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Panda S, Phan H, Karlin KD. Heme-copper and Heme O 2-derived synthetic (bioinorganic) chemistry toward an understanding of cytochrome c oxidase dioxygen chemistry. J Inorg Biochem 2023; 249:112367. [PMID: 37742491 PMCID: PMC10615892 DOI: 10.1016/j.jinorgbio.2023.112367] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 08/22/2023] [Accepted: 09/07/2023] [Indexed: 09/26/2023]
Abstract
Cytochrome c oxidase (CcO), also widely known as mitochondrial electron-transport-chain complex IV, is a multi-subunit transmembrane protein responsible for catalyzing the last step of the electron transport chain, dioxygen reduction to water, which is essential to the establishment and maintenance of the membrane proton gradient that drives ATP synthesis. Although many intermediates in the CcO catalytic cycle have been spectroscopically and/or computationally authenticated, the specifics regarding the IP intermediate, hypothesized to be a heme-Cu (hydro)peroxo species whose O-O bond homolysis is supported by a hydrogen-bonding network of water molecules, are largely obscured by the fast kinetics of the A (FeIII-O2•-/CuI/Tyr) → PM (FeIV=O/CuII-OH/Tyr•) step. In this review, we have focused on the recent advancements in the design, development, and characterization of synthetic heme-peroxo‑copper model complexes, which can circumvent the abovementioned limitation, for the investigation of the formation of IP and its O-O cleavage chemistry. Novel findings regarding (a) proton and electron transfer (PT/ET) processes, together with their contributions to exogenous phenol induced O-O cleavage, (b) the stereo-electronic tunability of the secondary coordination sphere (especially hydrogen-bonding) on the geometric and spin state alteration of the heme-peroxo‑copper unit, and (c) a plausible mechanism for the Tyr-His cofactor biogenesis, are discussed in great detail. Additionally, since the ferric-superoxide and the ferryl-oxo (Compound II) species are critically involved in the CcO catalytic cycle, this review also highlights a few fundamental aspects of these heme-only (i.e., without copper) species, including the structural and reactivity influences of electron-donating trans-axial ligands and Lewis acid-promoted H-bonding.
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Affiliation(s)
- Sanjib Panda
- Department of Chemistry, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Hai Phan
- Department of Chemistry, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Kenneth D Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, MD 21218, USA.
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2
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Schaefer AW, Ehudin MA, Quist DA, Tang JA, Karlin KD, Solomon EI. Spin Interconversion of Heme-Peroxo-Copper Complexes Facilitated by Intramolecular Hydrogen-Bonding Interactions. J Am Chem Soc 2019; 141:4936-4951. [PMID: 30836005 PMCID: PMC6457345 DOI: 10.1021/jacs.9b00118] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Synthetic peroxo-bridged high-spin (HS) heme-(μ-η2:η1-O22-)-Cu(L) complexes incorporating (as part of the copper ligand) intramolecular hydrogen-bond (H-bond) capabilities and/or steric effects are herein demonstrated to affect the complex's electronic and geometric structure, notably impacting the spin state. An H-bonding interaction with the peroxo core favors a low-spin (LS) heme-(μ-η1:η1-O22-)-Cu(L) structure, resulting in a reversible temperature-dependent interconversion of spin state (5 coordinate HS to 6 coordinate LS). The LS state dominates at low temperatures, even in the absence of a strong trans-axial heme ligand. Lewis base addition inhibits the H-bond facilitated spin interconversion by competition for the H-bond donor, illustrating the precise H-bonding interaction required to induce spin-crossover (SCO). Resonance Raman spectroscopy (rR) shows that the H-bonding pendant interacts with the bridging peroxide ligand to stabilize the LS but not the HS state. The H-bond (to the Cu-bound O atom) acts to weaken the O-O bond and strengthen the Fe-O bond, exhibiting ν(M-O) and ν(O-O) values comparable to analogous known LS complexes with a strong donating trans-axial ligand, 1,5-dicyclohexylimidazole, (DCHIm)heme-(μ-η1:η1-O22-)-Cu(L). Variable-temperature (-90 to -130 °C) UV-vis and 2H NMR spectroscopies confirm the SCO process and implicate the involvement of solvent binding. Examining a case of solvent binding without SCO, thermodynamic parameters were obtained from a van't Hoff analysis, accounting for its contribution in SCO. Taken together, these data provide evidence for the H-bond group facilitating a core geometry change and allowing solvent to bind, stabilizing a LS state. The rR data, complemented by DFT analysis, reveal a stronger H-bonding interaction with the peroxo core in the LS compared to the HS complexes, which enthalpically favors the LS state. These insights enhance our fundamental understanding of secondary coordination sphere influences in metalloenzymes.
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Affiliation(s)
- Andrew W. Schaefer
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Melanie A. Ehudin
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - David A. Quist
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Joel A. Tang
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Kenneth D. Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Edward I. Solomon
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
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3
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Ide Y, Murai N, Ishimae H, Suzuki M, Mori S, Takahashi M, Nakamura M, Yoshino K, Ikeue T. Spin-crossover between high-spin (S = 5/2) and low-spin (S = 1/2) states in six-coordinate iron(iii) porphyrin complexes having two pyridine-N oxide derivatives. Dalton Trans 2016; 46:242-249. [PMID: 27924994 DOI: 10.1039/c6dt03859j] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In contrast to the general tendency that six coordinate iron(iii) porphyrin complexes with neutral oxygen ligands adopt a high-spin state in a wide range of temperature, some complexes with substituted pyridine N-oxides have exhibited spin-crossover from high-spin to low-spin states with decreasing temperature both in solution and in the solid state.
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Affiliation(s)
- Yuki Ide
- Department of Chemistry, Interdisciplinary Graduate School of Science and Engineering, Shimane University, 1060 Nishikawatsu, Matsue 690-8504, Japan.
| | - Nami Murai
- Department of Chemistry, Interdisciplinary Graduate School of Science and Engineering, Shimane University, 1060 Nishikawatsu, Matsue 690-8504, Japan.
| | - Hiroki Ishimae
- Department of Chemistry, Interdisciplinary Graduate School of Science and Engineering, Shimane University, 1060 Nishikawatsu, Matsue 690-8504, Japan.
| | - Masaaki Suzuki
- Department of Chemistry, Interdisciplinary Graduate School of Science and Engineering, Shimane University, 1060 Nishikawatsu, Matsue 690-8504, Japan.
| | - Shigeki Mori
- Advanced Research Support Center, Ehime University, 2-5, Bunkyo-cho, Matsuyama, 790-8577, Japan
| | - Masashi Takahashi
- Department of Chemistry, Faculty of Science, Toho University, Funabashi 274-8510, Japan
| | - Mikio Nakamura
- Department of Chemistry, Faculty of Science, Toho University, Funabashi 274-8510, Japan
| | - Katsumi Yoshino
- Shimane Institute for Industrial Technology, 1 Hokuryo, Matsue, Shimane 690-0816, Japan
| | - Takahisa Ikeue
- Department of Chemistry, Interdisciplinary Graduate School of Science and Engineering, Shimane University, 1060 Nishikawatsu, Matsue 690-8504, Japan.
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4
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Shibata T, Kanai Y, Nishimura R, Xu L, Moritaka Y, Suzuki A, Neya S, Nakamura M, Yamamoto Y. Characterization of Ground State Electron Configurations of High-Spin Quintet Ferrous Heme Iron in Deoxy Myoglobin Reconstituted with Trifluoromethyl Group-Substituted Heme Cofactors. Inorg Chem 2016; 55:12128-12136. [DOI: 10.1021/acs.inorgchem.6b01360] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tomokazu Shibata
- Department of Chemistry, University of Tsukuba, Tsukuba 305-8571, Japan
| | - Yuki Kanai
- Department of Chemistry, University of Tsukuba, Tsukuba 305-8571, Japan
| | - Ryu Nishimura
- Department of Chemistry, University of Tsukuba, Tsukuba 305-8571, Japan
| | - Liyang Xu
- Department of Chemistry, University of Tsukuba, Tsukuba 305-8571, Japan
| | - Yuki Moritaka
- Department of Chemistry, University of Tsukuba, Tsukuba 305-8571, Japan
| | - Akihiro Suzuki
- Department of Materials Engineering, Nagaoka National College of Technology, Nagaoka 940-8532, Japan
| | - Saburo Neya
- Department of Physical Chemistry, Graduate School of
Pharmaceutical Sciences, Chiba University, Chuoh-Inohana, Chiba 260-8675, Japan
| | - Mikio Nakamura
- Department
of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba 274-8510, Japan
| | - Yasuhiko Yamamoto
- Department of Chemistry, University of Tsukuba, Tsukuba 305-8571, Japan
- Life Science
Center of Tsukuba Advanced Research Alliance, University of Tsukuba, Tsukuba 305-8577, Japan
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5
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Ferrand L, Soorkia S, Grégoire G, Broquier M, Soep B, Shafizadeh N. Bonding of heme Fe(III) with dioxygen: observation and characterization of an incipient bond. Phys Chem Chem Phys 2016; 17:25693-9. [PMID: 26059068 DOI: 10.1039/c5cp01585e] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
While ferrous heme (Fe(II)) within hemoproteins binds dioxygen efficiently, it has not yet been possible to observe the analog complex with ferric heme (Fe(III)). We present the first observation and characterization of the latter complex in a cooled ion trap. The bond formation enthalpy of ferric heme-O2 has been derived from the Van't Hoff equation by means of temperature dependent measurements. The binding energy of the [heme Fe(III)-O2](+) ionic complex is rather strong as compared to that of [heme Fe(III)-N2](+), showing the formation of an incipient Fe-O bond, which is confirmed by the electronic absorption spectra of the two complexes. This first observation of the [heme Fe(III)-O2](+) complex lays the basis for the precise description of its electronic states.
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Affiliation(s)
- Léa Ferrand
- ISMO, Univ Paris-Sud, CNRS UMR 8214, bat 210 Univ Paris-Sud 91405, Orsay Cedex, France.
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6
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Cerdonio M, Morante S, Vitale S. Low Lying Paramagnetic States in Oxy- and Carbonmonoxyhemoglobins. Isr J Chem 2013. [DOI: 10.1002/ijch.198100019] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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7
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Cerdonio M, Congiu-Castellano A, Calabrese L, Morante S, Pispisa B, Vitale S. Room-temperature magnetic properties of oxy- and carbonmonoxyhemoglobin. Proc Natl Acad Sci U S A 2010; 75:4916-9. [PMID: 16592578 PMCID: PMC336232 DOI: 10.1073/pnas.75.10.4916] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The magnetic susceptibility and the density of human oxy-(HbO(2)) and carbonmonoxyhemoglobin (HbCO) solutions of various concentrations have been measured at room temperature, with pure water used as a calibrant. Solutions of unstripped and stripped HbO(2) at pH 7.2 in unbuffered water solvent were always found to be less diamagnetic than pure water, whereas solutions of HbCO in identical conditions were always found to be more diamagnetic than pure water. After correcting for concentration-dependent density changes and assuming the HbCO samples to be fully diamagnetic, the paramagnetic reduction of the diamagnetic susceptibility of HbO(2) corresponds to a molar susceptibility per heme (chi(M) (heme)) of 2460 +/- 600 x 10(-6) cgs/mol.
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Affiliation(s)
- M Cerdonio
- Facoltà di Scienze, Free University of Trento, POVO, Trento, Italy
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8
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Caillet-Saguy C, Turano P, Piccioli M, Lukat-Rodgers GS, Czjzek M, Guigliarelli B, Izadi-Pruneyre N, Rodgers KR, Delepierre M, Lecroisey A. Deciphering the Structural Role of Histidine 83 for Heme Binding in Hemophore HasA. J Biol Chem 2008; 283:5960-70. [DOI: 10.1074/jbc.m703795200] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
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9
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Bertini I. The Investigation of Coordinated Water in Paramagnetic Metalloproteins through Nuclear Magnetic Resonance Spectroscopy. COMMENT INORG CHEM 2006. [DOI: 10.1080/02603598108078094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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10
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Yonetani T. Cytochrome c peroxidase. ADVANCES IN ENZYMOLOGY AND RELATED AREAS OF MOLECULAR BIOLOGY 2006; 33:309-35. [PMID: 4318313 DOI: 10.1002/9780470122785.ch6] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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11
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Rudd DJ, Goldsmith CR, Cole AP, Stack TDP, Hodgson KO, Hedman B. X-ray Absorption Spectroscopic Investigation of the Spin-Transition Character in a Series of Single-Site Perturbed Iron(II) Complexes. Inorg Chem 2005; 44:1221-9. [PMID: 15732962 DOI: 10.1021/ic048765l] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Select ferrous spin-transition complexes with the pentadentate ligand 2,6-bis(bis(2-pyridyl)methoxymethane)pyridine (PY5) were examined using variable-temperature solution solid-state magnetic susceptibility, crystallography, X-ray absorption spectroscopy (XAS), and UV/vis absorption spectroscopy. Altering the single exogeneous ligand, X, of [Fe(PY5)(X)]n)+ is sufficient to change the spin-state of the complexes. When X is the weak-field ligand Cl-, the resultant Fe complex is high-spin from 4 to 300 K, whereas the stronger-field ligand MeCN generates a low-spin complex over this temperature range. With intermediate-strength exogenous ligands (X = N3-, MeOH), the complexes undergo a spin-transition. [Fe(PY5)(N3)]+, as a crystalline solid, transitions gradually from a high-spin to a low-spin complex as the temperature is decreased, as evidenced by X-ray crystallography and solid-state magnetic susceptibility measurements. The spin-transition is also evident from changes in the pre-edge and EXAFS regions of the XAS Fe K-edge spectra on a ground crystalline sample. The spin-transition observed with [Fe(PY5)(MeOH)]2+ appears abrupt by solid-state magnetic susceptibility measurements, but gradual by XAS analysis, differences attributed to sample preparation. This research highlights the strengths of XAS in determining the electronic and geometric structure of such spin-transition complexes and underscores the importance of identical sample preparation in the investigation of these physical properties.
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Affiliation(s)
- Deanne Jackson Rudd
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
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12
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Hirai Y, Yamamoto Y, Suzuki A. 19F NMR Study of the Heme Orientation and Electronic Structure in a Myoglobin Reconstituted with a Ring-Fluorinated Heme. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2000. [DOI: 10.1246/bcsj.73.2309] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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13
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Makino R, Matsuda H, Obayashi E, Shiro Y, Iizuka T, Hori H. EPR characterization of axial bond in metal center of native and cobalt-substituted guanylate cyclase. J Biol Chem 1999; 274:7714-23. [PMID: 10075661 DOI: 10.1074/jbc.274.12.7714] [Citation(s) in RCA: 63] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
The nature of the metal-proximal base bond of soluble guanylate cyclase from bovine lung was examined by EPR spectroscopy. When the ferrous enzyme was mixed with NO, a new species was transiently produced and rapidly converted to a five-coordinate ferrous NO complex. The new species exhibited the EPR signal of six-coordinate ferrous NO complex with a feature of histidine-ligated heme. The histidine ligation was further examined by using the cobalt protoporphyrin IX-substituted enzyme. The Co2+-substituted enzyme exhibited EPR signals of a broad g perpendicular;1 component and a g;1 component with a poorly resolved triplet of 14N superhyperfine splittings, which was indicative of the histidine ligation. These EPR features were analogous to those of alpha-subunits of Co2+-hemoglobin in tense state, showing a tension on the iron-histidine bond of the enzyme. The binding of NO to the Co2+-enzyme markedly stimulated the cGMP production by forming the five-coordinate NO complex. We found that N3- elicited the activation of the ferric enzyme by yielding five-coordinate high spin N3- heme. These results indicated that the activation of the enzymes was initiated by NO binding to the metals and proceeded via breaking of the metal-histidine bonds, and suggested that the iron-histidine bond in the ferric enzyme heme was broken by N3- binding.
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Affiliation(s)
- R Makino
- Department of Chemistry, College of Science, Rikkyo University, Nishi-ikebukuro 3-34-1, Toshima-ku, Tokyo 171-0021, Japan.
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14
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Koshikawa K, Yamamoto Y, Kamimura S, Matsuoka A, Shikama K. 1H NMR study of dynamics and thermodynamics of acid-alkaline transition in ferric hemoglobin of a midge larva (Tokunagayusurika akamusi). BIOCHIMICA ET BIOPHYSICA ACTA 1998; 1385:89-100. [PMID: 9630537 DOI: 10.1016/s0167-4838(98)00051-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
One of the components of hemoglobin from the larval hemolyph of Tokunagayusurika akamusi possesses naturally occurring substitution at the E7 helical position (Leu E7) [M. Fukuda, T. Takagi, K. Shikama, Biochim. Biophys. Acta 1157 (1993) 185-191]. Its oxygen affinity is almost comparable to those of mammalian myoglobins and it exhibits Bohr effect. Both acidic and alkaline forms of the ferric hemoglobin have been investigated using 1H NMR in order to gain insight into molecular mechanisms for relatively high oxygen affinity and Bohr effect of this protein. The NMR data indicated that the acidic form of the protein possesses pentacoordinated heme, and that the alkaline form possessing OH- appears with increasing the pH value. pH titration yielded a pK value of 7.2 for the acid-alkaline transition, and this value is the lowest among the values reported so far for various myoglobins and hemoglobins. The kinetic measurements of the transition revealed that the activation energy for the dissociation of the Fe-bound OH-, as well as the dissociation and association rates, decrease with increasing the pH value. These pH dependence properties are likely to be related to the Bohr effect of this protein.
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Affiliation(s)
- K Koshikawa
- Department of Chemistry, University of Tsukuba, Tsukuba 305-8571, Japan
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15
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Yamamoto Y. 1H NMR Study of the Heme Molecular Structure in Sperm Whale Met-Aquo and Met-Imidazole Myoglobins. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 1996. [DOI: 10.1246/bcsj.69.2947] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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16
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Teraoka J, Yamamoto N, Matsumoto Y, Kyogoku Y, Sugeta H. What Is the Crucial Factor for Vibrational Circular Dichroism in Hemoprotein Ligands? J Am Chem Soc 1996. [DOI: 10.1021/ja9534415] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Junji Teraoka
- Contribution from the Department of Material Science, Osaka City University, Sugimoto, Osaka, Japan 558, and Institute for Protein Research, Osaka University, Suita, Osaka, Japan 565
| | - Naoko Yamamoto
- Contribution from the Department of Material Science, Osaka City University, Sugimoto, Osaka, Japan 558, and Institute for Protein Research, Osaka University, Suita, Osaka, Japan 565
| | - Yoshiaki Matsumoto
- Contribution from the Department of Material Science, Osaka City University, Sugimoto, Osaka, Japan 558, and Institute for Protein Research, Osaka University, Suita, Osaka, Japan 565
| | - Yoshimasa Kyogoku
- Contribution from the Department of Material Science, Osaka City University, Sugimoto, Osaka, Japan 558, and Institute for Protein Research, Osaka University, Suita, Osaka, Japan 565
| | - Hiromu Sugeta
- Contribution from the Department of Material Science, Osaka City University, Sugimoto, Osaka, Japan 558, and Institute for Protein Research, Osaka University, Suita, Osaka, Japan 565
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17
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Munro OQ, Marques HM. Heme-Peptide Models for Hemoproteins. 2. N-Acetylmicroperoxidase-8: Study of the pi-pi Dimers Formed at High Ionic Strength Using a Modified Version of Molecular Exciton Theory. Inorg Chem 1996; 35:3768-3779. [PMID: 11666563 DOI: 10.1021/ic950285u] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
AcMP8 is the Cys-14-acetylated water-soluble heme-octapeptide fragment obtained proteolytically from cytochrome c. Two successive dimerization equilibria are observed with increasing ionic strength in aqueous solution at neutral pH (part 1, preceding article). The electronic spectra of the two pi-pi dimers were extracted from the absorption envelopes at 2.01 and 4.02 M ionic strength and resolved by Gaussian analysis. The principal transitions were assigned using a tailored version of molecular exciton theory based on coupling of the main x- and y-polarized transition dipole moments of the interacting heme groups. The spectra of both pi-pi dimers indicate that the y-polarized exciton states are blue-shifted relative to the excited states of the monomer, while the x-polarized exciton states exhibit a red shift. These shifts were correctly predicted by a simple dipole-dipole coupling model. From an analysis of the resultant transition dipole moments to the exciton states with B(x)()(0,0) and B(y)()(0,0) character and the magnitudes of their red and blue exciton shifts, respectively, we have determined the dipole-dipole interaction geometries for both dimers. The principal difference between the interaction geometry in the first dimer and that in the second is a stronger interaction for the y-polarized transition dipoles and somewhat weakened interaction for the x-polarized transition dipoles. From an analysis of available crystallographic data for porphyrin and metalloporphyrin pi-pi dimers (Scheidt, W. R.; Lee, Y. J. Struct. Bonding 1987, 64, 1) and the results of our exciton model, we conclude that the origin of the coordinate system for the Soret transition dipole moments of AcMP8 is not metal-centered. Furthermore, since the true directions of the x- and y-axes of the low-symmetry heme chromophore in AcMP8 are unknown, we have not been able to determine the structures of the pi-pi dimers from a knowledge of their transition dipole-dipole interaction geometries. This study therefore highlights one of the shortfalls of molecular exciton theory.
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Affiliation(s)
- Orde Q. Munro
- Centre for Molecular Design, Department of Chemistry, University of the Witwatersrand, Wits 2050, Johannesburg, South Africa
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18
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Della Longa S, Amiconi G, Artan Salah O, Ascone I, Barteri M, Bertollini A, Bianconi A, Congiu Castellano A. Iron site structure of two irreversible hemichromes from human hemoglobin, untreated and oxidized to sulfoxide at MetD6(55)beta. BIOCHIMICA ET BIOPHYSICA ACTA 1996; 1294:72-6. [PMID: 8639716 DOI: 10.1016/0167-4838(95)00270-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
The Fe K-edge X-ray absorption near-edge structure (XANES) spectra of two irreversible human hemichromes, spontaneously formed from HbA and HbMetSO (a hemoglobin derivative, where MetD6(55)beta has been previously oxidized to sulfoxide by chloramine T) were determined. The results show that the hemichrome from HbMetSO is characterized by the distal histidyl imidazole moved within the bonding distance of the heme iron. Such structure is different from that of the hemichrome spontaneously produced from native human hemoglobin, which probably has a hydroxide group as sixth heme ligand.
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Affiliation(s)
- S Della Longa
- Dipartimento di Medicina Sperimentale, Università dell'Aquila, Italy.
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19
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Owens JW, Robins M, O'Connor CJ. A comparison of the magnetic and crystal field properties of protoporphyrin-IX, hemeoctapeptide and heme proteins. Inorganica Chim Acta 1995. [DOI: 10.1016/0020-1693(95)04698-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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20
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Yamamoto Y, Suzuki T, Hori H. 1H-NMR and EPR studies on met-azido and met-imidazole Dolabella auricularia myoglobin. BIOCHIMICA ET BIOPHYSICA ACTA 1995; 1248:149-58. [PMID: 7748897 DOI: 10.1016/0167-4838(95)00019-q] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Met-azido and met-imidazole forms of the myoglobin from the mollusc Dolabella auricularia have been studied by 1H-NMR and EPR spectroscopy. In the mollusc myoglobin, in which His-E7 is replaced by Val, the guanidino group of Arg-E10 serves as an alternative hydrogen-bond donor to the bound ligand. Therefore, the guanidino group of Arg-E10 plays similar roles in ligand stabilization to that the His-E7 imidazole does in most vertebrate myoglobins. Differences in both the structural and electronic properties between Arg and His side chains largely affect the stability of met-azido and met-imidazole forms of the protein. Due to a weak stabilization by Arg-E10, the bound-N3- ligand is replaced by OH- at higher pH, although it is stable at neutral and acidic pH. In the absence of the hydrogen-bonding interaction, Fe-bound imidazole in met-imidazole Dolabella myoglobin is only stable at neutral pH and is removed at acidic pH and replaced by OH- at basic pH. The temperature study also revealed that the bound imidazole is replaced by OH- at higher temperature. These results confirm that the presence of steric hindrance between these bulky ligands and the long and bulky side chain of Arg-E10 in the distal pocket of the mollusc myoglobin. Thus steric effects contribute significantly to the stability of exogenous ligand in the distal pocket of myoglobin.
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Affiliation(s)
- Y Yamamoto
- Department of Chemistry, University of Tsukuba, Japan
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21
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Bogumil R, Hunter CL, Maurus R, Tang HL, Lee H, Lloyd E, Brayer GD, Smith M, Mauk AG. FTIR analysis of the interaction of azide with horse heart myoglobin variants. Biochemistry 1994; 33:7600-8. [PMID: 8011626 DOI: 10.1021/bi00190a013] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The interaction of azide with variants of horse heart myoglobin (Mb) has been characterized by Fourier transform infrared (FTIR), electron paramagnetic resonance (EPR), and UV-VIS absorption spectroscopy and by molecular modeling calculations. Distal histidine variants (His64Thr, His64Ile, His64Lys) and charged surface variants (Val67Arg, Lys45Glu, Lys45Glu/Lys63Glu) were included in this study. All variants, with the exception of Val67Arg, have a lower azide affinity than the wild-type protein. Analysis of the temperature dependence of the FTIR spectra (277-313 K) revealed that the wild-type protein and all variants exhibit a high-spin/low-spin equilibrium. Introduction of positively charged amino acid residues shifts nu max for the low-spin form to higher energy while negatively charged residues shifted this maximum to lower energy. The low azide binding affinity exhibited by the His64Thr and His64Ile variants is accompanied by a shift of the nu max for the low-spin infrared band to lower energy and by a significant increase in the corresponding half-bandwidths. This observation indicates greater mobility of the bound azide ligand in these variants. The His64Lys variant exhibits two infrared bands attributable to low-spin forms that are assigned to two different conformations of the lysyl residue. In one conformation, the lysine is proposed to form a hydrogen bond with the bound azide similar to that proposed to occur between the distal histidine and bound azide, and in the other conformation no interaction occurs.
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Affiliation(s)
- R Bogumil
- Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, Canada
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22
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Feis A, Marzocchi MP, Paoli M, Smulevich G. Spin state and axial ligand bonding in the hydroxide complexes of metmyoglobin, methemoglobin, and horseradish peroxidase at room and low temperatures. Biochemistry 1994; 33:4577-83. [PMID: 8161513 DOI: 10.1021/bi00181a019] [Citation(s) in RCA: 106] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
Absorption and resonance Raman spectra using Soret excitation of alkaline metmyoglobin (metMb), methemoglobin (metHb), and horseradish peroxidase (HRP) were obtained at room and low temperature. At 298 K both metMb and metHb exhibit two isotope-sensitive bands assigned to high- and low-spin nu(Fe-OH) stretching modes, respectively, which are correlated with the spin-state population. The low-spin stretch occurs 60 cm-1 to higher energy than the corresponding high-spin vibration. When the temperature is lowered, only the low-spin species is observed. HRP exhibits at both 298 and 20 K only the low-spin nu(Fe-OH) stretching mode, which occurs 50 cm-1 to lower energy than the corresponding modes observed in the globins. This is explained in the context of a strong hydrogen bond between the hydroxyl ligand and the distal His42 and/or Arg38. Lowering temperature causes in all of the examined proteins a strengthening of the Fe-OH bond and a contraction of the core of about 0.01 A, as determined by the upshifting of the low-spin nu(Fe-OH) stretching mode and the core size marker bands. Both effects are ascribed to an increase of the packing forces.
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Affiliation(s)
- A Feis
- Università di Firenze, Dipartimento di Chimica, Italy
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23
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Rifkind JM, Abugo O, Levy A, Heim J. Detection, formation, and relevance of hemichromes and hemochromes. Methods Enzymol 1994; 231:449-80. [PMID: 8041268 DOI: 10.1016/0076-6879(94)31030-0] [Citation(s) in RCA: 84] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- J M Rifkind
- Laboratory of Cellular and Molecular Biology, National Institutes of Health, National Institute on Aging, Baltimore, Maryland 21224
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24
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Takahashi S, Wang J, Rousseau D, Ishikawa K, Yoshida T, Host J, Ikeda-Saito M. Heme-heme oxygenase complex. Structure of the catalytic site and its implication for oxygen activation. J Biol Chem 1994. [DOI: 10.1016/s0021-9258(17)42212-5] [Citation(s) in RCA: 60] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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25
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Yamamoto Y, Suziki T, Hori H. Dynamics and thermodynamics of acid-alkaline transitions in metmyoglobins lacking the usual distal histidine residue. BIOCHIMICA ET BIOPHYSICA ACTA 1993; 1203:267-75. [PMID: 8268210 DOI: 10.1016/0167-4838(93)90093-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The kinetics of the acid-alkaline transition in the ferric myoglobins from the gastropodic mollusc Dolabella auricularia and the shark Mustelus japonicus, which possess the distal Val E7 and Gln E7, respectively, has been investigated using the paramagnetic 1H-NMR saturation transfer measurements in order to gain insight into functional properties of these non-His distal residues. Both myoglobins possess the penta-coordinated heme below the pK of the transition (7.8 and 10.0 for Dolabella and Mustelus myoglobins, respectively) and bind OH- above the pK. The pH dependence of the transition rates and the relatively high activation barrier (58 +/- 9 kJ/mol) for the dissociation of the Fe-bound OH- in Dolabella myoglobin indicate a strong interaction between the bound ligand and the guanidino NH proton of the Arg E10 in Dolabella myoglobin. Such a strong interaction between Fe-bound OH- and the Arg E10 side-chain in Dolabella myoglobin is also manifested in the EPR spectra. For Mustelus myoglobin, the pH and temperature dependence studies on the kinetics strongly suggest that the distal Gln E7 in this myoglobin does not contribute significantly to stabilize the Fe-bound ligand.
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Affiliation(s)
- Y Yamamoto
- Department of Biomolecular Engineering, Tokyo Institute of Technology, Yokohama, Japan
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26
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27
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Abstract
Fluoride association with ferric myoglobins and hemoglobins in aqueous buffers above freezing has been well studied. We chose this reaction to investigate the feasibility of observing titration intermediates and estimating dissociation constants at the freezing temperature by electron paramagnetic resonance spectroscopy at cryogenic temperatures. Dependence of apparent dissociation constant upon protein concentration was observed, a factor of four decrease in protein accompanied by about a fourfold increase in the apparent tightness of binding in the range of protein concentration studied. Binding was also found to depend upon cooling rate and concentration of additives (serum albumin, sucrose, glycerol). These effects appear to be associated with freezing-induced concentration of ligand, a process described in the literature. Bands of high concentration of electrolyte accompany solute rejection during ice growth, sweeping by slowing moving macromolecules. Thus, just before being trapped in the solid, the protein can experience a greater concentration of salt than in the original liquid. A mathematical model of this process, based upon simplifying assumptions about nucleation and ice-crystal growth rates in super-cooled solution, shows how the average concentration of mobile solute species can depend upon the concentration of all species present. Semiquantitative computer simulations of the actual, more complex, freezing are also presented and lead to estimates of ice particle size which are then compared with estimates from the former model.
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Affiliation(s)
- A S Yang
- Department of Physics, University of Virginia, Charlottesville 22901
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28
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Stephanos JJ, Addison AW. Thermochromism of heme adducts of Glycera hemoglobin and some other monomeric heme proteins. J Inorg Biochem 1990; 39:351-69. [PMID: 2167947 DOI: 10.1016/0162-0134(90)80033-t] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The thermally induced difference spectra of myoglobin (Mb) and Glycera dibranchiata hemoglobin (Hbm) derivatives and of cytochrome-c were recorded between 4 degrees and 30 degrees C in the 390-750 nm range. Thermodynamic parameters were estimated and upper and lower temperature limiting spectra were deduced for the various heme protein derivatives' equilibria. The effective iron d-electron population divides the hemes broadly into two different groups of behavior type. In the first group, Hbm(III)N3, Hbm(III), Mb(III)(H2O), and Cytc(III) show equilibria between two spin states. The weakest coupling between the heme and the globin occurs among the second group, for Hbm(II)CO and Mb(II)CO, which in the higher temperature limit undergoes averaging of the carbonyl tilt, while an axially elongated geometry is probably accessed for Hbm(II)NO and Mb(II)NO. Examples of the less common situation of increased absorption intensity and/or low-spin states at higher temperature were found in both groups. In the case of the methyl thioglycolate low-spin adducts of Hbm(III), an acid/base equilibrium involving thioglycolate deprotonation occurs. Apparent enthalpy-entropy compensation is exhibited by all these heme derivatives, and it is suggested that the delta H degrees and delta S degrees values relate to the intimacy of coupling between the heme structure and the solvent-dependent microconformation of the globin.
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Affiliation(s)
- J J Stephanos
- Department of Chemistry, Drexel University, Philadelphia, Pennsylvania 19104
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29
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Colombo MF, Sanches R. Hydration-dependent conformational states of hemoglobin. Equilibrium and kinetic behavior. Biophys Chem 1990; 36:33-9. [PMID: 2207271 DOI: 10.1016/0301-4622(90)85004-p] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The equilibrium and kinetics of methemoglobin conversion to hemichrome induced by dehydration were investigated by visible absorption spectroscopy. Below about 0.20 g water per g hemoglobin only hemichrome was present in the sample; above this value, an increasing proportion of methemoglobin appeared with the increase in hydration. The transition between the two derivatives showed a time-dependent biphasic behavior and was observed to be reversible. The rates obtained for the transition of methemoglobin to hemichrome were 0.31 and 1.93 min-1 and for hemichrome to methemoglobin 0.05 and 0.47 min-1. We suggest that hemichrome is a reversible conformational state of hemoglobin and that the two rates observed for the transition between the two derivatives reflect the alpha- and beta-chains of hemoglobin.
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Affiliation(s)
- M F Colombo
- Instituto de Biociências, Letras e Ciências Exatas, UNESP, S. José do Rio Preto, Brazil
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30
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The use of a superconducting magnetometer to measure spin equilibria in hemoglobin. J Mol Liq 1989. [DOI: 10.1016/0167-7322(89)80032-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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31
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Yamamoto Y, La Mar GN. Proton NMR investigation of the influence of subunit assembly on the low-spin in equilibrium high-spin equilibrium of met-azido hemoglobin A. BIOCHIMICA ET BIOPHYSICA ACTA 1989; 996:187-94. [PMID: 2546603 DOI: 10.1016/0167-4838(89)90246-x] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The 1H nuclear magnetic resonance signals for the side-chain labile protons of the proximal His-F8 in met-azido derivatives of the isolated chains and intact tetramer of hemoglobin have been identified. Assignment of the two peaks to the individual subunits of the intact tetramer was effected by the basis of the strong similarity of shift of one of the two peaks to that of met-azido semi-hemoglobin, where hemes occupy primarily the alpha subunits, with the heme cavity vacant in the adjacent beta subunits. The magnitudes of the hyperfine shift for both the His-F8 ring NH and the heme methyls reflect the degree of high-spin character in the thermal spin equilibrium between the high-spin, S = 5/2, and low-spin, S = 1/2, states. The changes in these shifts upon tetramer assembly demonstrate that formation of the intersubunit contacts in the R-state met-azido hemoglobin from the isolated chains causes a slight decrease in high-spin character of the alpha (22 to 20%) and a marked increase (5 to 11%) in the high-spin character of the beta subunits. The changes in spin-character are interpreted in terms of slight increase and decrease in the strength of the iron-His F8 bond upon tetramer assembly in the alpha and beta subunits, respectively. These changes in axial bonding upon forming R-state intersubunit contacts are consistent with previous observation on forming the R-state deoxy Hb tetramer from the isolated chains (Nagai, K., La Mar, G.N., Jue, T. and Bunn, H.F. (1982) Biochemistry 21, 842-847).
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Affiliation(s)
- Y Yamamoto
- Department of Chemistry, University of California, Davis 95616
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32
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Steinhoff HJ, Lieutenant K, Redhardt A. Conformational transition of aquomethemoglobin: intramolecular histidine E7 binding reaction to the heme iron in the temperature range between 220 K and 295 K as seen by EPR and temperature-jump measurements. BIOCHIMICA ET BIOPHYSICA ACTA 1989; 996:49-56. [PMID: 2544230 DOI: 10.1016/0167-4838(89)90093-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Temperature-dependent EPR and temperature-jump measurements have been carried out, in order to examine the high-spin to low-spin transition of aquomethemogobin (pH 6.0). Relaxation rates and equilibrium constants could be determined as a function of temperature. As a reaction mechanism for the high-spin to low-spin transition, the binding of N epsilon of His E7 to the heme iron had been proposed; the same mechanism had been suggested for the ms-effect, found in temperature-jump experiments on aquomethemoglobin. A comparison of the thermodynamic quantities, deduced form the measurements in this paper, gives evidence that indeed the same reaction is investigated in both cases. Our results and most of the findings of earlier studies on the spin-state transitions of aquomethemoglobin, using susceptibility, optical, or EPR measurements, can be explained by the transition of methemoglobin with H2O as ligand (with high-spin state at all temperatures) and methemoglobin with ligand N epsilon of His E7 (with a low-spin ground state). Thermal fluctuations of large amplitude have to be postulated for the reaction to take place, so this reaction may be understood as a probe for the study of protein dynamics.
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Affiliation(s)
- H J Steinhoff
- Institut für Biophysik, Ruhr-Universität Bochum, F.R.G
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33
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Rousseau DL, Ching YC, Brunori M, Giacometti GM. Axial coordination of ferric Aplysia myoglobin. J Biol Chem 1989. [DOI: 10.1016/s0021-9258(18)83125-8] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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34
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Pin S, Le Tilly V, Alpert B, Cortes R. XANES spectroscopy sensitivity to small electronic changes. Case of carp azidomethemoglobin. FEBS Lett 1989; 242:401-4. [PMID: 2914617 DOI: 10.1016/0014-5793(89)80510-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Spin states equilibrium of hemoglobin-iron varies with external conditions: pH, allosteric effectors, temperature. The small electronic reorganization of the iron caused by the spin state changes has been detected by X-ray absorption near edge structure (XANES) spectroscopy at room temperature. The iron K-edge region which is sensitive to spin state is located in 7110-7130 eV. Here are presented the 100% high spin and 100% low spin XANES spectra of carp azido ferric hemoglobin.
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Affiliation(s)
- S Pin
- Laboratoire de Biologie Physico-Chimique, Université Paris VII, France
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35
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36
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Okazaki M, Maeda N, Shiga T. Effects of an inhomogeneous magnetic field on flowing erythrocytes. EUROPEAN BIOPHYSICS JOURNAL : EBJ 1987; 14:139-45. [PMID: 3830092 DOI: 10.1007/bf00253838] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Effects of an inhomogeneous magnetic field on narrow erythrocyte streams in a wide and transparent laminar buffer flow were studied. The stream line of erythrocytes containing paramagnetic hemoglobin showed distinct displacement toward the stronger magnetic field. The displacement increased in the order, oxygenated erythrocytes (no displacement), erythrocytes containing cyanomethemoglobin, deoxygenated erythrocytes, erythrocytes containing methemoglobin in the high spin state; more precisely the displacement was proportional to the square of the paramagnetic moment of hemoglobin contained in the erythrocytes. In addition, the displacement was proportional to the product of the magnetic flux density and its gradient, and approximately proportional to the hematocrit of the flowing-erythrocyte suspension, and was much larger than that calculated for a single erythrocyte. These phenomena could be successfully interpreted by the interaction of paramagnetic erythrocytes with the inhomogeneous magnetic field, the resistance force (Stokes Law) from the bulk water, and the hydrodynamic interaction between erythrocytes.
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37
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Neya S, Funasaki N. Proton nuclear magnetic resonance investigation of the spin-state equilibrium of the alpha and beta subunits in intact azidomethemoglobin. Biochemistry 1986; 25:1221-6. [PMID: 3964673 DOI: 10.1021/bi00354a005] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
The hyperfine-shifted proton NMR spectra of human azidomethemoglobin were examined at 300 MHz in the 2-60 degree C range. From analysis of the temperature-dependent heme methyl shifts, the thermal spin-state equilibria of the alpha and beta subunits were independently analyzed in the intact tetramer. The thermodynamic values of the spin equilibrium of the alpha and beta subunits were comparable, suggesting that the spin equilibrium properties of the constituent subunits are similar to each other. Examination of the azidomethemoglobins reconstituted with deutero- or mesohemin further shows that the alpha and beta subunit difference is still small in these hemoglobins probably due to the smallness of the steric and electronic difference of the heme 2,4-substituents of the examined porphyrins. The similarity of the spin equilibrium profiles of the subunits indicates that the strain imposed from the globin to the heme iron is of comparable magnitude for the alpha and beta subunits within the azidomethemoglobins.
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38
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Quantitative analysis of magnetic properties of bis(tetrahydrofuran)octaethylporphyrinatoiron(III)perchlorate. a pure S = 32 iron(III) porphyrin. Chem Phys Lett 1986. [DOI: 10.1016/0009-2614(86)85042-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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39
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40
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Modulation by alcohol molecules of ferrihemoglobin electronic spin state and crystal field symmetry. Chem Phys Lett 1985. [DOI: 10.1016/0009-2614(85)85500-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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41
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Henry ER, Rousseau DL, Hopfield JJ, Noble RW, Simon SR. Spectroscopic studies of protein-heme interactions accompanying the allosteric transition in methemoglobins. Biochemistry 1985; 24:5907-18. [PMID: 4084499 DOI: 10.1021/bi00342a033] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Resonance Raman, optical absorption, and circular dichroism spectroscopic techniques have been used to examine the effect of the addition of inositol hexaphosphate (IHP) to a series of carp and human methemoglobin derivatives. Markers of spin equilibrium in the high-frequency region (1450-1650 cm-1) of the resonance Raman spectrum yield high/low-spin ratios consistent with direct magnetic susceptibility measurements. Changes in the low-frequency region (100-600 cm-1) of the resonance Raman spectrum appear to correlate with the quaternary structure transition. Changes in the ultraviolet absorption spectra and the circular dichroism spectra also appear to be related to the quaternary structure change. By using the resonance Raman spin markers, we find that those derivatives of carp methemoglobin which are in spin equilibrium have a larger ratio of high-spin to low-spin populations than the corresponding derivatives of human methemoglobin. Upon the addition of IHP to the methemoglobins the spin equilibrium is shifted toward a larger high-spin population. This change in equilibrium is larger for the carp protein than for the human protein. We obtain an IHP-induced change in the free energy difference between the high-spin and low-spin states of 300 cal/mol for those human methemoglobins in which a quaternary structure change occurs and 600 cal/mol for carp methemoglobins. Our data are consistent with a quaternary structure change induced by IHP in all the carp methemoglobins studied (F-, H2O, SCN-, NO2-, N3-, and CN-) and in the F-, H2O, and SCN- derivatives of the human protein but not in the NO2-, N3-, and CN- derivatives. The Fe-CN stretching mode has been identified by isotopic substitution and found to be unchanged in frequency in carp CN- metHb when the quaternary structure is changed. On the basis of our results we conclude that the protein forces at the heme due to the addition of IHP do not significantly affect the position of the iron atom with respect to the heme plane. Rather, the changes in spin equilibrium may be caused by protein-induced changes in the orientation of the proximal histidine or tertiary structure changes in the heme pocket which affect the porphyrin macrocycle. Either of these changes, or a combination thereof, leads to changes in the iron d orbital energies and concomitant changes in the spin equilibrium.
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42
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Neya S, Hada S, Funasaki N. Thermochromism of the azide complexes of ferric hemoproteins. ACTA ACUST UNITED AC 1985. [DOI: 10.1016/0167-4838(85)90303-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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43
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Neya S, Hada S, Funasaki N, Umemura J, Takenaka T. Spin-state equilibrium in the model complexes of azide hemoprotein. BIOCHIMICA ET BIOPHYSICA ACTA 1985; 827:157-63. [PMID: 3967035 DOI: 10.1016/0167-4838(85)90085-8] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Addition of NaN3 to ferric protohemin biscoordinated with 1-methylimidazole (1-MeIm) or 2-methylimidazole (2-MeIm) in (CH3)2SO resulted in sizeable visible absorption changes, corresponding to the formation of the mixed ligand complexes, hemin X N-3 X 1-MeIm and hemin X N-3 X 2-MeIm. The visible absorption spectrum of the 1-MeIm complex was closely similar to those of azide hemoproteins, while the 2-MeIm derivative exhibited intensified 500 and 625 nm bands and depressed 540 and 570 nm peaks. The iron-bound N-3 of the model complexes exhibited two infrared stretching bands, which were assigned to the high- and low-spin peaks. The intensity of the high-spin infrared peaks increased at higher temperature. From the analyses of the infrared spectral changes, the thermodynamic values of the thermal spin equilibria were determined to be delta H = -3920 cal/mol and delta S = -11.1 e.u. for hemin X N-3 X 1-MeIm and delta H = -2150 cal/mol and delta S = 7.9 e.u. for hemin X N-3 X 2-MeIm. The thermodynamic values of the 1-MeIm complex are similar to the reported values for azide metmyoglobin, suggesting that the contribution from the nonbonded porphyrin-globin contacts to the spin equilibrium is small in azide metmyoglobin. Comparison of the delta H and delta S values among model systems indicates that delta H and delta S compensation similar to that observed in hemoprotein also holds in the models. This may suggest an underlying common denominator for the spin-equilibrium mechanisms in hemins and hemoproteins.
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44
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Sono M, Dawson JH. Extensive studies of the heme coordination structure of indoleamine 2,3-dioxygenase and of tryptophan binding with magnetic and natural circular dichroism and electron paramagnetic resonance spectroscopy. BIOCHIMICA ET BIOPHYSICA ACTA 1984; 789:170-87. [PMID: 6089893 DOI: 10.1016/0167-4838(84)90202-4] [Citation(s) in RCA: 53] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
In order to probe the active site of the heme protein indoleamine 2,3-dioxygenase, magnetic and natural circular dichroism (MCD and CD) and electron paramagnetic resonance (EPR) studies of the substrate (L-tryptophan)-free and substrate-bound enzyme with and without various exogenous ligands have been carried out. The MCD spectra of the ferric and ferrous derivatives are similar to those of the analogous myoglobin and horseradish peroxidase species. This provides strong support for histidine imidazole as the fifth ligand to the heme iron of indoleamine 2,3-dioxygenase. The substrate-free native ferric enzyme exhibits predominantly high-spin EPR signals (g perpendicular = 6, g parallel = 2) along with weak low-spin signals (g perpendicular = 2.86, 2.28, 1.60); similar EPR, spin-state and MCD features are found for the benzimidazole adduct of ferric myoglobin. This suggests that the substrate-free ferric enzyme has a sterically hindered histidine imidazole nitrogen donor sixth ligand. Upon substrate binding, noticeable MCD and EPR spectral changes are detected that are indicative of an increased low spin content (from 30 to over 70% at ambient temperature). Concomitantly, new low spin EPR signals (g = 2.53, 2.18, 1.86) and MCD features characteristic of hydroxide complexes of histidine-ligated heme proteins appear. For almost all of the other ferric and ferrous derivatives, only small substrate effects are observed with MCD spectroscopy, while substantial substrate effects are seen with CD spectroscopy. Thus, changes in the heme coordination structure of the ferric enzyme and in the protein conformation at the active site of the ferric and ferrous enzyme are induced by substrate binding. The observed substrate effects on the ferric enzyme may correlate with the previously observed kinetic substrate inhibition of indoleamine 2,3-dioxygenase activity, while such effects on the ferrous enzyme suggest the possibility that the substrate is activated during turnover.
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45
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Anusiem AC, Kelleher M. Analysis of the high- and low-spin Soret bands of horse-heart metmyoglobin complexes. Biopolymers 1984; 23:1147-67. [PMID: 6466762 DOI: 10.1002/bip.360230702] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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46
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Abstract
The spin characteristics of the ferric heme groups in native beef liver catalase, and in the complexes formed by reaction with fluoride, cyanide, azide, thiocyanate, and cyanate ions have been studied using absorption spectroscopy over the temperature range of 4-285 K. The azide, isothiocyanate, and isocyanate complexes of catalase are considered to be high-spin ferric heme complexes at room temperature, but undergo a thermal spin change below 300 K. The temperature dependence of these absorption spectra, however, cannot be analyzed in terms of simple Boltzmann distributions between two S = 1/2 and S = 5/2 spin states. The data show that these spin changes occur over a very narrow temperature range, but do not result in the formation of completely, low-spin complexes. The data also suggest that the thermal spin changes that occur below the glassing temperature of the solvent are dependent upon the conformational changes which take place within the protein itself with a change in temperature, and which directly affect the environment of the heme group.
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47
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Cerdonio M, Morante S, Vitale S, Dalvit C, Russu IM, Ho C, de Young A, Noble RW. Magnetic and spectral properties of carp carbonmonoxyhemoglobin. Competitive effects of chloride ions and inositol hexakisphosphate. EUROPEAN JOURNAL OF BIOCHEMISTRY 1983; 132:461-7. [PMID: 6852007 DOI: 10.1111/j.1432-1033.1983.tb07384.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
We have extended our studies on the magnetic properties of carp carbonmonoxyhemoglobin and the dependence of these properties upon solution variables. Using an improved version of the superconducting magnetometer, we have found that the magnetic susceptibility of carp carbonmonoxyhemoglobin is sensitive to both inositol hexakisphosphate and chloride ion. The dependence upon chloride ion concentration is complex. At relatively low concentrations this anion reverses the effect of inositol hexakisphosphate, restoring paramagnetism. At higher chloride concentrations the protein is converted to a roughly diamagnetic state in the absence of inositol hexakisphosphate. Along with these susceptibility studies, we have examined the effects of these anions on other properties of carp carbonmonoxyhemoglobin. The positions of the Soret bands of human and carp methemoglobin derivatives are correlated with spin state; changes in the magnetic susceptibility of carbonmonoxyhemoglobin are similarly associated with alterations in this spectral band. We have also examined the effects of these anions on the proton nuclear magnetic resonance spectrum of carp carbonmonoxyhemoglobin. Both chloride and inositol hexakisphosphate alter the position of the proton resonances in the ring-current-shifted region of the spectrum.
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Cho KC, Poon HT, Choy CL. The thermodynamics of myoglobin stability. Effects of axial ligand. BIOCHIMICA ET BIOPHYSICA ACTA 1982; 701:206-15. [PMID: 7074109 DOI: 10.1016/0167-4838(82)90115-7] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
The reversible thermal denaturation of four metmyoglobin derivatives, aquomet, cyanomet, azidomet and fluoromet in both the alkaline pH and acidic pH region, has been examined by optical spectrophotometry. The data are analyzed in terms of a two-state model to extract the thermodynamic parameters delta G, delta H, delta S and delta Cp characterizing the transition. The results are consistent with Brandts' phenomenological model of protein denaturation. Among the derivatives examined, cyanomet, azidomet and fluoromet are about 3 kcal/mol, 2 kcal/mol and 0.2 kcal/mol, respectively, more stable than aquometmyoglobin. The observed differences are found to be inconsistent with the hypothesis that the stability is mainly governed by the spin state of the iron atom. In addition, the enthalpic and entropic contributions in delta G are extracted and the differences in delta G for the various derivatives are found to arise from minor changes in delta H and T delta S. Assuming the final denaturated state to be universal, these changes reflect the effect of ligands on the conformational energy of the native protein.
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49
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Asher SA, Schuster TM. Differences in iron-fluoride bonding between the isolated subunits of human methemoglobin fluoride and sperm whale metmyoglobin fluoride as measured by resonance Raman spectroscopy. Biochemistry 1981; 20:1866-73. [PMID: 7225362 DOI: 10.1021/bi00510a023] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
The heme geometries of the isolated alpha and beta subunits of human methemoglobin fluoride (HbIIIF) and sperm whale metmyoglobin fluoride (MbIIIF) have been examined by exciting their Raman spectra within their ca. 6000-A charge-transfer absorption bands. The Fe-F stretching vibration at 471 cm-1 in the beta subunits shifts to 466 cm-1 in the alpha subunits and to 461 cm-1 in MbIIIF. The Fe-F bond is estimated to elongate by 0.02 A in the alpha subunits and 0.03 AZ in MbIIIF compared with that in the beta subunits. This bond elongation is interpreted to result from an increased iron displacement toward the proximal histidine side of the heme in the series MbIIIF greater than alpha greater than beta. A comparison of the isolated subunit spectra with that of tetrameric HbIIIF indicates little change occurs in isolated subunit heme geometry upon association into tetrameric HbIIIF. A correlation is found between the gamma max of the 600-A charge-transfer absorption band and the Fe-F bond length. Elongation of the Fe-F bond is associated with a shift of the absorption spectral maximum to a longer wavelength. However, the absorption spectral shift induced by the inositsol hexaphosphate induced R leads to T conversion does not result from a change in the Fe-F stretching frequency (+/- 0.5 cm-1). In contrast, frequency shifts are observed for heme macrocyclic vibrational modes. The data are interpreted to indicate that the effect of the R leads to T conversion in HbIIIF is to perturb heme macrocycle conformation without altering the heme out-of-plane iron distance or the Fe-F bond length.
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Cho KC, Remba RD, Fitchen DB. Resonance Raman studies of methemoglobin derivatives at room temperature and 77 K. BIOCHIMICA ET BIOPHYSICA ACTA 1981; 668:186-92. [PMID: 7236705 DOI: 10.1016/0005-2795(81)90162-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
Raman spectra in preresonance with the Soret absorption band are reported for the following methemoglobin derivatives: cyanide, cyanate, thiocyanate, hydroxy-, azide, and fluoride methemoglobin at 285 K and 77 K. For the mixed-spin derivatives, Raman intensity is observed to shift from the high-spin marker band (approx. 1480 cm-1) to the low-spin marker band (approx. 1505 cm-1) upon cooling to 77 K. In addition, Raman spectra of cyanate methemoglobin were taken as a function of temperature, and the log of the intensity ratio I1480/I1505 was found to be a linear function of 1/T, indicating a thermally activated process. We interpret these results as observations of temperature-induced spin transitions. In the case of cyanate methemoglobin we find the enthalpy and entropy differences between the high-spin and low-spin states to be deltaH = 600 +/- 40 cal x mol-1 and deltaS = 4.7 +/- 0.7 cal x mol-1 x K-1. The high-spin to low-spin ratio for cyanate methemoglobin determined by our experiment disagrees with the value reported for magnetic susceptibility measurements.
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