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Targońska-Karasek M, Kwiatek M, Groszyk J, Walczewski J, Kowalczyk M, Pawelec S, Boczkowska M, Rucińska A. Characteristic of the gene candidate SecARS encoding alkylresorcinol synthase in Secale. Mol Biol Rep 2023; 50:8373-8383. [PMID: 37615923 PMCID: PMC10520190 DOI: 10.1007/s11033-023-08684-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Accepted: 07/17/2023] [Indexed: 08/25/2023]
Abstract
BACKGROUND Alkylresorcinols (ARs) are compounds belonging to the class of phenolic lipids. A rich source of ARs are cereal grains such as rye, wheat, triticale or barley. ARs found in plants are characterized by a variety of biological properties such as antimicrobial, antifungal and cytotoxic activity. Moreover, they are proven to have a positive influence on human health. Here, we aimed to find and characterize the gene with ARs synthase activity in the species Secale cereale. METHODS AND RESULTS Using BAC library screening, two BAC clones containing the gene candidate were isolated and sequenced. Bioinformatic analyses of the resulting contigs were used to examine the structure and other features of the gene, including promoter, intron, 3'UTR and 5'UTR. Mapping using the FISH procedure located the gene on the 4R chromosome. Comparative analysis showed that the gene is highly similar to sequences coding for type III polyketide synthase. The level of gene expression in various parts of the plant was investigated, and the biochemical function of the gene was confirmed by heterologous expression in yeast. CONCLUSIONS The conducted analyses contributed to a better understanding of the processes related to ARs synthesis. Although the research concerned the rye model, the knowledge gained may help in understanding the genetic basis of ARs biosynthesis in other species of the Poaceae family as well.
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Affiliation(s)
- Małgorzata Targońska-Karasek
- Polish Academy of Sciences Botanical Garden-Center for Biological Diversity Conservation in Powsin, Warszawa, Poland.
| | - Michał Kwiatek
- Department of Genetics and Plant Breeding, Poznań University of Life Sciences, Poznań, Poland
| | - Jolanta Groszyk
- Plant Breeding and Acclimatization Institute (IHAR), National Research Institute, Radzików, Poland
| | - Jakub Walczewski
- Plant Breeding and Acclimatization Institute (IHAR), National Research Institute, Radzików, Poland
| | - Mariusz Kowalczyk
- Institute of Soil Science and Plant Cultivation, State Research Institute, 24-100, Puławy, Poland
| | - Sylwia Pawelec
- Institute of Soil Science and Plant Cultivation, State Research Institute, 24-100, Puławy, Poland
| | - Maja Boczkowska
- Plant Breeding and Acclimatization Institute (IHAR), National Research Institute, Radzików, Poland
| | - Anna Rucińska
- Polish Academy of Sciences Botanical Garden-Center for Biological Diversity Conservation in Powsin, Warszawa, Poland
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2
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Sue M, Fujii M, Fujimaki T. Increased benzoxazinoid (Bx) levels in wheat seedlings via jasmonic acid treatment and etiolation and their effects on Bx genes including Bx6. Biochem Biophys Rep 2021; 27:101059. [PMID: 34195389 PMCID: PMC8220570 DOI: 10.1016/j.bbrep.2021.101059] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Revised: 06/11/2021] [Accepted: 06/11/2021] [Indexed: 10/29/2022] Open
Abstract
Wheat accumulates benzoxazinoid (Bx) as a defensive compound. While Bx occurs at high concentrations, particularly in the early growth stages, its mechanism of regulation remains unclear. In the present study, we first examined the effects of several plant hormones on Bx concentrations in wheat seedlings. Among the compounds tested, jasmonate (JA) elevated the concentrations of DIMBOA-Glc (2-β-D-glucoside of 2,4-dihydroxy-7-methoy-1,4-benzoxazin-3-one), the primary Bx species in intact wheat seedlings, without a significant increase in HDMBOA-Glc (4-O-methyl-DIMBOA-Glc), which is known to be upregulated by stresses. In addition, growing the plants in the dark increased DIMBOA-Glc levels. Quantification of the Bx-biosynthetic genes showed that TaBx8 (UDP-Glc:Bx glucosyltrasferase) was influenced by neither JA nor etiolation, indicating that TaBx8 is under the regulation mechanism distinct from the mechanisms influencing the others. In addition, none of the other gene expression patterns exhibited considerable correlation with DIMBOA-Glc accumulation. Since there was no correlation between transcript levels of the genes involved in Bx biosynthesis and Bx accumulation, other factors may control the levels of Bx in wheat. In the course of gene analyses, we isolated TaBx6, one of the last two genes that had not been identified in wheat in the DIMBOA-Glc biosynthetic pathway. All the four TaBx6 genes cloned in the present study were expressed in Escherichia coli and characterized their activity.
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Affiliation(s)
- Masayuki Sue
- Department of Agricultural Chemistry, Faculty of Applied Biosciences, Tokyo University of Agriculture, Sakuragaoka 1-1-1, Setagaya, Tokyo, 156-8502, Japan
| | - Miha Fujii
- Department of Agricultural Chemistry, Faculty of Applied Biosciences, Tokyo University of Agriculture, Sakuragaoka 1-1-1, Setagaya, Tokyo, 156-8502, Japan
| | - Takahiro Fujimaki
- Department of Agricultural Chemistry, Faculty of Applied Biosciences, Tokyo University of Agriculture, Sakuragaoka 1-1-1, Setagaya, Tokyo, 156-8502, Japan
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3
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Benzoxazinoids Biosynthesis in Rye (Secale cereale L.) Is Affected by Low Temperature. AGRONOMY-BASEL 2020. [DOI: 10.3390/agronomy10091260] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Benzoxazinoids (BXs) are specialized metabolites with protective properties that are synthesized predominantly by Poaceae species, including rye (Secale cereale). Among factors known to influence BXs production, prolonged low temperature has not been studied previously. In this study, the influence of cultivation at 4 °C, which is essential for vernalization, on the concentration of BXs (HBOA, DIBOA, GDIBOA, DIMBOA, GDIMBOA, and MBOA) and the expression level of genes involved in the BX biosynthesis pathway (ScBx1–ScBx5 and ScIgl) in three rye inbred lines was investigated. After cultivation for seven weeks at 4 °C, the expression level of all analyzed genes and BX concentrations had decreased compared with those at the initiation of treatment (21 days after germination) in control and cold-treated plants. At this time point, the decrease in BX concentrations and gene expression was lower in cold-treated plants than in untreated plants. In contrast, at 77 days after germination, the gene expression levels and BX concentrations in untreated plants had generally increased. Investigation of the vernalization impact on rye BXs accumulation, as well as on Bx gene expression, may aid with determination of the most suitable winter lines and cultivars of rye for cultivation and breeding purposes.
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Święcicka M, Dmochowska-Boguta M, Orczyk W, Grądzielewska A, Stochmal A, Kowalczyk M, Bolibok L, Rakoczy-Trojanowska M. Changes in benzoxazinoid contents and the expression of the associated genes in rye (Secale cereale L.) due to brown rust and the inoculation procedure. PLoS One 2020; 15:e0233807. [PMID: 32470009 PMCID: PMC7259783 DOI: 10.1371/journal.pone.0233807] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2020] [Accepted: 05/12/2020] [Indexed: 12/19/2022] Open
Abstract
Benzoxazinoids (BXs) are secondary metabolites with diverse functions, but are primarily involved in protecting plants, mainly from the family Poaceae, against insects and fungal pathogens. Rye is a cereal crop that is highly resistant to biotic stresses. However, its susceptibility to brown rust caused by Puccinia recondita f. sp. secalis (Prs) is still a major problem affecting its commercial production. Additionally, the genetic and metabolic factors related to this disease remain poorly characterized. In this study, we investigated whether and to what extent the brown rust infection and the inoculation procedure affect the contents of specific BXs (HBOA, GDIBOA, DIBOA, GDIMBOA, DIMBOA, and MBOA) and the expression of genes related to BX (ScBx1-5, ScIgl, and Scglu). We revealed that treatments with water and a urediniospore suspension usually downregulate gene expression levels. Moreover, HBOA and DIBOA contents decreased, whereas the contents of the remaining metabolites increased. Specifically, the MBOA content increased more after the mock treatment than after the Prs treatment, whereas the increase in GDIBOA and GDIMBOA levels was usually due to the Prs infection, especially at two of the most critical time-points, 17 and 24 h post-treatment. Therefore, GDIBOA and GDIMBOA are glucosides that are important components of rye defence responses to brown rust. Furthermore, along with MBOA, they protect rye against the stress associated with the inoculation procedure used in this study.
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Affiliation(s)
- Magdalena Święcicka
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences (SGGW), Warsaw, Poland
| | - Marta Dmochowska-Boguta
- Department of Genetic Engineering, Plant Breeding and Acclimatization Institute–National Research Institute, Radzików, Błonie, Poland
| | - Wacław Orczyk
- Department of Genetic Engineering, Plant Breeding and Acclimatization Institute–National Research Institute, Radzików, Błonie, Poland
| | - Agnieszka Grądzielewska
- Department of Horticultural Plant Genetics and Breeding, Institute of Plant Genetics, Breeding and Biotechnology, University of Life Sciences in Lublin, Lublin, Poland
| | - Anna Stochmal
- Department of Biochemistry and Crop Quality, Institute of Soil Science and Plant Cultivation—State Research Institute, Puławy, Poland
| | - Mariusz Kowalczyk
- Department of Biochemistry and Crop Quality, Institute of Soil Science and Plant Cultivation—State Research Institute, Puławy, Poland
| | - Leszek Bolibok
- Department of Forest Silviculture, Institute of Forest Sciences, Warsaw University of Life Sciences (SGGW), Warsaw, Poland
| | - Monika Rakoczy-Trojanowska
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences (SGGW), Warsaw, Poland
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Wlazło A, Święcicka M, Koter MD, Krępski T, Bolibok L, Stochmal A, Kowalczyk M, Rakoczy-Trojanowska M. Genes ScBx1 and ScIgl-Competitors or Cooperators? Genes (Basel) 2020; 11:genes11020223. [PMID: 32093268 PMCID: PMC7074272 DOI: 10.3390/genes11020223] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Revised: 02/03/2020] [Accepted: 02/05/2020] [Indexed: 12/16/2022] Open
Abstract
Two genes, Bx1 and Igl, both encoding indole-3-glycerol phosphate lyase (IGL), are believed to control the conversion of indole-3-glycerol phosphate (IGP) to indole. The first of these has generally been supposed to be regulated developmentally, being expressed at early stages of plant development with the indole being used in the benzoxazinoid (BX) biosynthesis pathway. In contrast, it has been proposed that the second one is regulated by stresses and that the associated free indole is secreted as a volatile. However, our previous results contradicted this. In the present study, we show that the ScIgl gene takes over the role of ScBx1 at later developmental stages, between the 42nd and 70th days after germination. In the majority of plants with silenced ScBx1 expression, ScIgl was either expressed at a significantly higher level than ScBx1 or it was the only gene with detectable expression. Therefore, we postulate that the synthesis of indole used in BX biosynthesis in rye is controlled by both ScBx1 and ScIgl, which are both regulated developmentally and by stresses. In silico and in vivo analyses of the promoter sequences further confirmed our hypothesis that the roles and modes of regulation of the ScBx1 and ScIgl genes are similar.
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Affiliation(s)
- Anna Wlazło
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, 02-787 Warsaw, Poland; (A.W.); (M.Ś.); (M.D.K.); (T.K.)
| | - Magdalena Święcicka
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, 02-787 Warsaw, Poland; (A.W.); (M.Ś.); (M.D.K.); (T.K.)
| | - Marek D. Koter
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, 02-787 Warsaw, Poland; (A.W.); (M.Ś.); (M.D.K.); (T.K.)
| | - Tomasz Krępski
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, 02-787 Warsaw, Poland; (A.W.); (M.Ś.); (M.D.K.); (T.K.)
| | - Leszek Bolibok
- Department of Silviculture, Institute of Forest Sciences, Warsaw University of Life Sciences, 02-787 Warsaw, Poland;
| | - Anna Stochmal
- Department of Biochemistry and Crop Quality, Institute of Soil Science and Plant Cultivation, State Research Institute, 24-100 Puławy, Poland; (A.S.); (M.K.)
| | - Mariusz Kowalczyk
- Department of Biochemistry and Crop Quality, Institute of Soil Science and Plant Cultivation, State Research Institute, 24-100 Puławy, Poland; (A.S.); (M.K.)
| | - Monika Rakoczy-Trojanowska
- Department of Plant Genetics, Breeding and Biotechnology, Institute of Biology, Warsaw University of Life Sciences, 02-787 Warsaw, Poland; (A.W.); (M.Ś.); (M.D.K.); (T.K.)
- Correspondence: ; Tel.: +48-225932150
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Hunter CT, Block AK, Christensen SA, Li QB, Rering C, Alborn HT. Setaria viridis as a model for translational genetic studies of jasmonic acid-related insect defenses in Zea mays. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 291:110329. [PMID: 31928686 DOI: 10.1016/j.plantsci.2019.110329] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Revised: 10/24/2019] [Accepted: 11/01/2019] [Indexed: 06/10/2023]
Abstract
Little is known regarding insect defense pathways in Setaria viridis (setaria), a model system for panicoid grasses, including Zea mays (maize). It is thus of interest to compare insect herbivory responses of setaria and maize. Here we use metabolic, phylogenetic, and gene expression analyses to measure a subset of jasmonic acid (JA)-related defense responses to leaf-chewing caterpillars. Phylogenetic comparisons of known defense-related maize genes were used to identify putative orthologs in setaria, and candidates were tested by quantitative PCR to determine transcriptional responses to insect challenge. Our findings show that while much of the core JA-related metabolic and genetic responses appear conserved between setaria and maize, production of downstream secondary metabolites such as benzoxazinoids and herbivore-induced plant volatiles are dissimilar. This diversity of chemical defenses and gene families involved in secondary metabolism among grasses presents new opportunities for cross species engineering. The high degree of genetic similarity and ease of orthologous gene identification between setaria and maize make setaria an excellent species for translational genetic studies, but the species specificity of downstream insect defense chemistry makes some pathways unamenable to cross-species comparisons.
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Affiliation(s)
- Charles T Hunter
- Chemistry Research Unit, USDA Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, 32608, USA.
| | - Anna K Block
- Chemistry Research Unit, USDA Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, 32608, USA
| | - Shawn A Christensen
- Chemistry Research Unit, USDA Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, 32608, USA
| | - Qin-Bao Li
- Chemistry Research Unit, USDA Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, 32608, USA
| | - Caitlin Rering
- Chemistry Research Unit, USDA Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, 32608, USA
| | - Hans T Alborn
- Chemistry Research Unit, USDA Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, 32608, USA
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Lima WG, dos Santos FJ, Cristina Soares A, Macías FA, Molinillo JMG, Maria Siqueira Ferreira J, Máximo de Siqueira J. Synthesis and antimicrobial activity of some benzoxazinoids derivatives of 2-nitrophenol and 3-hydroxy-2-nitropyridine. SYNTHETIC COMMUN 2019. [DOI: 10.1080/00397911.2018.1554146] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- William Gustavo Lima
- Laboratório de Microbiologia Médica, Campus Centro-oeste Dona Lindu, Universidade Federal de São João del-Rei, Divinópolis, Brazil
| | - Flávio José dos Santos
- Laboratório de Farmacognosia e Química de Produtos Naturais, Campus Centro-oeste Dona Lindu, Universidade Federal de São João del-Rei, Divinópolis, Brazil
| | - Adriana Cristina Soares
- Laboratório de Farmacologia da Dor e Inflamação, Campus Centro-oeste Dona Lindu, Universidade Federal de São João del-Rei, Divinópolis, Brazil
| | - Francisco A. Macías
- Allelopathy Group, Department of Organic Chemistry, Institute of Biomolecules (INBIO), School of Science, University of Cadiz, Puerto Real, Spain
| | - José M. G. Molinillo
- Allelopathy Group, Department of Organic Chemistry, Institute of Biomolecules (INBIO), School of Science, University of Cadiz, Puerto Real, Spain
| | | | - João Máximo de Siqueira
- Laboratório de Farmacognosia e Química de Produtos Naturais, Campus Centro-oeste Dona Lindu, Universidade Federal de São João del-Rei, Divinópolis, Brazil
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8
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Guo L, Qiu J, Li LF, Lu B, Olsen K, Fan L. Genomic Clues for Crop-Weed Interactions and Evolution. TRENDS IN PLANT SCIENCE 2018; 23:1102-1115. [PMID: 30293809 DOI: 10.1016/j.tplants.2018.09.009] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2018] [Revised: 08/10/2018] [Accepted: 09/11/2018] [Indexed: 05/11/2023]
Abstract
Agronomically critical weeds that have evolved alongside crop species are characterized by rapid adaptation and invasiveness, which can result in an enormous reduction in annual crop yield worldwide. We discuss here recent genome-based research studies on agricultural weeds and crop-weed interactions that reveal several major evolutionary innovations such as de-domestication, interactions mediated by allelochemical secondary metabolites, and parasitic genetic elements that play crucial roles in enhancing weed invasiveness in agricultural settings. We believe that these key studies will guide future research into the evolution of crop-weed interactions, and further the development of practical applications in agricultural weed control and crop breeding.
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Affiliation(s)
- Longbiao Guo
- State Key Lab for Rice Biology, China National Rice Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou 310006, China; These authors contributed equally to this work
| | - Jie Qiu
- Institute of Crop Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China; Department of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA; These authors contributed equally to this work
| | - Lin-Feng Li
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, School of Life Sciences, Fudan University, Shanghai 200438, China
| | - Baorong Lu
- Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, School of Life Sciences, Fudan University, Shanghai 200438, China
| | - Kenneth Olsen
- Department of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA
| | - Longjiang Fan
- Institute of Crop Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China.
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de Bruijn WJC, Gruppen H, Vincken JP. Structure and biosynthesis of benzoxazinoids: Plant defence metabolites with potential as antimicrobial scaffolds. PHYTOCHEMISTRY 2018; 155:233-243. [PMID: 30218957 DOI: 10.1016/j.phytochem.2018.07.005] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2018] [Revised: 07/10/2018] [Accepted: 07/16/2018] [Indexed: 06/08/2023]
Abstract
Benzoxazinoids, comprising the classes of benzoxazinones and benzoxazolinones, are a set of specialised metabolites produced by the plant family Poaceae (formerly Gramineae), and some dicots. The family Poaceae in particular contains several important crops like maize and wheat. Benzoxazinoids play a role in allelopathy and as defence compounds against (micro)biological threats. The effectivity of benzoxazinones in these functionalities is largely imposed by the subclasses (determined by N substituent). In this review, we provide an overview of all currently known natural benzoxazinoids and a summary of the current state of knowledge of their biosynthesis. We also evaluated their antimicrobial activity based on minimum inhibitory concentration (MIC) values reported in literature. Monomeric natural benzoxazinoids seem to lack potency as antimicrobial agents. The 1,4-benzoxazin-3-one backbone, however, has been shown to be a potential scaffold for designing new antimicrobial compounds. This has been demonstrated by a number of studies that report potent activity of synthetic derivatives of 1,4-benzoxazin-3-one, which possess MIC values down to 6.25 μg mL-1 against pathogenic fungi (e.g. C. albicans) and 16 μg mL-1 against bacteria (e.g. S. aureus and E. coli). Observations on the structural requirements for allelopathy, insecticidal, and antimicrobial activity suggest that they are not necessarily conferred by similar mechanisms.
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Affiliation(s)
- Wouter J C de Bruijn
- Laboratory of Food Chemistry, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands
| | - Harry Gruppen
- Laboratory of Food Chemistry, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands
| | - Jean-Paul Vincken
- Laboratory of Food Chemistry, Wageningen University, P.O. Box 17, 6700 AA Wageningen, The Netherlands.
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10
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Plant Protection by Benzoxazinoids—Recent Insights into Biosynthesis and Function. AGRONOMY-BASEL 2018. [DOI: 10.3390/agronomy8080143] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Benzoxazinoids (BXs) are secondary metabolites present in many Poaceae including the major crops maize, wheat, and rye. In contrast to other potentially toxic secondary metabolites, BXs have not been targets of counter selection during breeding and the effect of BXs on insects, microbes, and neighbouring plants has been recognised. A broad knowledge about the mode of action and metabolisation in target organisms including herbivorous insects, aphids, and plants has been gathered in the last decades. BX biosynthesis has been elucidated on a molecular level in crop cereals. Recent advances, mainly made by investigations in maize, uncovered a significant diversity in the composition of BXs within one species. The pattern can be specific for single plant lines and dynamic changes triggered by biotic and abiotic stresses were observed. Single BXs might be toxic, repelling, attractive, and even growth-promoting for insects, depending on the particular species. BXs delivered into the soil influence plant and microbial communities. Furthermore, BXs can possibly be used as signalling molecules within the plant. In this review we intend to give an overview of the current data on the biosynthesis, structure, and function of BXs, beyond their characterisation as mere phytotoxins.
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Borzęcka E, Hawliczek-Strulak A, Bolibok L, Gawroński P, Tofil K, Milczarski P, Stojałowski S, Myśków B, Targońska-Karasek M, Grądzielewska A, Smolik M, Kilian A, Bolibok-Brągoszewska H. Effective BAC clone anchoring with genotyping-by-sequencing and Diversity Arrays Technology in a large genome cereal rye. Sci Rep 2018; 8:8428. [PMID: 29849048 PMCID: PMC5976670 DOI: 10.1038/s41598-018-26541-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2018] [Accepted: 05/16/2018] [Indexed: 11/09/2022] Open
Abstract
Identification of bacterial artificial chromosome (BAC) clones containing specific sequences is a prerequisite for many applications, such as physical map anchoring or gene cloning. Existing BAC library screening strategies are either low-throughput or require a considerable initial input of resources for platform establishment. We describe a high-throughput, reliable, and cost-effective BAC library screening approach deploying genotyping platforms which are independent from the availability of sequence information: a genotyping-by-sequencing (GBS) method DArTSeq and the microarray-based Diversity Arrays Technology (DArT). The performance of these methods was tested in a very large and complex rye genome. The DArTseq approach delivered superior results: a several fold higher efficiency of addressing genetic markers to BAC clones and anchoring of BAC clones to genetic map and also a higher reliability. Considering the sequence independence of the platform, the DArTseq-based library screening can be proposed as an attractive method to speed up genomics research in resource poor species.
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Affiliation(s)
- Ewa Borzęcka
- Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life Sciences - SGGW, Nowoursynowska 159, 02-776, Warsaw, Poland
| | - Anna Hawliczek-Strulak
- Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life Sciences - SGGW, Nowoursynowska 159, 02-776, Warsaw, Poland
| | - Leszek Bolibok
- Department of Silviculture, Warsaw University of Life Sciences - SGGW, Nowoursynowska 159, 02-776, Warsaw, Poland
| | - Piotr Gawroński
- Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life Sciences - SGGW, Nowoursynowska 159, 02-776, Warsaw, Poland
| | - Katarzyna Tofil
- Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life Sciences - SGGW, Nowoursynowska 159, 02-776, Warsaw, Poland
| | - Paweł Milczarski
- Department of Plant Genetics, Breeding and Biotechnology, West-Pomeranian University of Technology, Slowackiego 17, 71-434, Szczecin, Poland
| | - Stefan Stojałowski
- Department of Plant Genetics, Breeding and Biotechnology, West-Pomeranian University of Technology, Slowackiego 17, 71-434, Szczecin, Poland
| | - Beata Myśków
- Department of Plant Genetics, Breeding and Biotechnology, West-Pomeranian University of Technology, Slowackiego 17, 71-434, Szczecin, Poland
| | - Małgorzata Targońska-Karasek
- Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life Sciences - SGGW, Nowoursynowska 159, 02-776, Warsaw, Poland
| | - Agnieszka Grądzielewska
- Institute of Genetics, Breeding and Biotechnology, University of Life Sciences in Lublin, Akademicka 15, 20-950, Lublin, Poland
| | - Miłosz Smolik
- Department of Plant Genetics, Breeding and Biotechnology, West-Pomeranian University of Technology, Slowackiego 17, 71-434, Szczecin, Poland
| | - Andrzej Kilian
- Diversity Arrays Technology Pty Ltd, University of Canberra, Kirinari st, ACT 2617, Bruce, Australia
| | - Hanna Bolibok-Brągoszewska
- Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life Sciences - SGGW, Nowoursynowska 159, 02-776, Warsaw, Poland.
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Tanwir F, Dionisio G, Adhikari KB, Fomsgaard IS, Gregersen PL. Corrigendum to "Biosynthesis and chemical transformation of benzoxazinoids in rye during seed germination and the identification of a rye Bx6-like gene" [Phytochemistry 140 (2017) 95-107]. PHYTOCHEMISTRY 2018; 145:214. [PMID: 28911879 DOI: 10.1016/j.phytochem.2017.09.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Affiliation(s)
- Fariha Tanwir
- Department of Molecular Biology and Genetics, Aarhus University, Denmark
| | - Giuseppe Dionisio
- Department of Molecular Biology and Genetics, Aarhus University, Denmark
| | | | | | - Per L Gregersen
- Department of Molecular Biology and Genetics, Aarhus University, Denmark.
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Milczarski P, Masojć P, Krajewski P, Stochmal A, Kowalczyk M, Angelov M, Ivanova V, Schollenberger M, Wakuliński W, Banaszak Z, Banaszak K, Rakoczy-Trojanowska M. QTL mapping for benzoxazinoid content, preharvest sprouting, α-amylase activity, and leaf rust resistance in rye (Secale cereale L.). PLoS One 2017; 12:e0189912. [PMID: 29267335 PMCID: PMC5739458 DOI: 10.1371/journal.pone.0189912] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2017] [Accepted: 12/05/2017] [Indexed: 11/18/2022] Open
Abstract
Mapping population of recombinant inbred lines (RILs) representing 541 × Ot1-3 cross exhibited wide variations of benzoxazinoid (BX) content in leaves and roots, brown rust resistance, α-amylase activity in the grain, and resistance to preharvest sprouting. QTL mapping of major BX species using a DArT-based map revealed a complex genetic architecture underlying the production of these main secondary metabolites engaged in stress and allelopathy responses. The synthesis of BX in leaves and roots was found to be regulated by different QTL. The QTL for the BX content, rust resistance, α-amylase activity, and preharvest sprouting partially overlapped; this points to their common genetic regulation by a definite subset of genes. Only one QTL for BX located on chromosome 7R coincided with the loci of the ScBx genes, which were mapped as two clusters on chromosomes 5RS (Bx3-Bx5) and 7R (Bx1-Bx2). The QTL common for several BX species, rust resistance, preharvest sprouting, and α-amylase activity are interesting objects for further exploration aimed at developing common markers for these important agronomic traits.
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Affiliation(s)
- Paweł Milczarski
- West Pomeranian University of Technology, Szczecin, Poland
- * E-mail:
| | - Piotr Masojć
- West Pomeranian University of Technology, Szczecin, Poland
| | - Paweł Krajewski
- Institute of Plant Genetics, Polish Academy of Sciences, Poznań, Poland
| | - Anna Stochmal
- Institute of Soil Science and Plant Cultivation–State Research Institute, Puławy, Poland
| | - Mariusz Kowalczyk
- Institute of Soil Science and Plant Cultivation–State Research Institute, Puławy, Poland
| | - Mihail Angelov
- West Pomeranian University of Technology, Szczecin, Poland
| | | | | | | | | | | | - Monika Rakoczy-Trojanowska
- Warsaw University of Life Sciences, Warszawa, Poland
- Polish Academy of Sciences Botanical Garden—Centre For Biological Diversity Conservation in Powsin Warszawa, Poland
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Powell JJ, Carere J, Sablok G, Fitzgerald TL, Stiller J, Colgrave ML, Gardiner DM, Manners JM, Vogel JP, Henry RJ, Kazan K. Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat. Sci Rep 2017; 7:17212. [PMID: 29222453 PMCID: PMC5722949 DOI: 10.1038/s41598-017-17454-3] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2017] [Accepted: 11/26/2017] [Indexed: 11/09/2022] Open
Abstract
Fusarium crown rot (FCR) of wheat and barley, predominantly caused by the fungal pathogen Fusarium pseudograminearum, is a disease of economic significance. The quantitative nature of FCR resistance within cultivated wheat germplasm has significantly limited breeding efforts to enhanced FCR resistance in wheat. In this study, we characterized the molecular responses of Brachypodium distachyon (Brachypodium hereafter) to F. pseudograminearum infection using RNA-seq to determine whether Brachypodium can be exploited as a model system towards better understanding of F. pseudograminearum-wheat interaction. The transcriptional response to infection in Brachypodium was strikingly similar to that previously reported in wheat, both in shared expression patterns of wheat homologs of Brachypodium genes and functional overlap revealed through comparative gene ontology analysis in both species. Metabolites produced by various biosynthetic pathways induced in both wheat and Brachypodium were quantified, revealing a high degree of overlap between these two species in metabolic response to infection but also showed Brachypodium does not produce certain defence-related metabolites found in wheat. Functional analyses of candidate genes identified in this study will improve our understanding of resistance mechanisms and may lead to the development of new strategies to protect cereal crops from pathogen infection.
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Affiliation(s)
- Jonathan J Powell
- Commonwealth Scientific and Industrial Research Organization Agriculture and Food, St Lucia, Queensland, 4067, Australia.
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), University of Queensland, St Lucia, 4067, Queensland, Australia.
| | - Jason Carere
- Commonwealth Scientific and Industrial Research Organization Agriculture and Food, St Lucia, Queensland, 4067, Australia
| | - Gaurav Sablok
- Plant Functional Biology and Climate Change Cluster (C3), University of Technology Sydney, PO Box 123, Broadway, NSW 2007, Sydney, Australia
| | - Timothy L Fitzgerald
- Commonwealth Scientific and Industrial Research Organization Agriculture and Food, St Lucia, Queensland, 4067, Australia
| | - Jiri Stiller
- Commonwealth Scientific and Industrial Research Organization Agriculture and Food, St Lucia, Queensland, 4067, Australia
| | - Michelle L Colgrave
- Commonwealth Scientific and Industrial Research Organization Agriculture and Food, St Lucia, Queensland, 4067, Australia
| | - Donald M Gardiner
- Commonwealth Scientific and Industrial Research Organization Agriculture and Food, St Lucia, Queensland, 4067, Australia
| | - John M Manners
- Commonwealth Scientific and Industrial Research Organization Agriculture and Food, Black Mountain, Australian Capital Territory, 2601, Australia
| | - John P Vogel
- Joint Genome Institute, United States Department of Energy, Walnut Creek, CA, 94598, USA
| | - Robert J Henry
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), University of Queensland, St Lucia, 4067, Queensland, Australia
| | - Kemal Kazan
- Commonwealth Scientific and Industrial Research Organization Agriculture and Food, St Lucia, Queensland, 4067, Australia.
- Queensland Alliance for Agriculture and Food Innovation (QAAFI), University of Queensland, St Lucia, 4067, Queensland, Australia.
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15
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Tanwir F, Dionisio G, Adhikari KB, Fomsgaard IS, Gregersen PL. Biosynthesis and chemical transformation of benzoxazinoids in rye during seed germination and the identification of a rye Bx6-like gene. PHYTOCHEMISTRY 2017; 140:95-107. [PMID: 28472715 DOI: 10.1016/j.phytochem.2017.04.020] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2017] [Revised: 04/20/2017] [Accepted: 04/24/2017] [Indexed: 06/07/2023]
Abstract
Benzoxazinoids are secondary metabolites with plant defense properties and possible health-promoting effects in humans. In this study, the transcriptional activity of ScBx genes (ScBx1-ScBx5; ScBx6-like), involved in benzoxazinoid biosynthesis, was analyzed during germination and early seedling development in rye. Our results showed that ScBx genes had highest levels of expression at 24-30 h after germination, followed by a decrease at later stages. For ScBx1-ScBx5 genes expression was higher in shoots compared with root tissues and vice versa for ScBx6-like gene transcripts. Moreover, methylated forms of benzoxazinoids accumulated in roots rather than in shoots during seedling development, in particular reaching high levels of HMBOA-glc in roots. Chemical profiles of benzoxazinoid accumulation in the developing seedling reflected the combined effects of de novo biosynthesis of the compounds as well as the turnover of compounds either pre-stored in the embryo or de novo biosynthesized. Bioinformatic analysis, together with the differential distribution of ScBx6-like transcripts in root and shoot tissues, suggested the presence of a ZmBx6 homolog encoding a 2-oxoglutarate dependent dehydrogenase in rye. The ScBx6-like cDNA was expressed in E. coli for functional characterization in vitro. LC-MS/MS analysis showed that the purified enzyme was responsible for the oxidation of DIBOA-glc into TRIBOA-glc, strongly suggesting the ScBX6-like enzyme in rye to be a functional ortholog of maize ZmBX6.
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Affiliation(s)
- Fariha Tanwir
- Department of Molecular Biology and Genetics, Aarhus University, Denmark
| | - Giuseppe Dionisio
- Department of Molecular Biology and Genetics, Aarhus University, Denmark
| | | | | | - Per L Gregersen
- Department of Molecular Biology and Genetics, Aarhus University, Denmark.
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Rakoczy-Trojanowska M, Krajewski P, Bocianowski J, Schollenberger M, Wakuliński W, Milczarski P, Masojć P, Targońska-Karasek M, Banaszak Z, Banaszak K, Brukwiński W, Orczyk W, Kilian A. Identification of Single Nucleotide Polymorphisms Associated with Brown Rust Resistance, α-Amylase Activity and Pre-harvest Sprouting in Rye ( Secale cereale L.). PLANT MOLECULAR BIOLOGY REPORTER 2017; 35:366-378. [PMID: 28603340 PMCID: PMC5443880 DOI: 10.1007/s11105-017-1030-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Rye is a crop with relatively high resistance to biotic and abiotic stresses. However, the resistance to brown rust (Puccinia recondita f. sp. secalis) and pre-harvest sprouting are still not satisfactory. High α-amylase activity is also among the main disadvantages of this species. Therefore, effective tools, e.g. molecular markers, allowing precise and environmentally independent selection of favourable alleles are desirable. In the present study, two kinds of association mapping-genome-wide association mapping (GWAM) based on sequences of DArTSeq markers and candidate gene association mapping (CGAM) based on sequences of ScBx genes-were chosen for development of molecular markers fulfilling these criteria. The analysed population consisted of 149 diverse inbred lines (DILs). Altogether, 67 and 11 single nucleotide polymorphisms (SNPs) identified in, respectively, GWAM and CGAM, were significantly associated with the investigated traits: 2 SNPs with resistance to brown rust, 71 SNPs with resistance to pre-harvest sprouting and 5 SNPs with α-amylase activity in the grain. Fifteen SNPs were stable across all environments. The highest number (13) of environmentally stable SNPs was associated with pre-harvest sprouting resistance. The test employing the Kompetitive Allele Specific PCR method proved the versatility of four markers identified in both GWAM and CGAM.
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Affiliation(s)
- Monika Rakoczy-Trojanowska
- Warsaw University of Life Sciences, Warsaw, Poland
- Polish Academy of Sciences Botanical Garden – Centre For Biological Diversity Conservation, Powsin, Warsaw, Poland
| | - Paweł Krajewski
- Institute of Plant Genetics, Polish Academy of Sciences, Poznań, Poland
| | | | | | | | | | - Piotr Masojć
- West Pomeranian University of Technology, Szczecin, Poland
| | - Małgorzata Targońska-Karasek
- Warsaw University of Life Sciences, Warsaw, Poland
- Polish Academy of Sciences Botanical Garden – Centre For Biological Diversity Conservation, Powsin, Warsaw, Poland
| | | | | | | | - Wacław Orczyk
- The Plant Breeding and Acclimatization Institute – National Research Institute, Radzików, Poland
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Oeser B, Kind S, Schurack S, Schmutzer T, Tudzynski P, Hinsch J. Cross-talk of the biotrophic pathogen Claviceps purpurea and its host Secale cereale. BMC Genomics 2017; 18:273. [PMID: 28372538 PMCID: PMC5379732 DOI: 10.1186/s12864-017-3619-4] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2016] [Accepted: 03/10/2017] [Indexed: 11/15/2022] Open
Abstract
BACKGROUND The economically important Ergot fungus Claviceps purpurea is an interesting biotrophic model system because of its strict organ specificity (grass ovaries) and the lack of any detectable plant defense reactions. Though several virulence factors were identified, the exact infection mechanisms are unknown, e.g. how the fungus masks its attack and if the host detects the infection at all. RESULTS We present a first dual transcriptome analysis using an RNA-Seq approach. We studied both, fungal and plant gene expression in young ovaries infected by the wild-type and two virulence-attenuated mutants. We can show that the plant recognizes the fungus, since defense related genes are upregulated, especially several phytohormone genes. We present a survey of in planta expressed fungal genes, among them several confirmed virulence genes. Interestingly, the set of most highly expressed genes includes a high proportion of genes encoding putative effectors, small secreted proteins which might be involved in masking the fungal attack or interfering with host defense reactions. As known from several other phytopathogens, the C. purpurea genome contains more than 400 of such genes, many of them clustered and probably highly redundant. Since the lack of effective defense reactions in spite of recognition of the fungus could very well be achieved by effectors, we started a functional analysis of some of the most highly expressed candidates. However, the redundancy of the system made the identification of a drastic effect of a single gene most unlikely. We can show that at least one candidate accumulates in the plant apoplast. Deletion of some candidates led to a reduced virulence of C. purpurea on rye, indicating a role of the respective proteins during the infection process. CONCLUSIONS We show for the first time that- despite the absence of effective plant defense reactions- the biotrophic pathogen C. purpurea is detected by its host. This points to a role of effectors in modulation of the effective plant response. Indeed, several putative effector genes are among the highest expressed genes in planta.
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Affiliation(s)
- Birgitt Oeser
- Institut für Biologie und Biotechnologie der Pflanzen, Westfälische Wilhelms-Universität, D-48143 Münster, Germany
| | - Sabine Kind
- Institut für Biologie und Biotechnologie der Pflanzen, Westfälische Wilhelms-Universität, D-48143 Münster, Germany
| | - Selma Schurack
- Institut für Biologie und Biotechnologie der Pflanzen, Westfälische Wilhelms-Universität, D-48143 Münster, Germany
| | - Thomas Schmutzer
- Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany
| | - Paul Tudzynski
- Institut für Biologie und Biotechnologie der Pflanzen, Westfälische Wilhelms-Universität, D-48143 Münster, Germany
| | - Janine Hinsch
- Institut für Biologie und Biotechnologie der Pflanzen, Westfälische Wilhelms-Universität, D-48143 Münster, Germany
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Powell JJ, Carere J, Fitzgerald TL, Stiller J, Covarelli L, Xu Q, Gubler F, Colgrave ML, Gardiner DM, Manners JM, Henry RJ, Kazan K. The Fusarium crown rot pathogen Fusarium pseudograminearum triggers a suite of transcriptional and metabolic changes in bread wheat (Triticum aestivum L.). ANNALS OF BOTANY 2017; 119:853-867. [PMID: 27941094 PMCID: PMC5604588 DOI: 10.1093/aob/mcw207] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2016] [Accepted: 08/11/2016] [Indexed: 05/18/2023]
Abstract
Background and Aims Fusarium crown rot caused by the fungal pathogen Fusarium pseudograminearum is a disease of wheat and barley, bearing significant economic cost. Efforts to develop effective resistance to this disease have been hampered by the quantitative nature of resistance and a lack of understanding of the factors associated with resistance and susceptibility. Here, we aimed to dissect transcriptional responses triggered in wheat by F. pseudograminearum infection. Methods We used an RNA-seq approach to analyse host responses during a compatible interaction and identified >2700 wheat genes differentially regulated after inoculation with F. pseudograminearum . The production of a few key metabolites and plant hormones in the host during the interaction was also analysed. Key Results Analysis of gene ontology enrichment showed that a disproportionate number of genes involved in primary and secondary metabolism, signalling and transport were differentially expressed in infected seedlings. A number of genes encoding pathogen-responsive uridine-diphosphate glycosyltransferases (UGTs) potentially involved in detoxification of the Fusarium mycotoxin deoxynivalenol (DON) were differentially expressed. Using a F. pseudograminearum DON-non-producing mutant, DON was shown to play an important role in virulence during Fusarium crown rot. An over-representation of genes involved in the phenylalanine, tryptophan and tyrosine biosynthesis pathways was observed. This was confirmed through metabolite analyses that demonstrated tryptamine and serotonin levels are induced after F. pseudograminearum inoculation. Conclusions Overall, the observed host response in bread wheat to F. pseudograminearum during early infection exhibited enrichment of processes related to pathogen perception, defence signalling, transport and metabolism and deployment of chemical and enzymatic defences. Additional functional analyses of candidate genes should reveal their roles in disease resistance or susceptibility. Better understanding of host responses contributing to resistance and/or susceptibility will aid the development of future disease improvement strategies against this important plant pathogen.
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Affiliation(s)
- Jonathan J. Powell
- Commonwealth Scientific and Industrial Research Organisation (CSIRO) Agriculture, Queensland Bioscience Precinct, St Lucia, 4067 Queensland, Australia
- Queensland Alliance for Agriculture and Food Innovation, University of Queensland, 4072, St Lucia, Queensland, Australia
| | - Jason Carere
- Commonwealth Scientific and Industrial Research Organisation (CSIRO) Agriculture, Queensland Bioscience Precinct, St Lucia, 4067 Queensland, Australia
| | - Timothy L. Fitzgerald
- Commonwealth Scientific and Industrial Research Organisation (CSIRO) Agriculture, Queensland Bioscience Precinct, St Lucia, 4067 Queensland, Australia
| | - Jiri Stiller
- Commonwealth Scientific and Industrial Research Organisation (CSIRO) Agriculture, Queensland Bioscience Precinct, St Lucia, 4067 Queensland, Australia
| | - Lorenzo Covarelli
- Department of Agricultural, Food and Environmental Sciences, University of Perugia, Borgo XX Giugno 74, 06121 Perugia, Italy
| | - Qian Xu
- Commonwealth Scientific and Industrial Research Organisation Agriculture, Black Mountain, Australian Capital Territory, 2610, Australia
| | - Frank Gubler
- Commonwealth Scientific and Industrial Research Organisation Agriculture, Black Mountain, Australian Capital Territory, 2610, Australia
| | - Michelle L. Colgrave
- Commonwealth Scientific and Industrial Research Organisation (CSIRO) Agriculture, Queensland Bioscience Precinct, St Lucia, 4067 Queensland, Australia
| | - Donald M. Gardiner
- Queensland Alliance for Agriculture and Food Innovation, University of Queensland, 4072, St Lucia, Queensland, Australia
| | - John M. Manners
- Commonwealth Scientific and Industrial Research Organisation Agriculture, Black Mountain, Australian Capital Territory, 2610, Australia
| | - Robert J. Henry
- Queensland Alliance for Agriculture and Food Innovation, University of Queensland, 4072, St Lucia, Queensland, Australia
| | - Kemal Kazan
- Commonwealth Scientific and Industrial Research Organisation (CSIRO) Agriculture, Queensland Bioscience Precinct, St Lucia, 4067 Queensland, Australia
- Queensland Alliance for Agriculture and Food Innovation, University of Queensland, 4072, St Lucia, Queensland, Australia
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Groszyk J, Kowalczyk M, Yanushevska Y, Stochmal A, Rakoczy-Trojanowska M, Orczyk W. Identification and VIGS-based characterization of Bx1 ortholog in rye (Secale cereale L.). PLoS One 2017; 12:e0171506. [PMID: 28234909 PMCID: PMC5325281 DOI: 10.1371/journal.pone.0171506] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Accepted: 01/21/2017] [Indexed: 12/28/2022] Open
Abstract
The first step of the benzoxazinoid (BX) synthesis pathway is catalyzed by an enzyme with indole-3-glycerol phosphate lyase activity encoded by 3 genes, Bx1, TSA and Igl. A gene highly homologous to maize and wheat Bx1 has been identified in rye. The goal of the study was to analyze the gene and to experimentally verify its role in the rye BX biosynthesis pathway as a rye ortholog of the Bx1 gene. Expression of the gene showed peak values 3 days after imbibition (dai) and at 21 dai it was undetectable. Changes of the BX content in leaves were highly correlated with the expression pattern until 21 dai. In plants older than 21 dai despite the undetectable expression of the analyzed gene there was still low accumulation of BXs. Function of the gene was verified by correlating its native expression and virus-induced silencing with BX accumulation. Barley stripe mosaic virus (BSMV)-based vectors were used to induce transcriptional (TGS) and posttranscriptional (PTGS) silencing of the analyzed gene. Both strategies (PTGS and TGS) significantly reduced the transcript level of the analyzed gene, and this was highly correlated with lowered BX content. Inoculation with virus-based vectors specifically induced expression of the analyzed gene, indicating up-regulation by biotic stressors. This is the first report of using the BSMV-based system for functional analysis of rye gene. The findings prove that the analyzed gene is a rye ortholog of the Bx1 gene. Its expression is developmentally regulated and is strongly induced by biotic stress. Stable accumulation of BXs in plants older than 21 dai associated with undetectable expression of ScBx1 indicates that the function of the ScBx1 in the BX biosynthesis is redundant with another gene. We anticipate that the unknown gene is a putative ortholog of the Igl, which still remains to be identified in rye.
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Affiliation(s)
- Jolanta Groszyk
- Department of Genetic Engineering, Plant Breeding and Acclimatization Institute – National Research Institute, Blonie, Poland
| | - Mariusz Kowalczyk
- Department of Biochemistry and Crop Quality, Institute of Soil Science and Plant Cultivation State Research Institute, Pulawy, Poland
| | - Yuliya Yanushevska
- Department of Genetic Engineering, Plant Breeding and Acclimatization Institute – National Research Institute, Blonie, Poland
| | - Anna Stochmal
- Department of Biochemistry and Crop Quality, Institute of Soil Science and Plant Cultivation State Research Institute, Pulawy, Poland
| | - Monika Rakoczy-Trojanowska
- Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life Sciences, Warsaw, Poland
| | - Waclaw Orczyk
- Department of Genetic Engineering, Plant Breeding and Acclimatization Institute – National Research Institute, Blonie, Poland
- * E-mail:
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20
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Rakoczy-Trojanowska M, Orczyk W, Krajewski P, Bocianowski J, Stochmal A, Kowalczyk M. ScBx gene based association analysis of hydroxamate content in rye (Secale cereale L.). J Appl Genet 2016; 58:1-9. [PMID: 27465692 PMCID: PMC5243912 DOI: 10.1007/s13353-016-0356-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2016] [Revised: 06/12/2016] [Accepted: 06/21/2016] [Indexed: 11/28/2022]
Abstract
Hydroxamates (HX) are major secondary metabolites synthesized by rye and are responsible for some of the unique properties of this cereal, including good tolerance of biotic and abiotic stresses and allelopathy. Recently, five genes encoding enzymes taking part in HX biosynthesis have been sequenced and characterized, which was the starting point to undertake the present study. Association analysis of the content of six HX–HBOA (2-hydroxy-1,4-benzoxazin-3-one), GDIBOA (2,4-dihydroxy-1,4-benzoxazin-3(4H)-one glucoside), DIBOA (2,4-dihydroxy-1,4-benzoxazin-3(4H)-one), GDIMBOA (2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3(4H)-one glucoside), DIMBOA (2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3(4H)-one) and MBOA (6-methoxy-benzoxazolin-2(3H)-one) in the above-ground parts of plants and roots was performed on a population consisting of 102 and 121 diverse inbred lines, in 2013 and 2014, respectively. Altogether, 48 single nucleotide polymorphisms (SNPs) were found to be associated with the content of at least one HX: 20 SNPs were associated with HX synthesized in the above-ground parts of rye plants (AG-SNP), and 28 were associated with HX synthesized in the roots (R-SNP). The highest number of SNPs was present in genes ScBx1 (9) and ScBx5 (11). The majority of SNPs were affected by environmental factors, except for two: ScBx4_1702 associated with GDIBOA and MBOA contents, and ScBx5_1105 associated with HBOA content in roots.
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Affiliation(s)
- Monika Rakoczy-Trojanowska
- Warsaw University of Life Sciences, Warsaw, Poland.
- Centre For Biological Diversity Conservation in Powsin, Polish Academy of Sciences Botanical Garden, Warsaw, Poland.
| | - Wacław Orczyk
- The Plant Breeding And Acclimatization Institute, National Research Institute, Radzików, Poland
| | - Paweł Krajewski
- Institute of Plant Genetics, Polish Academy of Sciences, Poznań, Poland
| | | | - Anna Stochmal
- Institute of Soil Science and Plant Cultivation - State Research Institute, Pulawy, Poland
| | - Mariusz Kowalczyk
- Institute of Soil Science and Plant Cultivation - State Research Institute, Pulawy, Poland
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