1
|
Kaur T, Devi R, Negi R, Kumar S, Singh S, Rustagi S, Shreaz S, Rai AK, Kour D, Yadav AN. Microbial consortium with multifunctional attributes for the plant growth of eggplant (Solanum melongena L.). Folia Microbiol (Praha) 2024; 69:1255-1266. [PMID: 38668814 DOI: 10.1007/s12223-024-01168-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Accepted: 04/17/2024] [Indexed: 10/17/2024]
Abstract
In the past few decades, the pressure of higher food production to satisfy the demand of ever rising population has inevitably increased the use synthetic agrochemicals which have deterioration effects. Biostimulants containing beneficial microbes (single inoculants and microbial consortium) were found as an ideal substitute of synthetic chemical fertilizers. In recent years, microbial consortium is known as a better bioinoculant in comparison to single inoculant bioformulation because of multifarious plant growth-promoting advantages. Looking at the advantageous effect of consortium, in present investigation, different bacteria were isolated from rhizospheric soil and plant samples collected from the Himalayan mountains on the green slopes of the Shivaliks, Himachal Pradesh. The isolated bacteria were screened for nitrogen (N) fixation, phosphorus (P) solubilization and potassium (K) solubilization plant growth promoting attributes, and efficient strains were identified through 16S rRNA gene sequencing and BLASTn analysis. The bacteria showing a positive effect in NPK uptake were developed as bacterial consortium for the growth promotion of eggplant crop. A total of 188 rhizospheric and endophytic bacteria were sorted out, among which 13 were exhibiting nitrogenase activity, whereas 43 and 31 were exhibiting P and K solubilization traits, respectively. The selected three efficient and potential bacterial strains were identified using 16S rRNA gene sequencing as Enterobacter ludwigii EU-BEN-22 (N-fixer; 35.68 ± 00.9 nmol C2H4 per mg protein per h), Micrococcus indicus EU-BRP-6 (P-solubilizer; 201 ± 0.004 mg/L), and Pseudomonas gessardii EU-BRK-55 (K-solubilizer; 51.3 ± 1.7 mg/mL), and they were used to develop a bacterial consortium. The bacterial consortium evaluation on eggplant resulted in the improvement of growth (root/shoot length and biomass) and physiological parameters (chlorophyll, carotenoids, total soluble sugar, and phenolic content) of the plants with respect to single culture inoculation, chemical fertilizer, and untreated control. A bacterial consortium having potential to promote plant growth could be used as bioinoculant for horticulture crops growing in hilly regions.
Collapse
Affiliation(s)
- Tanvir Kaur
- Department of Biotechnology, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmaur, 173101, Himachal Pradesh, India
| | - Rubee Devi
- Department of Biotechnology, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmaur, 173101, Himachal Pradesh, India
| | - Rajeshwari Negi
- Department of Biotechnology, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmaur, 173101, Himachal Pradesh, India
| | - Sanjeev Kumar
- Faculty of Agricultural Sciences, GLA University, Mathura, Uttar Pradesh, India
| | - Sangram Singh
- Department of Biochemistry, Dr. Ram Manohar Lohia Avadh University, Faizabad, Uttar Pradesh, India
| | - Sarvesh Rustagi
- Department of Food Technology, School of Applied and Life Sciences, Uttaranchal University, Dehradun, Uttarakhand, India
| | - Sheikh Shreaz
- Environment and Life Sciences Research Center, Kuwait Institute for Scientific Research, PO Box 24885, 13109, Safat, Kuwait City, Kuwait
| | - Ashutosh Kumar Rai
- Department of Biochemistry, College of Medicine, Imam Abdulrahman Bin Faisal University, Dammam, Kingdom of Saudi Arabia
| | - Divjot Kour
- Department of Microbiology, Akal College of Basic Sciences, Eternal University, , Baru Sahib, Sirmaur, 173101, Himachal Pradesh, India
| | - Ajar Nath Yadav
- Department of Biotechnology, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmaur, 173101, Himachal Pradesh, India.
- Department of Biotechnology, Faculty of Health and Life Sciences, INTI International University, Persiaran Perdana BBN Putra, Nilai, 71800, Negeri Sembilan, Malaysia.
| |
Collapse
|
2
|
Tiwari P, Ansari WA, Kumar SC, Tiwari PK, Kumar M, Chakdar H, Srivastava AK, Saxena AK, Shantikumar L. Genetic Diversity and Functional Potential of Streptomyces spp. Isolated from Pachmarhi Biosphere Reserve, India. Curr Microbiol 2024; 81:397. [PMID: 39377919 DOI: 10.1007/s00284-024-03927-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Accepted: 09/26/2024] [Indexed: 10/09/2024]
Abstract
Streptomyces is a diverse genus, well known for producing a wide array of metabolites that have significant industrial utilization. The present study investigates the genetic and functional diversity of Streptomyces spp. isolated from the Pachmarhi Biosphere Reserve (PBR), India, an unexplored site. The 16S rRNA gene sequencing and analysis revealed 96 isolates belonging to 40 different species indicating a substantial phylogenetic diversity. The strains were clustered into two groups: a major cluster with 94 strains and a small cluster with two strains. BOX- PCR analyses revealed an incredible genetic diversity existing among the strains of Streptomyces spp. in PBR. The analyses revealed the intra-species diversity and inter-species closeness within the genus Streptomyces in the study area. Qualitative screening for enzyme production has shown that 53, 42, 41, 11, and 54 strains tested positive for CMCase, xylanase, amylase, pectinase, and β-glucosidase, respectively. Additionally, 54 strains tested positive for PHB production. The strains were assayed quantitatively for the production of CMCase, xylanase, amylase, and pectinase. Streptomyces sp. MP9-2, Streptomyces sp. MP10-11, Streptomyces sp. MP10-18, and Streptomyces sp. MP10-6 recorded maximum CMCase (0.604 U/mL), xylanase (0.553 U/mL), amylase (1.714 U/mL), and pectinase (13.15 U/mL) activities, respectively. Furthermore, several strains demonstrated plant growth-promoting traits, viz. zinc and phosphate solubilization and production of ammonia, HCN (hydrogen cyanide), and IAA (Indole acetic acid), and nitrogen fixation. Fifty strains showed antifungal activity against Fusarium oxysporum f. sp. lycopersici with inhibitions ranging from 7.5 to 47.5%. Current findings underscore the ecological and biotechnological significance of Streptomyces spp. in the unexplored habitat of PBR.
Collapse
Affiliation(s)
- Pushpendra Tiwari
- ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, 275103, India
| | - Waquar Akhter Ansari
- ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, 275103, India
| | - Shiv Charan Kumar
- ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, 275103, India
| | - Praveen Kumar Tiwari
- ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, 275103, India
| | - Murugan Kumar
- ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, 275103, India.
| | - Hillol Chakdar
- ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, 275103, India
| | | | - Anil Kumar Saxena
- ICAR-National Bureau of Agriculturally Important Microorganisms, Mau, 275103, India
| | - Laishram Shantikumar
- Department of Microbiology, Faculty of Science, Assam Down Town University, Guwahati, 781026, India
| |
Collapse
|
3
|
Pathak D, Suman A, Dass A, Sharma P, Krishnan A, Gond S. Enhancing wheat growth and nutrient content through integrated microbial and non-microbial biostimulants. PHYSIOLOGIA PLANTARUM 2024; 176:e14485. [PMID: 39237125 DOI: 10.1111/ppl.14485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2024] [Accepted: 06/25/2024] [Indexed: 09/07/2024]
Abstract
This study focused on two aspects: to develop a selected functionally competent bacterial community, and its integrated with biostimulant humic acid and seaweed extract which was validated to enhance wheat growth and nutrient content. Wheat and maize-associated bacterial isolates (92) were screened for Plant Growth-Promoting traits (PGPts-72) and Community-Forming traits (CFts-66). 46 isolates possessed both kinds of traits, of which 20 isolates were chosen based on high Bonitur scale ratings. Based on metabolic diversity, growth rate, and compatibility, 11 isolates were grouped to make a synthetic microbial community (SM). Non-microbial biostimulants, humic acid (HA) and seaweed extract (SWE) were used, and 0.2% HA and 1% SWE were found to be optimal for bacterial and plant growth. SM integrated each with 0.2% HA and 1% SWE, leading to products SynBio1 (SM + HA) and SynBio2 (SM + SWE). Under microcosm study, SynBio1 and SynBio2 improved germination by 90.10% and 83.80%, respectively. SynBio1 increased chlorophyll content by 40.5 SPAD units, root length by 15.7%, and shoot length by 18.4%. Field level validations revealed that SynBio1 increased plant height by 15.76%, root length by 27.16%, and flag leaf length by 21.35% compared to the control. The grain yield with SynBio1 was 40.41% higher than that of the control. Macro and micronutrient analysis of seeds treated with SynBio1 showed significant improvements. These findings demonstrate the potential of integrating microbial communities with biostimulants, and they pave the way for developing novel bioinoculants for sustainable agriculture and promoting a healthier environment.
Collapse
Affiliation(s)
- Devashish Pathak
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Archna Suman
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Anchal Dass
- Division of Agronomy, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Pushpendra Sharma
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Aswini Krishnan
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Shrikant Gond
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| |
Collapse
|
4
|
Nicotra D, Ghadamgahi F, Ghosh S, Anzalone A, Dimaria G, Mosca A, Massimino ME, Vetukuri RR, Catara V. Genomic insights and biocontrol potential of ten bacterial strains from the tomato core microbiome. FRONTIERS IN PLANT SCIENCE 2024; 15:1437947. [PMID: 39253574 PMCID: PMC11381245 DOI: 10.3389/fpls.2024.1437947] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Accepted: 08/05/2024] [Indexed: 09/11/2024]
Abstract
Introduction Despite their adverse environmental effects, modern agriculture relies heavily on agrochemicals to manage diseases and pests and enhance plant growth and productivity. Some of these functions could instead be fulfilled by endophytes from the plant microbiota, which have diverse activities beneficial for plant growth and health. Methods We therefore used a microbiome-guided top-down approach to select ten bacterial strains from different taxa in the core microbiome of tomato plants in the production chain for evaluation as potential bioinoculants. High-quality genomes for each strain were obtained using Oxford Nanopore long-read and Illumina short-read sequencing, enabling the dissection of their genetic makeup to identify phyto-beneficial traits. Results Bacterial strains included both taxa commonly used as biofertilizers and biocontrol agents (i.e. Pseudomonas and Bacillus) as well as the less studied genera Leclercia, Chryseobacterium, Glutamicibacter, and Paenarthorbacter. When inoculated in the tomato rhizosphere, these strains promoted plant growth and reduced the severity of Fusarium Crown and Root Rot and Bacterial Spot infections. Genome analysis yielded a comprehensive inventory of genes from each strain related to processes including colonization, biofertilization, phytohormones, and plant signaling. Traits directly relevant to fertilization including phosphate solubilization and acquisition of nitrogen and iron were also identified. Moreover, the strains carried several functional genes putatively involved in abiotic stress alleviation and biotic stress management, traits that indirectly foster plant health and growth. Discussion This study employs a top-down approach to identify new plant growth-promoting rhizobacteria (PGPRs), offering an alternative to the conventional bottom-up strategy. This method goes beyond the traditional screening of the strains and thus can expand the range of potential bioinoculants available for market application, paving the way to the use of new still underexplored genera.
Collapse
Affiliation(s)
- Daniele Nicotra
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
- Department of Biomedical and Biotechnological Sciences, University of Catania, Catania, Italy
| | - Farideh Ghadamgahi
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Samrat Ghosh
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Alice Anzalone
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
| | - Giulio Dimaria
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
| | - Alexandros Mosca
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
| | - Maria Elena Massimino
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
| | - Ramesh Raju Vetukuri
- Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Vittoria Catara
- Department of Agriculture, Food and Environment, University of Catania, Catania, Italy
| |
Collapse
|
5
|
Wael D, El-Amier Y, Saber WIA, Elsayed A. Plant-associated halotolerant bacteria improving growth of Vicia faba L. Mariout-2 under salinity conditions. Sci Rep 2024; 14:16737. [PMID: 39033227 PMCID: PMC11271455 DOI: 10.1038/s41598-024-66504-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Accepted: 07/02/2024] [Indexed: 07/23/2024] Open
Abstract
In this comprehensive investigation, we successfully isolated and characterized 40 distinct plant-associated halotolerant bacteria strains obtained from three halophytic plant species: Tamarix nilotica, Suaeda pruinosa, and Arthrocnemum macrostachyum. From this diverse pool of isolates, we meticulously selected five exceptional plant-associated halotolerant bacteria strains through a judiciously designed seed biopriming experiment and then identified molecularly. Bacillus amyloliquefaciens DW6 was isolated from A. macrostachyum. Three bacteria (Providencia rettgeri DW3, Bacillus licheniformis DW4, and Salinicoccus sesuvii DW5) were isolated for the first time from T. nilotica, S. pruinosa and S. pruinosa, respectively. Paenalcaligenes suwonensis DW7 was isolated for the first time from A. macrostachyum. These plant-associated halotolerant bacteria exhibited growth-promoting activities, including phosphate solubilization, nitrogen fixation, and production of bioactive compounds, i.e., ammonia, phytohormones, hydrogen cyanide, siderophores, and exopolysaccharides. A controlled laboratory experiment was conducted to reduce the detrimental impact of soil salinity. Vicia faba seedlings were inoculated individually or in mixtures by the five most effective plant-associated halotolerant bacteria to reduce the impact of salt stress and improve growth parameters. The growth parameters were significantly reduced due to the salinity stress in the control samples, compared to the experimental ones. The unprecedented novelty of our findings is underscored by the demonstrable efficacy of co-inoculation with these five distinct bacterial types as a pioneering bio-approach for countering the deleterious effects of soil salinity on plant growth. This study thus presents a remarkable contribution to the field of plant science and offers a promising avenue for sustainable agriculture in saline environments.
Collapse
Affiliation(s)
- Dalia Wael
- Botany Department, Faculty of Science, Mansoura University, Mansoura, 35516, Egypt.
| | - Yasser El-Amier
- Botany Department, Faculty of Science, Mansoura University, Mansoura, 35516, Egypt
| | - Wesameldin I A Saber
- Microbial Activity Unit, Microbiology Department, Soils, Water and Environment Research Institute, Agricultural Research Center, Giza, 12619, Egypt
| | - Ashraf Elsayed
- Botany Department, Faculty of Science, Mansoura University, Mansoura, 35516, Egypt.
| |
Collapse
|
6
|
Samanta D, Rauniyar S, Saxena P, Sani RK. From genome to evolution: investigating type II methylotrophs using a pangenomic analysis. mSystems 2024; 9:e0024824. [PMID: 38695578 PMCID: PMC11237726 DOI: 10.1128/msystems.00248-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Accepted: 04/04/2024] [Indexed: 06/19/2024] Open
Abstract
A comprehensive pangenomic approach was employed to analyze the genomes of 75 type II methylotrophs spanning various genera. Our investigation revealed 256 exact core gene families shared by all 75 organisms, emphasizing their crucial role in the survival and adaptability of these organisms. Additionally, we predicted the functionality of 12 hypothetical proteins. The analysis unveiled a diverse array of genes associated with key metabolic pathways, including methane, serine, glyoxylate, and ethylmalonyl-CoA (EMC) metabolic pathways. While all selected organisms possessed essential genes for the serine pathway, Methylooceanibacter marginalis lacked serine hydroxymethyltransferase (SHMT), and Methylobacterium variabile exhibited both isozymes of SHMT, suggesting its potential to utilize a broader range of carbon sources. Notably, Methylobrevis sp. displayed a unique serine-glyoxylate transaminase isozyme not found in other organisms. Only nine organisms featured anaplerotic enzymes (isocitrate lyase and malate synthase) for the glyoxylate pathway, with the rest following the EMC pathway. Methylovirgula sp. 4MZ18 stood out by acquiring genes from both glyoxylate and EMC pathways, and Methylocapsa sp. S129 featured an A-form malate synthase, unlike the G-form found in the remaining organisms. Our findings also revealed distinct phylogenetic relationships and clustering patterns among type II methylotrophs, leading to the proposal of a separate genus for Methylovirgula sp. 4M-Z18 and Methylocapsa sp. S129. This pangenomic study unveils remarkable metabolic diversity, unique gene characteristics, and distinct clustering patterns of type II methylotrophs, providing valuable insights for future carbon sequestration and biotechnological applications. IMPORTANCE Methylotrophs have played a significant role in methane-based product production for many years. However, a comprehensive investigation into the diverse genetic architectures across different genera of methylotrophs has been lacking. This study fills this knowledge gap by enhancing our understanding of core hypothetical proteins and unique enzymes involved in methane oxidation, serine, glyoxylate, and ethylmalonyl-CoA pathways. These findings provide a valuable reference for researchers working with other methylotrophic species. Furthermore, this study not only unveils distinctive gene characteristics and phylogenetic relationships but also suggests a reclassification for Methylovirgula sp. 4M-Z18 and Methylocapsa sp. S129 into separate genera due to their unique attributes within their respective genus. Leveraging the synergies among various methylotrophic organisms, the scientific community can potentially optimize metabolite production, increasing the yield of desired end products and overall productivity.
Collapse
Affiliation(s)
- Dipayan Samanta
- Department of Chemical and Biological Engineering, South Dakota School of Mines and Technology, Rapid City, South Dakota, USA
- BuG ReMeDEE Consortium, South Dakota School of Mines and Technology, Rapid City, South Dakota, USA
| | - Shailabh Rauniyar
- Department of Chemical and Biological Engineering, South Dakota School of Mines and Technology, Rapid City, South Dakota, USA
- 2-Dimensional Materials for Biofilm Engineering, Science and Technology, South Dakota School of Mines and Technology, Rapid City, South Dakota, USA
| | - Priya Saxena
- Department of Chemical and Biological Engineering, South Dakota School of Mines and Technology, Rapid City, South Dakota, USA
- Data Driven Material Discovery Center for Bioengineering Innovation, South Dakota School of Mines and Technology, Rapid City, South Dakota, USA
| | - Rajesh K Sani
- Department of Chemical and Biological Engineering, South Dakota School of Mines and Technology, Rapid City, South Dakota, USA
- BuG ReMeDEE Consortium, South Dakota School of Mines and Technology, Rapid City, South Dakota, USA
- 2-Dimensional Materials for Biofilm Engineering, Science and Technology, South Dakota School of Mines and Technology, Rapid City, South Dakota, USA
- Data Driven Material Discovery Center for Bioengineering Innovation, South Dakota School of Mines and Technology, Rapid City, South Dakota, USA
| |
Collapse
|
7
|
Reddy BD, Kumar B, Sahni S, Yashaswini G, Karthik S, Reddy MSS, Kumar R, Mukherjee U, Krishna KS. Harnessing the power of native biocontrol agents against wilt disease of Pigeonpea incited by Fusarium udum. Sci Rep 2024; 14:12500. [PMID: 38822009 PMCID: PMC11143286 DOI: 10.1038/s41598-024-60039-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Accepted: 04/18/2024] [Indexed: 06/02/2024] Open
Abstract
Fusarium wilt, caused by (Fusarium udum Butler), is a significant threat to pigeonpea crops worldwide, leading to substantial yield losses. Traditional approaches like fungicides and resistant cultivars are not practical due to the persistent and evolving nature of the pathogen. Therefore, native biocontrol agents are considered to be more sustainable solution, as they adapt well to local soil and climatic conditions. In this study, five isolates of F. udum infecting pigeonpea were isolated from various cultivars and characterized morphologically and molecularly. The isolate from the ICP 8858 cultivar displayed the highest virulence of 90%. Besides, 100 endophytic bacteria, 100 rhizosphere bacteria and three Trichoderma spp. were isolated and tested against F. udum isolated from ICP 8858 under in vitro conditions. Out of the 200 bacteria tested, nine showed highest inhibition, including Rb-4 (Bacillus sp.), Rb-11 (B. subtilis), Rb-14 (B. megaterium), Rb-18 (B. subtilis), Rb-19 (B. velezensis), Eb-8 (Bacillus sp.), Eb-11 (B. subtilis), Eb-13 (P. aeruginosa), and Eb-21 (P. aeruginosa). Similarly, Trichoderma spp. were identified as T. harzianum, T. asperellum and Trichoderma sp. Notably, Rb-18 (B. subtilis) and Eb-21 (P. aeruginosa) exhibited promising characteristics such as the production of hydrogen cyanide (HCN), cellulase, siderophores, ammonia and nutrient solubilization. Furthermore, treating pigeonpea seedlings with these beneficial microorganisms led to increased levels of key enzymes (POD, PPO, and PAL) associated with resistance to Fusarium wilt, compared to untreated controls. In field trials conducted for four seasons, the application of these potential biocontrol agents as seed treatments on the susceptible ICP2376 cultivar led to the lowest disease incidence. Specifically, treatments T2 (33.33) (P. aeruginosa) and T3 (35.41) (T. harzianium) exhibited the lowest disease incidence, followed by T6 (36.5) (Carbendizim), T1 (36.66) (B. subtilis), T4 (52.91) (T. asperellum) and T5 (53.33) (Trichoderma sp.). Results of this study revealed that, P. aeruginosa (Eb-21), B. subtilis (Rb-18) and T. harzianum can be used for plant growth promotion and management of Fusarium wilt of pigeonpea.
Collapse
Affiliation(s)
- B Deepak Reddy
- Department of Plant Pathology, Dr. Rajendra Prasad Central Agricultural University, Pusa, Bihar, India.
| | - Birendra Kumar
- Department of Plant Pathology, Dr. Rajendra Prasad Central Agricultural University, Pusa, Bihar, India
| | - Sangita Sahni
- Department of Plant Pathology, Dr. Rajendra Prasad Central Agricultural University, Pusa, Bihar, India
| | - G Yashaswini
- Department of Entomology, Dr. Rajendra Prasad Central Agricultural University, Pusa, Bihar, India
| | - Somala Karthik
- Department of Entomology, Dr. Rajendra Prasad Central Agricultural University, Pusa, Bihar, India
| | - M S Sai Reddy
- Department of Entomology, Dr. Rajendra Prasad Central Agricultural University, Pusa, Bihar, India
| | - Rajeev Kumar
- Department of Agricultural Biotechnology and Molecular Biology, Dr. Rajendra Prasad, Central Agricultural University, Pusa, Bihar, India
| | - U Mukherjee
- Department of Entomology, Dr. Rajendra Prasad Central Agricultural University, Pusa, Bihar, India
| | - K Sai Krishna
- Department of Basic Sciences and Languages, Dr. Rajendra Prasad Central Agricultural University, Pusa, Bihar, India
| |
Collapse
|
8
|
Xiao J, Huang J, Xiao K, Li G, Yang S, He Y. How different of the rhizospheric and endophytic microbial compositions in watermelons with different fruit shapes. PLoS One 2024; 19:e0302462. [PMID: 38753836 PMCID: PMC11098346 DOI: 10.1371/journal.pone.0302462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Accepted: 04/03/2024] [Indexed: 05/18/2024] Open
Abstract
Fruit shape is an important character of watermelon. And the compositions of rhizospheric and endophytic microorganisms of watermelon with different fruit shape also remains unclear. To elucidate the biological mechanism of watermelon fruit shape formations, the rhizospheric and endophytic microbial community compositions between oval (OW) and circular watermelons (CW) were analyzed. The results showed that except of the rhizospheric bacterial richness (P < 0.05), the rhizospheric and endophytic microbial (bacterial and fungal) diversity were not statistically significant between OW and CW (P > 0.05). However, the endophytic microbial (bacterial and fungal) compositions were significantly different. Firstly, Bacillus, Rhodanobacter, Cupriavidus, Luteimonas, and Devosia were the unique soil dominant bacterial genera in rhizospheres of circular watermelon (CW); In contrast, Nocardioides, Ensifer, and Saccharomonospora were the special soil dominant bacterial genera in rhizospheres of oval watermelons (OW); Meanwhile, Cephalotrichum, Neocosmospora, Phialosimplex, and Papulaspora were the unique soil dominant fungal genera in rhizospheres of circular watermelon (CW); By contrast, Acremonium, Cladosporium, Cryptococcus_f__Tremellaceae, Sodiomyces, Microascus, Conocybe, Sporidiobolus, and Acremonium were the unique soil dominant fungal genera in rhizospheres of oval watermelons (OW). Additionally, Lechevalieria, Pseudorhodoferax, Pseudomonas, Massilia, Flavobacterium, Aeromicrobium, Stenotrophomonas, Pseudonocardia, Novosphingobium, Melittangium, and Herpetosiphon were the unique dominant endophytic bacterial genera in stems of CW; In contrast, Falsirhodobacter, Kocuria, and Kineosporia were the special dominant endophytic genera in stems of OW; Moreover, Lectera and Fusarium were the unique dominant endophytic fungal genera in stems of CW; By contrast, Cercospora only was the special dominant endophytic fungal genus in stems of OW. All above results suggested that watermelons with different fruit shapes exactly recruited various microorganisms in rhizospheres and stems. Meanwhile, the enrichments of the different rhizosphric and endophytic microorganisms could be speculated in relating to watermelon fruit shapes formation.
Collapse
Affiliation(s)
- Jian Xiao
- Guangxi Key Laboratory of Agro-Environment and Agro-Products Safety, National Demonstration Center for Experimental Plant Science Education, Agricultural College, Guangxi University, Nanning, 530004, P. R. China
- Longping Branch, College of Biology, Hunan University, Changsha, 410125, Hunan, P. R. China
| | - Jinyan Huang
- Horticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, 530007, Guangxi, P. R. China
| | - Kezhuo Xiao
- Guangxi Key Laboratory of Agro-Environment and Agro-Products Safety, National Demonstration Center for Experimental Plant Science Education, Agricultural College, Guangxi University, Nanning, 530004, P. R. China
| | - Guifen Li
- Horticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, 530007, Guangxi, P. R. China
| | - Shangdong Yang
- Guangxi Key Laboratory of Agro-Environment and Agro-Products Safety, National Demonstration Center for Experimental Plant Science Education, Agricultural College, Guangxi University, Nanning, 530004, P. R. China
| | - Yi He
- Horticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, 530007, Guangxi, P. R. China
| |
Collapse
|
9
|
Pathak D, Suman A, Sharma P, Aswini K, Govindasamy V, Gond S, Anshika R. Community-forming traits play role in effective colonization of plant-growth-promoting bacteria and improved plant growth. FRONTIERS IN PLANT SCIENCE 2024; 15:1332745. [PMID: 38533409 PMCID: PMC10963436 DOI: 10.3389/fpls.2024.1332745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Accepted: 02/21/2024] [Indexed: 03/28/2024]
Abstract
Community-forming traits (CFts) play an important role in the effective colonization of plant-growth-promoting bacterial communities that influence host plants positively by modulating their adaptive functions. In this study, by considering plant-growth-promoting traits (PGPts) and community-forming traits (CFts), three communities were constructed, viz., SM1 (PGPts), SM2 (CFts), and SM3 (PGPts+CFts). Each category isolates were picked up on the basis of their catabolic diversity of different carbon sources. Results revealed a distinctive pattern in the colonization of the communities possessed with CF traits. It was observed that the community with CFts colonized inside the plant in groups or in large aggregations, whereas the community with only PGPts colonized as separate individual and small colonies inside the plant root and leaf. The effect of SM3 in the microcosm experiment was more significant than the uninoculated control by 22.12%, 27.19%, and 9.11% improvement in germination percentage, chlorophyll content, and plant biomass, respectively. The significant difference shown by the microbial community SM3 clearly demonstrates the integrated effect of CFts and PGPts on effective colonization vis-à-vis positive influence on the host plant. Further detailed characterization of the interaction will take this technology ahead in sustainable agriculture.
Collapse
Affiliation(s)
| | - Archna Suman
- Division of Microbiology, Indian Council of Agricultural Research (ICAR)-Indian Agricultural Research Institute, New Delhi, India
| | | | | | | | | | | |
Collapse
|
10
|
Das R, Bharadwaj P, Thakur D. Insights into the functional role of Actinomycetia in promoting plant growth and biocontrol in tea (Camellia sinensis) plants. Arch Microbiol 2024; 206:65. [PMID: 38227026 DOI: 10.1007/s00203-023-03789-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 11/30/2023] [Accepted: 12/08/2023] [Indexed: 01/17/2024]
Abstract
Tea, a highly aromatic and globally consumed beverage, is derived from the aqueous infusion of dried leaves of Camellia sinensis (L.) O. Kuntze. Northeast India, encompassing an expansive geographical area between 24° and 27° N latitude and 88° and 95° E longitude, is a significant tea-producing region covering approximately 312,210 hectares. Despite its prominence, this region faces persistent challenges owing to a conducive climate that harbors the prevalence of pests, fungal pathogens, and weeds, necessitating agrochemicals. Helopeltis theivora, Oligonychus coffeae, and Biston suppressaria are prominent among the tea pests in this region. Concurrently, tea plants encounter fungal infections such as blister blight, brown root rot, and Fusarium dieback. The growing demand for safer tea production and the need to reduce pesticide and fertilizer usage has spurred interest in exploring biological control methods. This review focuses on Actinomycetia, which potentially safeguards plants from diseases and pest infestations by producing many bioactive substances. Actinomycetia, which resides in the tea rhizosphere and internal plant tissues, can produce antagonistic secondary metabolites and extracellular enzymes while promoting plant growth. Harnessing the biocontrol potential of Actinomycetia offers a promising solution to enhance tea production, while minimizing reliance on harmful agrochemicals, contributing to a more environmentally conscious and economically viable tea cultivation system.
Collapse
Affiliation(s)
- Rictika Das
- Microbial Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology, Guwahati, Assam, 781035, India
- Department of Molecular Biology and Biotechnology, Cotton University, Guwahati, Assam, 781001, India
| | - Pranami Bharadwaj
- Microbial Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology, Guwahati, Assam, 781035, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Debajit Thakur
- Microbial Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology, Guwahati, Assam, 781035, India.
| |
Collapse
|
11
|
Patowary R, Jain P, Malakar C, Devi A. Biodegradation of carbofuran by Pseudomonas aeruginosa S07: biosurfactant production, plant growth promotion, and metal tolerance. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:115185-115198. [PMID: 37878173 DOI: 10.1007/s11356-023-30466-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 10/10/2023] [Indexed: 10/26/2023]
Abstract
Pesticides are an indispensable part of modern farming as it aids in controlling pests and hence increase crop yield. But, unmanaged use of pesticides is a growing concern for safety and conservation of the environment. In the present study, a novel biosurfactant-producing bacterium, Pseudomonas aeruginosa S07, was utilized to degrade carbofuran pesticide, and it was obtained at 150 mg/L concentration; 89.2% degradation was achieved on the 5th day of incubation in in vitro culture condition. GC-MS (gas chromatography and mass spectrometry) and LC-MS (liquid chromatography and mass spectrometry) analyses revealed the presence of several degradation intermediates such as hydroxycarbofurnan, ketocarbofuran, and hydroxybenzofuran, in the degradation process. The bacterium was found to exhibit tolerance towards several heavy metals: Cu, Co, Zn, Ni, and Cd, where maximum and least tolerance were obtained against Co and Ni, respectively. Additionally, the bacterium also possesses plant growth-promoting activity showing positive results in nitrogen fixation, phosphate solubilising, ammonia production, and potassium solubilizing assays. Thus, from the study, it can be assumed that the bacterium can be useful in the production of bioformulation for remediation and rejuvenation of pesticide-contaminated sites in the coming days.
Collapse
Affiliation(s)
- Rupshikha Patowary
- Department of Biotechnology, The Assam Royal Global University, Betkuchi, Guwahati, Assam, 781035, India
- Environmental Chemistry Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology, Paschim Boragaon, Guwahati, Assam, 781 035, India
| | - Prerna Jain
- Environmental Chemistry Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology, Paschim Boragaon, Guwahati, Assam, 781 035, India
| | - Chandana Malakar
- Microbial Biotechnology and Protein Research Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology, Paschim Boragaon, Guwahati, Assam, 781 035, India
| | - Arundhuti Devi
- Environmental Chemistry Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology, Paschim Boragaon, Guwahati, Assam, 781 035, India.
| |
Collapse
|
12
|
Salwan R, Rana A, Saini R, Sharma A, Sharma M, Sharma V. Diversity analysis of endophytes with antimicrobial and antioxidant potential from Viola odorata: an endemic plant species of the Himalayas. Braz J Microbiol 2023; 54:2361-2374. [PMID: 37227628 PMCID: PMC10484869 DOI: 10.1007/s42770-023-01010-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Accepted: 05/19/2023] [Indexed: 05/26/2023] Open
Abstract
Viola odorata, also known as "Banafshah" in high altitudes of Himalayas, is well known for its pharmaceutical importance in Ayurvedic and Unani medicinal system. The plant is a source of various drugs for its anti-inflammatory, diaphoretic, diuretic, emollient, expectorant, antipyretic, and laxative properties. The endophytes of plants have been reported for their role in modulating various physiological and biological processes of the host plants. In the present study, a total of 244 endophytes were isolated in pure cultures from the roots of Viola odorata, and genetic diversity was evaluated using amplified ribosomal DNA restriction analysis (ARDRA) and enterobacterial repetitive intergenic consensus (ERIC). The molecular fingerprinting revealed variation among various rRNA types among morphologically different endophytes based on ARDRA and ERIC-PCR. The screening of endophytes showed antimicrobial activity of 11 bacterial isolates and one actinomycete SGA9 against various pathogens Bacillus cereus, Escherichia coli, Listeria monocytogenes, Pseudomonas aeruginosa, Staphylococcus aureus, and Staphylococcus epidermidis. The antioxidant activity revealed the majority of the bacterial isolates able to scavenge the free radical in the range of 10-50% and 8 bacterial isolates in the range of 50-85%. Principal component analysis separated eight isolates away from the central eclipse and form a separate group based on antimicrobial and antioxidant potential. The identification of these eight isolates showed affiliation with different species of the genus Enterobacter, Microbacterium, Pseudomonas, Rhizobium, and Streptomyces. This is the first report on the characterization of endophytic bacteria and actinomycetes from endemic Viola odorata. Results suggested that these endophytes could be explored for the production of antimicrobial and antioxidant products.
Collapse
Affiliation(s)
- Richa Salwan
- College of Horticulture and Forestry (Dr. YS Parmar University of Horticulture and Forestry), Neri, Hamirpur (HP), 177 001, India.
| | - Aditi Rana
- College of Horticulture and Forestry (Dr. YS Parmar University of Horticulture and Forestry), Neri, Hamirpur (HP), 177 001, India
| | - Raj Saini
- College of Horticulture and Forestry (Dr. YS Parmar University of Horticulture and Forestry), Neri, Hamirpur (HP), 177 001, India
| | - Amit Sharma
- College of Horticulture and Forestry (Dr. YS Parmar University of Horticulture and Forestry), Neri, Hamirpur (HP), 177 001, India
| | - Monica Sharma
- College of Horticulture and Forestry (Dr. YS Parmar University of Horticulture and Forestry), Neri, Hamirpur (HP), 177 001, India
| | - Vivek Sharma
- University Centre for Research and Development, Chandigarh University, Gharuan, Mohali (PB.), 140 413, India
| |
Collapse
|
13
|
Enagbonma BJ, Fadiji AE, Ayangbenro AS, Babalola OO. Communication between Plants and Rhizosphere Microbiome: Exploring the Root Microbiome for Sustainable Agriculture. Microorganisms 2023; 11:2003. [PMID: 37630562 PMCID: PMC10458600 DOI: 10.3390/microorganisms11082003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Revised: 07/25/2023] [Accepted: 07/31/2023] [Indexed: 08/27/2023] Open
Abstract
Plant roots host numerous microorganisms around and inside their roots, forming a community known as the root microbiome. An increasing bulk of research is underlining the influences root-associated microbial communities can have on plant health and development. However, knowledge on how plant roots and their associated microbes interact to bring about crop growth and yield is limited. Here, we presented (i) the communication strategies between plant roots and root-associated microbes and (ii) the applications of plant root-associated microbes in enhancing plant growth and yield. This review has been divided into three main sections: communications between root microbiome and plant root; the mechanism employed by root-associated microbes; and the chemical communication mechanisms between plants and microbes and their application in plant growth and yield. Understanding how plant root and root-associated microbes communicate is vital in designing ecofriendly strategies for targeted disease suppression and improved plant growth that will help in sustainable agriculture. Ensuring that plants become healthy and productive entails keeping plants under surveillance around the roots to recognize disease-causing microbes and similarly exploit the services of beneficial microorganisms in nutrient acquisition, stress mitigation, and growth promotion.
Collapse
Affiliation(s)
| | | | | | - Olubukola Oluranti Babalola
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Mail Bag X2046, Mmabatho 2735, South Africa
| |
Collapse
|
14
|
Chauhan M, Kimothi A, Sharma A, Pandey A. Cold adapted Pseudomonas: ecology to biotechnology. Front Microbiol 2023; 14:1218708. [PMID: 37529326 PMCID: PMC10388556 DOI: 10.3389/fmicb.2023.1218708] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Accepted: 06/26/2023] [Indexed: 08/03/2023] Open
Abstract
The cold adapted microorganisms, psychrophiles/psychrotolerants, go through several modifications at cellular and biochemical levels to alleviate the influence of low temperature stress conditions. The low temperature environments depend on these cold adapted microorganisms for various ecological processes. The ability of the microorganisms to function in cold environments depends on the strategies directly associated with cell metabolism, physicochemical constrains, and stress factors. Pseudomonas is one among such group of microorganisms which is predominant in cold environments with a wide range of ecological and biotechnological applications. Bioformulations of Pseudomonas spp., possessing plant growth promotion and biocontrol abilities for application under low temperature environments, are well documented. Further, recent advances in high throughput sequencing provide essential information regarding the prevalence of Pseudomonas in rhizospheres and their role in plant health. Cold adapted species of Pseudomonas are also getting recognition for their potential in biodegradation and bioremediation of environmental contaminants. Production of enzymes and bioactive compounds (primarily as an adaptation mechanism) gives way to their applications in various industries. Exopolysaccharides and various biotechnologically important enzymes, produced by cold adapted species of Pseudomonas, are making their way in food, textiles, and pharmaceuticals. The present review, therefore, aims to summarize the functional versatility of Pseudomonas with particular reference to its peculiarities along with the ecological and biotechnological applications.
Collapse
Affiliation(s)
- Mansi Chauhan
- Department of Microbiology, Graphic Era (Deemed to be University), Dehradun, Uttarakhand, India
| | - Ayushi Kimothi
- Department of Microbiology, Graphic Era (Deemed to be University), Dehradun, Uttarakhand, India
| | - Avinash Sharma
- National Centre for Cell Science, Pune, Maharashtra, India
| | - Anita Pandey
- Department of Biotechnology, Graphic Era (Deemed to be University), Dehradun, Uttarakhand, India
| |
Collapse
|
15
|
Hereira-Pacheco SE, Estrada-Torres A, Dendooven L, Navarro-Noya YE. Shifts in root-associated fungal communities under drought conditions in Ricinus communis. FUNGAL ECOL 2023. [DOI: 10.1016/j.funeco.2023.101225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
|
16
|
Jalal A, Oliveira CEDS, Rosa PAL, Galindo FS, Teixeira Filho MCM. Beneficial Microorganisms Improve Agricultural Sustainability under Climatic Extremes. Life (Basel) 2023; 13:life13051102. [PMID: 37240747 DOI: 10.3390/life13051102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2023] [Revised: 04/08/2023] [Accepted: 04/24/2023] [Indexed: 05/28/2023] Open
Abstract
The challenging alterations in climate in the last decades have had direct and indirect influences on biotic and abiotic stresses that have led to devastating implications on agricultural crop production and food security. Extreme environmental conditions, such as abiotic stresses, offer great opportunities to study the influence of different microorganisms in plant development and agricultural productivity. The focus of this review is to highlight the mechanisms of plant growth-promoting microorganisms (especially bacteria and fungi) adapted to environmental induced stresses such as drought, salinity, heavy metals, flooding, extreme temperatures, and intense light. The present state of knowledge focuses on the potential, prospective, and biotechnological approaches of plant growth-promoting bacteria and fungi to improve plant nutrition, physio-biochemical attributes, and the fitness of plants under environmental stresses. The current review focuses on the importance of the microbial community in improving sustainable crop production under changing climatic scenarios.
Collapse
Affiliation(s)
- Arshad Jalal
- Department of Plant Health, Rural Engineering and Soils, Faculty of Engineering, São Paulo State University (UNESP), Av. Brasil 56-Centro, Ilha Solteira 15385-000, SP, Brazil
| | - Carlos Eduardo da Silva Oliveira
- Department of Plant Health, Rural Engineering and Soils, Faculty of Engineering, São Paulo State University (UNESP), Av. Brasil 56-Centro, Ilha Solteira 15385-000, SP, Brazil
| | - Poliana Aparecida Leonel Rosa
- Department of Plant Health, Rural Engineering and Soils, Faculty of Engineering, São Paulo State University (UNESP), Av. Brasil 56-Centro, Ilha Solteira 15385-000, SP, Brazil
| | - Fernando Shintate Galindo
- Faculty of Agricultural Sciences and Technology, São Paulo State University (UNESP), Campus of Dracena, Sao Paulo 17900-000, SP, Brazil
| | - Marcelo Carvalho Minhoto Teixeira Filho
- Department of Plant Health, Rural Engineering and Soils, Faculty of Engineering, São Paulo State University (UNESP), Av. Brasil 56-Centro, Ilha Solteira 15385-000, SP, Brazil
| |
Collapse
|
17
|
Jamwal VL, Rather IA, Ahmed S, Kumar A, Gandhi SG. Changing Rhizosphere Microbial Community and Metabolites with Developmental Stages of Coleus barbatus. Microorganisms 2023; 11:microorganisms11030705. [PMID: 36985280 PMCID: PMC10056624 DOI: 10.3390/microorganisms11030705] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 02/25/2023] [Accepted: 02/27/2023] [Indexed: 03/12/2023] Open
Abstract
Coleus barbatus is a medicinal herb belonging to Lamiaceae. It is the only living organism known to produce forskolin, which is a labdane diterpene and is reported to activate adenylate cyclase. Microbes associated with plants play an important role in maintaining plant health. Recently, the targeted application of beneficial plant-associated microbes and their combinations in abiotic and biotic stress tolerance has gained momentum. In this work, we carried out the rhizosphere metagenome sequencing of C. barbatus at different developmental stages to understand how rhizosphere microflora are affected by and affect the metabolite content in plants. We found that the Kaistobacter genus was abundantly present in the rhizosphere of C. barbatus and its accumulation pattern appears to correlate with the quantities of forskolin in the roots at different developmental stages. Members of the Phoma genus, known for several pathogenic species, were in lower numbers in the C. barbatus rhizosphere in comparison with C. blumei. To our knowledge, this is the first metagenomic study of the rhizospheric microbiome of C. barbatus, which may help to explore and exploit the culturable and non-culturable microbial diversity present in the rhizosphere.
Collapse
Affiliation(s)
- Vijay Lakshmi Jamwal
- CSIR-Indian Institute of Integrative Medicine, Jammu 180001, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | | | - Sajad Ahmed
- CSIR-Indian Institute of Integrative Medicine, Jammu 180001, India
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar 143005, India
| | - Amit Kumar
- CSIR-Indian Institute of Integrative Medicine, Jammu 180001, India
| | - Sumit G. Gandhi
- CSIR-Indian Institute of Integrative Medicine, Jammu 180001, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
- Correspondence: or
| |
Collapse
|
18
|
Kour D, Yadav AN. Alleviation of cold stress in wheat with psychrotrophic phosphorus solubilizing Acinetobacter rhizosphaerae EU-KL44. Braz J Microbiol 2023; 54:371-383. [PMID: 36740643 PMCID: PMC9944473 DOI: 10.1007/s42770-023-00913-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Accepted: 01/26/2023] [Indexed: 02/07/2023] Open
Abstract
Low-temperature stress can seriously impair plant physiology. Chilling injury leads to a complex array of cellular dysfunctions, and symptoms include chlorosis, sterility, loss of vigor, wilting, and even death of the plants. Furthermore, phosphorus limitations additionally halt the growth of plants. Low-temperature adaptive plant growth-promoting microbes through various direct and indirect mechanisms help in the survival of plants under stress conditions. The present investigation deals with isolation of P-solubilizing psychrotrophic bacteria from diverse cultivars of wheat grown in the Keylong region of Himachal Pradesh. A total of 33 P-solubilizing bacterial isolates were obtained. P-solubilizers were screened for different plant growth-promoting (PGP) attributes of K and Zn solubilization, production of IAA, siderophores, and different hydrolytic enzymes. Among 33 P-solubilizers, 8 efficient strains exhibiting multiple PGP attributes were used as bioinoculants for wheat under low-temperature stress in different in vitro and in vivo experiments. The psychrotrophic bacterial isolates positively influenced the growth and physiological parameters as well as nutrient uptake and yield of wheat and efficiently alleviated low-temperature stress. The potential of low-temperature stress adaptive and PGP microbes can be utilized in agricultural sector for amelioration of low-temperature stress and plant growth promotion. The present study deals with the isolation of psychrotrophic P-solubilizers with multiple PGP attributes and their role in alleviation of cold stress in wheat.
Collapse
Affiliation(s)
- Divjot Kour
- Department of Microbiology, Akal College of Basic Sciences, Eternal University, Baru Sahib, Sirmour, 173101, India
| | - Ajar Nath Yadav
- Department of Biotechnology, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmour, 173101, India.
| |
Collapse
|
19
|
Gamit HA, Naik H, Chandarana KA, Chandwani S, Amaresan N. Secondary metabolites from methylotrophic bacteria: their role in improving plant growth under a stressed environment. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:28563-28574. [PMID: 36710311 DOI: 10.1007/s11356-023-25505-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 01/18/2023] [Indexed: 06/18/2023]
Abstract
Climate change is considered a natural disaster that causes the ecosystem to fluctuate and increase temperature, as well as the amount of UV radiation (UV-A and UV-B) on the Earth's surface. Consequently, greenhouse gases such as chlorofluorocarbons, methane, nitrogen oxide, and carbon dioxide have become obstacles to the development of sustainable agriculture. To overcome environmental stress such as phytopathogens, drought, salinity, heavy metals, and high-low temperatures, the utilization of microorganisms is a viable option. The synthesis of secondary metabolites by methylotrophic bacteria improves plant metabolism, enhances tolerance, and facilitates growth. The genus Methylobacterium is a pink-pigmented facultative methylotrophs which abundantly colonizes plants, especially young leaves, owing to the availability of methanol. Secondary metabolites such as amino acids, carotenoids, hormones, antimicrobial compounds, and other compounds produced by methylotrophic bacteria enhance plant metabolism under stress conditions. Therefore, in this review, we discuss the role of secondary metabolites produced by methylotrophic bacteria and their role in promoting plant growth under stress.
Collapse
Affiliation(s)
- Harshida A Gamit
- C. G. Bhakta Institute of Biotechnology, Uka Tarsadia University, Maliba Campus, Bardoli, Surat, 394 350, Gujarat, India
| | - Hetvi Naik
- C. G. Bhakta Institute of Biotechnology, Uka Tarsadia University, Maliba Campus, Bardoli, Surat, 394 350, Gujarat, India
| | - Komal A Chandarana
- C. G. Bhakta Institute of Biotechnology, Uka Tarsadia University, Maliba Campus, Bardoli, Surat, 394 350, Gujarat, India
| | - Sapna Chandwani
- C. G. Bhakta Institute of Biotechnology, Uka Tarsadia University, Maliba Campus, Bardoli, Surat, 394 350, Gujarat, India
| | - Natarajan Amaresan
- C. G. Bhakta Institute of Biotechnology, Uka Tarsadia University, Maliba Campus, Bardoli, Surat, 394 350, Gujarat, India.
| |
Collapse
|
20
|
Aswini K, Suman A, Sharma P, Singh PK, Gond S, Pathak D. Seed endophytic bacterial profiling from wheat varieties of contrasting heat sensitivity. FRONTIERS IN PLANT SCIENCE 2023; 14:1101818. [PMID: 37089648 PMCID: PMC10117849 DOI: 10.3389/fpls.2023.1101818] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 03/10/2023] [Indexed: 05/03/2023]
Abstract
Wheat yield can be limited by many biotic and abiotic factors. Heat stress at the grain filling stage is a factor that reduces wheat production tremendously. The potential role of endophytic microorganisms in mitigating plant stress through various biomolecules like enzymes and growth hormones and also by improving plant nutrition has led to a more in-depth exploration of the plant microbiome for such functions. Hence, we devised this study to investigate the abundance and diversity of wheat seed endophytic bacteria (WSEB) from heatS (heat susceptible, GW322) and heatT (heat tolerant, HD3298 and HD3271) varieties by culturable and unculturable approaches. The results evidenced that the culturable diversity was higher in the heatS variety than in the heatT variety and Bacillus was found to be dominant among the 10 different bacterial genera identified. Though the WSEB population was higher in the heatS variety, a greater number of isolates from the heatT variety showed tolerance to higher temperatures (up to 55°C) along with PGP activities such as indole acetic acid (IAA) production and nutrient acquisition. Additionally, the metagenomic analysis of seed microbiota unveiled higher bacterial diversity, with a predominance of the phyla Proteobacteria covering >50% of OTUs, followed by Firmicutes and Actinobacteria. There were considerable variations in the abundance and diversity between heat sensitivity contrasting varieties, where notably more thermophilic bacterial OTUs were observed in the heatT samples, which could be attributed to conferring tolerance against heat stress. Furthermore, exploring the functional characteristics of culturable and unculturable microbiomes would provide more comprehensive information on improving plant growth and productivity for sustainable agriculture.
Collapse
Affiliation(s)
- Krishnan Aswini
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Archna Suman
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
- *Correspondence: Archna Suman,
| | - Pushpendra Sharma
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Pradeep Kumar Singh
- Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Shrikant Gond
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| | - Devashish Pathak
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
| |
Collapse
|
21
|
Meena M, Yadav G, Sonigra P, Nagda A, Mehta T, Swapnil P, Marwal A, Zehra A. Advantageous features of plant growth-promoting microorganisms to improve plant growth in difficult conditions. PLANT-MICROBE INTERACTION - RECENT ADVANCES IN MOLECULAR AND BIOCHEMICAL APPROACHES 2023:279-296. [DOI: 10.1016/b978-0-323-91876-3.00019-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
|
22
|
Hnini M, Taha K, Aurag J. Molecular identification and characterization of phytobeneficial osmotolerant endophytic bacteria inhabiting root nodules of the Saharan tree Vachellia tortilis subsp. raddiana. Arch Microbiol 2022; 205:45. [PMID: 36576567 DOI: 10.1007/s00203-022-03358-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Revised: 11/17/2022] [Accepted: 11/28/2022] [Indexed: 12/29/2022]
Abstract
Nodular endophytes of drought-tolerant legumes are understudied. For this reason, we have isolated and studied non-symbiotic endophytic bacteria from nodules of Vachellia tortilis subsp. raddiana, a leguminous tree adapted to the harsh arid climate of Southern Morocco. Rep-PCR analysis followed by 16S rDNA sequencing revealed two main genera, Pseudomonas and Bacillus. Isolates responded variably to salt and water stresses, and mostly produced exopolysaccharides. Differences concerned also plant growth-promoting activities: phosphate, potassium, and zinc solubilization; biological nitrogen fixation; auxin, siderophore, ammonia, and HCN production; and ACC deaminase activity. Some strains exhibited antagonistic activities against phytopathogenic fungi (Fusarium oxysporum and Botrytis cinerea) and showed at least two enzymatic activities (cellulase, protease, chitinase). Four selected strains inoculated to vachellia plants under controlled conditions have shown significant positive impacts on plant growth parameters. These strains are promising bio-inoculants for vachellia plants to be used in reforestation programs in arid areas increasingly threatened by desertification.
Collapse
Affiliation(s)
- Mohamed Hnini
- Microbiology and Molecular Biology Team, Center of Plant and Microbial Biotechnology, Biodiversity and Environment, Faculty of Sciences, Mohammed V University in Rabat, Avenue Ibn Battouta, BP 1014, 10000, Rabat, Morocco
| | - Kaoutar Taha
- Microbiology and Molecular Biology Team, Center of Plant and Microbial Biotechnology, Biodiversity and Environment, Faculty of Sciences, Mohammed V University in Rabat, Avenue Ibn Battouta, BP 1014, 10000, Rabat, Morocco
| | - Jamal Aurag
- Microbiology and Molecular Biology Team, Center of Plant and Microbial Biotechnology, Biodiversity and Environment, Faculty of Sciences, Mohammed V University in Rabat, Avenue Ibn Battouta, BP 1014, 10000, Rabat, Morocco.
| |
Collapse
|
23
|
Negi R, Kaur T, Devi R, Kour D, Yadav AN. Assessment of nitrogen-fixing endophytic and mineral solubilizing rhizospheric bacteria as multifunctional microbial consortium for growth promotion of wheat and wild wheat relative Aegilops kotschyi. Heliyon 2022; 8:e12579. [PMID: 36601433 PMCID: PMC9806681 DOI: 10.1016/j.heliyon.2022.e12579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2022] [Revised: 11/17/2022] [Accepted: 12/15/2022] [Indexed: 12/26/2022] Open
Abstract
Microbes play crucial functions in maintaining the health and growth of the plants directly or indirectly by supplying nutrients. These microbes could be used as biofertilizers for the enhancement of soil health and growth of crops. In preset investigation, potential microbes from endophytic and rhizospheric region of Aegilops kotschyi growing in green slopes of Shivaliks, Himachal Pradesh were sorted out and screened for plant growth promoting attributes including phosphorus and potassium solubilization. The potential bacterial strains were identified through 16S rRNA gene sequencing and developed as microbial consortium for the plant growth of wheat and wild wheat relative Aegilops kotschyi. A total 125 isolates of bacteria were sorted out and among them 36 were found as P-solubilizers and 19 showed K-solubilization attribute and two highly potential bacterial strain were identified as Bacillus tropicus EU-ARP-44 (P-solubilizer; 270.5 ± 0.00 mg L-1) and B. megaterium EU-ARK-23 (K-Solubilizer; 51.3 ± 1.7 mg mL-1). The microbial consortium of Rahnella sp. strain EU-A3SNfb (N-fixer; MN294545), B. tropicus EU-ARP-44 (P-solubilizer) and B. megaterium EU-ARK-23 (K-solubilizer) evaluation in Aegilops kotschyi and wheat crop resulted in the enhancement of growth as well as physiological parameter including shoot/root length, fresh/dry weight and chlorophyll, carotenoid, total soluble sugar content, phenolic and flavonoid content as compared to un-inoculated control. Microbial consortium consisting of potential plant growth promoting (PGP) bacterial strains could be used as biofertilizer and bioinoculants in cereals crop growing in hilly region.
Collapse
Affiliation(s)
- Rajeshwari Negi
- Microbial Biotechnology Laboratory, Department of Biotechnology, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmour, 173101, Himachal Pradesh, India
| | - Tanvir Kaur
- Microbial Biotechnology Laboratory, Department of Biotechnology, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmour, 173101, Himachal Pradesh, India
| | - Rubee Devi
- Microbial Biotechnology Laboratory, Department of Biotechnology, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmour, 173101, Himachal Pradesh, India
| | - Divjot Kour
- Department of Microbiology, Akal College of Basic Sciences, Eternal University, Baru Sahib, Sirmour, 173101, Himachal Pradesh, India
| | - Ajar Nath Yadav
- Microbial Biotechnology Laboratory, Department of Biotechnology, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmour, 173101, Himachal Pradesh, India,Corresponding author.;
| |
Collapse
|
24
|
Plant growth promotion of pearl millet (Pennisetum glaucum L.) by novel bacterial consortium with multifunctional attributes. Biologia (Bratisl) 2022. [DOI: 10.1007/s11756-022-01291-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
|
25
|
Kaur T, Devi R, Kumar S, Kour D, Yadav AN. Synergistic Effect of Endophytic and Rhizospheric Microbes for Plant Growth Promotion of Foxtail Millet (Setaria italica L.). NATIONAL ACADEMY SCIENCE LETTERS 2022. [DOI: 10.1007/s40009-022-01190-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
|
26
|
Hosseinihashemi SK, Hosseinashrafi SK, Barzegari F, Baseri H, Tajeddini D, Torabi Tooranposhti H, Jalaligoldeh A, Sheikh Mohammadi F. Chemical composition of essential oil from female cones of Cupressus arizonica Greene. Nat Prod Res 2022:1-7. [PMID: 36448408 DOI: 10.1080/14786419.2022.2152021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Abstract
The hydrodistilled volatile essential oils extracted from the female cones of Cupressus arizonica Greene that harvested in winter and spring seasons were analysed for their chemical composition by using gas chromatography-mass spectrometry (GC/MS). Twenty-four and seventeen components were identified, accounting for winter (95.5%) and spring (96.9%) of the total oils volume, respectively. Monoterpenoids (winter 93.7% and spring 95.0%) dominated the identified components in the essential oils, followed by a small portion of sesquiterpenoids (winter 1.8% and spring 1.9%). Monoterpene hydrocarbons (MH) (winter 90.9% and spring 94.9%) were the principal subclasses of components with α-pinene (winter 42% and spring 72%), β-myrcene (winter 18.5% and spring 7.7%), δ-3-carene (winter 11.3% and spring 5.1%), limonene (9.4% for winter), and β-pinene (5.3% for spring) as main constituents. Limonene (9.4%), camphor (0.2%), exo-methylcamphenilol (0.2%), terpinene-4-ol (0.6%), β-citronellol (0.9%), and bornyl acetate (0.3%) were representative of the monoterpene hydrocarbon and oxygen-containing monoterpenoids (OM) in winter essential oil.
Collapse
Affiliation(s)
| | | | | | - Hadi Baseri
- School of Chemistry, Damghan University, Damghan, Iran
| | - Darya Tajeddini
- Department of Horticultural Sciences, Karaj Branch, Islamic Azad University, Karaj, Iran
| | | | - Abbas Jalaligoldeh
- Department of Horticultural Sciences, Karaj Branch, Islamic Azad University, Karaj, Iran
| | | |
Collapse
|
27
|
Suriyachadkun C, Chunhachart O, Srithaworn M, Tangchitcharoenkhul R, Tangjitjareonkun J. Zinc-Solubilizing Streptomyces spp. as Bioinoculants for Promoting the Growth of Soybean ( Glycine max (L.) Merrill). J Microbiol Biotechnol 2022; 32:1435-1446. [PMID: 36330749 PMCID: PMC9720072 DOI: 10.4014/jmb.2206.06058] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 10/05/2022] [Accepted: 10/12/2022] [Indexed: 11/06/2022]
Abstract
Zinc-solubilizing bacteria can convert the insoluble form of zinc into soluble forms available to plants. This study was conducted to isolate and screen zinc-solubilizing actinobacteria from rhizosphere soils and to assess their effect on vegetable soybean growth. In total, 200 actinobacteria strains belonging to 10 genera were isolated from rhizosphere soil samples. Among these isolates, four showed zinc solubilization with solubilizing index values ranging from 3.11 to 3.78 on Bunt and Rovira agar supplemented with 0.1% zinc oxide. For the quantitative assay, in broth culture, strains CME34 and EX51 solubilized maximum available zinc contents of 529.71 and 243.58 μg/ml. Furthermore, indole-3-acetic acid (IAA) and ammonia were produced by these two strains, the strain CME34 produced the highest amount of IAA 4.62 μg/ml and the strain EX51 produced the highest amount of ammonia 361.04 μg/ml. In addition, the phosphate-solubilizing abilities in Pikovskaya's medium of CME34 and EX51 were 64.67 and 115.67 μg/ml. Based on morphological and biochemical characterization and 16S rDNA sequencing, the strains CME34 and EX51 were closely related to the genus Streptomyces. In a greenhouse experiment, single-strain inoculation of Streptomyces sp. CME34 or EX51 significantly increased the shoot length, root length, plant dry weight, number of pods per plant and number of seeds per plant of vegetable soybean plants compared to the uninoculated control. These findings facilitated the conclusion that the two Streptomyces strains have potential as zinc solubilizers and can be suggested as bioinoculants to promote the growth and yield of soybean.
Collapse
Affiliation(s)
- Chanwit Suriyachadkun
- Thailand Bioresource Research Center, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Pathum Thani, 12120, Thailand
| | - Orawan Chunhachart
- Division of Microbiology, Department of Science, Faculty of Liberal Arts and Science, Kasetsart University Kamphaeng Saen Campus, Nakorn Pathom, 73140, Thailand
| | - Moltira Srithaworn
- Division of Microbiology, Department of Science, Faculty of Liberal Arts and Science, Kasetsart University Kamphaeng Saen Campus, Nakorn Pathom, 73140, Thailand
| | | | - Janpen Tangjitjareonkun
- Department of Resources and Environment, Faculty of Science at Sriracha, Kasetsart University, Sriracha Campus, Chonburi, 20230, Thailand,Corresponding author Phone: +66-38-352813 Fax: +66-38-354587 E-mail:
| |
Collapse
|
28
|
Moturu US, Nunna T, Avula VG, Jagarlamudi VR, Gutha RR, Tamminana S. Investigating the diversity of bacterial endophytes in maize and their plant growth-promoting attributes. Folia Microbiol (Praha) 2022; 68:369-379. [DOI: 10.1007/s12223-022-01015-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Accepted: 11/03/2022] [Indexed: 11/17/2022]
|
29
|
Suyal DC, Joshi D, Kumar S, Bhatt P, Narayan A, Giri K, Singh M, Soni R, Kumar R, Yadav A, Devi R, Kaur T, Kour D, Yadav AN. Himalayan Microbiomes for Agro-environmental Sustainability: Current Perspectives and Future Challenges. MICROBIAL ECOLOGY 2022; 84:643-675. [PMID: 34647148 DOI: 10.1007/s00248-021-01849-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Accepted: 08/23/2021] [Indexed: 06/13/2023]
Abstract
The Himalayas are one of the most mystical, yet least studied terrains of the world. One of Earth's greatest multifaceted and diverse montane ecosystems is also one of the thirty-four global biodiversity hotspots of the world. These are supposed to have been uplifted about 60-70 million years ago and support, distinct environments, physiography, a variety of orogeny, and great biological diversity (plants, animals, and microbes). Microbes are the pioneer colonizer of the Himalayas that are involved in various bio-geological cycles and play various significant roles. The applications of Himalayan microbiomes inhabiting in lesser to greater Himalayas have been recognized. The researchers explored the applications of indigenous microbiomes in both agricultural and environmental sectors. In agriculture, microbiomes from Himalayan regions have been suggested as better biofertilizers and biopesticides for the crops growing at low temperature and mountainous areas as they help in the alleviation of cold stress and other biotic stresses. Along with alleviation of low temperature, Himalayan microbes also have the capability to enhance plant growth by availing the soluble form of nutrients like nitrogen, phosphorus, potassium, zinc, and iron. These microbes have been recognized for producing plant growth regulators (abscisic acid, auxin, cytokinin, ethylene, and gibberellins). These microbes have been reported for bioremediating the diverse pollutants (pesticides, heavy metals, and xenobiotics) for environmental sustainability. In the current perspectives, present review provides a detailed discussion on the ecology, biodiversity, and adaptive features of the native Himalayan microbiomes in view to achieve agro-environmental sustainability.
Collapse
Affiliation(s)
- Deep Chandra Suyal
- Department of Microbiology, Akal College of Basic Sciences, Eternal University, Sirmaur, Himachal Pradesh, India
| | - Divya Joshi
- Uttarakhand Pollution Control Board, Regional Office, Kashipur, Uttarakhand, India
| | - Saurabh Kumar
- Division of Crop Research, Research Complex for Eastern Region, Patna, Bihar, India
| | - Pankaj Bhatt
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Guangdong Laboratory for Lingnan Modern Agriculture, Integrative Microbiology Research Centre, South China Agricultural University, Guangzhou, 510642, China
| | - Arun Narayan
- Forest Research Institute, Dehradun, 2480 06, India
| | - Krishna Giri
- Rain Forest Research Institute, Jorhat, 785 010, India
| | - Manali Singh
- Department of Biotechnology, Invertis Institute of Engineering and Technology (IIET), Invertis University, Bareilly, 243123, Uttar Pradesh, India
| | - Ravindra Soni
- Department of Agricultural Microbiology, College of Agriculture, Indira Gandhi Krishi Vishwa Vidyalaya, Raipur, Chhattisgarh, India
| | - Rakshak Kumar
- Department of Biotechnology, CSIR-Institute of Himalayan Bioresource Technology, Palampur, India
| | - Ashok Yadav
- Department of Botany, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh, India
| | - Rubee Devi
- Microbial Biotechnology Laboratory, Department of Biotechnology, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmour, Himachal Pradesh, India
| | - Tanvir Kaur
- Microbial Biotechnology Laboratory, Department of Biotechnology, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmour, Himachal Pradesh, India
| | - Divjot Kour
- Microbial Biotechnology Laboratory, Department of Biotechnology, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmour, Himachal Pradesh, India
| | - Ajar Nath Yadav
- Microbial Biotechnology Laboratory, Department of Biotechnology, Dr. Khem Singh Gill Akal College of Agriculture, Eternal University, Baru Sahib, Sirmour, Himachal Pradesh, India.
| |
Collapse
|
30
|
Devi R, Kaur T, Kour D, Yadav AN. Microbial consortium of mineral solubilizing and nitrogen fixing bacteria for plant growth promotion of amaranth (Amaranthus hypochondrius L.). BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2022. [DOI: 10.1016/j.bcab.2022.102404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
31
|
Du E, Chen Y, Li Y, Sun Z, Gui F. Rhizospheric Bacillus-Facilitated Effects on the Growth and Competitive Ability of the Invasive Plant Ageratina adenophora. FRONTIERS IN PLANT SCIENCE 2022; 13:882255. [PMID: 35774817 PMCID: PMC9237563 DOI: 10.3389/fpls.2022.882255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Accepted: 04/27/2022] [Indexed: 06/15/2023]
Abstract
The rhizospheric microbial community affects the population establishment of invasive plants in introduced areas, among which Bacillus has numerous functions in promoting plant growth. This study isolated and enriched the Bacillus community in the rhizospheric soil of the invasive plant Ageratina adenophora and the native accompanying plant Rabdosia amethystoides. The effects of these rhizospheric Bacillus communities on the growth and competition of A. adenophora and R. amethystoides were evaluated in pot experiments. The results showed that the number and diversity of Bacillus in the rhizospheric soil of A. adenophora were higher than those of R. amethystoides (A. adenophora: 122 strains in soil, 16 Bacillus taxa; R. amethystoides: 88 strains in soil, 9 Bacillus taxa). After Bacillus inoculation of A. adenophora in a pot experiment, Bacillus idriensis, Bacillus toyonensis and Bacillus cereus were accumulated in the rhizospheric of A. adenophora, which significantly increased the nitrate nitrogen (NO3 --N) content in the soil and the total carbon and nitrogen concentrations in A. adenophora in the mixed treatment. The selective accumulation of Bacillus enhanced the competitive advantage of A. adenophora over the native accompanying plant; the corrected index of relative competition intensity of A. adenophora-inoculated Bacillus reached double that of the uninoculated treatment, and the growth of native plants was greatly suppressed under mixed planting. Our study confirmed that invasion of A. adenophora can lead to the accumulation of specific Bacillus taxa in the rhizospheric soil, which in turn can increase the competitive advantage of A. adenophora.
Collapse
Affiliation(s)
- Ewei Du
- State Key Laboratory for Conservation and Utilization of Bioresources in Yunnan, College of Plant Protection, Yunnan Agricultural University, Kunming, China
| | - Yaping Chen
- State Key Laboratory for Conservation and Utilization of Bioresources in Yunnan, College of Plant Protection, Yunnan Agricultural University, Kunming, China
| | - Yahong Li
- Yunnan Plant Protection and Quarantine Station, Kunming, China
| | - Zhongxiang Sun
- State Key Laboratory for Conservation and Utilization of Bioresources in Yunnan, College of Plant Protection, Yunnan Agricultural University, Kunming, China
| | - Furong Gui
- State Key Laboratory for Conservation and Utilization of Bioresources in Yunnan, College of Plant Protection, Yunnan Agricultural University, Kunming, China
| |
Collapse
|
32
|
Abstract
The findings on the strategies employed by endophytic microbes have provided salient information to the researchers on the need to maximally explore them as bio-input in agricultural biotechnology. Biotic and abiotic factors are known to influence microbial recruitments from external plant environments into plant tissues. Endophytic microbes exhibit mutualism or antagonism association with host plants. The beneficial types contribute to plant growth and soil health, directly or indirectly. Strategies to enhance the use of endophytic microbes are desirable in modern agriculture, such that these microbes can be applied individually or combined as bioinoculants with bioprospecting in crop breeding systems. Scant information is available on the strategies for shaping the endophytic microbiome; hence, the need to unravel microbial strategies for yield enhancement and pathogen suppressiveness have become imperative. Therefore, this review focuses on the endophytic microbiome, mechanisms, factors influencing endophyte recruitment, and strategies for possible exploration as bioinoculants.
Collapse
|
33
|
Potential applications of mineral solubilizing rhizospheric and nitrogen fixing endophytic bacteria as microbial consortium for the growth promotion of chilli (Capsicum annum L.). Biologia (Bratisl) 2022. [DOI: 10.1007/s11756-022-01127-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
|
34
|
Singh D, Thapa S, Mahawar H, Kumar D, Geat N, Singh SK. Prospecting potential of endophytes for modulation of biosynthesis of therapeutic bioactive secondary metabolites and plant growth promotion of medicinal and aromatic plants. Antonie van Leeuwenhoek 2022; 115:699-730. [PMID: 35460457 DOI: 10.1007/s10482-022-01736-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2021] [Accepted: 03/26/2022] [Indexed: 01/13/2023]
Abstract
Medicinal and aromatic plants possess pharmacological properties (antidiabetes, anticancer, antihypertension, anticardiovascular, antileprosy, etc.) because of their potential to synthesize a wide range of therapeutic bioactive secondary metabolites. The concentration of bioactive secondry metabolites depends on plant species, local environment, soil type and internal microbiome. The internal microbiome of medicinal plants plays the crucial role in the production of bioactive secondary metabolites, namely alkaloids, steroids, terpenoids, peptides, polyketones, flavonoids, quinols and phenols. In this review, the host specific secondry metabolites produced by endophytes, their therapeutic properties and host-endophytes interaction in relation to production of bioactive secondry metaboloites and the role of endophytes in enhancing the production of bioactive secondry metabolites is discussed. How biological nitrogen fixation, phosphorus solubilization, micronutrient uptake, phytohormone production, disease suppression, etc. can play a vital role in enhacing the plant growth and development.The role of endophytes in enhancing the plant growth and content of bioactive secondary metabolites in medicinal and aromatic plants in a sustainable mode is highlighted.
Collapse
Affiliation(s)
- Devendra Singh
- ICAR-Central Arid Zone Research Institute, Jodhpur, Rajasthan, 342003, India.
| | - Shobit Thapa
- ICAR-National Bureau of Agriculturally Important Microorganisms, Kushmaur, Mau Nath Bhanjan, Uttar Pradesh, 275103, India
| | - Himanshu Mahawar
- ICAR-Directorate of Weed Research (DWR), Maharajpur, Jabalpur, Madhya Pradesh, 482004, India
| | - Dharmendra Kumar
- ICAR- Central Potato Research Institute, Shimla, Himachal Pradesh, 171001, India
| | - Neelam Geat
- Agricultural Research Station, Agriculture University, Jodhpur, Rajasthan, 342304, India
| | - S K Singh
- ICAR-Central Arid Zone Research Institute, Jodhpur, Rajasthan, 342003, India
| |
Collapse
|
35
|
Styczynski M, Biegniewski G, Decewicz P, Rewerski B, Debiec-Andrzejewska K, Dziewit L. Application of Psychrotolerant Antarctic Bacteria and Their Metabolites as Efficient Plant Growth Promoting Agents. Front Bioeng Biotechnol 2022; 10:772891. [PMID: 35284420 PMCID: PMC8907978 DOI: 10.3389/fbioe.2022.772891] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Accepted: 02/07/2022] [Indexed: 01/04/2023] Open
Abstract
Iron is the fourth most abundant element on earth. However, its low bioavailability is a key plant-growth limiting factor. Bacteria play an important role in plant growth promotion since they produce specific secondary metabolites that may increase macro- and micronutrient accessibility in soil. Therefore, bacterial-derived iron chelators, as well as surface-active compounds, are recognised as essential to plant welfare. In this study, three cold-active Antarctic bacterial strains, i.e. Pseudomonas sp. ANT_H12B, Psychrobacter sp. ANT_H59 and Bacillus sp. ANT_WA51, were analysed. The physiological and genomic characterisation of these strains revealed their potential for plant growth promotion, reflected in the production of various biomolecules, including biosurfactants (that may lower the medium surface tension of even up to 53%) and siderophores (including ANT_H12B-produced mixed-type siderophore that demonstrated the highest production, reaching the concentration of up to 1.065 mM), increasing the availability of nutrients in the environment and neutralising fungal pathogens. Tested bacteria demonstrated an ability to promote the growth of a model plant, alfalfa, increasing shoots’ length and fresh biomass even up to 26 and 46% respectively; while their metabolites increased the bioavailability of iron in soil up to 40%. It was also revealed that the introduced strains did not disrupt physicochemical conditions and indigenous soil microbial composition, which suggests that they are promising amendments preserving the natural biodiversity of soil and increasing its fertility.
Collapse
Affiliation(s)
- Michal Styczynski
- Institute of Microbiology, Department of Environmental Microbiology and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland
| | - Gabriel Biegniewski
- Institute of Microbiology, Department of Environmental Microbiology and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland
| | - Przemyslaw Decewicz
- Institute of Microbiology, Department of Environmental Microbiology and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland
| | - Bartosz Rewerski
- Institute of Microbiology, Department of Geomicrobiology, Faculty of Biology, University of Warsaw, Warsaw, Poland
| | - Klaudia Debiec-Andrzejewska
- Institute of Microbiology, Department of Environmental Microbiology and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland
| | - Lukasz Dziewit
- Institute of Microbiology, Department of Environmental Microbiology and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland
- *Correspondence: Lukasz Dziewit,
| |
Collapse
|
36
|
Benaffari W, Boutasknit A, Anli M, Ait-El-Mokhtar M, Ait-Rahou Y, Ben-Laouane R, Ben Ahmed H, Mitsui T, Baslam M, Meddich A. The Native Arbuscular Mycorrhizal Fungi and Vermicompost-Based Organic Amendments Enhance Soil Fertility, Growth Performance, and the Drought Stress Tolerance of Quinoa. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11030393. [PMID: 35161374 PMCID: PMC8838481 DOI: 10.3390/plants11030393] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Revised: 01/27/2022] [Accepted: 01/27/2022] [Indexed: 05/17/2023]
Abstract
The present study aimed to determine the effects of biostimulants on the physicochemical parameters of the agricultural soil of quinoa under two water regimes and to understand the mode of action of the biostimulants on quinoa for drought adaptation. We investigated the impact of two doses of vermicompost (5 and 10 t/ha) and arbuscular mycorrhizal fungi applied individually, or in joint application, on attenuating the negative impacts of water shortage and improving the agro-physiological and biochemical traits of quinoa, as well as soil fertility, under two water regimes (well-watered and drought stress) in open field conditions. Exposure to drought decreased biomass, leaf water potential, and stomatal conductance, and increased malondialdehyde and hydrogen peroxide content. Mycorrhiza and/or vermicompost promoted plant growth by activating photosynthesis machinery and nutrient assimilation, leading to increased total soluble sugars, proteins, and antioxidant enzyme activities in the leaf and root. After the experiment, the soil's total organic matter, phosphorus, nitrogen, calcium, and soil glomalin content improved by the single or combined application of mycorrhiza and vermicompost. This knowledge suggests that the combination of mycorrhiza and vermicompost regulates the physiological and biochemical processes employed by quinoa in coping with drought and improves the understanding of soil-plant interaction.
Collapse
Affiliation(s)
- Wissal Benaffari
- Center of Agrobiotechnology and Bioengineering, Research Unit labelled CNRST (Centre AgroBiotech-URL-CNRST-05), “Physiology of Abiotic Stresses” Team, Cadi Ayyad University, Marrakesh 40000, Morocco; (W.B.); (A.B.); (M.A.); (Y.A.-R.); (R.B.-L.)
- Laboratory of Agro-Food, Biotechnologies and Valorization of Plant Bioresources (AGROBIOVAL), Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco;
- Laboratoire Mixte Tuniso-Marocain (LMTM) de Physiologie et Biotechnologie Végétales et Changements Climatiques LPBV2C, Tunis 1000, Tunisia;
| | - Abderrahim Boutasknit
- Center of Agrobiotechnology and Bioengineering, Research Unit labelled CNRST (Centre AgroBiotech-URL-CNRST-05), “Physiology of Abiotic Stresses” Team, Cadi Ayyad University, Marrakesh 40000, Morocco; (W.B.); (A.B.); (M.A.); (Y.A.-R.); (R.B.-L.)
- Laboratory of Agro-Food, Biotechnologies and Valorization of Plant Bioresources (AGROBIOVAL), Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco;
- Laboratoire Mixte Tuniso-Marocain (LMTM) de Physiologie et Biotechnologie Végétales et Changements Climatiques LPBV2C, Tunis 1000, Tunisia;
| | - Mohamed Anli
- Center of Agrobiotechnology and Bioengineering, Research Unit labelled CNRST (Centre AgroBiotech-URL-CNRST-05), “Physiology of Abiotic Stresses” Team, Cadi Ayyad University, Marrakesh 40000, Morocco; (W.B.); (A.B.); (M.A.); (Y.A.-R.); (R.B.-L.)
- Laboratory of Agro-Food, Biotechnologies and Valorization of Plant Bioresources (AGROBIOVAL), Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco;
- Laboratoire Mixte Tuniso-Marocain (LMTM) de Physiologie et Biotechnologie Végétales et Changements Climatiques LPBV2C, Tunis 1000, Tunisia;
| | - Mohamed Ait-El-Mokhtar
- Laboratory of Agro-Food, Biotechnologies and Valorization of Plant Bioresources (AGROBIOVAL), Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco;
| | - Youssef Ait-Rahou
- Center of Agrobiotechnology and Bioengineering, Research Unit labelled CNRST (Centre AgroBiotech-URL-CNRST-05), “Physiology of Abiotic Stresses” Team, Cadi Ayyad University, Marrakesh 40000, Morocco; (W.B.); (A.B.); (M.A.); (Y.A.-R.); (R.B.-L.)
| | - Raja Ben-Laouane
- Center of Agrobiotechnology and Bioengineering, Research Unit labelled CNRST (Centre AgroBiotech-URL-CNRST-05), “Physiology of Abiotic Stresses” Team, Cadi Ayyad University, Marrakesh 40000, Morocco; (W.B.); (A.B.); (M.A.); (Y.A.-R.); (R.B.-L.)
- Laboratory of Agro-Food, Biotechnologies and Valorization of Plant Bioresources (AGROBIOVAL), Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco;
| | - Hela Ben Ahmed
- Laboratoire Mixte Tuniso-Marocain (LMTM) de Physiologie et Biotechnologie Végétales et Changements Climatiques LPBV2C, Tunis 1000, Tunisia;
| | - Toshiaki Mitsui
- Laboratory of Biochemistry, Faculty of Agriculture, Niigata University, Niigata 950-2181, Japan;
| | - Marouane Baslam
- Laboratory of Biochemistry, Faculty of Agriculture, Niigata University, Niigata 950-2181, Japan;
- Correspondence: (M.B.); (A.M.); Tel.: +81-252627637 (M.B.); +212-661873158 (A.M.)
| | - Abdelilah Meddich
- Center of Agrobiotechnology and Bioengineering, Research Unit labelled CNRST (Centre AgroBiotech-URL-CNRST-05), “Physiology of Abiotic Stresses” Team, Cadi Ayyad University, Marrakesh 40000, Morocco; (W.B.); (A.B.); (M.A.); (Y.A.-R.); (R.B.-L.)
- Laboratory of Agro-Food, Biotechnologies and Valorization of Plant Bioresources (AGROBIOVAL), Faculty of Science Semlalia, Cadi Ayyad University, Marrakesh 40000, Morocco;
- Laboratoire Mixte Tuniso-Marocain (LMTM) de Physiologie et Biotechnologie Végétales et Changements Climatiques LPBV2C, Tunis 1000, Tunisia;
- Correspondence: (M.B.); (A.M.); Tel.: +81-252627637 (M.B.); +212-661873158 (A.M.)
| |
Collapse
|
37
|
Rizvi A, Ahmed B, Khan MS, Umar S, Lee J. Psychrophilic Bacterial Phosphate-Biofertilizers: A Novel Extremophile for Sustainable Crop Production under Cold Environment. Microorganisms 2021; 9:2451. [PMID: 34946053 PMCID: PMC8704983 DOI: 10.3390/microorganisms9122451] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Revised: 11/23/2021] [Accepted: 11/24/2021] [Indexed: 11/18/2022] Open
Abstract
Abiotic stresses, including low-temperature environments, adversely affect the structure, composition, and physiological activities of soil microbiomes. Also, low temperatures disturb physiological and metabolic processes, leading to major crop losses worldwide. Extreme cold temperature habitats are, however, an interesting source of psychrophilic and psychrotolerant phosphate solubilizing bacteria (PSB) that can ameliorate the low-temperature conditions while maintaining their physiological activities. The production of antifreeze proteins and expression of stress-induced genes at low temperatures favors the survival of such organisms during cold stress. The ability to facilitate plant growth by supplying a major plant nutrient, phosphorus, in P-deficient soil is one of the novel functional properties of cold-tolerant PSB. By contrast, plants growing under stress conditions require cold-tolerant rhizosphere bacteria to enhance their performance. To this end, the use of psychrophilic PSB formulations has been found effective in yield optimization under temperature-stressed conditions. Most of the research has been done on microbial P biofertilizers impacting plant growth under normal cultivation practices but little attention has been paid to the plant growth-promoting activities of cold-tolerant PSB on crops growing in low-temperature environments. This scientific gap formed the basis of the present manuscript and explains the rationale for the introduction of cold-tolerant PSB in competitive agronomic practices, including the mechanism of solubilization/mineralization, release of biosensor active biomolecules, molecular engineering of PSB for increasing both P solubilizing/mineralizing efficiency, and host range. The impact of extreme cold on the physiological activities of plants and how plants overcome such stresses is discussed briefly. It is time to enlarge the prospects of psychrophilic/psychrotolerant phosphate biofertilizers and take advantage of their precious, fundamental, and economical but enormous plant growth augmenting potential to ameliorate stress and facilitate crop production to satisfy the food demands of frighteningly growing human populations. The production and application of cold-tolerant P-biofertilizers will recuperate sustainable agriculture in cold adaptive agrosystems.
Collapse
Affiliation(s)
- Asfa Rizvi
- Department of Botany, School of Chemical and Life Sciences, Jamia Hamdard, Hamdard Nagar, New Delhi 110062, India; (A.R.); (S.U.)
| | - Bilal Ahmed
- School of Chemical Engineering, Yeungnam University, Gyeongsan 38541, Korea
| | - Mohammad Saghir Khan
- Department of Agricultural Microbiology, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh 202002, India;
| | - Shahid Umar
- Department of Botany, School of Chemical and Life Sciences, Jamia Hamdard, Hamdard Nagar, New Delhi 110062, India; (A.R.); (S.U.)
| | - Jintae Lee
- School of Chemical Engineering, Yeungnam University, Gyeongsan 38541, Korea
| |
Collapse
|
38
|
Francioli D, Cid G, Kanukollu S, Ulrich A, Hajirezaei MR, Kolb S. Flooding Causes Dramatic Compositional Shifts and Depletion of Putative Beneficial Bacteria on the Spring Wheat Microbiota. Front Microbiol 2021; 12:773116. [PMID: 34803993 PMCID: PMC8602104 DOI: 10.3389/fmicb.2021.773116] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Accepted: 10/13/2021] [Indexed: 01/04/2023] Open
Abstract
Flooding affects both above- and below-ground ecosystem processes, and it represents a substantial threat for crop and cereal productivity under climate change. Plant-associated microbiota play a crucial role in plant growth and fitness, but we still have a limited understanding of the response of the crop-microbiota complex under extreme weather events, such as flooding. Soil microbes are highly sensitive to abiotic disturbance, and shifts in microbial community composition, structure and functions are expected when soil conditions are altered due to flooding events (e.g., anoxia, pH alteration, changes in nutrient concentration). Here, we established a pot experiment to determine the effects of flooding stress on the spring wheat-microbiota complex. Since plant phenology could be an important factor in the response to hydrological stress, flooding was induced only once and at different plant growth stages (PGSs), such as tillering, booting and flowering. After each flooding event, we measured in the control and flooded pots several edaphic and plant properties and characterized the bacterial community associated to the rhizosphere and roots of wheat plant using a metabarcoding approach. In our study, flooding caused a significant reduction in plant development and we observed dramatic shifts in bacterial community composition at each PGS in which the hydrological stress was induced. However, a more pronounced disruption in community assembly was always shown in younger plants. Generally, flooding caused a (i) significant increase of bacterial taxa with anaerobic respiratory capabilities, such as members of Firmicutes and Desulfobacterota, (ii) a significant reduction in Actinobacteria and Proteobacteria, (iii) depletion of several putative plant-beneficial taxa, and (iv) increases of the abundance of potential detrimental bacteria. These significant differences in community composition between flooded and control samples were correlated with changes in soil conditions and plant properties caused by the hydrological stress, with pH and total N as the soil, and S, Na, Mn, and Ca concentrations as the root properties most influencing microbial assemblage in the wheat mircobiota under flooding stress. Collectively, our findings demonstrated the role of flooding on restructuring the spring wheat microbiota, and highlighted the detrimental effect of this hydrological stress on plant fitness and performance.
Collapse
Affiliation(s)
- Davide Francioli
- Microbial Biogeochemistry, Research Area Landscape Functioning, Leibniz Center for Agricultural Landscape Research e.V. (ZALF), Müncheberg, Germany
| | - Geeisy Cid
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Saranya Kanukollu
- Microbial Biogeochemistry, Research Area Landscape Functioning, Leibniz Center for Agricultural Landscape Research e.V. (ZALF), Müncheberg, Germany
| | - Andreas Ulrich
- Microbial Biogeochemistry, Research Area Landscape Functioning, Leibniz Center for Agricultural Landscape Research e.V. (ZALF), Müncheberg, Germany
| | - Mohammad-Reza Hajirezaei
- Department of Physiology and Cell Biology, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
| | - Steffen Kolb
- Microbial Biogeochemistry, Research Area Landscape Functioning, Leibniz Center for Agricultural Landscape Research e.V. (ZALF), Müncheberg, Germany.,Faculty of Life Sciences, Thaer Institute, Humboldt University of Berlin, Berlin, Germany
| |
Collapse
|
39
|
Ahlawat OP, Yadav D, Kashyap PL, Khippal A, Singh G. Wheat endophytes and their potential role in managing abiotic stress under changing climate. J Appl Microbiol 2021; 132:2501-2520. [PMID: 34800309 DOI: 10.1111/jam.15375] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2021] [Revised: 10/23/2021] [Accepted: 11/16/2021] [Indexed: 11/30/2022]
Abstract
Wheat (Triticum aestivum L.) cultivation differs considerably in respect of soil type, temperature, pH, organic matter, moisture regime, etc. Among these, rising atmospheric temperature due to global warming is most important as it affects grain yield drastically. Studies have shown that for every 1°C rise in temperature above wheat's optimal growing temperature range of 20-25°C, there is a decrease in 2.8 days and 1.5 mg in the grain filling period and kernel weight, respectively, resulting in wheat yield reduction by 4-6 quintal per hectare. Growing demand for food and multidimensional issues of global warming may further push wheat crop to heat stress environments that can substantially affect heading duration, percent grain setting, maturity duration, grain growth rate and ultimately total grain yield. Considerable genetic variation exists in wheat gene pool with respect to various attributes associated with high temperature and stress tolerance; however, only about 15% of the genetic variability could be incorporated into cultivated wheat so far. Thus, alternative strategies have to be explored and implemented for sustainable, more productive and environment friendly agriculture. One of the feasible and environment friendly option is to look at micro-organisms that reside inside the plant without adversely affecting its growth, known as 'endophytes', and these colonize virtually all plant organs such as roots, stems, leaves, flowers and grains. The relationship between plant and endophytes is vital to the plant health, productivity and overall survival under abiotic stress conditions. Thus, it becomes imperative to enlist the endophytes (bacterial and fungal) isolated till date from wheat cultivars, their mechanism of ingression and establishment inside plant organs, genes involved in ingression, the survival advantages they confer to the plant under abiotic stress conditions and the potential benefits of their use in sustainable wheat cultivation.
Collapse
Affiliation(s)
| | - Dhinu Yadav
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, India
| | - Prem Lal Kashyap
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, India
| | - Anil Khippal
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, India
| | - Gyanendra Singh
- ICAR-Indian Institute of Wheat and Barley Research, Karnal, India
| |
Collapse
|
40
|
Streptomyces sp. S-9 promotes plant growth and confers resistance in Pigeon pea ( Cajanus cajan) against Fusarium wilt. 3 Biotech 2021; 11:459. [PMID: 34692368 DOI: 10.1007/s13205-021-02989-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Accepted: 09/07/2021] [Indexed: 10/20/2022] Open
Abstract
Streptomyces sp. strain S-9 was studied for its effect in inducing systemic resistance in Pigeon pea against the plant pathogen Fusarium udum causing wilt. The 16S rRNA gene sequencing and phylogenetic analysis indicated that S-9 is closely related to genus Streptomyces for which it was referred to as Streptomyces sp. S-9. Streptomyces sp. S-9 caused 85% inhibition of the pathogen and showed various attributes of plant growth-promoting such as the production of IAA, P-solubilization, and β -1, 3-Glucanase activity. Proline and malondialdehyde (MDA) content was significantly higher whereas the chlorophyll content decreased in the pathogen-infected plant when compared to S-9 treated Pigeon pea plants. The anatomical research assisted the biocontrol-mediated stress tolerance findings in the Pigeon pea plant through increased root epidermis and enhanced stress-related xylem tissues. Fungus inoculation elevated the antioxidative enzymatic activities of superoxide dismutase (SOD; 78%) and catalase (CAT; 56%). Marked reductions in antioxidant enzymes were associated with the antagonistic effects of the different treatments. Conclusions showed that S-9 bioinocula applied as a seed coating enhanced soil availability of nitrogen (N), phosphate (P), and potassium (K), indicating their suitability for direct application invigorating plant growth and persuade resistance in the plant Pigeon pea against Fusarium wilt. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s13205-021-02989-0.
Collapse
|
41
|
Hazarika SN, Saikia K, Borah A, Thakur D. Prospecting Endophytic Bacteria Endowed With Plant Growth Promoting Potential Isolated From Camellia sinensis. Front Microbiol 2021; 12:738058. [PMID: 34659169 PMCID: PMC8515050 DOI: 10.3389/fmicb.2021.738058] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Accepted: 08/20/2021] [Indexed: 01/11/2023] Open
Abstract
Endophytes are well-acknowledged inoculants to promote plant growth, and extensive research has been done in different plants. However, there is a lacuna about the endophytes associated with tea clones and their benefit to promote plant growth. The present study focuses on isolating and characterizing the beneficial endophytic bacteria (EnB) prevalent in commercially important tea clones cultivated in North Eastern India as plant growth promoters. Diversity of culturable EnB microbiome, in vitro traits for plant growth promotion (PGP), and applicability of potent isolates as bioinoculant for in vivo PGP abilities have been assessed in the present study. A total of 106 EnB identified as members of phyla Proteobacteria, Firmicutes, and Actinobacteria were related to 22 different genera and six major clusters. Regarding PGP traits, the percentage of isolates positive for the production of indole acetic acid, phosphate solubilization, nitrogen fixation siderophore, ammonia, and 1-aminocyclopropane-1-carboxylic acid deaminase production were 86.8, 28.3, 78.3, 30.2, 95.3, and 87.7, respectively. In total, 34.0, 52.8, and 17.0% of EnB showed notable production of hydrolytic enzymes like cellulase, protease, and amylase, respectively. Additionally, based on the bonitur score, the top two isolates K96 identified as Stenotrophomonas sp. and M45 identified as Pseudomonas sp. were evaluated for biofilm formation, motility, and in vivo plant growth promoting activity. Results suggested strong biofilm formation and motility in K96 and M45 which may attribute to the colonization of the strains in the plants. Further in vivo plant growth promotion experiment suggested sturdy efficacy of the K96 and M45 as plant growth promoters in nursery condition in commercial tea clones Tocklai vegetative (TV) TV22 and TV26. Thus, this study emphasizes the opportunity of commercialization of the selected isolates for sustainable development of tea and other crops.
Collapse
Affiliation(s)
- Shabiha Nudrat Hazarika
- Microbial Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology, Guwahati, India.,Department of Molecular Biology and Biotechnology, Cotton University, Guwahati, India
| | - Kangkon Saikia
- Microbial Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology, Guwahati, India
| | - Atlanta Borah
- Microbial Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology, Guwahati, India
| | - Debajit Thakur
- Microbial Biotechnology Laboratory, Life Sciences Division, Institute of Advanced Study in Science and Technology, Guwahati, India
| |
Collapse
|
42
|
Potential of pink pigmented methylotrophic bacteria on growth and physiology of cluster bean and soil microbial community. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2021. [DOI: 10.1016/j.bcab.2021.102161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
43
|
Yasmin R, Hussain S, Rasool MH, Siddique MH, Muzammil S. Isolation, Characterization of Zn Solubilizing Bacterium ( Pseudomonas protegens RY2) and its Contribution in Growth of Chickpea ( Cicer arietinum L) as Deciphered by Improved Growth Parameters and Zn Content. Dose Response 2021; 19:15593258211036791. [PMID: 34421440 PMCID: PMC8375356 DOI: 10.1177/15593258211036791] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Revised: 06/30/2021] [Accepted: 07/13/2021] [Indexed: 11/17/2022] Open
Abstract
Background: Zinc is an essential micronutrient required for optimum plant growth. Zinc-solubilizing bacteria convert applied inorganic zinc to available forms that could be used by plants. Research design: In present study, experiments were conducted to isolate, characterize, and evaluate Zn solubilization potential of different bacteria. Results: Among 10 isolated strains, Pseudomonas protegens (RY2, MF351762) was found to be the most promising strain having zinc-solubilizing potential on 4 different insoluble zinc sources. In quantitative assay, Zn solubilization by RY2 was significantly higher than other strains at different incubation time. P. protegens RY2 was selected (based on zinc solubilizing and plant growth promoting activities like P solubilization and ACC deaminase) for plant experiments. Meanwhile, available Zn release rate in soil was determined at day 10 of incubation. Chickpea seeds were inoculated with RY2 strain and ZnO is used as zinc source. Growth parameters and quantifying zinc content of shoot and root using atomic absorption spectrophotometer were determined. Enhanced shoot and root dry weights and lengths were observed in chickpea plants compared to control. Maximum increase of 44%, 67%, and 75% in T2 (Soil + RY2), T5 (Soil + ZnO + RY2), and T7 (Soil + manure + ZnO + RY2), respectively, was found in shoot length compared to control (T1). Conclusion: The study indicated that zinc-solubilizing RY2 strain possesses potential for enhanced Zn in soil so it would allow reduced inorganic Zn application.
Collapse
Affiliation(s)
- Riffat Yasmin
- Department of Microbiology, Government College University Faisalabad, Faisalabad, Pakistan
| | - Sabir Hussain
- Department of Environmental Sciences and Engineering, Government College University Faisalabad, Faisalabad, Pakistan
| | | | - Muhammad Hussnain Siddique
- Department of Bioinformatics and Biotechnology, Government College University Faisalabad, Faisalabad, Pakistan
| | - Saima Muzammil
- Department of Microbiology, Government College University Faisalabad, Faisalabad, Pakistan
| |
Collapse
|
44
|
Breitkreuz C, Reitz T, Schulz E, Tarkka MT. Drought and Plant Community Composition Affect the Metabolic and Genotypic Diversity of Pseudomonas Strains in Grassland Soils. Microorganisms 2021; 9:microorganisms9081677. [PMID: 34442756 PMCID: PMC8399733 DOI: 10.3390/microorganisms9081677] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Revised: 07/30/2021] [Accepted: 08/04/2021] [Indexed: 12/23/2022] Open
Abstract
Climate and plant community composition (PCC) modulate the structure and function of microbial communities. In order to characterize how the functional traits of bacteria are affected, important plant growth-promoting rhizobacteria of grassland soil communities, pseudomonads, were isolated from a grassland experiment and phylogenetically and functionally characterized. The Miniplot experiment was implemented to examine the mechanisms underlying grassland ecosystem changes due to climate change, and it investigates the sole or combined impact of drought and PCC (plant species with their main distribution either in SW or NE Europe, and a mixture of these species). We observed that the proportion and phylogenetic composition of nutrient-releasing populations of the Pseudomonas community are affected by prolonged drought periods, and to a minor extent by changes in plant community composition, and that these changes underlie seasonality effects. Our data also partly showed concordance between the metabolic activities and 16S phylogeny. The drought-induced shifts in functional Pseudomonas community traits, phosphate and potassium solubilization and siderophore production did not follow a unique pattern. Whereas decreased soil moisture induced a highly active phosphate-solubilizing community, the siderophore-producing community showed the opposite response. In spite of this, no effect on potassium solubilization was detected. These results suggest that the Pseudomonas community quickly responds to drought in terms of structure and function, the direction of the functional response is trait-specific, and the extent of the response is affected by plant community composition.
Collapse
Affiliation(s)
- Claudia Breitkreuz
- Department of Soil Ecology, Helmholtz Centre for Environmental Research GmbH-UFZ, Theodor-Lieser-Str. 4, 06120 Halle, Germany; (T.R.); (E.S.); (M.T.T.)
- Correspondence: ; Tel.: +49-345-558-5416
| | - Thomas Reitz
- Department of Soil Ecology, Helmholtz Centre for Environmental Research GmbH-UFZ, Theodor-Lieser-Str. 4, 06120 Halle, Germany; (T.R.); (E.S.); (M.T.T.)
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, 04103 Leipzig, Germany
| | - Elke Schulz
- Department of Soil Ecology, Helmholtz Centre for Environmental Research GmbH-UFZ, Theodor-Lieser-Str. 4, 06120 Halle, Germany; (T.R.); (E.S.); (M.T.T.)
| | - Mika Tapio Tarkka
- Department of Soil Ecology, Helmholtz Centre for Environmental Research GmbH-UFZ, Theodor-Lieser-Str. 4, 06120 Halle, Germany; (T.R.); (E.S.); (M.T.T.)
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, 04103 Leipzig, Germany
| |
Collapse
|
45
|
Plant growth promoting soil microbiomes and their potential implications for agricultural and environmental sustainability. Biologia (Bratisl) 2021. [DOI: 10.1007/s11756-021-00806-w] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
46
|
Alemneh AA, Cawthray GR, Zhou Y, Ryder MH, Denton MD. Ability to produce indole acetic acid is associated with improved phosphate solubilising activity of rhizobacteria. Arch Microbiol 2021; 203:3825-3837. [PMID: 33997908 DOI: 10.1007/s00203-021-02364-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Revised: 04/28/2021] [Accepted: 05/07/2021] [Indexed: 10/21/2022]
Abstract
Indole acetic acid (IAA) can upregulate genes encoding enzymes responsible for the synthesis of carboxylates involved in phosphorus (P) solubilisation. Here, we investigated whether IAA and its precursor affect the P-solubilising activity of rhizobacteria. A total of 841 rhizobacteria were obtained using taxonomically selective and enrichment isolation methods. Phylogenetic analysis revealed 15 genera of phosphate solubilising bacteria (PSB) capable of producing a wide range of IAA concentrations between 4.1 and 67.2 µg mL-1 in vitro. Addition of L-tryptophan to growth media improved the P-solubilising activity of PSB that were able to produce IAA greater than 20 µg mL-1. This effect was connected to the drop of pH and release of a high concentration of carboxylates, comprising α-ketoglutarate, cis-aconitate, citrate, malate and succinate. An increase in production of organic acids rather than IAA production per se appears to result in the improved P solubilisation in PSB.
Collapse
Affiliation(s)
- Anteneh Argaw Alemneh
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, SA, 5064, Australia.,China-Australia Joint Laboratory for Soil Ecological Health and Remediation, The University of Adelaide, Glen Osmond, SA, 5064, Australia
| | - Gregory R Cawthray
- School of Biological Sciences, The University of Western Australia, 35 Stirling Hwy, Crawley, Perth, WA, 6009, Australia
| | - Yi Zhou
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, SA, 5064, Australia. .,China-Australia Joint Laboratory for Soil Ecological Health and Remediation, The University of Adelaide, Glen Osmond, SA, 5064, Australia.
| | - Maarten H Ryder
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, SA, 5064, Australia.,China-Australia Joint Laboratory for Soil Ecological Health and Remediation, The University of Adelaide, Glen Osmond, SA, 5064, Australia
| | - Matthew D Denton
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, SA, 5064, Australia.,China-Australia Joint Laboratory for Soil Ecological Health and Remediation, The University of Adelaide, Glen Osmond, SA, 5064, Australia
| |
Collapse
|
47
|
Eid AM, Fouda A, Abdel-Rahman MA, Salem SS, Elsaied A, Oelmüller R, Hijri M, Bhowmik A, Elkelish A, Hassan SED. Harnessing Bacterial Endophytes for Promotion of Plant Growth and Biotechnological Applications: An Overview. PLANTS (BASEL, SWITZERLAND) 2021; 10:935. [PMID: 34067154 PMCID: PMC8151188 DOI: 10.3390/plants10050935] [Citation(s) in RCA: 61] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Revised: 04/29/2021] [Accepted: 05/03/2021] [Indexed: 12/19/2022]
Abstract
Endophytic bacteria colonize plants and live inside them for part of or throughout their life without causing any harm or disease to their hosts. The symbiotic relationship improves the physiology, fitness, and metabolite profile of the plants, while the plants provide food and shelter for the bacteria. The bacteria-induced alterations of the plants offer many possibilities for biotechnological, medicinal, and agricultural applications. The endophytes promote plant growth and fitness through the production of phytohormones or biofertilizers, or by alleviating abiotic and biotic stress tolerance. Strengthening of the plant immune system and suppression of disease are associated with the production of novel antibiotics, secondary metabolites, siderophores, and fertilizers such as nitrogenous or other industrially interesting chemical compounds. Endophytic bacteria can be used for phytoremediation of environmental pollutants or the control of fungal diseases by the production of lytic enzymes such as chitinases and cellulases, and their huge host range allows a broad spectrum of applications to agriculturally and pharmaceutically interesting plant species. More recently, endophytic bacteria have also been used to produce nanoparticles for medical and industrial applications. This review highlights the biotechnological possibilities for bacterial endophyte applications and proposes future goals for their application.
Collapse
Affiliation(s)
- Ahmed M. Eid
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (A.M.E.); (M.A.A.-R.); (S.S.S.); (A.E.)
| | - Amr Fouda
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (A.M.E.); (M.A.A.-R.); (S.S.S.); (A.E.)
| | - Mohamed Ali Abdel-Rahman
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (A.M.E.); (M.A.A.-R.); (S.S.S.); (A.E.)
| | - Salem S. Salem
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (A.M.E.); (M.A.A.-R.); (S.S.S.); (A.E.)
| | - Albaraa Elsaied
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (A.M.E.); (M.A.A.-R.); (S.S.S.); (A.E.)
| | - Ralf Oelmüller
- Department of Plant Physiology, Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich-Schiller-University, 07743 Jena, Germany; (R.O.); (A.E.)
| | - Mohamed Hijri
- Biodiversity Centre, Institut de Recherche en Biologie Végétale, Université de Montréal and Jardin botanique de Montréal, Montréal, QC 22001, Canada;
- African Genome Center, Mohammed VI Polytechnic University (UM6P), 43150 Ben Guerir, Morocco
| | - Arnab Bhowmik
- Department of Natural Resources and Environmental Design, North Carolina A&T State University, Greensboro, NC 27411, USA;
| | - Amr Elkelish
- Department of Plant Physiology, Matthias Schleiden Institute of Genetics, Bioinformatics and Molecular Botany, Friedrich-Schiller-University, 07743 Jena, Germany; (R.O.); (A.E.)
- Botany Department, Faculty of Science, Suez Canal University, Ismailia 41522, Egypt
| | - Saad El-Din Hassan
- Department of Botany and Microbiology, Faculty of Science, Al-Azhar University, Nasr City, Cairo 11884, Egypt; (A.M.E.); (M.A.A.-R.); (S.S.S.); (A.E.)
| |
Collapse
|
48
|
Bacterial Endophytes of Spring Wheat Grains and the Potential to Acquire Fe, Cu, and Zn under Their Low Soil Bioavailability. BIOLOGY 2021; 10:biology10050409. [PMID: 34063099 PMCID: PMC8148187 DOI: 10.3390/biology10050409] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 04/27/2021] [Accepted: 05/01/2021] [Indexed: 11/30/2022]
Abstract
Simple Summary Unmasking the overall endophytic bacteria communities from wheat grains may help to identify and describe the microbial colonization of bread and emmer varieties, their link to the bioactive compounds produced, and their possible role in mineral nutrition. The possibility of using microorganisms to improve the microelemental composition of grain is an important food security concern, as approximately one-third of the human population experiences latent starvation caused by Fe (anemia), Zn, or Cu deficiency. Four wheat varieties from T. aestivum L. and T. turgidum subsp. dicoccum were grown in field conditions with low bioavailability of microelements in the soil. Varietal differences in the yield, yield characteristics, and the grain micronutrient concentrations were compared with the endophytic bacteria isolated from the grains. Twelve different bacterial isolates were obtained that represented the genera Staphylococcus, Pantoea, Sphingobium, Bacillus, Kosakonia, and Micrococcus. All studied strains were able to synthesize indole-related compounds (IRCs) with phytohormonal activity. IRCs produced by the bacterial genera Pantoea spp. and Bacillus spp. isolated from high-yielding Oksamyt myronivs’kyi and Holikovs’ka grains may be considered as one of the determinants of the yield of wheat and its nutritional characteristics. Abstract Wheat grains are usually low in essential micronutrients. In resolving the problem of grain micronutritional quality, microbe-based technologies, including bacterial endophytes, seem to be promising. Thus, we aimed to (1) isolate and identify grain endophytic bacteria from selected spring wheat varieties (bread Oksamyt myronivs’kyi, Struna myronivs’ka, Dubravka, and emmer Holikovs’ka), which were all grown in field conditions with low bioavailability of microelements, and (2) evaluate the relationship between endophytes’ abilities to synthesize auxins and the concentration of Fe, Zn, and Cu in grains. The calculated biological accumulation factor (BAF) allowed for comparing the varietal ability to uptake and transport micronutrients to the grains. For the first time, bacterial endophytes were isolated from grains of emmer wheat T. turgidum subsp. dicoccum. Generally, the 12 different isolates identified in the four varieties belonged to the genera Staphylococcus, Pantoea, Sphingobium, Bacillus, Kosakonia, and Micrococcus (NCBI accession numbers: MT302194—MT302204, MT312840). All the studied strains were able to synthesize the indole-related compounds (IRCs; max: 16.57 µg∙mL−1) detected using the Salkowski reagent. The IRCs produced by the bacterial genera Pantoea spp. and Bacillus spp. isolated from high-yielding Oksamyt myronivs’kyi and Holikovs’ka grains may be considered as one of the determinants of the yield of wheat and its nutritional characteristics.
Collapse
|
49
|
Yadav AN, Kour D, Kaur T, Devi R, Yadav A, Dikilitas M, Abdel-Azeem AM, Ahluwalia AS, Saxena AK. Biodiversity, and biotechnological contribution of beneficial soil microbiomes for nutrient cycling, plant growth improvement and nutrient uptake. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2021. [DOI: 10.1016/j.bcab.2021.102009] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
|
50
|
Agbodjato NA, Adoko MY, Babalola OO, Amogou O, Badé FT, Noumavo PA, Adjanohoun A, Baba-Moussa L. Efficacy of Biostimulants Formulated With Pseudomonas putida and Clay, Peat, Clay-Peat Binders on Maize Productivity in a Farming Environment in Southern Benin. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2021. [DOI: 10.3389/fsufs.2021.666718] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Maize plays a vital role in Benin's agricultural production systems. However, at the producer-level, yields are still low, although the production of this cereal is necessary for food security. The aims of this study were to assess the efficacy of solid biostimulants formulated from the rhizobacteria Pseudomonas putida and different binders on maize cultivation in the farming environment in three (03) study areas in South Benin. For this purpose, three (03) biostimulants were formulated based on Pseudomonas putida and the clay, peat and clay-peat combinations binders. The experimental design was a randomized block of four (04) treatments with 11 replicates per study area. Each replicate represented one producer. The trials were set up at 33 producers in the study areas of Adakplamè, Hayakpa and Zouzouvou in Southern Benin. The results obtained show that the best height, stem diameter, leaf area as obtained by applying biostimulants based on P. putida and half dose of NPK and Urea with respective increases of 15.75, 15.93, and 15.57% as compared to the full dose of NPK and Urea. Regarding maize yield, there was no significant difference between treatments and the different study areas. Taken together, the different biostimulants formulations were observed to be better than the farmers' practice in all the zones and for all the parameters evaluated, with the formulation involving Pseudomonas putida on the clay binder, and the half-dose of NPK and Urea showing the best result. The biostimulant formulated based on clay + Pseudomonas putida could be used in agriculture for a more sustainable and environmentally friendly maize production in Benin.
Collapse
|