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Colby RS, McCormick SD, Velotta JP, Jockusch E, Schultz ET. Paralog switching facilitates diadromy: ontogenetic, microevolutionary and macroevolutionary evidence. Oecologia 2024:10.1007/s00442-024-05588-x. [PMID: 39012384 DOI: 10.1007/s00442-024-05588-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2023] [Accepted: 07/01/2024] [Indexed: 07/17/2024]
Abstract
Identifying how the demands of migration are met at the level of gene expression is critical for understanding migratory physiology and can potentially reveal how migratory forms evolve from nonmigratory forms and vice versa. Among fishes, migration between freshwater and seawater (diadromy) requires considerable osmoregulatory adjustments, powered by the ion pump Na+, K+-ATPase (NKA) in the gills. Paralogs of the catalytic α-subunit of the pump (NKA α1a and α1b) are reciprocally upregulated in fresh- and seawater, a response known as paralog-switching, in gills of some diadromous species. We tested ontogenetic changes in NKA α-subunit paralog expression patterns, comparing pre-migrant and migrant alewife (Alosa pseudoharengus) sampled in their natal freshwater environment and after 24 h in seawater. In comparison to pre-migrants, juvenile out-migrants exhibited stronger paralog switching via greater downregulation of NKA α1a in seawater. We also tested microevolutionary changes in the response, exposing juvenile diadromous and landlocked alewife to freshwater (0 ppt) and seawater (30 ppt) for 2, 5, and 15 days. Diadromous and landlocked alewife exhibited salinity-dependent paralog switching, but levels of NKA α1b transcription were higher and the decrease in NKA α1a was greater after seawater exposure in diadromous alewife. Finally, we placed alewife α-subunit NKA paralogs in a macroevolutionary context. Molecular phylogenies show alewife paralogs originated independently of paralogs in salmonids and other teleosts. This study demonstrated that NKA paralog switching is tied to halohabitat profile and that duplications of the NKA gene provided the substrate for multiple, independent molecular solutions that support a diadromous life history.
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Affiliation(s)
- Rebecca S Colby
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA
- Institutional Research and Planning, Fitchburg State University, Fitchburg, MA, USA
| | - Stephen D McCormick
- Department of Biology, University of Massachusetts, Amherst, MA, USA
- Department of Environmental Conservation, University of Massachusetts Amherst, Amherst, MA, USA
| | - Jonathan P Velotta
- Department of Biological Sciences, University of Denver, Denver, CO, USA
| | - Elizabeth Jockusch
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA
| | - Eric T Schultz
- Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, USA.
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Holbert S, Colbourne K, Fisk AT, Ross PS, MacDuffee M, Gobas FAPC, Brown TM. Polychlorinated biphenyl and polybrominated diphenyl ether profiles vary with feeding ecology and marine rearing distribution among 10 Chinook salmon (Oncorhynchus tshawytscha) stocks in the North Pacific Ocean. ENVIRONMENTAL RESEARCH 2024; 241:117476. [PMID: 37879388 DOI: 10.1016/j.envres.2023.117476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 10/20/2023] [Accepted: 10/21/2023] [Indexed: 10/27/2023]
Abstract
Chinook salmon (Oncorhynchus tshawytscha) along the west coast of North America have experienced significant declines in abundance and body size over recent decades due to several anthropogenic stressors. Understanding the reasons underlying the relatively high levels of persistent organic pollutants (POPs) in Chinook stocks is an important need, as it informs recovery planning for this foundation species, as well for the Chinook-dependent Resident killer whales (Orcinus orca, RKW) of British Columbia (Canada) and Washington State (USA). We evaluated the influence of stock-related differences in feeding ecology, using stable isotopes, and marine rearing ground on the concentrations and patterns of polychlorinated biphenyls (PCBs) and polybrominated diphenyl ethers (PBDEs) in Chinook salmon. A principal components analysis (PCA) revealed a clear divergence of PCB and PBDE congener patterns between Chinook with a nearshore rearing distribution ('shelf resident') versus a more offshore distribution. Shelf resident Chinook had 12-fold higher PCB concentrations and 46-fold higher PBDE concentrations relative to offshore stocks. Shelf resident Chinook had PCB and PBDE profiles that were heavier and dominated by more bioaccumulative congeners, respectively. The higher δ13C and δ15N in shelf resident Chinook compared to the offshore rearing stocks, and their different marine distributions explain the large divergence in contaminant levels and profiles, with shelf resident stocks being heavily influenced by land-based sources of industrial contamination. Results provide compelling new insight into the drivers of contaminant accumulation in Chinook salmon, raise important questions about the consequences for their health, and explain a major pathway to the heavily POP-contaminated Resident killer whales that consume them.
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Affiliation(s)
- S Holbert
- School of Resource and Environmental Management, Simon Fraser University, Burnaby, BC, Canada; Pacific Science Enterprise Centre, Fisheries and Oceans Canada, West Vancouver, BC, Canada
| | - K Colbourne
- Pacific Science Enterprise Centre, Fisheries and Oceans Canada, West Vancouver, BC, Canada
| | - A T Fisk
- School of the Environment, University of Windsor, Windsor, ON, Canada
| | - P S Ross
- Raincoast Conservation Foundation, Sidney, BC, Canada
| | - M MacDuffee
- Raincoast Conservation Foundation, Sidney, BC, Canada
| | - F A P C Gobas
- School of Resource and Environmental Management, Simon Fraser University, Burnaby, BC, Canada
| | - T M Brown
- School of Resource and Environmental Management, Simon Fraser University, Burnaby, BC, Canada; Pacific Science Enterprise Centre, Fisheries and Oceans Canada, West Vancouver, BC, Canada; School of the Environment, University of Windsor, Windsor, ON, Canada.
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3
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Barta N, Ördög N, Pantazi V, Berzsenyi I, Borsos BN, Majoros H, Páhi ZG, Ujfaludi Z, Pankotai T. Identifying Suitable Reference Gene Candidates for Quantification of DNA Damage-Induced Cellular Responses in Human U2OS Cell Culture System. Biomolecules 2023; 13:1523. [PMID: 37892205 PMCID: PMC10605043 DOI: 10.3390/biom13101523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 10/09/2023] [Accepted: 10/11/2023] [Indexed: 10/29/2023] Open
Abstract
DNA repair pathways trigger robust downstream responses, making it challenging to select suitable reference genes for comparative studies. In this study, our goal was to identify the most suitable housekeeping genes to perform comparable molecular analyses for DNA damage-related studies. Choosing the most applicable reference genes is important in any kind of target gene expression-related quantitative study, since using the housekeeping genes improperly may result in false data interpretation and inaccurate conclusions. We evaluated the expressional changes of eight well-known housekeeping genes (i.e., 18S rRNA, B2M, eEF1α1, GAPDH, GUSB, HPRT1, PPIA, and TBP) following treatment with the DNA-damaging agents that are most frequently used: ultraviolet B (UVB) non-ionizing irradiation, neocarzinostatin (NCS), and actinomycin D (ActD). To reveal the significant changes in the expression of each gene and to determine which appear to be the most acceptable ones for normalization of real-time quantitative polymerase chain reaction (RT-qPCR) data, comparative and statistical algorithms (such as absolute quantification, Wilcoxon Rank Sum Test, and independent samples T-test) were conducted. Our findings clearly demonstrate that the genes commonly employed as reference candidates exhibit substantial expression variability, and therefore, careful consideration must be taken when designing the experimental setup for an accurate and reproducible normalization of RT-qPCR data. We used the U2OS cell line since it is generally accepted and used in the field of DNA repair to study DNA damage-induced cellular responses. Based on our current data in U2OS cells, we suggest using 18S rRNA, eEF1α1, GAPDH, GUSB, and HPRT1 genes for UVB-induced DNA damage-related studies. B2M, HPRT1, and TBP genes are recommended for NCS treatment, while 18S rRNA, B2M, and PPIA genes can be used as suitable internal controls in RT-qPCR experiments for ActD treatment. In summary, this is the first systematic study using a U2OS cell culture system that offers convincing evidence for housekeeping gene selection following treatment with various DNA-damaging agents. Here, we unravel an indispensable issue for performing and assessing trustworthy DNA damage-related differential gene expressional analyses, and we create a "zero set" of potential reference gene candidates.
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Affiliation(s)
- Nikolett Barta
- Department of Pathology, Albert Szent-Györgyi Medical School, University of Szeged, Állomás utca 1, H-6725 Szeged, Hungary; (N.B.); (N.Ö.); (V.P.); (I.B.); (B.N.B.); (H.M.); (Z.G.P.)
- Competence Centre of the Life Sciences Cluster of the Centre of Excellence for Interdisciplinary Research, Development and Innovation, University of Szeged, Dugonics tér 13, H-6720 Szeged, Hungary
| | - Nóra Ördög
- Department of Pathology, Albert Szent-Györgyi Medical School, University of Szeged, Állomás utca 1, H-6725 Szeged, Hungary; (N.B.); (N.Ö.); (V.P.); (I.B.); (B.N.B.); (H.M.); (Z.G.P.)
| | - Vasiliki Pantazi
- Department of Pathology, Albert Szent-Györgyi Medical School, University of Szeged, Állomás utca 1, H-6725 Szeged, Hungary; (N.B.); (N.Ö.); (V.P.); (I.B.); (B.N.B.); (H.M.); (Z.G.P.)
- Competence Centre of the Life Sciences Cluster of the Centre of Excellence for Interdisciplinary Research, Development and Innovation, University of Szeged, Dugonics tér 13, H-6720 Szeged, Hungary
| | - Ivett Berzsenyi
- Department of Pathology, Albert Szent-Györgyi Medical School, University of Szeged, Állomás utca 1, H-6725 Szeged, Hungary; (N.B.); (N.Ö.); (V.P.); (I.B.); (B.N.B.); (H.M.); (Z.G.P.)
- Competence Centre of the Life Sciences Cluster of the Centre of Excellence for Interdisciplinary Research, Development and Innovation, University of Szeged, Dugonics tér 13, H-6720 Szeged, Hungary
| | - Barbara N. Borsos
- Department of Pathology, Albert Szent-Györgyi Medical School, University of Szeged, Állomás utca 1, H-6725 Szeged, Hungary; (N.B.); (N.Ö.); (V.P.); (I.B.); (B.N.B.); (H.M.); (Z.G.P.)
| | - Hajnalka Majoros
- Department of Pathology, Albert Szent-Györgyi Medical School, University of Szeged, Állomás utca 1, H-6725 Szeged, Hungary; (N.B.); (N.Ö.); (V.P.); (I.B.); (B.N.B.); (H.M.); (Z.G.P.)
- Competence Centre of the Life Sciences Cluster of the Centre of Excellence for Interdisciplinary Research, Development and Innovation, University of Szeged, Dugonics tér 13, H-6720 Szeged, Hungary
| | - Zoltán G. Páhi
- Department of Pathology, Albert Szent-Györgyi Medical School, University of Szeged, Állomás utca 1, H-6725 Szeged, Hungary; (N.B.); (N.Ö.); (V.P.); (I.B.); (B.N.B.); (H.M.); (Z.G.P.)
- Competence Centre of the Life Sciences Cluster of the Centre of Excellence for Interdisciplinary Research, Development and Innovation, University of Szeged, Dugonics tér 13, H-6720 Szeged, Hungary
- Genome Integrity and DNA Repair Core Group, Hungarian Centre of Excellence for Molecular Medicine (HCEMM), University of Szeged, Budapesti út 9, H-6728 Szeged, Hungary
| | - Zsuzsanna Ujfaludi
- Department of Pathology, Albert Szent-Györgyi Medical School, University of Szeged, Állomás utca 1, H-6725 Szeged, Hungary; (N.B.); (N.Ö.); (V.P.); (I.B.); (B.N.B.); (H.M.); (Z.G.P.)
- Competence Centre of the Life Sciences Cluster of the Centre of Excellence for Interdisciplinary Research, Development and Innovation, University of Szeged, Dugonics tér 13, H-6720 Szeged, Hungary
| | - Tibor Pankotai
- Department of Pathology, Albert Szent-Györgyi Medical School, University of Szeged, Állomás utca 1, H-6725 Szeged, Hungary; (N.B.); (N.Ö.); (V.P.); (I.B.); (B.N.B.); (H.M.); (Z.G.P.)
- Competence Centre of the Life Sciences Cluster of the Centre of Excellence for Interdisciplinary Research, Development and Innovation, University of Szeged, Dugonics tér 13, H-6720 Szeged, Hungary
- Genome Integrity and DNA Repair Core Group, Hungarian Centre of Excellence for Molecular Medicine (HCEMM), University of Szeged, Budapesti út 9, H-6728 Szeged, Hungary
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Thambirajah AA, Miliano RC, Abbott EA, Buday C, Shang D, Kwok H, Helbing CC. Dynamic cyp1a1 transcript responses in the caudal fin of coho salmon (Oncorhynchus kisutch) smolts to low sulfur marine diesel water accommodated fraction exposures and depuration. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2023; 256:106412. [PMID: 36716652 DOI: 10.1016/j.aquatox.2023.106412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 01/24/2023] [Accepted: 01/26/2023] [Indexed: 06/18/2023]
Abstract
Oil spills that occur in high traffic coastal environments can have profound consequences for the health of marine ecosystems and the commercial and social interests that are dependent upon these habitats. Given that the global reliance on marine fuels is not abating, it is imperative to develop sensitive and robust tools to monitor oil contamination and remediation in a timely manner. Such tools are increasingly important for ascertaining the immediate and long-term effects of oil contamination on species of interest and local habitats as water-soluble components of oils, such as polycyclic aromatic hydrocarbons (PAHs), can persist post-remediation. We previously demonstrated that 3-methylcholanthrene responsive cytochrome P450-1a (cyp1a1) transcript abundance in the liver and caudal fin of coho salmon smolts (Onchorhynchus kisutch) was sensitive to exposure to low sulfur marine diesel (LSMD) seawater accommodated fractions (seaWAF) in cold water. We expanded upon this paradigm by assessing the utility of the cyp1a1 transcript to track both exposure to LSMD seaWAF and recovery from exposure by measuring cyp1a1 abundance in coho smolts using quantitative polymerase chain reaction (qPCR). Smolts were exposed to either 100 mg/L LSMD seaWAF or clean seawater (control) for 4 days. Fish were then transferred to clean seawater for depuration and tissues sampled at 0, 1, 2, 4, and 8 days from both treatments. Livers and caudal fins were dissected from 40 smolts per group (ntotal = 400 smolts). The LSMD seaWAF-induced cyp1a1 transcript levels significantly decreased one day after depuration in the liver and caudal fin in a sex-independent manner in genotyped females and males. After four days of depuration, cyp1a1 transcript abundance decreased to baseline control levels, regardless of tissue or sex. The present study demonstrates the value of using the caudal fin as a reliable, sensitive, and non-lethal sampling and monitoring tool.
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Affiliation(s)
- Anita A Thambirajah
- Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia V8P 5C2, Canada
| | - Rachel C Miliano
- Pacific & Yukon Laboratory for Environmental Testing, Pacific Environmental Science Centre, Environment and Climate Change Canada, North Vancouver, British Columbia V7H 1B1, Canada
| | - Ethan A Abbott
- Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia V8P 5C2, Canada
| | - Craig Buday
- Pacific & Yukon Laboratory for Environmental Testing, Pacific Environmental Science Centre, Environment and Climate Change Canada, North Vancouver, British Columbia V7H 1B1, Canada
| | - Dayue Shang
- Pacific & Yukon Laboratory for Environmental Testing, Pacific Environmental Science Centre, Environment and Climate Change Canada, North Vancouver, British Columbia V7H 1B1, Canada
| | - Honoria Kwok
- Pacific & Yukon Laboratory for Environmental Testing, Pacific Environmental Science Centre, Environment and Climate Change Canada, North Vancouver, British Columbia V7H 1B1, Canada
| | - Caren C Helbing
- Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia V8P 5C2, Canada.
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Bartalini A, Muñoz-Arnanz J, García-Álvarez N, Fernández A, Jiménez B. Global PBDE contamination in cetaceans. A critical review. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 308:119670. [PMID: 35752394 DOI: 10.1016/j.envpol.2022.119670] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Revised: 06/16/2022] [Accepted: 06/19/2022] [Indexed: 06/15/2023]
Abstract
This review summarizes the most relevant information on PBDEs' occurrence and their impacts in cetaceans at global scale, with special attention on the species with the highest reported levels and therefore the most potentially impacted by the current and continuous release of these substances. This review also emphasizes the anthropogenic and environmental factors that could increase concentrations and associated risks for these species in the next future. High PBDE concentrations above the toxicity threshold and stationary trends have been related to continuous import of PBDE-containing products in cetaceans of Brazil and Australia, where PBDEs have never been produced. Non-decreasing levels documented in cetaceans from the Northwest Pacific Ocean might be linked to the increased e-waste import and ongoing production and use of deca-BDE that is still allowed in China. Moreover, high levels of PBDEs in some endangered species such as beluga whales (Delphinapterus leucas) in St. Lawrence Estuary and Southern Resident killer whales (Orcinus Orca) are influenced by the discharge of contaminated waters deriving from wastewater treatment plants. Climate change related processes such as enhanced long-range transport, re-emissions from secondary sources and shifts in migration habits could lead to greater exposure and accumulation of PBDEs in cetaceans, above all in those species living in the Arctic. In addition, increased rainfall could carry greater amount of contaminants to the marine environment, thereby, enhancing the exposure and accumulation especially for coastal species. Synergic effects of all these factors and ongoing emissions of PBDEs, expected to continue at least until 2050, could increase the degree of exposure and menace for cetacean populations. In this regard, it is necessary to improve current regulations on PBDEs and broader the knowledge about their toxicological effects, in order to assess health risks and support regulatory protection for cetacean species.
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Affiliation(s)
- Alice Bartalini
- Department of Instrumental Analysis and Environmental Chemistry, Institute of Organic Chemistry (IQOG-CSIC), Juan de la Cierva 3, 28006, Madrid, Spain; Unit of Histology and Pathology, Institute of Animal Health (IUSA), Veterinary School, University of Las Palmas, 35413 Arucas, Las Palmas de Gran Canaria, Spain
| | - Juan Muñoz-Arnanz
- Department of Instrumental Analysis and Environmental Chemistry, Institute of Organic Chemistry (IQOG-CSIC), Juan de la Cierva 3, 28006, Madrid, Spain.
| | - Natalia García-Álvarez
- Unit of Histology and Pathology, Institute of Animal Health (IUSA), Veterinary School, University of Las Palmas, 35413 Arucas, Las Palmas de Gran Canaria, Spain
| | - Antonio Fernández
- Unit of Histology and Pathology, Institute of Animal Health (IUSA), Veterinary School, University of Las Palmas, 35413 Arucas, Las Palmas de Gran Canaria, Spain
| | - Begoña Jiménez
- Department of Instrumental Analysis and Environmental Chemistry, Institute of Organic Chemistry (IQOG-CSIC), Juan de la Cierva 3, 28006, Madrid, Spain
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Thorstensen MJ, Vandervelde CA, Bugg WS, Michaleski S, Vo L, Mackey TE, Lawrence MJ, Jeffries KM. Non-Lethal Sampling Supports Integrative Movement Research in Freshwater Fish. Front Genet 2022; 13:795355. [PMID: 35547248 PMCID: PMC9081360 DOI: 10.3389/fgene.2022.795355] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Accepted: 03/17/2022] [Indexed: 11/13/2022] Open
Abstract
Freshwater ecosystems and fishes are enormous resources for human uses and biodiversity worldwide. However, anthropogenic climate change and factors such as dams and environmental contaminants threaten these freshwater systems. One way that researchers can address conservation issues in freshwater fishes is via integrative non-lethal movement research. We review different methods for studying movement, such as with acoustic telemetry. Methods for connecting movement and physiology are then reviewed, by using non-lethal tissue biopsies to assay environmental contaminants, isotope composition, protein metabolism, and gene expression. Methods for connecting movement and genetics are reviewed as well, such as by using population genetics or quantitative genetics and genome-wide association studies. We present further considerations for collecting molecular data, the ethical foundations of non-lethal sampling, integrative approaches to research, and management decisions. Ultimately, we argue that non-lethal sampling is effective for conducting integrative, movement-oriented research in freshwater fishes. This research has the potential for addressing critical issues in freshwater systems in the future.
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Affiliation(s)
- Matt J. Thorstensen
- Department of Biological Sciences, University of Manitoba, Winnipeg, MB, Canada
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Zahaby Y, Xia P, Crump D, Provencher JF, Thomas PJ, Pauli B, Braune BM, Franckowiak RP, Gendron M, Savard G, Sarma SN, Mallory ML, O'Brien J. ToxChip PCR Arrays for Two Arctic-Breeding Seabirds: Applications for Regional Environmental Assessments. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:7521-7530. [PMID: 33983718 DOI: 10.1021/acs.est.1c00229] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Increasing pollution in the Arctic poses challenges in terms of geographical and ecological monitoring. The Baffin Bay-Davis Strait (BBDS) region in the Canadian Arctic Archipelago is of particular concern due to the potential for increased shipping traffic and oil exploration. However, data on background contaminants associated with oil exploration/spills/natural seeps (e.g., polycyclic aromatic compounds [PAC]) and measures of potential effects for Arctic birds are limited. We developed a toxicogenomics approach to investigate the background gene expression profiles for two Arctic-breeding seabirds, the thick-billed murre (Uria lomvia) and the black guillemot (Cepphus grylle), which will aid effects-based monitoring efforts. Chemical burdens (53 PACs and 5 trace elements) and transcriptomic profiles (31 genes using a ToxChip PCR array) were examined in liver tissues (n = 30) of each species collected from the Qaqulluit and Akpait National Wildlife Areas in the BBDS region. While chemical and transcriptomic profiles demonstrated low variability across individuals for each species, gene expression signatures were able to distinguish guillemots collected from two distinct colonies. This toxicogenomics approach provides benchmark data for two Arctic seabirds and is promising for future monitoring efforts and strategic environmental assessments in this sensitive ecosystem and areas elsewhere in the circumpolar Arctic that are undergoing change.
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Affiliation(s)
- Yasmeen Zahaby
- Science and Technology Branch, Environment and Climate Change Canada, Ottawa, ON K1A 0H3, Canada
| | - Pu Xia
- Science and Technology Branch, Environment and Climate Change Canada, Ottawa, ON K1A 0H3, Canada
| | - Doug Crump
- Science and Technology Branch, Environment and Climate Change Canada, Ottawa, ON K1A 0H3, Canada
| | - Jennifer F Provencher
- Science and Technology Branch, Environment and Climate Change Canada, Ottawa, ON K1A 0H3, Canada
| | - Philippe J Thomas
- Science and Technology Branch, Environment and Climate Change Canada, Ottawa, ON K1A 0H3, Canada
| | - Bruce Pauli
- Science and Technology Branch, Environment and Climate Change Canada, Ottawa, ON K1A 0H3, Canada
| | - Birgit M Braune
- Science and Technology Branch, Environment and Climate Change Canada, Ottawa, ON K1A 0H3, Canada
| | | | - Michel Gendron
- Canadian Wildlife Service, Environment and Climate Change Canada, Ottawa, ON K1A 0H3, Canada
| | - Guy Savard
- Science and Technology Branch, Environment and Climate Change Canada, Ottawa, ON K1A 0H3, Canada
| | - Sailendra Nath Sarma
- Science and Technology Branch, Environment and Climate Change Canada, Ottawa, ON K1A 0H3, Canada
| | - Mark L Mallory
- Department of Biology, Acadia University, Wolfville, NS B4P 2R6, Canada
| | - Jason O'Brien
- National Wildlife Research Centre, Environment and Climate Change Canada, 1125 Colonel By Dr., Ottawa, ON ON K1S, Canada
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8
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Jeffries KM, Teffer A, Michaleski S, Bernier NJ, Heath DD, Miller KM. The use of non-lethal sampling for transcriptomics to assess the physiological status of wild fishes. Comp Biochem Physiol B Biochem Mol Biol 2021; 256:110629. [PMID: 34058376 DOI: 10.1016/j.cbpb.2021.110629] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Revised: 05/19/2021] [Accepted: 05/25/2021] [Indexed: 12/14/2022]
Abstract
Fishes respond to different abiotic and biotic stressors through changes in gene expression as a part of an integrated physiological response. Transcriptomics approaches have been used to quantify gene expression patterns as a reductionist approach to understand responses to environmental stressors in animal physiology and have become more commonly used to study wild fishes. We argue that non-lethal sampling for transcriptomics should become the norm for assessing the physiological status of wild fishes, especially when there are conservation implications. Processes at the level of the transcriptome provide a "snapshot" of the cellular conditions at a given time; however, by using a non-lethal sampling protocol, researchers can connect the transcriptome profile with fitness-relevant ecological endpoints such as reproduction, movement patterns and survival. Furthermore, telemetry is a widely used approach in fisheries to understand movement patterns in the wild, and when combined with transcriptional profiling, provides arguably the most powerful use of non-lethal sampling for transcriptomics in wild fishes. In this review, we discuss the different tissues that can be successfully incorporated into non-lethal sampling strategies, which is particularly useful in the context of the emerging field of conservation transcriptomics. We briefly describe different methods for transcriptional profiling in fishes from high-throughput qPCR to whole transcriptome approaches. Further, we discuss strategies and the limitations of using transcriptomics for non-lethally studying fishes. Lastly, as 'omics' technology continues to advance, transcriptomics paired with different omics approaches to study wild fishes will provide insight into the factors that regulate phenotypic variation and the physiological responses to changing environmental conditions in the future.
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Affiliation(s)
- Ken M Jeffries
- Department of Biological Sciences, University of Manitoba, 50 Sifton Road, Winnipeg, Manitoba R3T 2N2, Canada.
| | - Amy Teffer
- Department of Environmental Conservation, University of Massachusetts Amherst, Amherst, MA 01003, United States of America
| | - Sonya Michaleski
- Department of Biological Sciences, University of Manitoba, 50 Sifton Road, Winnipeg, Manitoba R3T 2N2, Canada
| | - Nicholas J Bernier
- Department of Integrative Biology, University of Guelph, Guelph, ON N1G 2W1, Canada
| | - Daniel D Heath
- Department of Integrative Biology, Great Lakes Institute for Environmental Research, University of Windsor, Windsor, ON N9B 3P4, Canada
| | - Kristina M Miller
- Pacific Biological Station, Fisheries and Oceans Canada, 3190 Hammond Bay Rd, Nanaimo, BC V9T 6N7, Canada
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Montory M, Habit E, Fernandez P, Grimalt JO, Kolok AS, Barra RO, Ferrer J. Biotransport of persistent organic pollutants in the southern Hemisphere by invasive Chinook salmon (Oncorhynchus tshawytscha) in the rivers of northern Chilean Patagonia, a UNESCO biosphere reserve. ENVIRONMENT INTERNATIONAL 2020; 142:105803. [PMID: 32563009 DOI: 10.1016/j.envint.2020.105803] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2019] [Revised: 05/10/2020] [Accepted: 05/11/2020] [Indexed: 06/11/2023]
Abstract
Biotransport is often associated with migration patterns of species, including large, anadromous salmonids. Several studies have reported biotransport of persistent organic pollutants in the Northern Hemisphere, but there is no published information on biotransport ocurring south of the equator. Chile's Patagonia is one of the last largely intact natural areas in the world. The objective of this study was to determine whether persistent organic pollutants are transported by the invasive Pacific Chinook salmon (O. tshawytscha) from the Pacific Ocean to Chilean Patagonia. Samples of juvenile and adult Chinook salmon were analyzed for polychlorinated biphenyls, pesticides and polybrominated diphenyl ethers. The results revealed that concentrations of POPs in adults migrating into Patagonian rivers were significantly higher than those found in juveniles migrating seaward. A mass balance analysis indicates that Chinook salmon are a source of persistent organic pollutants to Chilean Patagonia inland waters. Capsule: Biotransport of Persistent Organic Pollutants (POPs) by Chinook salmon (O. tshawytscha) from the Pacific Ocean to Chilean Patagonia has been confirmed by mass balance of POPs.
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Affiliation(s)
- Mónica Montory
- Hydro-environmental Biotechnology Laboratory, Department of Water Resources, Faculty of Agricultural Engineering, University of Concepción, Chile.
| | - Evelyn Habit
- Faculty of Environmental Sciences/EULA-Chile Centre, Department of Aquatic Systems, University of Concepción, Barrio Universitario S/N, PO Box 160-C Concepción, Chile
| | - Pilar Fernandez
- Institute of Environmental Assessment and Water Research (IDAEA), Barcelona, Spain
| | - Joan O Grimalt
- Institute of Environmental Assessment and Water Research (IDAEA), Barcelona, Spain
| | - Alan S Kolok
- Idaho Water Research Resources Institute, University of Idaho, Moscow, ID, USA
| | - Ricardo O Barra
- Faculty of Environmental Sciences/EULA-Chile Centre, Department of Aquatic Systems, University of Concepción, Barrio Universitario S/N, PO Box 160-C Concepción, Chile
| | - Javier Ferrer
- Hydro-environmental Biotechnology Laboratory, Department of Water Resources, Faculty of Agricultural Engineering, University of Concepción, Chile.
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Banet AI, Healy SJ, Eliason EJ, Roualdes EA, Patterson DA, Hinch SG. Simulated maternal stress reduces offspring aerobic swimming performance in Pacific salmon. CONSERVATION PHYSIOLOGY 2019; 7:coz095. [PMID: 31867107 PMCID: PMC6919300 DOI: 10.1093/conphys/coz095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Revised: 10/04/2019] [Accepted: 11/21/2019] [Indexed: 06/10/2023]
Abstract
Pacific salmon routinely encounter stressors during their upriver spawning migration, which have the potential to influence offspring through hormonally-mediated maternal effects. To disentangle genetic vs. hormonal effects on offspring swimming performance, we collected gametes from three species of Pacific salmon (Chinook, pink and sockeye) at the end of migration and exposed a subset of eggs from each female to cortisol baths to simulate high levels of maternal stress. Fertilised eggs were reared to fry and put through a series of aerobic swim trials. Results show that exposure to cortisol early in development reduces maximum oxygen consumption while swimming, and decreases aerobic scope in all three species. Resting oxygen consumption did not differ between cortisol and control treatment groups. We also examined several metrics that could influence aerobic performance, and found no differences between treatment groups in haematocrit%, haemoglobin concentration, heart mass, citrate synthase activity or lactate dehydrogenase activity. Though it was not the focus of this study, an interesting discovery was that pink salmon had a higher MO2max and aerobic scope relative to the other species, which was supported by a greater haematocrit, haemoglobin, a larger heart and higher CS activity. Some management and conservation practices for Pacific salmon focus efforts primarily on facilitating adult spawning. However, if deleterious effects of maternal stress acquired prior to spawning persist into the next generation, consideration will need to be given to sub-lethal effects that could be imparted onto offspring from maternal stress.
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Affiliation(s)
- Amanda I Banet
- Department of Biological Sciences, California State University, Chico, 400 W. First Street, Chico, CA 95929, USA
- Pacific Salmon Ecology and Conservation Laboratory, Department of Forest and Conservation Sciences, University of British Columbia, 2424 Main Mall, Vancouver, BC, V6T 1Z4, Canada
| | - Stephen J Healy
- Pacific Salmon Ecology and Conservation Laboratory, Department of Forest and Conservation Sciences, University of British Columbia, 2424 Main Mall, Vancouver, BC, V6T 1Z4, Canada
| | - Erika J Eliason
- Pacific Salmon Ecology and Conservation Laboratory, Department of Forest and Conservation Sciences, University of British Columbia, 2424 Main Mall, Vancouver, BC, V6T 1Z4, Canada
- Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, Santa Barbara, CA 93106, USA
| | - Edward A Roualdes
- Department of Mathematics and Statistics, California State University, Chico, 400 W. First Street, Chico, CA 95929, USA
| | - David A Patterson
- Fisheries and Oceans Canada, Science Branch, Pacific Region, Co-operative Resource Management Institute, School of Resource Environmental Management, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada
| | - Scott G Hinch
- Pacific Salmon Ecology and Conservation Laboratory, Department of Forest and Conservation Sciences, University of British Columbia, 2424 Main Mall, Vancouver, BC, V6T 1Z4, Canada
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11
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Imbery JJ, Buday C, Miliano RC, Shang D, Round JM, Kwok H, Van Aggelen G, Helbing CC. Evaluation of Gene Bioindicators in the Liver and Caudal Fin of Juvenile Pacific Coho Salmon in Response to Low Sulfur Marine Diesel Seawater-Accommodated Fraction Exposure. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019; 53:1627-1638. [PMID: 30614687 DOI: 10.1021/acs.est.8b05429] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Low sulfur marine diesel (LSMD) is frequently involved in coastal spills and monitoring ecosystem damage, and the effectiveness of cleanup methods remains a challenge. The present study investigates the concentration and composition of polycyclic aromatic hydrocarbons (PAHs) dispersed in LSMD seawater accommodated fractions (WAFs) and assesses the effects of exposure on juvenile coho salmon ( Onchorhynchus kisutch). Three WAFs were prepared with 333, 1067, and 3333 mg/L LSMD. The sum of 50 common PAHs and alkylated PAHs (tPAH50) measured by gas chromatography/triple quadrupole mass spectrometry showed saturation at ∼90 mg/L for all WAFs. These WAFs were diluted 30% for 96 h fish exposures. qPCR was performed on liver and caudal fin from the same genotypically sexed individuals to evaluate PAH exposure, general and oxidative stress, estrogenic activity, and defense against metals. Excluding metal response, our analyses reveal significant changes in gene expression following WAF exposure on juvenile salmon with differential sensitivity between males and females. The 3-methylcholanthrene responsive cytochrome P450-1a ( cyp1a) transcript exhibited the greatest increase in transcript abundance in the caudal fin (10-18-fold) and liver (6-10-fold). This demonstrates that cyp1a is a robust, sex-independent bioindicator of oil exposure in caudal fin, a tissue that is amenable to nonlethal sampling.
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Affiliation(s)
- Jacob J Imbery
- Department of Biochemistry and Microbiology , University of Victoria , Victoria , British Columbia V8P 5C2 , Canada
| | - Craig Buday
- Pacific & Yukon Laboratory for Environmental Testing, Pacific Environmental Science Centre , Environment and Climate Change Canada , North Vancouver , British Columbia V7H 1B1 , Canada
| | - Rachel C Miliano
- Pacific & Yukon Laboratory for Environmental Testing, Pacific Environmental Science Centre , Environment and Climate Change Canada , North Vancouver , British Columbia V7H 1B1 , Canada
| | - Dayue Shang
- Pacific & Yukon Laboratory for Environmental Testing, Pacific Environmental Science Centre , Environment and Climate Change Canada , North Vancouver , British Columbia V7H 1B1 , Canada
| | - Jessica M Round
- Department of Biochemistry and Microbiology , University of Victoria , Victoria , British Columbia V8P 5C2 , Canada
| | - Honoria Kwok
- Pacific & Yukon Laboratory for Environmental Testing, Pacific Environmental Science Centre , Environment and Climate Change Canada , North Vancouver , British Columbia V7H 1B1 , Canada
| | - Graham Van Aggelen
- Pacific & Yukon Laboratory for Environmental Testing, Pacific Environmental Science Centre , Environment and Climate Change Canada , North Vancouver , British Columbia V7H 1B1 , Canada
| | - Caren C Helbing
- Department of Biochemistry and Microbiology , University of Victoria , Victoria , British Columbia V8P 5C2 , Canada
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12
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Hook SE, Kroon FJ, Greenfield PA, Warne MSJ, Smith RA, Turner RD. Hepatic transcriptomic profiles from barramundi, Lates calcarifer, as a means of assessing organism health and identifying stressors in rivers in northern Queensland. MARINE ENVIRONMENTAL RESEARCH 2017; 129:166-179. [PMID: 28601346 DOI: 10.1016/j.marenvres.2017.05.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2016] [Revised: 05/12/2017] [Accepted: 05/29/2017] [Indexed: 06/07/2023]
Abstract
Resource managers need to differentiate between sites with and without contaminants and those where contaminants cause impacts. Potentially, transcriptomes could be used to evaluate sites where contaminant-induced effects may occur, to identify causative stressors of effects and potential adverse outcomes. To test this hypothesis, the hepatic transcriptomes in Barramundi, a perciforme teleost fish, (Lates calcarifer) from two reference sites, two agriculturally impacted sites sampled during the dry season, and an impacted site sampled during the wet season were compared. The hepatic transcriptome was profiled using RNA-Seq. Multivariate analysis showed that transcriptomes were clustered based on site and by inference water quality, but not sampling time. The largest differences in transcriptomic profile were between reference sites and a site sampled during high run-off, showing that impacted sites can be identified via RNA-Seq. Transcripts with altered abundance were linked to xenobiotic metabolism, peroxisome proliferation and stress responses, indicating putative stressors with the potential for adverse outcomes in barramundi.
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Affiliation(s)
- Sharon E Hook
- Commonwealth Scientific and Industrial Research Organisation (CSIRO) Oceans and Atmosphere, Kirrawee, NSW 2232, Australia.
| | - Frederieke J Kroon
- Australian Institute of Marine Science, PMB 3, Townsville, Queensland 4810, Australia
| | - Paul A Greenfield
- CSIRO Oceans and Atmosphere North Ryde, New South Wales 2113, Australia
| | - Michael St J Warne
- Centre for Agroecology, Water and Resilience, Coventry University, United Kingdom; Queensland Department of Science, Information Technology, and Innovation, Brisbane, Queensland 4001, Australia; Australian Rivers Institute, Griffith University, Queensland 4111, Australia; National Research Centre for Environmental Toxicology (EnTox), University of Queensland, Queensland 4108, Australia
| | - Rachael A Smith
- Queensland Department of Science, Information Technology, and Innovation, Brisbane, Queensland 4001, Australia; Australian Rivers Institute, Griffith University, Queensland 4111, Australia
| | - Ryan D Turner
- Queensland Department of Science, Information Technology, and Innovation, Brisbane, Queensland 4001, Australia; Australian Rivers Institute, Griffith University, Queensland 4111, Australia
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13
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Noël M, Dangerfield N, Jeffries S, Lambourn D, Lance M, Helbing C, Lebeuf M, Ross PS. Polychlorinated Biphenyl-Related Alterations of the Expression of Essential Genes in Harbour Seals (Phoca vitulina) from Coastal Sites in Canada and the United States. ARCHIVES OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2017; 73:310-321. [PMID: 28528409 DOI: 10.1007/s00244-016-0362-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2016] [Accepted: 11/16/2016] [Indexed: 06/07/2023]
Abstract
As long-lived marine mammals found throughout the temperate coastal waters of the North Pacific and Atlantic Oceans, harbour seals (Phoca vitulina) have become an invaluable sentinel of food-web contamination. Their relatively high trophic position predisposes harbour seals to the accumulation of harmful levels of persistent organic pollutants (POPs). We obtained skin/blubber biopsy samples from live-captured young harbour seals from various sites in the northeastern Pacific (British Columbia, Canada, and Washington State, USA) as well as the northwestern Atlantic (Newfoundland and Quebec, Canada). We developed harbour seal-specific primers to investigate the potential impact of POP exposure on the expression of eight important genes. We found correlations between the blubber mRNA levels of three of our eight target genes and the dominant persistent organic pollutant in seals [polychlorinated biphenyls (PCBs)] including estrogen receptor alpha (Esr1: r 2 = 0.12, p = 0.038), thyroid hormone receptor alpha (Thra: r 2 = 0.16; p = 0.028), and glucocorticoid receptor (Nr3c1: r 2 = 0.12; p = 0.049). Age, sex, weight, and length were not confounding factors on the expression of genes. Although the population-level consequences are unclear, our results suggest that PCBs are associated with alterations of the expression of genes responsible for aspects of metabolism, growth and development, and immune function. Collectively, these results provide additional support for the use of harbour seals as indicators of coastal food-web contamination.
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Affiliation(s)
- Marie Noël
- Ocean Pollution Research Program, Coastal Ocean Research Institute, Vancouver Aquarium Marine Science Centre, PO Box 3232, Vancouver, BC, V6B 3X8, Canada.
| | - Neil Dangerfield
- Institute of Ocean Sciences, Fisheries and Oceans, PO Box 6000, Sidney, BC, V8L 4B2, Canada
| | - Steve Jeffries
- Washington Department of Fish and Wildlife, Lakewood, WA, 98498, USA
| | - Dyanna Lambourn
- Washington Department of Fish and Wildlife, Lakewood, WA, 98498, USA
| | - Monique Lance
- Washington Department of Fish and Wildlife, Lakewood, WA, 98498, USA
| | - Caren Helbing
- Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC, V8W 3P6, Canada
| | - Michel Lebeuf
- Institut Maurice-Lamontagne, Fisheries and Oceans Canada, Mont-Joli, QC, G5H 3Z4, Canada
| | - Peter S Ross
- Ocean Pollution Research Program, Coastal Ocean Research Institute, Vancouver Aquarium Marine Science Centre, PO Box 3232, Vancouver, BC, V6B 3X8, Canada
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14
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Alderman SL, Lin F, Farrell AP, Kennedy CJ, Gillis TE. Effects of diluted bitumen exposure on juvenile sockeye salmon: From cells to performance. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2017; 36:354-360. [PMID: 27328800 DOI: 10.1002/etc.3533] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2016] [Revised: 05/28/2016] [Accepted: 06/20/2016] [Indexed: 05/25/2023]
Abstract
Diluted bitumen (dilbit; the product of oil sands extraction) is transported through freshwater ecosystems critical to Pacific salmon. This is concerning, because crude oil disrupts cardiac development, morphology, and function in embryonic fish, and cardiac impairment in salmon can have major consequences on migratory success and fitness. The sensitivity of early life-stage salmon to dilbit and its specific cardiotoxic effects are unknown. Sockeye salmon parr were exposed to environmentally relevant concentrations of the water-soluble fraction (WSF) of dilbit for 1 wk and 4 wk, followed by an examination of molecular, morphological, and organismal endpoints related to cardiotoxicity. We show that parr are sensitive to WSF of dilbit, with total polycyclic aromatic hydrocarbon (PAH) concentrations of 3.5 µg/L sufficient to induce a liver biomarker of PAH exposure, and total PAH of 16.4 µg/L and 66.7 µg/L inducing PAH biomarkers in the heart. Furthermore, WSF of dilbit induces concentration-dependent cardiac remodeling coincident with performance effects: fish exposed to 66.7 µg/L total PAH have relatively fewer myocytes and more collagen in the compact myocardium and impaired swimming performance at 4 wk, whereas the opposite changes occur in fish exposed to 3.5 µg/L total PAH. The results demonstrate cardiac sensitivity to dilbit exposure that could directly impact sockeye migratory success. Environ Toxicol Chem 2017;36:354-360. © 2016 SETAC.
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Affiliation(s)
- Sarah L Alderman
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
| | - Feng Lin
- Department of Biological Sciences, Simon Fraser University, Burnaby, British Columbia, Canada
| | - Anthony P Farrell
- Department of Zoology and Faculty of Land and Food Systems, University of British Columbia, Vancouver, British Columbia, Canada
| | - Christopher J Kennedy
- Department of Biological Sciences, Simon Fraser University, Burnaby, British Columbia, Canada
| | - Todd E Gillis
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada
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15
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Alderman SL, Harter TS, Wilson JM, Supuran CT, Farrell AP, Brauner CJ. Evidence for a plasma-accessible carbonic anhydrase in the lumen of salmon heart that may enhance oxygen delivery to the myocardium. J Exp Biol 2016; 219:719-24. [DOI: 10.1242/jeb.130443] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
ABSTRACT
Oxygen supply to the heart of most teleosts, including salmonids, relies in part or in whole on oxygen-depleted venous blood. Given that plasma-accessible carbonic anhydrase (CA) in red muscle of rainbow trout has recently been shown to facilitate oxygen unloading from arterial blood under certain physiological conditions, we tested the hypothesis that plasma-accessible CA is present in the lumen of coho salmon (Oncorhynchus kisutch) hearts, and may therefore assist in the luminal oxygen supply to the spongy myocardium, which has no coronary circulation. We demonstrate a widespread distribution of CA throughout the heart chambers, including lumen-facing cells in the atrium, and confirm that the membrane-bound isoform ca4 is expressed in the atrium and ventricle of the heart. Further, we confirm that CA catalytic activity is available to blood in the atrial lumen using a modified electrometric ΔpH assay in intact atria in combination with either a membrane-impermeable CA inhibitor or specific cleavage of the Ca4 membrane anchor. Combined, these results support our hypothesis of the presence of an enhanced oxygen delivery system in the lumen of a salmonid heart, which could help support oxygen delivery when the oxygen content of venous blood becomes greatly reduced, such as after burst exercise and during environmental hypoxia.
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Affiliation(s)
- Sarah L. Alderman
- Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada N1G 2W1
| | - Till S. Harter
- Department of Zoology, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4
| | - Jonathan M. Wilson
- Department of Biology, Wilfrid Laurier University, Waterloo, Ontario, Canada N2L 3C5
| | - Claudiu T. Supuran
- Neurofarba Department, Università degli Studi di Firenze, 50019 Florence, Italy
| | - Anthony P. Farrell
- Department of Zoology, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4
- Faculty of Land and Food Systems, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4
| | - Colin J. Brauner
- Department of Zoology, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4
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16
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Benskin JP, Ikonomou MG, Liu J, Veldhoen N, Dubetz C, Helbing CC, Cosgrove JR. Distinctive metabolite profiles in in-migrating Sockeye salmon suggest sex-linked endocrine perturbation. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014; 48:11670-11678. [PMID: 25198612 DOI: 10.1021/es503266x] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The health of Skeena River Sockeye salmon (Onchorhychus nerka) has been of increasing concern due to declining stock returns over the past decade. In the present work, in-migrating Sockeye from the 2008 run were evaluated using a mass spectrometry-based, targeted metabolomics platform. Our objectives were to (a) investigate natural changes in a subset of the hepatic metabolome arising from migration-associated changes in osmoregulation, locomotion, and gametogenesis, and (b) compare the resultant profiles with animals displaying altered hepatic vitellogenin A (vtg) expression at the spawning grounds, which was previously hypothesized as a marker of xenobiotic exposure. Of 203 metabolites monitored, 95 were consistently observed in Sockeye salmon livers and over half of these changed significantly during in-migration. Among the most dramatic changes in both sexes were a decrease in concentrations of taurine (a major organic osmolyte), carnitine (involved in fatty acid transport), and two major polyunsaturated fatty acids (eicosapentaenoic acid and docosahexaenoic acid). In females, an increase in amino acids was attributed to protein catabolism associated with vitellogenesis. Animals with atypical vtg mRNA expression demonstrated unusual hepatic amino acid, fatty acid, taurine, and carnitine profiles. The cause of these molecular perturbations remains unclear, but may include xenobiotic exposure, natural senescence, and/or interindividual variability. These data provide a benchmark for further investigation into the long-term health of migrating Skeena Sockeye.
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Affiliation(s)
- Jonathan P Benskin
- AXYS Analytical Services Ltd. 2045 Mills Road West, Sidney, British Columbia V8L 5X2, Canada
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17
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Veldhoen N, Beckerton JE, Mackenzie-Grieve J, Stevenson MR, Truelson RL, Helbing CC. Development of a non-lethal method for evaluating transcriptomic endpoints in Arctic grayling (Thymallus arcticus). ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2014; 105:43-50. [PMID: 24780232 DOI: 10.1016/j.ecoenv.2014.03.030] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2013] [Revised: 01/15/2014] [Accepted: 03/25/2014] [Indexed: 06/03/2023]
Abstract
With increases in active mining and continued discharge associated with former mine operations, evaluating the health of watersheds in the Canadian Yukon Territory is warranted. Current environmental assessment approaches often employ guidelines established using sentinel species not relevant to Arctic monitoring programs. The present study focused on the successful development of a quantitative real-time polymerase chain reaction (qPCR) assay directed towards the indigenous Arctic grayling (Thymallus arcticus) and examines the feasibility of using non-lethal sampling from the caudal fin as a means for evaluation of mRNA abundance profiles reflective of environmental conditions. In a proof of concept study performed blind, qPCR results from animals in an area with elevated water concentrations of cadmium (Cd) and zinc (Zn) and higher body burdens of Cd, Zn, and lead (Pb) were compared to a reference location in the Yukon Territory. Lower condition factor and a higher abundance of hepatic and caudal fin gene transcripts encoding the metallothionein isoforms (mta/mtb), in addition to elevated heat shock protein 70 (hsp70) and catalase (cat) mRNAs in liver, were observed in fish from the test site. The strong positive correlation between metal body burden and caudal fin mta/mtb mRNA abundance demonstrates a high potential for use of the Arctic grayling assay in non-lethal environmental monitoring programs.
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Affiliation(s)
- Nik Veldhoen
- Department of Biochemistry and Microbiology, University of Victoria, P.O. Box 3055, STN CSC, Victoria, BC, Canada V8W 3P6.
| | - Jean E Beckerton
- Water Resources Branch, Environment Yukon, Government of Yukon, Box 2703 (V-310), Whitehorse, Yukon, Canada Y1A 2C6.
| | | | - Mitchel R Stevenson
- Department of Biochemistry and Microbiology, University of Victoria, P.O. Box 3055, STN CSC, Victoria, BC, Canada V8W 3P6.
| | - Robert L Truelson
- Water Resources Branch, Environment Yukon, Government of Yukon, Box 2703 (V-310), Whitehorse, Yukon, Canada Y1A 2C6.
| | - Caren C Helbing
- Department of Biochemistry and Microbiology, University of Victoria, P.O. Box 3055, STN CSC, Victoria, BC, Canada V8W 3P6.
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18
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Lukyanova ON, Tsygankov VY, Boyarova MD, Khristoforova NK. Pesticide biotransport by Pacific salmon in the northwestern Pacific Ocean. DOKLADY BIOLOGICAL SCIENCES : PROCEEDINGS OF THE ACADEMY OF SCIENCES OF THE USSR, BIOLOGICAL SCIENCES SECTIONS 2014; 456:188-190. [PMID: 24985512 DOI: 10.1134/s0012496614030089] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2014] [Indexed: 06/03/2023]
Affiliation(s)
- O N Lukyanova
- Pacific Fisheries Research Center (TINRO-Center), Vladivostok, 690950, Russia,
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19
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Veldhoen N, Stevenson MR, Skirrow RC, Rieberger KJ, van Aggelen G, Meays CL, Helbing CC. Minimally invasive transcriptome profiling in salmon: detection of biological response in rainbow trout caudal fin following exposure to environmental chemical contaminants. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2013; 142-143:239-247. [PMID: 24055988 DOI: 10.1016/j.aquatox.2013.08.016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2013] [Revised: 08/23/2013] [Accepted: 08/27/2013] [Indexed: 06/02/2023]
Abstract
An increasing number of anthropogenic chemicals have demonstrated potential for disruption of biological processes critical to normal growth and development of wildlife species. Both anadromous and freshwater salmon species are at risk of exposure to environmental chemical contaminants that may affect migratory behavior, environmental fitness, and reproductive success. A sensitive metric in determination of the presence and impact of such environmental chemical contaminants is through detection of changes in the status of gene transcript levels using a targeted quantitative real-time polymerase chain reaction assay. Ideally, the wildlife assessment strategy would incorporate conservation-centered non-lethal practices. Herein, we describe the development of such an assay for rainbow trout, Oncorhynchus mykiss, following an acute 96 h exposure to increasing concentrations of either 17α-ethinyl estradiol or cadmium. The estrogenic screen included measurement of mRNA encoding estrogen receptor α and β isoforms, vitellogenin, vitelline envelope protein γ, cytochrome p450 family 19 subfamily A, aryl hydrocarbon receptor, and the stress indicator, catalase. The metal exposure screen included evaluation of the latter two mRNA transcripts along with those encoding the metallothionein A and B isoforms. Exposure-dependent transcript abundance profiles were detected in both liver and caudal fin supporting the use of the caudal fin as a non-lethally obtained tissue source. The potential for both transcriptome profiling and genotypic sex determination from fin biopsy was extended, in principle, to field-captured Chinook salmon (Oncorhynchus tshawytscha).
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Affiliation(s)
- Nik Veldhoen
- Department of Biochemistry and Microbiology, University of Victoria, P.O. Box 3055, STN CSC, Victoria, BC V8W 3P6, Canada
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20
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Veldhoen N, Ikonomou MG, Rehaume V, Dubetz C, Patterson DA, Helbing CC. Evidence of disruption in estrogen-associated signaling in the liver transcriptome of in-migrating sockeye salmon of British Columbia, Canada. Comp Biochem Physiol C Toxicol Pharmacol 2013; 157:150-61. [PMID: 23103762 DOI: 10.1016/j.cbpc.2012.10.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/01/2012] [Revised: 10/18/2012] [Accepted: 10/20/2012] [Indexed: 11/26/2022]
Abstract
The health of sockeye (Oncorhynchus nerka) salmon stocks is of increasing concern; reflecting both a sentinel of human-impacted aquatic environments and as a key fishery for British Columbia, Canada. The spawning migration of Pacific sockeye salmon represents a critical life stage where significant demands are made on animal biology and important BC fisheries are linked to this migration in the Skeena and Fraser River watersheds. These watersheds present very different environments; the former being sparsely populated with little industrial impact, while the latter flows through highly-populated areas. The present study used quantitative real-time PCR analysis of adult sockeye salmon from four 2008 stocks [Fulton River and Pinkut Creek (Skeena) and Weaver Creek and Harrison River (Fraser)] to evaluate ten hepatic gene transcripts associated with reproduction, stress, energy metabolism, and exposure to environmental contaminants. Dynamic changes in mRNA abundance were observed in Fulton River stock animals from the Skeena River mouth to the spawning ground which reflect the physiological demands of in-river migration and reproductive maturation. Inter-stock comparisons of migrants at spawning grounds demonstrated a marked difference in the sex-specific gene hepatic gene expression profiles. Our original hypothesis was that a greater diversity in mRNA profiles is associated with watersheds with higher human impact. However, our observations contradict this posit. Skeena males and females displayed poor definition in their molecular profiles between sexes while the Fraser River fish had very distinctive sex differences that were consistent with the previous year's migration. The genetic sex distribution and ratio of milt versus roe production did not differ between the Skeena and Fraser River spawning site fish. However, a significant percentage of Skeena animals displayed marked discordance of these characteristics with gender-specific hepatic mRNA profiles implying that an alteration in estrogen-mediated signaling has occurred. Continued geospatial and longitudinal assessments will help determine to what extent the dynamic molecular biology of late life-stage sockeye salmon reflects natural variation or modulation by anthropogenic causative agents.
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Affiliation(s)
- Nik Veldhoen
- Department of Biochemistry & Microbiology, University of Victoria, P.O. Box 3055 Stn CSC, Victoria, B.C., Canada V8W 3P6
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Veldhoen N, Ikonomou MG, Buday C, Jordan J, Rehaume V, Cabecinha M, Dubetz C, Chamberlain J, Pittroff S, Vallée K, van Aggelen G, Helbing CC. Biological effects of the anti-parasitic chemotherapeutant emamectin benzoate on a non-target crustacean, the spot prawn (Pandalus platyceros Brandt, 1851) under laboratory conditions. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2012; 108:94-105. [PMID: 22088864 DOI: 10.1016/j.aquatox.2011.10.015] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2011] [Revised: 10/10/2011] [Accepted: 10/21/2011] [Indexed: 05/31/2023]
Abstract
The potential impact of commercial salmon aquaculture along the coast of British Columbia on the health of non-target marine wildlife is of growing concern. In the current initiative, the biological effects on gene expression within spot prawn (Pandalus platyceros) exposed to the sea lice controlling agent, emamectin benzoate (EB; 0.1-4.8 mg/kg sediment), were investigated. A mean sediment/water partitioning coefficient (K(p)) was determined to be 21.81 and significant levels of EB were detected in the tail muscle tissue in all exposed animals. Animals selected for the experiment did not have eggs and were of similar weight. Significant mortality was observed within 8 days of EB treatment at concentrations between 0.1 and 0.8 mg/kg and there was no effect of EB on molting. Twelve spot prawn cDNA sequences were isolated from the tail muscle either by directed cloning or subtractive hybridization of control versus EB exposed tissues. Three of the transcripts most affected by EB exposure matched sequences encoding the 60S ribosomal protein L22, spliceosome RNA helicase WM6/UAP56, and the intracellular signal mediator histidine triad nucleotide binding protein 1 suggesting that translation, transcription regulation, and apoptosis pathways were impacted. The mRNA encoding the molting enzyme, β-N-acetylglucosaminidase, was not affected by EB treatment. However, the expression of this transcript was extremely variable making it unsuitable for effects assessment. The results suggest that short-term exposure to EB can impact biological processes within this non-target crustacean.
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Affiliation(s)
- Nik Veldhoen
- Department of Biochemistry & Microbiology, University of Victoria, P.O. Box 3055, Stn CSC, Victoria, BC, Canada
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Veldhoen N, Ikonomou MG, Helbing CC. Molecular profiling of marine fauna: integration of omics with environmental assessment of the world's oceans. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2012; 76:23-38. [PMID: 22036265 DOI: 10.1016/j.ecoenv.2011.10.005] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2011] [Revised: 09/16/2011] [Accepted: 10/06/2011] [Indexed: 05/31/2023]
Abstract
Many species that contribute to the commercial and ecological richness of our marine ecosystems are harbingers of environmental change. The ability of organisms to rapidly detect and respond to changes in the surrounding environment represents the foundation for application of molecular profiling technologies towards marine sentinel species in an attempt to identify signature profiles that may reside within the transcriptome, proteome, or metabolome and that are indicative of a particular environmental exposure event. The current review highlights recent examples of the biological information obtained for marine sentinel teleosts, mammals, and invertebrates. While in its infancy, such basal information can provide a systems biology framework in the detection and evaluation of environmental chemical contaminant effects on marine fauna. Repeated evaluation across different seasons and local marine environs will lead to discrimination between signature profiles representing normal variation within the complex milieu of environmental factors that trigger biological response in a given sentinel species and permit a greater understanding of normal versus anthropogenic-associated modulation of biological pathways, which prove detrimental to marine fauna. It is anticipated that incorporation of contaminant-specific molecular signatures into current risk assessment paradigms will lead to enhanced wildlife management strategies that minimize the impacts of our industrialized society on marine ecosystems.
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Affiliation(s)
- Nik Veldhoen
- Department of Biochemistry and Microbiology, University of Victoria, P.O. Box 3055 Stn CSC, Victoria, B.C., Canada
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Buckman AH, Veldhoen N, Ellis G, Ford JKB, Helbing CC, Ross PS. PCB-associated changes in mRNA expression in killer whales (Orcinus orca) from the NE Pacific Ocean. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2011; 45:10194-10202. [PMID: 21985468 DOI: 10.1021/es201541j] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Killer whales in the NE Pacific Ocean are among the world's most PCB-contaminated marine mammals, raising concerns about implications for their health. Sixteen health-related killer whale mRNA transcripts were analyzed in blubber biopsies collected from 35 free-ranging killer whales in British Columbia using real-time quantitative polymerase chain reaction. We observed PCB-related increases in the expression of five gene targets, including the aryl hydrocarbon receptor (AhR; r(2) = 0.83; p < 0.001), thyroid hormone α receptor (TRα; r(2) = 0.64; p < 0.001), estrogen α receptor (ERα; r(2) = 0.70; p < 0.001), interleukin 10 (IL-10; r(2) = 0.74 and 0.68, males and females, respectively; p < 0.001), and metallothionein 1 (MT1; r(2) = 0.58; p < 0.001). Best-fit models indicated that population (dietary preference), age, and sex were not confounding factors, except for IL-10, where males differed from females. While the population-level consequences are unclear, the PCB-associated alterations in mRNA abundance of such pivotal end points provide compelling evidence of adverse physiological effects of persistent environmental contaminants in these endangered killer whales.
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Affiliation(s)
- Andrea H Buckman
- Institute of Ocean Sciences, Fisheries & Oceans Canada, P.O. Box 6000, 9860 West Saanich Road, Sidney, British Columbia V8L 4B2, Canada
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