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Dutra LB, Stein JF, da Rocha BS, Berger A, de Souza BA, Prandi BA, Mangini AT, Jarenkow A, Campos AAS, Fan FM, de Almeida Silva MC, Lipp-Nissinen KH, Loncan MR, Augusto MR, Franco AC, de Freitas Bueno R, Rigotto C. Environmental monitoring of SARS-CoV-2 in the metropolitan area of Porto Alegre, Rio Grande do Sul (RS), Brazil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:2129-2144. [PMID: 38057673 DOI: 10.1007/s11356-023-31081-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2023] [Accepted: 11/13/2023] [Indexed: 12/08/2023]
Abstract
Since starts the coronavirus disease 2019 (COVID-19) pandemic identified the presence of genomic fragments of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in various environmental matrices: domestic sewage, surface waters, and contaminated freshwater. Environmental monitoring of SARS-CoV-2 is a tool for evaluating trend curves over the months, compared to several clinical cases of the disease. The objective of this study was to monitor the SARS-CoV-2 in environmental samples collected in different sites in a metropolitan area of Porto Alegre, Southern Brazil. During 10 months from 2020 to 2021, 300 samples were collected weekly and biweekly from nine points located in 3 cities: one point from a wastewater treatment plant (WWTP) in São Leopoldo (fortnightly collection), two points in Dilúvio Stream in Porto Alegre (fortnightly collection), two points in Pampa and Luiz Rau Streams (weekly collection), and two points in public fountains (fortnightly collection) in Novo Hamburgo. After collection, samples were concentrated by ultracentrifugation, and viral nucleic acids were extracted using MagMax® Core Nucleic Acid Purifications kits and submitted to RT-qPCR, using E, N1, and N2 gene targets of SARS-CoV-2. Only 7% (3/41) samples from public fountains were positive, with a mean viral load (VL) of SARS-CoV-2 RNA of 5.02 × 101 gc/l (2.41~8.59 × 101 gc/l), while the streams had average VL of 7.43 × 105 gc/l (Pampa), 7.06 × 105 gc/l (Luiz Rau), 2.01 × 105 gc/l (Dilúvio), and 4.46 × 105 cg/l (WWTP). The results showed varying levels of viral presence in different sample types, with a demonstrated correlation between environmental viral load and clinical COVID-19 cases. These findings contribute to understanding virus persistence and transmission pathways in the environment. Continuous monitoring, especially in less developed regions, is crucial for early detection of vaccine resistance, new variants, and potential COVID-19 resurgence.
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Affiliation(s)
- Leticia Batista Dutra
- Laboratory of Molecular Microbiology and Cytotoxicity, Health Sciences Institute, Feevale University, ERS 239 n° 2755, Novo Hamburgo, RS, CEP 93352-000, Brazil
| | - Janaína Francieli Stein
- Laboratory of Molecular Microbiology and Cytotoxicity, Health Sciences Institute, Feevale University, ERS 239 n° 2755, Novo Hamburgo, RS, CEP 93352-000, Brazil
| | - Bruna Seixas da Rocha
- Laboratory of Molecular Microbiology and Cytotoxicity, Health Sciences Institute, Feevale University, ERS 239 n° 2755, Novo Hamburgo, RS, CEP 93352-000, Brazil
| | - Andresa Berger
- Division of Laboratories, Henrique Luis Roessler State Foundation for Environmental Protection (FEPAM), Porto Alegre, RS, CEP 90020-021, Brazil
| | - Beatriz Andrade de Souza
- Division of Laboratories, Henrique Luis Roessler State Foundation for Environmental Protection (FEPAM), Porto Alegre, RS, CEP 90020-021, Brazil
| | - Bruno Aschidamini Prandi
- Virology Laboratory, Institute for Basic Health Sciences, Federal University of Rio Grande do Sul, Porto Alegre, RS, CEP 90050-170, Brazil
| | - Arthur Tonietto Mangini
- Virology Laboratory, Institute for Basic Health Sciences, Federal University of Rio Grande do Sul, Porto Alegre, RS, CEP 90050-170, Brazil
| | - André Jarenkow
- State Center for Health Surveillance, Rio Grande do Sul State Health Department, Porto Alegre, RS, CEP 90119-900, Brazil
| | - Aline Alves Scarpellini Campos
- State Center for Health Surveillance, Rio Grande do Sul State Health Department, Porto Alegre, RS, CEP 90119-900, Brazil
| | - Fernando Mainardi Fan
- Hydraulic Research Institute, Federal University of Rio Grande do Sul, Porto Alegre, RS, CEP 91501-970, Brazil
| | | | - Katia Helena Lipp-Nissinen
- Division of Laboratories, Henrique Luis Roessler State Foundation for Environmental Protection (FEPAM), Porto Alegre, RS, CEP 90020-021, Brazil
| | - Manuel Rodrigues Loncan
- Division of Laboratories, Henrique Luis Roessler State Foundation for Environmental Protection (FEPAM), Porto Alegre, RS, CEP 90020-021, Brazil
| | - Matheus Ribeiro Augusto
- Center of Engineering, Modelling and Applied Social Sciences (CECS), Federal University of ABC (UFABC), Santo Andre, SP, CEP 09210-580, Brazil
| | - Ana Cláudia Franco
- Virology Laboratory, Institute for Basic Health Sciences, Federal University of Rio Grande do Sul, Porto Alegre, RS, CEP 90050-170, Brazil
| | - Rodrigo de Freitas Bueno
- Center of Engineering, Modelling and Applied Social Sciences (CECS), Federal University of ABC (UFABC), Santo Andre, SP, CEP 09210-580, Brazil
| | - Caroline Rigotto
- Laboratory of Molecular Microbiology and Cytotoxicity, Health Sciences Institute, Feevale University, ERS 239 n° 2755, Novo Hamburgo, RS, CEP 93352-000, Brazil.
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Tian Y, Zhang W, Duan L, McDonald W, Osgood N. Comparison of pretrained transformer-based models for influenza and COVID-19 detection using social media text data in Saskatchewan, Canada. Front Digit Health 2023; 5:1203874. [PMID: 37448834 PMCID: PMC10338115 DOI: 10.3389/fdgth.2023.1203874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Accepted: 06/02/2023] [Indexed: 07/15/2023] Open
Abstract
Background The use of social media data provides an opportunity to complement traditional influenza and COVID-19 surveillance methods for the detection and control of outbreaks and informing public health interventions. Objective The first aim of this study is to investigate the degree to which Twitter users disclose health experiences related to influenza and COVID-19 that could be indicative of recent plausible influenza cases or symptomatic COVID-19 infections. Second, we seek to use the Twitter datasets to train and evaluate the classification performance of Bidirectional Encoder Representations from Transformers (BERT) and variant language models in the context of influenza and COVID-19 infection detection. Methods We constructed two Twitter datasets using a keyword-based filtering approach on English-language tweets collected from December 2016 to December 2022 in Saskatchewan, Canada. The influenza-related dataset comprised tweets filtered with influenza-related keywords from December 13, 2016, to March 17, 2018, while the COVID-19 dataset comprised tweets filtered with COVID-19 symptom-related keywords from January 1, 2020, to June 22, 2021. The Twitter datasets were cleaned, and each tweet was annotated by at least two annotators as to whether it suggested recent plausible influenza cases or symptomatic COVID-19 cases. We then assessed the classification performance of pre-trained transformer-based language models, including BERT-base, BERT-large, RoBERTa-base, RoBERT-large, BERTweet-base, BERTweet-covid-base, BERTweet-large, and COVID-Twitter-BERT (CT-BERT) models, on each dataset. To address the notable class imbalance, we experimented with both oversampling and undersampling methods. Results The influenza dataset had 1129 out of 6444 (17.5%) tweets annotated as suggesting recent plausible influenza cases. The COVID-19 dataset had 924 out of 11939 (7.7%) tweets annotated as inferring recent plausible COVID-19 cases. When compared against other language models on the COVID-19 dataset, CT-BERT performed the best, supporting the highest scores for recall (94.8%), F1(94.4%), and accuracy (94.6%). For the influenza dataset, BERTweet models exhibited better performance. Our results also showed that applying data balancing techniques such as oversampling or undersampling method did not lead to improved model performance. Conclusions Utilizing domain-specific language models for monitoring users' health experiences related to influenza and COVID-19 on social media shows improved classification performance and has the potential to supplement real-time disease surveillance.
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Kumar M. Spectrum of environmental surveillance of SARS-CoV-2 fragments: Questions, quests, and conquest. CURRENT OPINION IN ENVIRONMENTAL SCIENCE & HEALTH 2022; 30:100401. [PMID: 36339883 PMCID: PMC9617644 DOI: 10.1016/j.coesh.2022.100401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
This works examines the entire spectrum of 'Environmental Surveillance (EnvSurv)' of SARS-CoV-2 fragments i.e. the questions, quests, and conquests of the technology since early year 2020. The prime focus of the present work to document the journey with achieved objectives and remaining ambitions associated with the technology. Despite the EnvSurv may be regarded as the techniques, which rather achieved more than expected, will it win the struggle for its existence or lose its way once the pandemic and fear associated with it completely fades. Pertaining to this discussions, major researched topics were investigated, followed by enlisting of ten bullets of the past experiences along with corresponding challenges, and finally key targets for the techniques are enlisted. The article targets to be a simple guide of the journey of EnvSur in terms of its effectiveness for treatment, infectivity, monitoring & estimation (TIME) till date.
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Affiliation(s)
- Manish Kumar
- Sustainability Cluster, School of Engineering, Enery Agcres, University of Petroleum & Energy Studies, Dehradun, Uttarakhand, 248007, India
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4
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Magana-Arachchi DN, Wanigatunge RP, Vithanage MS. Can infectious modelling be applicable globally - lessons from COVID 19. CURRENT OPINION IN ENVIRONMENTAL SCIENCE & HEALTH 2022; 30:100399. [PMID: 36320817 PMCID: PMC9612404 DOI: 10.1016/j.coesh.2022.100399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 09/14/2022] [Accepted: 10/18/2022] [Indexed: 06/16/2023]
Abstract
Contagious diseases are needed to be monitored to prevent spreading within communities. Timely advice and predictions are necessary to overcome the consequences of those epidemics. Currently, emphasis has been placed on computer modelling to achieve the needed forecasts, the best example being the COVID-19 pandemic. Scientists used various models to determine how diverse sociodemographic factors correlated and influenced COVID-19 Global transmission and demonstrated the utility of computer models as tools in disease management. However, as modelling is done with assumptions with set rules, calculating uncertainty quantification is essential in infectious modelling when reporting the results and trustfully describing the limitations. This article summarizes the infectious disease modelling strategies, challenges, and global applicability by focusing on the COVID-19 pandemic.
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Affiliation(s)
- Dhammika N Magana-Arachchi
- Molecular Microbiology and Human Diseases Unit, National Institute of Fundamental Studies, Kandy, Sri Lanka
| | - Rasika P Wanigatunge
- Department of Plant and Molecular Biology, Faculty of Science, University of Kelaniya, Sri Lanka
| | - Meththika S Vithanage
- Ecosphere Resilience Research Centre, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda, Sri Lanka
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Islam A, Hossen F, Rahman A, Sultana KF, Hasan MN, Haque A, Sosa-Hernández JE, Oyervides-Muñoz MA, Parra-Saldívar R, Ahmed T, Islam T, Dhama K, Sangkham S, Bahadur NM, Reza HM, Jakariya, Al Marzan A, Bhattacharya P, Sonne C, Ahmed F. An opinion on Wastewater-Based Epidemiological Monitoring (WBEM) with Clinical Diagnostic Test (CDT) for detecting high-prevalence areas of community COVID-19 Infections. CURRENT OPINION IN ENVIRONMENTAL SCIENCE & HEALTH 2022; 31:100396. [PMID: 36320818 PMCID: PMC9612100 DOI: 10.1016/j.coesh.2022.100396] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 09/26/2022] [Accepted: 09/28/2022] [Indexed: 02/17/2024]
Abstract
Wastewater-Based Epidemiological Monitoring (WBEM) is an efficient surveillance tool during the COVID-19 pandemic as it meets all requirements of a complete monitoring system including early warning, tracking the current trend, prevalence of the disease, detection of genetic diversity as well asthe up-surging SARS-CoV-2 new variants with mutations from the wastewater samples. Subsequently, Clinical Diagnostic Test is widely acknowledged as the global gold standard method for disease monitoring, despite several drawbacks such as high diagnosis cost, reporting bias, and the difficulty of tracking asymptomatic patients (silent spreaders of the COVID-19 infection who manifest nosymptoms of the disease). In this current reviewand opinion-based study, we first propose a combined approach) for detecting COVID-19 infection in communities using wastewater and clinical sample testing, which may be feasible and effective as an emerging public health tool for the long-term nationwide surveillance system. The viral concentrations in wastewater samples can be used as indicatorsto monitor ongoing SARS-CoV-2 trends, predict asymptomatic carriers, and detect COVID-19 hotspot areas, while clinical sampleshelp in detecting mostlysymptomaticindividuals for isolating positive cases in communities and validate WBEM protocol for mass vaccination including booster doses for COVID-19.
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Affiliation(s)
- Aminul Islam
- COVID-19 Diagnostic Lab, Department of Microbiology, Noakhali Science and Technology University, Noakhali-3814, Bangladesh
- Advanced Molecular Lab, Department of Microbiology, President Abdul Hamid Medical College, Karimganj, Kishoreganj, Bangladesh
| | - Foysal Hossen
- COVID-19 Diagnostic Lab, Department of Microbiology, Noakhali Science and Technology University, Noakhali-3814, Bangladesh
| | - Arifur Rahman
- COVID-19 Diagnostic Lab, Department of Microbiology, Noakhali Science and Technology University, Noakhali-3814, Bangladesh
| | - Khandokar Fahmida Sultana
- COVID-19 Diagnostic Lab, Department of Microbiology, Noakhali Science and Technology University, Noakhali-3814, Bangladesh
| | - Mohammad Nayeem Hasan
- Department of Statistics, Shahjalal University of Science & Technology, Sylhet, Bangladesh
- Joint Rohingya Response Program, Food for the Hungry, Cox's Bazar, Bangladesh
| | - Atiqul Haque
- Key Lab of Animal Epidemiology and Zoonoses of Ministry of Agriculture and Rural Affairs, College of Veterinary Medicine, China Agricultural University, Beijing, China
- Department of Microbiology, Faculty of Veterinary and Animal Science, Hajee Mohammad Danesh Science and Technology University, Dinajpur-5200, Bangladesh
| | | | | | | | - Tanvir Ahmed
- Department of Civil Engineering, Bangladesh University of Engineering and Technology, Dhaka-1000, Bangladesh
| | | | - Kuldeep Dhama
- Indian Veterinary Research Institute, Izzatnagar-243 122, Bareilly, Uttar Pradesh, India
| | - Sarawut Sangkham
- Department of Environmental Health, School of Public Health, University of Phayao, Muang District, 56000, Phayao, Thailand
| | - Newaz Mohammed Bahadur
- Department of Applied Chemistry and Chemical Engineering, Noakhali Science and TechnologyUniversity, Noakhali-3814, Bangladesh
| | - Hasan Mahmud Reza
- Department of Pharmaceutical Sciences, North South University, Bashundhara, Dhaka, 1229, Bangladesh
| | - Jakariya
- Department of Environmental Science and Management, North South University, Bashundhara, Dhaka-1229, Bangladesh
| | - Abdullah Al Marzan
- Department of Biochemistry and Molecular Biology, Shahjalal University of Science and Technology, Sylhet, 3114, Bangladesh
| | - Prosun Bhattacharya
- COVID-19 Research@KTH, Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE 114 28 Stockholm, Sweden
| | - Christian Sonne
- Department of Bioscience, Arctic Research Centre (ARC), Faculty of Science and Technology, Aarhus University, Frederiksborgvej 399, PO Box 358, 4000 Roskilde, Denmark
| | - Firoz Ahmed
- COVID-19 Diagnostic Lab, Department of Microbiology, Noakhali Science and Technology University, Noakhali-3814, Bangladesh
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6
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Hyllestad S, Myrmel M, Lomba JAB, Jordhøy F, Schipper SK, Amato E. Effectiveness of environmental surveillance of SARS-CoV-2 as an early warning system during the first year of the COVID-19 pandemic: a systematic review. JOURNAL OF WATER AND HEALTH 2022; 20:1223-1242. [PMID: 36044191 DOI: 10.2166/wh.2022.115] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Since infected persons shed SARS-CoV-2 in faeces before symptoms appear, environmental surveillance (ES) may serve as an early warning system (EWS) for COVID-19 and new variants of concern. The ES of SARS-CoV-2 has been widely reviewed; however, its effectiveness as an EWS for SARS-CoV-2 in terms of timeliness, sensitivity and specificity has not been systematically assessed. We conducted a systematic review to identify and synthesise evidence on the ES of SARS-CoV-2 as an EWS to evaluate the added value for public health. Of 1,014 studies identified, we considered 29 for a qualitative synthesis of the timeliness of ES as an EWS for COVID-19, while six studies were assessed for the ability to detect new variants and two for both aims. The synthesis indicates ES may serve as an EWS of 1-2 weeks. ES could complement clinical surveillance for SARS-CoV-2; however, its cost-benefit value for public health decisions needs to be assessed based on the stage of the pandemic and resources available. Studies focusing methodological knowledge gaps as well as how to use and interpret ES signals for public health actions are needed, as is the sharing of knowledge within countries/areas with long experience of such surveillance.
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Affiliation(s)
- Susanne Hyllestad
- Department for Infection Control and Preparedness, Norwegian Institute of Public Health (NIPH), Oslo, Norway E-mail:
| | - Mette Myrmel
- Faculty of Veterinary Medicine, Virology Unit, Norwegian University of Life Science (NMBU), Oslo, Norway
| | - Jose Antonio Baz Lomba
- Department of Environmental Chemistry and Technology, Norwegian Institute for Water Research (NIVA), Oslo, Norway
| | - Fredrik Jordhøy
- Department for Infection Control and Preparedness, Norwegian Institute of Public Health (NIPH), Oslo, Norway E-mail:
| | - Svanhild Kjørsvik Schipper
- Department for Infection Control and Preparedness, Norwegian Institute of Public Health (NIPH), Oslo, Norway E-mail:
| | - Ettore Amato
- Department for Infection Control and Preparedness, Norwegian Institute of Public Health (NIPH), Oslo, Norway E-mail:
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7
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Vadiati M, Beynaghi A, Bhattacharya P, Bandala ER, Mozafari M. Indirect effects of COVID-19 on the environment: How deep and how long? THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 810:152255. [PMID: 34896489 PMCID: PMC8660132 DOI: 10.1016/j.scitotenv.2021.152255] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2020] [Revised: 12/02/2021] [Accepted: 12/04/2021] [Indexed: 05/30/2023]
Abstract
Although the World Health Organization (WHO) announcement released in early March 2020 stated there is no proven evidence that the COVID-19 virus can survive in drinking water or sewage, there has been some recent evidence that coronaviruses can survive in low-temperature environments and in groundwater for more than a week. Some studies have also found SARS-CoV-2 genetic materials in raw municipal wastewater, which highlights a potential avenue for viral spread. A lack of information about the presence and spread of COVID-19 in the environment may lead to decisions based on local concerns and prevent the integration of the prevalence of SARS-CoV-2 into the global water cycle. Several studies have optimistically assumed that coronavirus has not yet affected water ecosystems, but this assumption may increase the possibility of subsequent global water issues. More studies are needed to provide a comprehensive picture of COVID-19 occurrence and outbreak in aquatic environments and more specifically in water resources. As scientific efforts to report reliable news, conduct rapid and precise research on COVID-19, and advocate for scientists worldwide to overcome this crisis increase, more information is required to assess the extent of the effects of the COVID-19 pandemic on the environment. The goals of this study are to estimate the extent of the environmental effects of the pandemic, as well as identify related knowledge gaps and avenues for future research.
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Affiliation(s)
- Meysam Vadiati
- Hubert H. Humphrey Fellowship Program, Global Affairs, University of California, Davis, 10 College Park, 95616 Davis, CA, USA
| | - Ali Beynaghi
- Office of Sustainability, Amirkabir University of Technology, Tehran, Iran
| | - Prosun Bhattacharya
- COVID-19 Research @KTH, Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE-100 44 Stockholm, Sweden
| | - Erick R Bandala
- Division of Hydrological Sciences, Desert Research Institute, 755 E. Flamingo Road, 89119 Las Vegas, NV, USA
| | - Masoud Mozafari
- Department of Tissue Engineering & Regenerative Medicine, Faculty of Advanced Technologies in Medicine, Iran University of Medical Sciences, Tehran, Iran.
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8
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Kumar M, Kuroda K, Joshi M, Bhattacharya P, Barcelo D. First comparison of conventional activated sludge versus root-zone treatment for SARS-CoV-2 RNA removal from wastewaters: Statistical and temporal significance. CHEMICAL ENGINEERING JOURNAL (LAUSANNE, SWITZERLAND : 1996) 2021; 425:130635. [PMID: 34149304 PMCID: PMC8200644 DOI: 10.1016/j.cej.2021.130635] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Revised: 04/26/2021] [Accepted: 05/30/2021] [Indexed: 05/05/2023]
Abstract
In the initial pandemic phase, effluents from wastewater treatment facilities were reported mostly free from Severe Acute Respiratory Coronavirus 2 (SARS-CoV-2) RNA, and thus conventional wastewater treatments were generally considered effective. However, there is a lack of first-hand data on i) comparative efficacy of various treatment processes for SARS-CoV-2 RNA removal; and ii) temporal variations in the removal efficacy of a given treatment process in the backdrop of active COVID-19 cases. This work provides a comparative account of the removal efficacy of conventional activated sludge (CAS) and root zone treatments (RZT) based on weekly wastewater surveillance data, consisting of forty-four samples, during a two-month period. The average genome concentration was higher in the inlets of CAS-based wastewater treatment plant (WWTP) in the Sargasan ward (1.25 × 103 copies/ L), than that of RZT-based WWTP (7.07 × 102 copies/ L) in an academic institution campus of Gandhinagar, Gujarat, India. ORF 1ab and S genes appeared to be more sensitive to treatment i.e., significantly reduced (p < 0.05) than N genes (p > 0.05). CAS treatment exhibited better RNA removal efficacy (p = 0.014) than RZT (p = 0.032). Multivariate analyses suggested that the effective genome concentration should be calculated based on the presence/absence of multiple genes. The present study stresses that treated effluents are not always free from SARS-CoV-2 RNA, and the removal efficacy of a given WWTP is prone to exhibit temporal variability owing to variations in active COVID-19 cases in the vicinity and genetic material accumulation over the time. Disinfection seems less effective than the adsorption and coagulation processes for SARS-CoV-2 removal. Results stress the need for further research on mechanistic insight on SARS-CoV-2 removal through various treatment processes taking solid-liquid partitioning into account.
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Affiliation(s)
- Manish Kumar
- Discipline of Earth Science, Indian Institute of Technology Gandhinagar, Gujarat 382 355, India
- Kiran C Patel Centre for Sustainable Development, Indian Institute of Technology Gandhinagar, Gujarat, India
| | - Keisuke Kuroda
- Department of Environmental and Civil Engineering, Toyama Prefectural University, Imizu 939 0398, Japan
| | - Madhvi Joshi
- Gujarat Biotechnology Research Centre (GBRC), Sector- 11, Gandhinagar, Gujarat 382 011, India
| | - Prosun Bhattacharya
- Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, SE-10044 Stockholm, Sweden
| | - Damia Barcelo
- Institute of Environmental Assessment and Water Research (IDAEA-CSIC), Barcelona, and Catalan Institute for Water Research (ICRA)-CERCA, Girona, Spain
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9
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Meng X, Wang X, Meng S, Wang Y, Liu H, Liang D, Fan W, Min H, Huang W, Chen A, Zhu H, Peng G, Liu J, Qiu Z, Wang T, Yang L, Wei Y, Huo P, Zhang D, Liu Y. A Global Overview of SARS-CoV-2 in Wastewater: Detection, Treatment, and Prevention. ACS ES&T WATER 2021; 1:2174-2185. [PMID: 37566346 PMCID: PMC8457323 DOI: 10.1021/acsestwater.1c00146] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2021] [Indexed: 05/06/2023]
Abstract
A novel coronavirus (SARS-CoV-2) causing corona virus disease 2019 (COVID-19) has attracted global attention due to its highly infectious and pathogenic properties. Most of current studies focus on aerosols released from infected individuals, but the presence of SARS-CoV-2 in wastewater also should be examined. In this review, we used bibliometrics to statistically evaluate the importance of water-related issues in the context of COVID-19. The results show that the levels and transmission possibilities of SARS-CoV-2 in wastewater are the main concerns, followed by potential secondary pollution by the intensive use of disinfectants, sludge disposal, and the personal safety of workers. The presence of SARS-CoV-2 in wastewater requires more attention during the COVID-19 pandemic. Thus, the most effective techniques, i.e., wastewater-based epidemiology and quantitative microbial risk assessment, for virus surveillance in wastewater are systematically analyzed. We further explicitly review and analyze the successful operation of a sewage treatment plant in Huoshenshan Hospital in China as an example and reference for other sewage treatment systems to properly ensure discharge safety and tackle the COVID-19 pandemic. This review offers deeper insight into the prevention and control of SARS-CoV-2 and similar viruses in the post-COVID-19 era from a wastewater perspective.
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Affiliation(s)
- Xianghao Meng
- School of Space and Environment, Beihang
University, Beijing 100191, P. R. China
| | - Xuye Wang
- School of Space and Environment, Beihang
University, Beijing 100191, P. R. China
| | - Shujuan Meng
- School of Space and Environment, Beihang
University, Beijing 100191, P. R. China
| | - Ying Wang
- School of Space and Environment, Beihang
University, Beijing 100191, P. R. China
| | - Hongju Liu
- School of Space and Environment, Beihang
University, Beijing 100191, P. R. China
| | - Dawei Liang
- School of Space and Environment, Beihang
University, Beijing 100191, P. R. China
| | - Wenhong Fan
- School of Space and Environment, Beihang
University, Beijing 100191, P. R. China
| | - Hongping Min
- China Construction Third Bureau Green
Industry Investment Company, Ltd., Wuhan 430035, P. R.
China
| | - Wenhai Huang
- China Construction Third Bureau Green
Industry Investment Company, Ltd., Wuhan 430035, P. R.
China
| | - Anming Chen
- China Construction Third Bureau Green
Industry Investment Company, Ltd., Wuhan 430035, P. R.
China
| | - Haijun Zhu
- China Construction Third Bureau Green
Industry Investment Company, Ltd., Wuhan 430035, P. R.
China
| | - Guanping Peng
- China Construction Third Bureau Green
Industry Investment Company, Ltd., Wuhan 430035, P. R.
China
| | - Jun Liu
- China Construction Third Bureau Green
Industry Investment Company, Ltd., Wuhan 430035, P. R.
China
| | - Zhenhuan Qiu
- China Construction Third Bureau Green
Industry Investment Company, Ltd., Wuhan 430035, P. R.
China
| | - Tao Wang
- China Construction Third Bureau Green
Industry Investment Company, Ltd., Wuhan 430035, P. R.
China
| | - Linyan Yang
- School of Resources and Environmental Engineering,
East China University of Science and Technology, Shanghai
200237, P. R. China
| | - Yuan Wei
- State Key Laboratory of Environmental Criteria and
Risk Assessment, Chinese Research Academy of Environmental
Science, Beijing 100012, P. R. China
| | - Peishu Huo
- School of Environment, Tsinghua
University, Beijing 100084, P. R. China
| | - Dayi Zhang
- School of Environment, Tsinghua
University, Beijing 100084, P. R. China
| | - Yu Liu
- School of Civil and Environmental Engineering,
Nanyang Technological University, 50 Nanyang Avenue,
Singapore 639798
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10
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Girón-Navarro R, Linares-Hernández I, Castillo-Suárez LA. The impact of coronavirus SARS-CoV-2 (COVID-19) in water: potential risks. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:52651-52674. [PMID: 34453253 PMCID: PMC8397333 DOI: 10.1007/s11356-021-16024-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2021] [Accepted: 08/14/2021] [Indexed: 06/02/2023]
Abstract
This review summarizes research data on SARS-CoV-2 in water environments. A literature survey was conducted using the electronic databases Science Direct, Scopus, and Springer. This complete research included and discussed relevant studies that involve the (1) introduction, (2) definition and features of coronavirus, (2.1) structure and classification, (3) effects on public health, (4) transmission, (5) detection methods, (6) impact of COVID-19 on the water sector (drinking water, cycle water, surface water, wastewater), (6.5) wastewater treatment, and (7) future trends. The results show contamination of clean water sources, and community drinking water is vulnerable. Additionally, there is evidence that sputum, feces, and urine contain SARS-CoV-2, which can maintain its viability in sewage and the urban-rural water cycle to move towards seawater or freshwater; thus, the risk associated with contracting COVID-19 from contact with untreated water or inadequately treated wastewater is high. Moreover, viral loads have been detected in surface water, although the risk is lower for countries that efficiently treat their wastewater. Further investigation is immediately required to determine the persistence and mobility of SARS-CoV-2 in polluted water and sewage as well as the possible potential of disease transmission via drinking water. Conventional wastewater treatment systems have been shown to be effective in removing the virus, which plays an important role in pandemic control. Monitoring of this virus in water is extremely important as it can provide information on the prevalence and distribution of the COVID-19 pandemic in different communities as well as possible infection dynamics to prevent future outbreaks.
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Affiliation(s)
- Rocío Girón-Navarro
- Instituto Interamericano de Tecnología y Ciencias del Agua (IITCA), Universidad Autónoma del Estado de México, Km 14.5 carretera Toluca-Atlacomulco, C.P, 50200, Toluca, Estado de México, Mexico
| | - Ivonne Linares-Hernández
- Instituto Interamericano de Tecnología y Ciencias del Agua (IITCA), Universidad Autónoma del Estado de México, Km 14.5 carretera Toluca-Atlacomulco, C.P, 50200, Toluca, Estado de México, Mexico.
| | - Luis Antonio Castillo-Suárez
- Instituto Interamericano de Tecnología y Ciencias del Agua (IITCA), Universidad Autónoma del Estado de México, Km 14.5 carretera Toluca-Atlacomulco, C.P, 50200, Toluca, Estado de México, Mexico.
- Consejo Mexiquense de Ciencia y Tecnología - COMECYT, Diagonal Alfredo del Mazo 198 y 103, Guadalupe y Club Jardín, C.P. 50010, Toluca de Lerdo, Estado de México, México.
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11
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Anand U, Bianco F, Suresh S, Tripathi V, Núñez-Delgado A, Race M. SARS-CoV-2 and other viruses in soil: An environmental outlook. ENVIRONMENTAL RESEARCH 2021; 198:111297. [PMID: 33971130 PMCID: PMC8102436 DOI: 10.1016/j.envres.2021.111297] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 04/30/2021] [Accepted: 05/01/2021] [Indexed: 05/15/2023]
Abstract
In the present review, the authors shed light on the SARS-CoV-2 impact, persistence, and monitoring in the soil environment. With this purpose, several aspects have been deepened: i) viruses in soil ecosystems; ii) direct and indirect impact on the soil before and after the pandemic, and iii) methods for quantification of viruses and SARS-CoV-2 monitoring in soil. Viruses are present in soil (i.e. up to 417 × 107 viruses per g TS-1 in wetlands) and can affect the behavior and ecology of other life forms (e.g. bacteria), which are remarkably important for maintaining environmental equilibrium. Also, SARS-CoV-2 can be found in soil (i.e. up to 550 copies·g-1). Considering that the SARS-CoV-2 is very recent, poor knowledge is available in the literature on persistence in the soil and reference has been made to coronaviruses and other families of viruses. For instance, the survival of enveloped viruses (e.g. SARS-CoV) can reach 90 days in soils with 10% of moisture content at ambient. In such a context, the possible spread of the SARS-CoV-2 in the soil was evaluated by analyzing the possible contamination routes.
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Affiliation(s)
- Uttpal Anand
- Department of Life Sciences, National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, 84105, Israel
| | - Francesco Bianco
- Department of Civil and Mechanical Engineering, University of Cassino and Southern Lazio, Via Di Biasio 43, 03043, Cassino, Italy
| | - S Suresh
- Department of Chemical Engineering, Maulana Azad National Institute of Technology, Bhopal, 462 003, Madhya Pradesh, India
| | - Vijay Tripathi
- Department of Molecular and Cellular Engineering, Jacob Institute of Biotechnology and Bioengineering, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, 211007, India
| | - Avelino Núñez-Delgado
- Department Soil Science and Agricultural Chemistry, Engineering Polytechnic School, Campus Univ. Lugo, Univ. Santiago de Compostela, 27002, Spain
| | - Marco Race
- Department of Civil and Mechanical Engineering, University of Cassino and Southern Lazio, Via Di Biasio 43, 03043, Cassino, Italy.
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12
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Ahmed F, Islam MA, Kumar M, Hossain M, Bhattacharya P, Islam MT, Hossen F, Hossain MS, Islam MS, Uddin MM, Islam MN, Bahadur NM, Didar-Ul-Alam M, Reza HM, Jakariya M. First detection of SARS-CoV-2 genetic material in the vicinity of COVID-19 isolation Centre in Bangladesh: Variation along the sewer network. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021. [PMID: 33652314 DOI: 10.1101/2020.09.14.20194696] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
We made the first and successful attempt to detect SARS-CoV-2 genetic material in the vicinity wastewaters of an isolation centre i.e. Shaheed Bhulu Stadium, situated at Noakhali, Southeastern Bangladesh. Owing to the fact that isolation centre, in general, always contained a constant number of 200 COVID-19 patients, the prime objective of the study was to check if several drains carrying RNA of coronavirus are actually getting diluted or accumulated along with the sewage network. Our finding suggested that while the temporal variation of the genetic load decreased in small drains over the span of 50 days, the main sewer exhibited accumulation of SARS-CoV-2 RNA. Other interesting finding displays that probably distance of sampling location in meters is not likely to have a significant impact on the detected gene concentration, although the quantity of the RNA extracted in the downstream of the drain was higher. These findings are of immense value from the perspective of wastewater surveillance of COVID-19, as they largely imply that we do not need to monitor every wastewater system, and probably major drains monitoring may illustrate the city health. Perhaps, we are reporting the accumulation of SARS-CoV-2 genetic material along with the sewer network i.e. from primary to tertiary drains. The study sought further data collection in this line to simulate conditions prevailed in most of the developing countries and to shed further light on decay/accumulation processes of the genetic load of the SARS-COV-2.
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Affiliation(s)
- Firoz Ahmed
- Department of Microbiology, Noakhali Science and Technology University, Noakhali 3814, Bangladesh.
| | - Md Aminul Islam
- Department of Microbiology, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Manish Kumar
- Discipline of Earth Science, Indian Institute of Technology, Gandhinagar, Gujarat 382 355, India.
| | - Maqsud Hossain
- Department of Biochemistry and Microbiology, North South University, NSU Genome Research Institute (NGRI), North South University, Bashundhara, Dhaka 1229, Bangladesh
| | - Prosun Bhattacharya
- COVID-19 Research@KTH, Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE-10044 Stockholm, Sweden
| | - Md Tahmidul Islam
- COVID-19 Research@KTH, Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE-10044 Stockholm, Sweden
| | - Foysal Hossen
- Department of Microbiology, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Md Shahadat Hossain
- Department of Biotechnology and Genetic Engineering, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Md Sydul Islam
- Department of Applied Chemistry and Chemical Engineering, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Md Main Uddin
- Department of Biotechnology and Genetic Engineering, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Md Nur Islam
- Department of Biotechnology and Genetic Engineering, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Newaz Mohammed Bahadur
- Department of Applied Chemistry and Chemical Engineering, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Md Didar-Ul-Alam
- Professor and Honorable Vice-Chancellor, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Hasan Mahmud Reza
- Department of Pharmaceutical Sciences, North South University, Bashundhara, Dhaka 1229, Bangladesh
| | - Md Jakariya
- Department of Environmental Science and Management, North South University, Bashundhara, Dhaka 1229, Bangladesh.
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13
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Ahmed F, Islam MA, Kumar M, Hossain M, Bhattacharya P, Islam MT, Hossen F, Hossain MS, Islam MS, Uddin MM, Islam MN, Bahadur NM, Didar-Ul-Alam M, Reza HM, Jakariya M. First detection of SARS-CoV-2 genetic material in the vicinity of COVID-19 isolation Centre in Bangladesh: Variation along the sewer network. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 776:145724. [PMID: 33652314 PMCID: PMC7870435 DOI: 10.1016/j.scitotenv.2021.145724] [Citation(s) in RCA: 71] [Impact Index Per Article: 23.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2020] [Revised: 02/02/2021] [Accepted: 02/04/2021] [Indexed: 04/14/2023]
Abstract
We made the first and successful attempt to detect SARS-CoV-2 genetic material in the vicinity wastewaters of an isolation centre i.e. Shaheed Bhulu Stadium, situated at Noakhali, Southeastern Bangladesh. Owing to the fact that isolation centre, in general, always contained a constant number of 200 COVID-19 patients, the prime objective of the study was to check if several drains carrying RNA of coronavirus are actually getting diluted or accumulated along with the sewage network. Our finding suggested that while the temporal variation of the genetic load decreased in small drains over the span of 50 days, the main sewer exhibited accumulation of SARS-CoV-2 RNA. Other interesting finding displays that probably distance of sampling location in meters is not likely to have a significant impact on the detected gene concentration, although the quantity of the RNA extracted in the downstream of the drain was higher. These findings are of immense value from the perspective of wastewater surveillance of COVID-19, as they largely imply that we do not need to monitor every wastewater system, and probably major drains monitoring may illustrate the city health. Perhaps, we are reporting the accumulation of SARS-CoV-2 genetic material along with the sewer network i.e. from primary to tertiary drains. The study sought further data collection in this line to simulate conditions prevailed in most of the developing countries and to shed further light on decay/accumulation processes of the genetic load of the SARS-COV-2.
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Affiliation(s)
- Firoz Ahmed
- Department of Microbiology, Noakhali Science and Technology University, Noakhali 3814, Bangladesh.
| | - Md Aminul Islam
- Department of Microbiology, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Manish Kumar
- Discipline of Earth Science, Indian Institute of Technology, Gandhinagar, Gujarat 382 355, India.
| | - Maqsud Hossain
- Department of Biochemistry and Microbiology, North South University, NSU Genome Research Institute (NGRI), North South University, Bashundhara, Dhaka 1229, Bangladesh
| | - Prosun Bhattacharya
- COVID-19 Research@KTH, Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE-10044 Stockholm, Sweden
| | - Md Tahmidul Islam
- COVID-19 Research@KTH, Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE-10044 Stockholm, Sweden
| | - Foysal Hossen
- Department of Microbiology, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Md Shahadat Hossain
- Department of Biotechnology and Genetic Engineering, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Md Sydul Islam
- Department of Applied Chemistry and Chemical Engineering, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Md Main Uddin
- Department of Biotechnology and Genetic Engineering, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Md Nur Islam
- Department of Biotechnology and Genetic Engineering, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Newaz Mohammed Bahadur
- Department of Applied Chemistry and Chemical Engineering, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Md Didar-Ul-Alam
- Professor and Honorable Vice-Chancellor, Noakhali Science and Technology University, Noakhali 3814, Bangladesh
| | - Hasan Mahmud Reza
- Department of Pharmaceutical Sciences, North South University, Bashundhara, Dhaka 1229, Bangladesh
| | - Md Jakariya
- Department of Environmental Science and Management, North South University, Bashundhara, Dhaka 1229, Bangladesh.
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14
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Anand U, Cabreros C, Mal J, Ballesteros F, Sillanpää M, Tripathi V, Bontempi E. Novel coronavirus disease 2019 (COVID-19) pandemic: From transmission to control with an interdisciplinary vision. ENVIRONMENTAL RESEARCH 2021; 197:111126. [PMID: 33831411 PMCID: PMC8020611 DOI: 10.1016/j.envres.2021.111126] [Citation(s) in RCA: 60] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2021] [Revised: 03/09/2021] [Accepted: 04/01/2021] [Indexed: 05/06/2023]
Abstract
There a lot of review papers addressing specific COVID-19 research sectors, then devoted to specialists. This review provides an in-depth summary of the available information about SARS-CoV-2 and the corresponding disease (also known as COVID-19), with a multi-disciplinary approach. After the paper introduction, the first section treats the virological characteristics of SARS-CoV-2, the medical implications of the infection, and the human susceptivity. Great attention is devoted to the factor affecting the infection routes, distinguishing among the possible human-to-human, environmental-to-human, and pollution-to-human transmission mechanisms. The second section is devoted to reporting the impact of SARS-CoV-2 not only on the healthcare systems but also on the economy and society. The third section is devoted to non-pharmaceutical behaviours against COVID-19. In this context, this review section presents an analysis of the European second wave allowing not only to focalize the importance of some restrictions, but also the relevance of social acceptance of some measures. The data reassumed in this work are very useful for interdisciplinary researchers that work in a team to find the basic available information about all the aspects connected with this pandemic (from virus diffusion mechanism to health information, from economic and social impacts to measures to reduce the pandemic spread), with great attention to social acceptance of restriction measures and of vaccines (that currently results to be insufficient to achieve community immunity). Then, this review paper highlights the fundamental role of the trans-multi-disciplinary research that is devoted not only to understand the basics of the pandemic to propose solutions but has also the commitment to find strategies to increase population resilience. For this aim, the authors strongly suggest the establishment of an international health-care trans-multi-disciplinary workforce devoted to investigate, mitigate, and control also future viral events.
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Affiliation(s)
- Uttpal Anand
- Department of Life Sciences, National Institute for Biotechnology in the Negev, Ben-Gurion, University of the Negev, Beer-Sheva, 84105, Israel
| | - Carlo Cabreros
- Environmental Engineering Program, National Graduate School of Engineering, University of the Philippines, 1101, Diliman, Quezon City, Philippines
| | - Joyabrata Mal
- Department of Biotechnology, Motilal Nehru National Institute of Technology Allahabad, Prayagraj, 211004, Uttar Pradesh, India
| | - Florencio Ballesteros
- Environmental Engineering Program, National Graduate School of Engineering, University of the Philippines, 1101, Diliman, Quezon City, Philippines; Department of Chemical Engineering, College of Engineering, University of the Philippines, 1101, Diliman, Quezon City, Philippines
| | - Mika Sillanpää
- Institute of Research and Development, Duy Tan University, Da Nang, 550000, Viet Nam; Faculty of Environment and Chemical Engineering, Duy Tan University, Da Nang, 550000, Viet Nam; School of Chemical and Metallurgical Engineering, University of the Witwatersrand, 2050, Johannesburg, South Africa
| | - Vijay Tripathi
- Department of Molecular and Cellular Engineering, Jacob Institute of Biotechnology and Bioengineering, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, 211007, Uttar Pradesh, India.
| | - Elza Bontempi
- INSTM and Chemistry for Technologies, University of Brescia, Via Branze 38, 25123, Brescia, Italy.
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15
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Mazumder P, Kalamdhad A, Chaminda GT, Kumar M. Coalescence of co-infection and antimicrobial resistance with SARS-CoV-2 infection: The blues of post-COVID-19 world. CASE STUDIES IN CHEMICAL AND ENVIRONMENTAL ENGINEERING 2021; 3:100093. [PMID: 38620798 PMCID: PMC7897456 DOI: 10.1016/j.cscee.2021.100093] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 02/16/2021] [Accepted: 02/18/2021] [Indexed: 05/07/2023]
Abstract
In viral respiratory infections, bacterial co-pathogens are widely known to co-infect, and they significantly increase the morbidity and mortality rate. During the influenza season, the advent of 2019-nCoV (novel coronavirus) has led to the widespread use of oral and intravenous antibiotics and inhibitors of neuraminidase enzyme. Owing to causes such as extended intubation, the ubiquitous use of intrusive catheters, and compromised host immunity, coronavirus disease (COVID-19) patients are at heightened risk of secondary bacterial and fungal infections, leading to the difficulty in their treatment. Apart from the pandemic, the primary risk is a likely surge in multidrug resistance. In this work, we evaluated the coalescence of present co-infection alongside the COVID-19 and post-pandemic antimicrobial resistance due to high ongoing drug use for the treatment of COVID-19. We found that while there is currently limited evidence of bacterial infections in COVID-19, available proof supports the restricted use of antibiotics from an antibiotic stewardship viewpoint, primarily upon entry. Paramount attempts should be made to collect sputum and blood culture samples as well as pneumococcal urinary antigen monitoring in order to endorse stringent antibiotic usage. For antimicrobial stewardship, inflammatory markers like procalcitonin have been added, but such biomarkers are typically upraised in COVID-19. Antimicrobials cannot be completely removed in wastewater treatment plants (WWTPs) and once they enter the water environment, possesses a great risk of inducing resistance to drugs in microbes. Hence, their prescription and administrations should be regulated and alternate solutions such as vaccines, preventive measures and personal hygiene should be given top priority. It is imperative to establish an antimicrobial strategy discrete to COVID-19, as this pandemic has caused an outbreak of numerous other associated diseases and has the potential to drive microbial resistance. Coordinated plans are essential for this at the citizen, health-care and policy levels.
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Affiliation(s)
- Payal Mazumder
- Centre for the Environment, Indian Institute of Technology Guwahati, Assam, 781039, India
| | - Ajay Kalamdhad
- Department of Civil Engineering, Indian Institute of Technology Guwahati, Assam, 781039, India
| | - Gg Tushara Chaminda
- Departmnet of Civil and Environmental Engineering, University of Ruhuna, Galle, Sri Lanka
| | - Manish Kumar
- Discipline of Earth Science, Indian Institute of Technology Gandhinagar, Gujarat, 3823009, India
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16
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Anand U, Cabreros C, Mal J, Ballesteros F, Sillanpää M, Tripathi V, Bontempi E. Novel coronavirus disease 2019 (COVID-19) pandemic: From transmission to control with an interdisciplinary vision. ENVIRONMENTAL RESEARCH 2021; 197:111126. [PMID: 33831411 DOI: 10.1016/j.envres.2021a.111126] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Received: 01/24/2021] [Revised: 03/09/2021] [Accepted: 04/01/2021] [Indexed: 05/18/2023]
Abstract
There a lot of review papers addressing specific COVID-19 research sectors, then devoted to specialists. This review provides an in-depth summary of the available information about SARS-CoV-2 and the corresponding disease (also known as COVID-19), with a multi-disciplinary approach. After the paper introduction, the first section treats the virological characteristics of SARS-CoV-2, the medical implications of the infection, and the human susceptivity. Great attention is devoted to the factor affecting the infection routes, distinguishing among the possible human-to-human, environmental-to-human, and pollution-to-human transmission mechanisms. The second section is devoted to reporting the impact of SARS-CoV-2 not only on the healthcare systems but also on the economy and society. The third section is devoted to non-pharmaceutical behaviours against COVID-19. In this context, this review section presents an analysis of the European second wave allowing not only to focalize the importance of some restrictions, but also the relevance of social acceptance of some measures. The data reassumed in this work are very useful for interdisciplinary researchers that work in a team to find the basic available information about all the aspects connected with this pandemic (from virus diffusion mechanism to health information, from economic and social impacts to measures to reduce the pandemic spread), with great attention to social acceptance of restriction measures and of vaccines (that currently results to be insufficient to achieve community immunity). Then, this review paper highlights the fundamental role of the trans-multi-disciplinary research that is devoted not only to understand the basics of the pandemic to propose solutions but has also the commitment to find strategies to increase population resilience. For this aim, the authors strongly suggest the establishment of an international health-care trans-multi-disciplinary workforce devoted to investigate, mitigate, and control also future viral events.
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Affiliation(s)
- Uttpal Anand
- Department of Life Sciences, National Institute for Biotechnology in the Negev, Ben-Gurion, University of the Negev, Beer-Sheva, 84105, Israel
| | - Carlo Cabreros
- Environmental Engineering Program, National Graduate School of Engineering, University of the Philippines, 1101, Diliman, Quezon City, Philippines
| | - Joyabrata Mal
- Department of Biotechnology, Motilal Nehru National Institute of Technology Allahabad, Prayagraj, 211004, Uttar Pradesh, India
| | - Florencio Ballesteros
- Environmental Engineering Program, National Graduate School of Engineering, University of the Philippines, 1101, Diliman, Quezon City, Philippines; Department of Chemical Engineering, College of Engineering, University of the Philippines, 1101, Diliman, Quezon City, Philippines
| | - Mika Sillanpää
- Institute of Research and Development, Duy Tan University, Da Nang, 550000, Viet Nam; Faculty of Environment and Chemical Engineering, Duy Tan University, Da Nang, 550000, Viet Nam; School of Chemical and Metallurgical Engineering, University of the Witwatersrand, 2050, Johannesburg, South Africa
| | - Vijay Tripathi
- Department of Molecular and Cellular Engineering, Jacob Institute of Biotechnology and Bioengineering, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, 211007, Uttar Pradesh, India.
| | - Elza Bontempi
- INSTM and Chemistry for Technologies, University of Brescia, Via Branze 38, 25123, Brescia, Italy.
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17
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Kulkarni RD. Why is COVID-19 rising in summer? Indian J Med Microbiol 2021; 39:564. [PMID: 34083083 PMCID: PMC8165563 DOI: 10.1016/j.ijmmb.2021.05.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Raghavendra D Kulkarni
- Department of Microbiology, SDM College of Medical Sciences & Hospital, Dharwad, 580009, Karnataka State, India.
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18
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Michán C, Blasco J, Alhama J. High-throughput molecular analyses of microbiomes as a tool to monitor the wellbeing of aquatic environments. Microb Biotechnol 2021; 14:870-885. [PMID: 33559398 PMCID: PMC8085945 DOI: 10.1111/1751-7915.13763] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Revised: 01/12/2021] [Accepted: 01/19/2021] [Indexed: 12/15/2022] Open
Abstract
Aquatic environments are the recipients of many sources of environmental stress that trigger both local and global changes. To evaluate the associated risks to organisms and ecosystems more sensitive and accurate strategies are required. The analysis of the microbiome is one of the most promising candidates for environmental diagnosis of aquatic systems. Culture-independent interconnected meta-omic approaches are being increasing used to fill the gaps that classical microbial approaches cannot resolve. Here, we provide a prospective view of the increasing application of these high-throughput molecular technologies to evaluate the structure and functional activity of microbial communities in response to changes and disturbances in the environment, mostly of anthropogenic origin. Some relevant topics are reviewed, such as: (i) the use of microorganisms for water quality assessment, highlighting the incidence of antimicrobial resistance as an increasingly serious threat to global public health; (ii) the crucial role of microorganisms and their complex relationships with the ongoing climate change, and other stress threats; (iii) the responses of the environmental microbiome to extreme pollution conditions, such as acid mine drainage or oil spills. Moreover, protists and viruses, due to their huge impacts on the structure of microbial communities, are emerging candidates for the assessment of aquatic environmental health.
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Affiliation(s)
- Carmen Michán
- Departamento de Bioquímica y Biología MolecularCampus de Excelencia Internacional Agroalimentario CeiA3Universidad de CórdobaCampus de Rabanales, Edificio Severo OchoaCórdobaE‐14071Spain
| | - Julián Blasco
- Department of Ecology and Coastal ManagementICMAN‐CSICCampus Rio San PedroPuerto Real (Cádiz)E‐11510Spain
| | - José Alhama
- Departamento de Bioquímica y Biología MolecularCampus de Excelencia Internacional Agroalimentario CeiA3Universidad de CórdobaCampus de Rabanales, Edificio Severo OchoaCórdobaE‐14071Spain
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19
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Mohapatra S, Menon NG, Mohapatra G, Pisharody L, Pattnaik A, Menon NG, Bhukya PL, Srivastava M, Singh M, Barman MK, Gin KYH, Mukherji S. The novel SARS-CoV-2 pandemic: Possible environmental transmission, detection, persistence and fate during wastewater and water treatment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 765:142746. [PMID: 33092831 PMCID: PMC7536135 DOI: 10.1016/j.scitotenv.2020.142746] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Revised: 09/08/2020] [Accepted: 09/27/2020] [Indexed: 04/14/2023]
Abstract
The contagious SARS-CoV-2 virus, responsible for COVID-19 disease, has infected over 27 million people across the globe within a few months. While literature on SARS-CoV-2 indicates that its transmission may occur predominantly via aerosolization of virus-laden droplets, the possibility of alternate routes of transmission and/or reinfection via the environment requires considerable scientific attention. This review aims to collate information on possible transmission routes of this virus, to ascertain its fate in the environment. Concomitant with the presence of SARS-CoV-2 viral RNA in faeces and saliva of infected patients, studies also indicated its occurrence in raw wastewater, primary sludge and river water. Therefore sewerage system could be a possible route of virus outbreak, a possible tool to assess viral community spread and future surveillance technique. Hence, this review looked into detection, occurrence and fate of SARS-CoV-2 during primary, secondary, and tertiary wastewater and water treatment processes based on published literature on SARS-CoV and other enveloped viruses. The review also highlights the need for focused research on occurrence and fate of SARS-CoV-2 in various environmental matrices. Utilization of this information in environmental transmission models developed for other enveloped and enteric viruses can facilitate risk assessment studies. Preliminary research efforts with SARS-CoV-2 and established scientific reports on other coronaviruses indicate that the threat of virus transmission from the aquatic environment may be currently non-existent. However, the presence of viral RNA in wastewater provides an early warning that highlights the need for effective sewage treatment to prevent a future outbreak of SARS-CoV-2.
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Affiliation(s)
- Sanjeeb Mohapatra
- Environmental Science and Engineering Department (ESED), Indian Institute of Technology Bombay, India; NUS Environmental Research Institute, National University of Singapore (NUS), Singapore
| | - N Gayathri Menon
- Centre for Research in Nanotechnology and Science (CRNTS), Indian Institute of Technology Bombay, India; nEcoTox GmbH, An der Neümuhle 2, Annweiler am Trifels, Germany
| | | | - Lakshmi Pisharody
- Environmental Science and Engineering Department (ESED), Indian Institute of Technology Bombay, India
| | - Aryamav Pattnaik
- School of Veterinary Medicine and Biomedical Sciences, University of Nebraska-Lincoln (UNL), USA
| | - N Gowri Menon
- Department of Veterinary Epidemiology and Preventive Medicine, Kerala Veterinary and Animal Sciences University (KVASU), Wayanad, Kerala, India
| | | | | | | | | | - Karina Yew-Hoong Gin
- Department of Civil and Environmental Engineering, National University of Singapore (NUS), Singapore.
| | - Suparna Mukherji
- Environmental Science and Engineering Department (ESED), Indian Institute of Technology Bombay, India; Centre for Research in Nanotechnology and Science (CRNTS), Indian Institute of Technology Bombay, India.
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20
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Bhattacharya P, Kumar M, Islam MT, Haque R, Chakraborty S, Ahmad A, Niazi NK, Cetecioglu Z, Nilsson D, Ijumulana J, van der Voorn T, Jakariya M, Hossain M, Ahmed F, Rahman M, Akter N, Johnston D, Ahmed KM. Prevalence of SARS-CoV-2 in Communities Through Wastewater Surveillance-a Potential Approach for Estimation of Disease Burden. CURRENT POLLUTION REPORTS 2021; 7:160-166. [PMID: 33842197 PMCID: PMC8021931 DOI: 10.1007/s40726-021-00178-4] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 02/18/2021] [Indexed: 05/17/2023]
Abstract
The episodic outbreak of COVID-19 due to SARS-CoV-2 is severely affecting the economy, and the global count of infected patients is increasing. The actual number of patients had been underestimated due to limited facilities for testing as well as asymptomatic nature of the expression of COVID-19 on individual basis. Tragically, for emerging economies with high population density, the situation has been more complex due to insufficient testing facilities for diagnosis of the disease. However, the recent reports about persistent shedding of viral RNA of SARS-CoV-2 in the human feces have created a possibility to track the prevalence and trends of the disease in communities, known as wastewater-based epidemiology (WBE). In this article, we highlight the current limitations and future prospects for WBE to manage pandemics.
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Affiliation(s)
- Prosun Bhattacharya
- Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE-11428 Stockholm, Sweden
- KWR Watercycle Research Institute, Groningenhaven 7, 3433 PE Nieuwegein, The Netherlands
| | - Manish Kumar
- Discipline of Earth Science, Indian Institute of Technology Gandhinagar, Ahmedabad, Gujarat 382 355 India
| | - Md. Tahmidul Islam
- Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE-11428 Stockholm, Sweden
- WaterAid Bangladesh, House 97/B, Road 25, Block A, Banani, Dhaka, 1213 Bangladesh
| | - Rehnuma Haque
- Environmental Interventions Unit, Infectious Disease Division, icddr,b, 68 Shaheed Tajuddin Ahmed Sarani, Mohakhali, Dhaka, 1212 Bangladesh
| | - Sudip Chakraborty
- Department of DIMES, University of Calabria, Via P. Bucci, Cubo 42/a, 87036 Rende, Italy
| | - Arslan Ahmad
- Department of Environmental Technology, Wageningen University and Research (WUR), Droevendaalsesteeg 4, 6708 PB Wageningen, The Netherlands
| | - Nabeel Khan Niazi
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, 38040 Pakistan
- School of Civil Engineering and Surveying, University of Southern Queensland, Toowoomba, Queensland 4350 Australia
| | - Zeynep Cetecioglu
- Department of Chemical Engineering, KTH Royal Institute of Technology, Teknikringen 42, Stockholm, SE-10044 Sweden
| | - David Nilsson
- WaterCenter@KTH, Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE-11428 Stockholm, Sweden
| | - Julian Ijumulana
- Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE-11428 Stockholm, Sweden
| | - Tom van der Voorn
- University of Osnabrück, Institute of Environmental Systems Research, Barbarastr. 12, 49069 Osnabrück, Germany
| | - Md. Jakariya
- Department of Environmental Science and Management, North South University, Bashundhara, Dhaka, 1229 Bangladesh
| | - Maqsud Hossain
- Department of Biochemistry and Microbiology, NSU Genome Research Institute (NGRI), North South University, Bashundhara, Dhaka, 1229 Bangladesh
| | - Firoz Ahmed
- Department of Microbiology, Noakhali University of Science and Technology, Noakhali, Bangladesh
| | - Mahbubur Rahman
- Environmental Interventions Unit, Infectious Disease Division, icddr,b, 68 Shaheed Tajuddin Ahmed Sarani, Mohakhali, Dhaka, 1212 Bangladesh
| | - Nargis Akter
- Water Sanitation and Hygiene Section, United Nations Children’s Fund, BSL Office Complex, 1 Minto Road, Dhaka, 1000 Bangladesh
| | - Dara Johnston
- Water Sanitation and Hygiene Section, United Nations Children’s Fund, BSL Office Complex, 1 Minto Road, Dhaka, 1000 Bangladesh
| | - Kazi Matin Ahmed
- Department of Geology, University of Dhaka, Dhaka, 1000 Bangladesh
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21
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Kumar M, Mazumder P, Mohapatra S, Kumar Thakur A, Dhangar K, Taki K, Mukherjee S, Kumar Patel A, Bhattacharya P, Mohapatra P, Rinklebe J, Kitajima M, Hai FI, Khursheed A, Furumai H, Sonne C, Kuroda K. A chronicle of SARS-CoV-2: Seasonality, environmental fate, transport, inactivation, and antiviral drug resistance. JOURNAL OF HAZARDOUS MATERIALS 2021; 405:124043. [PMID: 33268203 PMCID: PMC7536132 DOI: 10.1016/j.jhazmat.2020.124043] [Citation(s) in RCA: 50] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Revised: 09/11/2020] [Accepted: 09/17/2020] [Indexed: 05/08/2023]
Abstract
In this review, we present the environmental perspectives of the viruses and antiviral drugs related to SARS-CoV-2. The present review paper discusses occurrence, fate, transport, susceptibility, and inactivation mechanisms of viruses in the environment as well as environmental occurrence and fate of antiviral drugs, and prospects (prevalence and occurrence) of antiviral drug resistance (both antiviral drug resistant viruses and antiviral resistance in the human). During winter, the number of viral disease cases and environmental occurrence of antiviral drug surge due to various biotic and abiotic factors such as transmission pathways, human behaviour, susceptibility, and immunity as well as cold climatic conditions. Adsorption and persistence critically determine the fate and transport of viruses in the environment. Inactivation and disinfection of virus include UV, alcohol, and other chemical-base methods but the susceptibility of virus against these methods varies. Wastewater treatment plants (WWTPs) are major reserviors of antiviral drugs and their metabolites and transformation products. Ecotoxicity of antiviral drug residues against aquatic organisms have been reported, however more threatening is the development of antiviral resistance, both in humans and in wild animal reservoirs. In particular, emergence of antiviral drug-resistant viruses via exposure of wild animals to high loads of antiviral residues during the current pandemic needs further evaluation.
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Affiliation(s)
- Manish Kumar
- Discipline of Earth Science, Indian Institute of Technology Gandhinagar, Gujarat 382 355, India.
| | - Payal Mazumder
- Centre for the Environment, Indian Institute of Technology Guwahati, Guwahati 781039, Assam, India
| | - Sanjeeb Mohapatra
- Environmnetal Science and Engineering Department, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Alok Kumar Thakur
- Discipline of Earth Science, Indian Institute of Technology Gandhinagar, Gujarat 382 355, India
| | - Kiran Dhangar
- Discipline of Earth Science, Indian Institute of Technology Gandhinagar, Gujarat 382 355, India
| | - Kaling Taki
- Discipline of Civil Engineering, Indian Institute of Technology Gandhinagar, Gujarat 382 355, India
| | - Santanu Mukherjee
- Discipline of Earth Science, Indian Institute of Technology Gandhinagar, Gujarat 382 355, India
| | - Arbind Kumar Patel
- Discipline of Earth Science, Indian Institute of Technology Gandhinagar, Gujarat 382 355, India
| | - Prosun Bhattacharya
- Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE-10044 Stockholm, Sweden
| | - Pranab Mohapatra
- Discipline of Civil Engineering, Indian Institute of Technology Gandhinagar, Gujarat 382 355, India
| | - Jörg Rinklebe
- Laboratory of Soil- and Groundwater-Management, School of Architecture and Civil Engineering, University of Wuppertal, Wuppertal 42285, Germany; Department of Environment, Energy and Geoinformatics, University of Sejong, Seoul, South Korea
| | - Masaaki Kitajima
- Division of Environmental Engineering, Hokkaido University, Hokkaido 060-8628, Japan
| | - Faisal I Hai
- Wollongong, Strategic Water Infrastructure Laboratory, School of Civil, Mining and Environmental Engineering, University of Wollongong, NSW 2522, Australia
| | - Anwar Khursheed
- Department of Civil Engineering, King Saud University, Riyadh, Saudi Arabia
| | - Hiroaki Furumai
- Research Centre for Water Environment Technology, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan
| | - Christian Sonne
- Department of Bioscience, Aarhus University, Frederiksborgvej 399, PO Box 358, DK-4000 Roskilde, Denmark
| | - Keisuke Kuroda
- Department of Environmental and Civil Engineering, Toyama Prefectural University, Toyama 9390398, Japan
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22
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Kumar M, Kuroda K, Patel AK, Patel N, Bhattacharya P, Joshi M, Joshi CG. Decay of SARS-CoV-2 RNA along the wastewater treatment outfitted with Upflow Anaerobic Sludge Blanket (UASB) system evaluated through two sample concentration techniques. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 754:142329. [PMID: 33254951 PMCID: PMC7490623 DOI: 10.1016/j.scitotenv.2020.142329] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/15/2020] [Revised: 09/07/2020] [Accepted: 09/08/2020] [Indexed: 05/18/2023]
Abstract
For the first time, we present, i) an account of decay in the genetic material loading of SARS-CoV-2 during Upflow Anaerobic Sludge Blanket (UASB) treatment of wastewater, and ii) comparative evaluation of polyethylene glycol (PEG), and ultrafiltration as virus concentration methods from wastewater for the quantification of SARS-CoV-2 genes. The objectives were achieved through tracking of SARS-CoV-2 genetic loadings i.e. ORF1ab, N and S protein genes on 8th and 27th May 2020 along the wastewater treatment plant (106000 m3 million liters per day) equipped with UASB system in Ahmedabad, India. PEG method performed better in removing materials inhibiting RT-qPCR for SARS-CoV-2 gene detection from the samples, as evident from constant and lower CT values of control (MS2). Using the PEG method, we found a reduction >1.3 log10 reduction in SARS-CoV-2 RNA abundance during UASB treatment, and the RNA was not detected at all in the final effluent. The study implies that i) conventional wastewater treatment systems is effective in SARS-CoV-2 RNA removal, and ii) UASB system significantly reduces SARS-CoV-2 genetic loadings. Finally, PEG method is recommended for better sensitivity and inhibition removal during SARS-CoV-2 RNA quantification in wastewater.
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Affiliation(s)
- Manish Kumar
- Discipline of Earth Science, Indian Institute of Technology Gandhinagar, Gujarat 382 355, India; Kiran C Patel Centre for Sustainable Development, Indian Institute of Technology Gandhinagar, Gujarat, India.
| | - Keisuke Kuroda
- Department of Environmental and Civil Engineering, Toyama Prefectural University, Toyama, 9390398, Japan
| | - Arbind Kumar Patel
- Discipline of Earth Science, Indian Institute of Technology Gandhinagar, Gujarat 382 355, India
| | - Nidhi Patel
- Gujarat Biotechnology Research Centre (GBRC), Sector-11, Gandhinagar, Gujarat 382 011, India
| | - Prosun Bhattacharya
- Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 42, SE-11428 Stockholm, Sweden
| | - Madhvi Joshi
- Gujarat Biotechnology Research Centre (GBRC), Sector-11, Gandhinagar, Gujarat 382 011, India
| | - Chaitanya G Joshi
- Gujarat Biotechnology Research Centre (GBRC), Sector-11, Gandhinagar, Gujarat 382 011, India
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23
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Thakur AK, Ramanathan AL, Bhattacharya P, Kumar M. Wastewater discharge and surface water contamination pre- and post- COVID 19—global case studies. ENVIRONMENTAL RESILIENCE AND TRANSFORMATION IN TIMES OF COVID-19 2021. [PMCID: PMC8137801 DOI: 10.1016/b978-0-323-85512-9.00025-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Global pandemic of SARS-CoV-2 has infected more than 53 million people in more than 190 countries. The major transmission routes of most of the infectious viruses’ including SARS-CoV-2 remain aerosols and droplets. The source of which remains coughing, sneezing, urinary, and intestinal excretions. This book chapter focuses on the latter two sources of water and wastewater contamination with RNA of these contagious viruses. There has been studies regarding the presence of viral RNA of COVID-19 in wastewater in few of the countries like USA, Australia, Netherland, and India. This mainly happens due to the discharge of untreated wastewater from health care facilities and sewage treatment plants. Improper management of the waste has led to the contamination of surface water bodies. Fecal shedding of the virus is common in 50% of the infected individual, and urinal shedding in just around 5%. The former shedding is of the order of 103–105 copies/mL. The wastewater surveillance for SARS-CoV-2 RNA in wastewater gives the figure of 102–106 copies/L. The surveillance already known to track down many diseases, drugs in past has been a boon to the countries, where clinical testing is at a slow pace. Therefore, wastewater-based epidemiology is needed to have a better understanding of the water and wastewater surveillances, for prior detection of SARS-CoV-2 and other pathogens, sought to occur in future. The chapter deals with the occurrences, transport pathways, persistence, and removal of most of the reported infectious viruses in water and wastewater, with a special emphasize on SARS-CoV-2. Developing a proper framework and methodology containing environment and human health risk assessments will help the researchers and policyholders to look up for the alternative options. Even after a number of researches detecting the presence of SARS-CoV-2 in wastewater, there has been a limited knowledge in the potential role of water and wastewater in the transmission of these infectious viruses. A well summarized review would surely help in the assessment of the likely fate of most of these contagious human viruses.
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24
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Kumar M, Thakur AK, Mazumder P, Kuroda K, Mohapatra S, Rinklebe J, Ramanathan A, Cetecioglu Z, Jain S, Tyagi VK, Gikas P, Chakraborty S, Tahmidul Islam M, Ahmad A, Shah AV, Patel AK, Watanabe T, Vithanage M, Bibby K, Kitajima M, Bhattacharya P. Frontier review on the propensity and repercussion of SARS-CoV-2 migration to aquatic environment. JOURNAL OF HAZARDOUS MATERIALS LETTERS 2020; 1:100001. [PMID: 34977840 PMCID: PMC7456799 DOI: 10.1016/j.hazl.2020.100001] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2020] [Revised: 07/23/2020] [Accepted: 07/26/2020] [Indexed: 05/16/2023]
Abstract
Increased concern has recently emerged pertaining to the occurrence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in aquatic environment during the current coronavirus disease 2019 (COVID-19) pandemic. While infectious SARS-CoV-2 has yet to be identified in the aquatic environment, the virus potentially enters the wastewater stream from patient excretions and a precautionary approach dictates evaluating transmission pathways to ensure public health and safety. Although enveloped viruses have presumed low persistence in water and are generally susceptible to inactivation by environmental stressors, previously identified enveloped viruses persist in the aqueous environment from days to several weeks. Our analysis suggests that not only the surface water, but also groundwater, represent SARS-CoV-2 control points through possible leaching and infiltrations of effluents from health care facilities, sewage, and drainage water. Most fecally transmitted viruses are highly persistent in the aquatic environment, and therefore, the persistence of SARS-CoV-2 in water is essential to inform its fate in water, wastewater and groundwater and subsequent human exposure.
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Affiliation(s)
- Manish Kumar
- Discipline of Earth Science, Indian Institute of Technology Gandhinagar, Gujarat 382 355, India
| | - Alok Kumar Thakur
- Discipline of Earth Science, Indian Institute of Technology Gandhinagar, Gujarat 382 355, India
| | - Payal Mazumder
- Centre for the Environment, Indian Institute of Technology Guwahati, Guwahati, Assam 781039, India
| | - Keisuke Kuroda
- Department of Environmental and Civil Engineering, Toyama Prefectural University, Toyama 9390398, Japan
| | - Sanjeeb Mohapatra
- Environmental Science and Engineering Department, Indian Institute of Technology, Bombay, India
| | - Jörg Rinklebe
- Laboratory of Soil- and Groundwater-Management, School of Architecture and Civil Engineering, University of Wuppertal, Wuppertal 42285, Germany
- Department of Environment, Energy and Geoinformatics, University of Sejong, Seoul, Republic of Korea
| | - Al Ramanathan
- School of Environmental Sciences, Jawaharlal Nehru University, New Delhi 110067, India
| | - Zeynep Cetecioglu
- Department of Chemical Engineering, KTH Royal Institute of Technology, Teknikringen 42, SE100 44 Stockholm, Sweden
| | - Sharad Jain
- Department of Civil Engineering, Indian Institute of Technology Roorkee, Uttarakhand 247667, India
| | - Vinay Kumar Tyagi
- Department of Civil Engineering, Indian Institute of Technology Roorkee, Uttarakhand 247667, India
| | - Petros Gikas
- School of Environmental Engineering, Technical University of Crete, Chania 73100, Greece
| | - Sudip Chakraborty
- Department of IngegneriaModellisticaElettronica&Sistemistica,University of Calabria, Via P. Bucci, Cubo 42/a, 87036 Rende (CS), Italy
| | - M Tahmidul Islam
- Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE-10044 Stockholm, Sweden
| | - Arslan Ahmad
- KWR Water Cycle Research Institute, Groningenhaven 7, 3433 PE Nieuwegein, The Netherlands
- Department of Environmental Technology, Wageningen University and Research (WUR), The Netherlands
| | - Anil V Shah
- Gujarat Pollution Control Board, Sector-10A, Gandhinagar 382010, Gujarat, India
| | - Arbind Kumar Patel
- Discipline of Earth Science, Indian Institute of Technology Gandhinagar, Gujarat 382 355, India
| | - Toru Watanabe
- Department of Food, Life and Environmental Sciences, Yamagata University, Tsuruoka, Yamagata, Japan
| | - Meththika Vithanage
- Ecosphere Resilience Research Centre, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda, Sri Lanka
| | - Kyle Bibby
- Department of Civil and Environmental Engineering and Earth Sciences, University of Notre Dame, 156 Fitzpatrick Hall, Notre Dame, IN 46556, United States
| | - Masaaki Kitajima
- Division of Environmental Engineering, Hokkaido University, North 13 West 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan
- Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE-10044 Stockholm, Sweden
| | - Prosun Bhattacharya
- Department of Sustainable Development, Environmental Science and Engineering, KTH Royal Institute of Technology, Teknikringen 10B, SE-10044 Stockholm, Sweden
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