological factors, such as predation, competition, and microclimate, therefore are likely to play a strong role in shaping characteristics of sleep. Despite the potential for ecological factors to influence various aspects of sleep, the ecological context of sleep in non-avian reptiles remains understudied and without systematic direction. In this review, we examine multiple aspects of reptilian sleep, including (i) habitat selection (sleep sites and their spatio-temporal distribution), (ii) individual-level traits, such as behaviour (sleep postures), morphology (limb morphometrics and body colour), and physiology (sleep architecture), as well as (iii) inter-individual interactions (intra- and inter-specific). Throughout, we discuss the evidence of predation, competition, and thermoregulation in influencing sleep traits and the possible evolutionary consequences of these sleep traits for reptile sociality, morphological specialisation, and habitat partitioning. We also review the ways in which sleep ecology interacts with urbanisation, biological invasions, and climate change. Overall, we not only provide a systematic evaluation of the conceptual and taxonomic biases in the existing literature on reptilian sleep, but also use this opportunity to organise the various ecological hypotheses for sleep characteristics. By highlighting the gaps and providing a prospectus of research directions, our review sets the stage for understanding sleep ecology in the natural world.
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Affiliation(s)
- Nitya P Mohanty
- Centre for Ecological Sciences, Indian Institute of Science, Bangalore, 560 012, India
| | - Carla Wagener
- Centre for Invasion Biology, Department of Botany and Zoology, Stellenbosch University, Stellenbosch, Western Cape, 7600, South Africa
| | - Anthony Herrel
- Département Adaptations du Vivant, MECADEV UMR7179 CNRS/MNHN, Paris, France
| | - Maria Thaker
- Centre for Ecological Sciences, Indian Institute of Science, Bangalore, 560 012, India
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19
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Moerman F, Fronhofer EA, Altermatt F, Wagner A. Selection on growth rate and local adaptation drive genomic adaptation during experimental range expansions in the protist Tetrahymena thermophila. J Anim Ecol 2021; 91:1088-1103. [PMID: 34582573 PMCID: PMC9291582 DOI: 10.1111/1365-2656.13598] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2021] [Accepted: 09/19/2021] [Indexed: 11/29/2022]
Abstract
Populations that expand their range can undergo rapid evolutionary adaptation of life‐history traits, dispersal behaviour and adaptation to the local environment. Such adaptation may be aided or hindered by sexual reproduction, depending on the context. However, few empirical and experimental studies have investigated the genetic basis of adaptive evolution during range expansions. Even less attention has been given to the question how sexual reproduction may modulate such adaptive evolution during range expansions. We here studied genomic adaptation during experimental range expansions of the protist Tetrahymena thermophila in landscapes with a uniform environment or a pH gradient. Specifically, we investigated two aspects of genomic adaptation during range expansion. First, we investigated adaptive genetic change in terms of the underlying numbers of allele frequency changes from standing genetic variation and de novo variants. We focused on how sexual reproduction may alter this adaptive genetic change. Second, we identified genes subject to selection caused by the expanding range itself, and directional selection due to the presence or absence of the pH gradient. We focused this analysis on alleles with large frequency changes that occurred in parallel in more than one population to identify the most likely candidate targets of selection. We found that sexual reproduction altered adaptive genetic change both in terms of de novo variants and standing genetic variation. However, sexual reproduction affected allele frequency changes in standing genetic variation only in the absence of long‐distance gene flow. Adaptation to the range expansion affected genes involved in cell divisions and DNA repair, whereas adaptation to the pH gradient additionally affected genes involved in ion balance and oxidoreductase reactions. These genetic changes may result from selection on growth and adaptation to low pH. In the absence of gene flow, sexual reproduction may have aided genetic adaptation. Gene flow may have swamped expanding populations with maladapted alleles, thus reducing the extent of evolutionary adaptation during range expansion. Sexual reproduction also altered the genetic basis of adaptation in our evolving populations via de novo variants, possibly by purging deleterious mutations or by revealing fitness benefits of rare genetic variants.
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Affiliation(s)
- Felix Moerman
- Department of Evolutionary Biology and Environmental Studies, University of Zürich, Zürich, Switzerland.,Department of Aquatic Ecology, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland.,Swiss Institute of Bioinformatics, Quartier Sorge-Bâtiment Génopode, Lausanne, Switzerland.,ISEM, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | | | - Florian Altermatt
- Department of Evolutionary Biology and Environmental Studies, University of Zürich, Zürich, Switzerland.,Department of Aquatic Ecology, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland
| | - Andreas Wagner
- Department of Evolutionary Biology and Environmental Studies, University of Zürich, Zürich, Switzerland.,Swiss Institute of Bioinformatics, Quartier Sorge-Bâtiment Génopode, Lausanne, Switzerland.,The Santa Fe Institute, Santa Fe, NM, USA.,Stellenbosch Institute for Advanced Study (STIAS), Wallenberg Research Centre at Stellenbosch University, Stellenbosch, South Africa
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20
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Licata F, Andreone F, Crottini A, Harison RF, Ficetola GF. Does spatial sorting occur in the invasive Asian toad in Madagascar? Insights into the invasion unveiled by morphological analyses. J ZOOL SYST EVOL RES 2021. [DOI: 10.1111/jzs.12523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Fulvio Licata
- CIBIO Research Centre in Biodiversity and Genetic Resources InBIO Universidade do Porto, Campus Agrário de Vairão Vairão Portugal
- Departamento de Biologia Faculdade de Ciências da Universidade do Porto Porto Portugal
| | | | - Angelica Crottini
- CIBIO Research Centre in Biodiversity and Genetic Resources InBIO Universidade do Porto, Campus Agrário de Vairão Vairão Portugal
- Departamento de Biologia Faculdade de Ciências da Universidade do Porto Porto Portugal
| | - Rodino Fetraharijaona Harison
- ISSEDD (Institut Supérieur de Science, Environnement et Développement Durable) Université de Toamasina Toamasina Madagascar
- Madagascar Fauna and Flora Group Toamasina Madagascar
| | - Gentile Francesco Ficetola
- Department of Environmental Science and Policy Università degli Studi di Milano Milano Italy
- Laboratoire d’Ecologie Alpine CNRS Université Savoie Mont Blanc LECA Université Grenoble Alpes Grenoble France
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21
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Mayer M, Schlippe Justicia L, Shine R, Brown GP. Host defense or parasite cue: Skin secretions mediate interactions between amphibians and their parasites. Ecol Lett 2021; 24:1955-1965. [PMID: 34176205 DOI: 10.1111/ele.13832] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Revised: 04/21/2021] [Accepted: 05/26/2021] [Indexed: 12/30/2022]
Abstract
Amphibian skin secretions (substances produced by the amphibian plus microbiota) plausibly act as a first line of defense against parasite/pathogen attack, but may also provide chemical cues for pathogens. To clarify the role of skin secretions in host-parasite interactions, we conducted experiments using cane toads (Rhinella marina) and their lungworms (Rhabdias pseudosphaerocephala) from the range-core and invasion-front of the introduced anurans' range in Australia. Depending on the geographical area, toad skin secretions can reduce the longevity and infection success of parasite larvae, or attract lungworm larvae and enhance their infection success. These striking differences between the two regions were due both to differential responses of the larvae, and differential effects of the skin secretions. Our data suggest that skin secretions play an important role in host-parasite interactions in anurans, and that the arms race between a host and parasite can rapidly generate spatial variation in critical features of that interaction.
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Affiliation(s)
- Martin Mayer
- Department of Bioscience, Aarhus University, Aarhus, Denmark
| | - Lia Schlippe Justicia
- Department of Animal Biology, University of La Laguna, Tenerife, Canary Islands, Spain
| | - Richard Shine
- Department of Biological Sciences, Macquarie University, Sydney, NSW, Australia
| | - Gregory P Brown
- Department of Biological Sciences, Macquarie University, Sydney, NSW, Australia
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22
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Yamada H, Wada S. Morphological evolution reduces downstream displacement in juvenile landlocked salmon. Evolution 2021; 75:1850-1861. [PMID: 34080690 DOI: 10.1111/evo.14281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2020] [Revised: 05/05/2021] [Accepted: 05/07/2021] [Indexed: 11/29/2022]
Abstract
Severe flooding often leads to downstream displacement of aquatic animals. Despite this, many salmonid populations persist in habitats located upstream of tall barriers, such as artificial check dams and/or natural waterfalls, that completely block fishes from returning to the upstream areas after flooding. The evolution of such populations may be affected by spatial sorting due to differential rates of downstream displacement. This study examined whether a morphological trait (increased body depth) that allows individuals to better maintain their position during flooding has evolved in juvenile amago salmon Oncorhynchus masou ishikawae inhabiting above-barrier habitats in two rivers. In both rivers, juveniles collected at the stations with multiple downstream barriers had deeper bodies than those collected at other stations. Similar differences were found in juveniles reared in a common-garden experiment. Field experiments with natural flooding also indicated that deep bodies help juveniles resist downstream displacement. These results consistently suggest that juveniles in some above-barrier habitats have evolved deep bodies to resist downstream displacement due to flooding. Our study is the first to show the evolutionary outcomes of passive spatial sorting during severe climate events.
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Affiliation(s)
- Hiroyuki Yamada
- Laboratory of Marine Biology, Graduate School of Fisheries Science, Hokkaido University, Hakodate, 041-8611, Japan
| | - Satoshi Wada
- Laboratory of Marine Biology, Graduate School of Fisheries Science, Hokkaido University, Hakodate, 041-8611, Japan
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23
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Drapes S, Hall MD, Phillips BL. Effect of habitat permanence on life-history: extending the Daphnia model into new climate spaces. Evol Ecol 2021. [DOI: 10.1007/s10682-021-10119-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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24
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Sherpa S, Després L. The evolutionary dynamics of biological invasions: A multi-approach perspective. Evol Appl 2021; 14:1463-1484. [PMID: 34178098 PMCID: PMC8210789 DOI: 10.1111/eva.13215] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Revised: 02/22/2021] [Accepted: 03/02/2021] [Indexed: 01/02/2023] Open
Abstract
Biological invasions, the establishment and spread of non-native species in new regions, can have extensive economic and environmental consequences. Increased global connectivity accelerates introduction rates, while climate and land-cover changes may decrease the barriers to invasive populations spread. A detailed knowledge of the invasion history, including assessing source populations, routes of spread, number of independent introductions, and the effects of genetic bottlenecks and admixture on the establishment success, adaptive potential, and further spread, is crucial from an applied perspective to mitigate socioeconomic impacts of invasive species, as well as for addressing fundamental questions on the evolutionary dynamics of the invasion process. Recent advances in genomics together with the development of geographic information systems provide unprecedented large genetic and environmental datasets at global and local scales to link population genomics, landscape ecology, and species distribution modeling into a common framework to study the invasion process. Although the factors underlying population invasiveness have been extensively reviewed, analytical methods currently available to optimally combine molecular and environmental data for inferring invasive population demographic parameters and predicting further spreading are still under development. In this review, we focus on the few recent insect invasion studies that combine different datasets and approaches to show how integrating genetic, observational, ecological, and environmental data pave the way to a more integrative biological invasion science. We provide guidelines to study the evolutionary dynamics of invasions at each step of the invasion process, and conclude on the benefits of including all types of information and up-to-date analytical tools from different research areas into a single framework.
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Affiliation(s)
- Stéphanie Sherpa
- CNRSLECAUniversité Grenoble AlpesUniversité Savoie Mont BlancGrenobleFrance
| | - Laurence Després
- CNRSLECAUniversité Grenoble AlpesUniversité Savoie Mont BlancGrenobleFrance
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25
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Mortier F, Masier S, Bonte D. Genetically diverse populations spread faster in benign but not in challenging environments. Ecology 2021; 102:e03345. [PMID: 33742440 DOI: 10.1002/ecy.3345] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 01/22/2021] [Accepted: 02/05/2021] [Indexed: 11/06/2022]
Abstract
Population spread from a limited pool of founding propagules is at the basis of biological invasions. The size and genetic variation of these propagules eventually affect whether the invasion is successful or not. The inevitable bottleneck at introduction decreases genetic diversity, and therefore should affect population growth and spread. However, many heavily bottlenecked invasive populations have been successful in nature. Negative effects of a genetic bottleneck are typically considered to be relaxed in benign environments because of a release from stress. Despite its relevance to understand and predict invasions, empirical evidence on the role of genetic diversity in relation to habitat quality is largely lacking. We use the mite Tetranychus urticae Koch as a model to experimentally assess spread rate and size of genetically depleted inbred populations vs. enriched mixed populations. This was assessed in replicated linear patch systems consisting of benign (bean), challenging (tomato), or a gradient (bean to tomato) habitat. As expected, we found no effect of genetic diversity on population size in benign habitat but found that it increased population size in challenging habitat. However, we found that population spread rates were increased due to genetic diversity in the benign but not in the challenging habitat. Additionally, variance in spread was consistently higher in genetically poor populations and highest in the challenging habitat. Our experiment challenges the general view that a bottleneck in genetic variation decreases invasion success in challenging but not benign environments.
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Affiliation(s)
- Frederik Mortier
- Terrestrial Ecology Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, Ghent, 9000, Belgium
| | - Stefano Masier
- Terrestrial Ecology Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, Ghent, 9000, Belgium
| | - Dries Bonte
- Terrestrial Ecology Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, Ghent, 9000, Belgium
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26
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Urquhart CA, Williams JL. Trait correlations and landscape fragmentation jointly alter expansion speed via evolution at the leading edge in simulated range expansions. THEOR ECOL-NETH 2021. [DOI: 10.1007/s12080-021-00503-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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27
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Hofmeister NR, Werner SJ, Lovette IJ. Environmental correlates of genetic variation in the invasive European starling in North America. Mol Ecol 2021; 30:1251-1263. [PMID: 33464634 DOI: 10.1111/mec.15806] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2019] [Revised: 12/17/2020] [Accepted: 01/04/2021] [Indexed: 12/31/2022]
Abstract
Populations of invasive species that colonize and spread in novel environments may differentiate both through demographic processes and local selection. European starlings (Sturnus vulgaris) were introduced to New York in 1890 and subsequently spread throughout North America, becoming one of the most widespread and numerous bird species on the continent. Genome-wide comparisons across starling individuals and populations can identify demographic and/or selective factors that facilitated this rapid and successful expansion. We investigated patterns of genomic diversity and differentiation using reduced-representation genome sequencing of 17 winter-season sampling sites. Consistent with this species' high dispersal rate and rapid expansion history, we found low geographical differentiation and few FST outliers even at a continental scale. Despite starting from a founding population of ~180 individuals, North American starlings show only a moderate genetic bottleneck, and models suggest a dramatic increase in effective population size since introduction. In genotype-environment associations we found that ~200 single-nucleotide polymorphisms are correlated with temperature and/or precipitation against a background of negligible genome- and range-wide divergence. Given this evidence, we suggest that local adaptation in North American starlings may have evolved rapidly even in this wide-ranging and evolutionarily young system. This survey of genomic signatures of expansion in North American starlings is the most comprehensive to date and complements ongoing studies of world-wide local adaptation in these highly dispersive and invasive birds.
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Affiliation(s)
- Natalie R Hofmeister
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA.,Fuller Evolutionary Biology Program, Cornell Lab of Ornithology, Cornell University, Ithaca, NY, USA
| | - Scott J Werner
- United States Department of Agriculture, Animal and Plant Health Inspection Service, Wildlife Services, National Wildlife Research Center, Fort Collins, CO, USA
| | - Irby J Lovette
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA.,Fuller Evolutionary Biology Program, Cornell Lab of Ornithology, Cornell University, Ithaca, NY, USA
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28
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Keenan VA, Cornell SJ. Anomalous invasion dynamics due to dispersal polymorphism and dispersal-reproduction trade-offs. Proc Biol Sci 2021; 288:20202825. [PMID: 33434455 PMCID: PMC7892423 DOI: 10.1098/rspb.2020.2825] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
Abstract
Dispersal polymorphism and mutation play significant roles during biological invasions, potentially leading to evolution and complex behaviour such as accelerating or decelerating invasion fronts. However, life-history theory predicts that reproductive fitness-another key determinant of invasion dynamics-may be lower for more dispersive strains. Here, we use a mathematical model to show that unexpected invasion dynamics emerge from the combination of heritable dispersal polymorphism, dispersal-fitness trade-offs, and mutation between strains. We show that the invasion dynamics are determined by the trade-off relationship between dispersal and population growth rates of the constituent strains. We find that invasion dynamics can be 'anomalous' (i.e. faster than any of the strains in isolation), but that the ultimate invasion speed is determined by the traits of, at most, two strains. The model is simple but generic, so we expect the predictions to apply to a wide range of ecological, evolutionary, or epidemiological invasions.
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Affiliation(s)
- Vincent A Keenan
- Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK
| | - Stephen J Cornell
- Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK
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29
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Angert AL, Bontrager MG, Ågren J. What Do We Really Know About Adaptation at Range Edges? ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2020. [DOI: 10.1146/annurev-ecolsys-012120-091002] [Citation(s) in RCA: 43] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Recent theory and empirical evidence have provided new insights regarding how evolutionary forces interact to shape adaptation at stable and transient range margins. Predictions regarding trait divergence at leading edges are frequently supported. However, declines in fitness at and beyond edges show that trait divergence has sometimes been insufficient to maintain high fitness, so identifying constraints to adaptation at range edges remains a key challenge. Indirect evidence suggests that range expansion may be limited by adaptive genetic variation, but direct estimates of genetic constraints at and beyond range edges are still scarce. Sequence data suggest increased genetic load in edge populations in several systems, but its causes and fitness consequences are usually poorly understood. The balance between maladaptive and positive effects of gene flow on fitness at range edges deserves further study. It is becoming increasingly clear that characterizations about degree of adaptation based solely on geographical peripherality are unsupported.
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Affiliation(s)
- Amy L. Angert
- Departments of Botany and Zoology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - Megan G. Bontrager
- Department of Evolution and Ecology, University of California, Davis, California 95616, USA
| | - Jon Ågren
- Department of Ecology and Genetics, Uppsala University, SE-752 36 Uppsala, Sweden
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30
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Miller TEX, Angert AL, Brown CD, Lee-Yaw JA, Lewis M, Lutscher F, Marculis NG, Melbourne BA, Shaw AK, Szűcs M, Tabares O, Usui T, Weiss-Lehman C, Williams JL. Eco-evolutionary dynamics of range expansion. Ecology 2020; 101:e03139. [PMID: 32697876 DOI: 10.1002/ecy.3139] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Revised: 05/05/2020] [Accepted: 06/08/2020] [Indexed: 01/31/2023]
Abstract
Understanding the movement of species' ranges is a classic ecological problem that takes on urgency in this era of global change. Historically treated as a purely ecological process, range expansion is now understood to involve eco-evolutionary feedbacks due to spatial genetic structure that emerges as populations spread. We synthesize empirical and theoretical work on the eco-evolutionary dynamics of range expansion, with emphasis on bridging directional, deterministic processes that favor evolved increases in dispersal and demographic traits with stochastic processes that lead to the random fixation of alleles and traits. We develop a framework for understanding the joint influence of these processes in changing the mean and variance of expansion speed and its underlying traits. Our synthesis of recent laboratory experiments supports the consistent role of evolution in accelerating expansion speed on average, and highlights unexpected diversity in how evolution can influence variability in speed: results not well predicted by current theory. We discuss and evaluate support for three classes of modifiers of eco-evolutionary range dynamics (landscape context, trait genetics, and biotic interactions), identify emerging themes, and suggest new directions for future work in a field that stands to increase in relevance as populations move in response to global change.
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Affiliation(s)
- Tom E X Miller
- Program in Ecology and Evolutionary Biology, Department of BioSciences, Rice University, Houston, Texas, 77005, USA
| | - Amy L Angert
- Department of Botany, University of British Columbia, Vancouver, British Columbia, V6T 1Z2, Canada
| | - Carissa D Brown
- Department of Geography, Memorial University, 230 Elizabeth Avenue, St John's, Newfoundland and Labrador, A1B 3X9, Canada
| | - Julie A Lee-Yaw
- Department of Botany, University of British Columbia, Vancouver, British Columbia, V6T 1Z2, Canada.,Department of Biological Sciences, University of Lethbridge, 4401 University Drive, Lethbridge, Alberta, T1K 3M4, Canada
| | - Mark Lewis
- Department of Mathematical and Statistical Sciences, University of Alberta, Edmonton, Alberta, T6G 2G1, Canada.,Department of Biological Sciences, University of Alberta, Edmonton, Alberta, T6G 2G1, Canada
| | - Frithjof Lutscher
- Department of Mathematics and Statistics, and Department of Biology, University of Ottawa, Ottawa, Ottawa, K1N 6N5, Canada
| | - Nathan G Marculis
- Department of Mathematical and Statistical Sciences, University of Alberta, Edmonton, Alberta, T6G 2G1, Canada.,Department of Environmental Science and Policy, University of California-Davis, Davis, California, 95616, USA
| | - Brett A Melbourne
- Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, Colorado, 80309, USA
| | - Allison K Shaw
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, 55108, USA
| | - Marianna Szűcs
- Department of Entomology, Michigan State University, 288 Farm Lane, East Lansing, Michigan, 48824, USA
| | - Olivia Tabares
- Department of Geography and Biodiversity Research Centre, University of British Columbia, 1984 West Mall, Vancouver, British Columbia, V6T 1Z2, Canada
| | - Takuji Usui
- Department of Botany, University of British Columbia, Vancouver, British Columbia, V6T 1Z2, Canada
| | - Christopher Weiss-Lehman
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, 55108, USA
| | - Jennifer L Williams
- Department of Geography and Biodiversity Research Centre, University of British Columbia, 1984 West Mall, Vancouver, British Columbia, V6T 1Z2, Canada
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31
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Coates A, Phillips BL, Oppedal F, Bui S, Overton K, Dempster T. Parasites under pressure: salmon lice have the capacity to adapt to depth-based preventions in aquaculture. Int J Parasitol 2020; 50:865-872. [PMID: 32652129 DOI: 10.1016/j.ijpara.2020.05.009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Revised: 05/04/2020] [Accepted: 05/12/2020] [Indexed: 10/23/2022]
Abstract
The evolution of pesticide resistance has driven renewed interest in non-chemical pest controls in agriculture. Spatial manipulations (physical barriers and fallowing, for example) can be an effective method of prevention, but these too might impose selection and cause rapid adaptation in pests. In salmon aquaculture, various non-chemical approaches have emerged to combat parasitic salmon lice (Lepeophtheirus salmonis) - a major pest with clear signs of evolved chemical resistance. 'Depth-based' preventions, now widely implemented, reduce infestation rates by physically segregating salmon from lice in their infective copepodid stage occurring in surface waters. Copepodids distributed deeper in the water column, however, can bypass these barriers and infest farms. If swimming depth is a heritable trait, we may see rapid evolutionary shifts in response to widespread depth-based prevention. We collected lice from Norwegian salmon farms and assayed more than 11,250 of their laboratory-reared offspring across 37 families. The vertical distributions of copepodids were measured using experimental water columns pressurised to simulate conditions at 0, 5 and 10 m depths. We demonstrated that lice respond strongly to hydrostatic pressure: an increase in pressure doubled the number of lice that migrated to the top of columns. There was also a large effect of family on this response, with the percentage of lice ascending to the top of pressurised columns ranging from 17 to 79% across families. Families with a weak swimming response to pressure are expected to occur deeper in the water column and so be more likely to infest farms employing depth-based preventions. If this between-family variation reflects genetic variation, then the parasite population may have the capacity to adapt to preventative measures. Such adaptation would have important commercial and ecological implications.
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Affiliation(s)
- Andrew Coates
- Sustainable Aquaculture Laboratory - Temperate and Tropical (SALTT), School of BioSciences, University of Melbourne, Victoria 3010, Australia; Spatial Ecology and Evolution Lab (SpEEL), School of BioSciences, University of Melbourne, Victoria 3010, Australia
| | - Ben L Phillips
- Spatial Ecology and Evolution Lab (SpEEL), School of BioSciences, University of Melbourne, Victoria 3010, Australia
| | - Frode Oppedal
- Institute of Marine Research, Matre Aquaculture Research Station, 5984 Matredal, Norway
| | - Samantha Bui
- Institute of Marine Research, Matre Aquaculture Research Station, 5984 Matredal, Norway
| | - Kathy Overton
- Sustainable Aquaculture Laboratory - Temperate and Tropical (SALTT), School of BioSciences, University of Melbourne, Victoria 3010, Australia
| | - Tim Dempster
- Sustainable Aquaculture Laboratory - Temperate and Tropical (SALTT), School of BioSciences, University of Melbourne, Victoria 3010, Australia.
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32
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33
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Ochocki BM, Saltz JB, Miller TEX. Demography-Dispersal Trait Correlations Modify the Eco-Evolutionary Dynamics of Range Expansion. Am Nat 2020; 195:231-246. [DOI: 10.1086/706904] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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34
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Peischl S, Gilbert KJ. Evolution of Dispersal Can Rescue Populations from Expansion Load. Am Nat 2020; 195:349-360. [DOI: 10.1086/705993] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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35
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The effect of random dispersal on competitive exclusion – A review. Math Biosci 2019; 318:108271. [DOI: 10.1016/j.mbs.2019.108271] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Revised: 10/11/2019] [Accepted: 10/11/2019] [Indexed: 12/11/2022]
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36
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Williams JL, Hufbauer RA, Miller TE. How Evolution Modifies the Variability of Range Expansion. Trends Ecol Evol 2019; 34:903-913. [DOI: 10.1016/j.tree.2019.05.012] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2018] [Revised: 05/21/2019] [Accepted: 05/24/2019] [Indexed: 12/16/2022]
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37
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Clarke GS, Shine R, Phillips BL. May the (selective) force be with you: Spatial sorting and natural selection exert opposing forces on limb length in an invasive amphibian. J Evol Biol 2019; 32:994-1001. [DOI: 10.1111/jeb.13504] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Revised: 06/06/2019] [Accepted: 06/20/2019] [Indexed: 01/03/2023]
Affiliation(s)
- Gregory S. Clarke
- School of Life and Environmental Sciences University of Sydney Sydney NSW Australia
| | - Richard Shine
- School of Life and Environmental Sciences University of Sydney Sydney NSW Australia
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