Soil bacterial communities in constructed wetlands treated with swine wastewater using PCR-DGGE technique

Effect of Biogas Slurry on the Soil Properties and Microbial Composition in an Annual Ryegrass-Silage Maize Rotation System over a Five-Year Period

Soil health is seriously threatened by the overuse of chemical fertilizers in agricultural management. Biogas slurry is often seen as an organic fertilizer resource that is rich in nutrients, and its use has the goal of lowering the amount of chemical fertilizers used while preserving crop yields and soil health. However, the application of continuous biogas slurry has not yet been studied for its long-term impact on soil nutrients and microbial communities in a rotation system of annual ryegrass-silage maize (Zea mays). This study aimed to investigate the impacts on the chemical properties and microbial community of farmland soils to which chemical fertilizer (NPK) (225 kg ha-1), biogas slurry (150 t ha-1), and a combination (49.5 t ha-1 biogas slurry + 150 kg ha-1 chemical fertilizer) were applied for five years. The results indicated that compared to the control group, the long-term application of biogas slurry significantly increased the SOC, TN, AP, and AK values by 45.93%, 39.52%, 174.73%, and 161.54%, respectively; it neutralized acidic soil and increased the soil pH. TN, SOC, pH, and AP are all important environmental factors that influence the structural composition of the soil's bacterial and fungal communities. Chemical fertilizer application significantly increased the diversity of the bacterial community. Variation was observed in the composition of soil bacterial and fungal communities among the different treatments. The structure and diversity of soil microbes are affected by different methods of fertilization; the application of biogas slurry not only increases the contents of soil nutrients but also regulates the soil's bacterial and fungal community structures. Therefore, biogas slurry can serve as a sustainable management measure and offers an alternative to the application of chemical fertilizers for sustainable intensification.

Research on microbial community structure and treatment of dye wastewater with the enhancement of activated sludge by magnetic field at low temperature

This study characterized the effect of different magnetic field (MF) intensities (10-40 mT) on the degradation of dye wastewater by activated sludge and the diversity of the microbial community at a low temperature (5 °C). The examined MF range promoted the degradation of dye wastewater by the microorganisms in the activated sludge at a low temperature. It was found that the optimal degradation performance was achieved at 30 mT. Additionally, the maximum degradation efficiency of COD and chromaticity (66.30% and 60.87%, respectively) were also achieved at 30 mT and the peak TTC-dehydrogenase activity (TTC-DHA) was 9.44 mg TF g^-1 SS. Furthermore, it was revealed that MF enhancement increased the richness and diversity of activated sludge microorganisms, thus promoting the growth and reproduction of activated sludge microorganisms at low temperatures. Bacterial taxa known to effectively participate in the degradation of pollutants by activated sludge were enriched at 30 mT. The dominant bacteria under 30 mT were Flavobacterium, Hydrogenophaga, Gemmatimonadaceae, Zoogloea, Saprospiraceae, Pseudomonas, and Geothrix.

Positive Effects of Organic Substitution in Reduced-Fertilizer Regimes on Bacterial Diversity and N-Cycling Functionality in Greenhouse Ecosystem

Conventional fertilization in the greenhouses of North China used excessive amounts of chemical and organic fertilizer, resulting in soil degradation and severe agricultural non-point source pollution. A nine-year study was conducted on a loamy clay soil in Shijiazhuang, Hebei province, to investigate the effects of reduced-fertilizer input regimes on soil property, bacterial diversity, nitrogen (N) cycling and their interactions. There were four treatments, including high organic + chemical fertilizer application rate and three reduced-fertilizer treatments with swine manure, maize straw or no substitution of 50% chemical N. Treatments with reduced-fertilizer input prevented soil salinization and acidification as in local conventional fertilization after being treated for nine years. In comparison to chemical fertilizer only, swine manure or maize straw substitution maintained higher nutrient availability and soil organic C contents. Fertilizer input reduction significantly increased bacterial richness and shifted bacterial community after nine years, with decisive factors of EC, Olsen P and C/N ratio of applied fertilizer. Soil chemical characteristics (EC, pH and nutrients), aggregation and C/N ratio of applied fertilizer selected certain bacterial groups, as well as N-cycling functions. Reduced-fertilizer input decreased the potential nitrification and denitrification functioning of bacterial community, but only in organic substitution treatments. The results of this study suggested that fertilizer input reduction combined with organic C input has potential in reducing non-point source pollution and increasing N-use efficiency in greenhouse vegetable production in North China.

Deciphering the diversity patterns and community assembly of rare and abundant bacterial communities in a wetland system

Water microorganisms that have distinct contributions to community dynamics, including many rare taxa and few abundant taxa, are crucial to the wetland ecosystem functions. In this study, we comprehensively investigated the diversity patterns and assembly processes of rare and abundant taxa to strengthen our understanding of ecosystem function and diversity in a wetland system. The results showed that TN and NH₃-N were the most significant factors affecting the community structure in this wetland. Functional Annotation of Prokaryotic Taxa (FAPROTAX) revealed that functions associated with nitrogen removal were the most prevalent metabolic pathways in samples of regenerated wetland (RW). Co-occurrence network analysis revealed that nonrare taxa exhibited more interactions with rare taxa than with conspecifics and some microbial hubs belonged to rare taxa, which might play an instrumental role in maintaining the stability of the community structure. We found that the assembly of rare taxa with a lower niche breadth was mainly governed by homogeneous selection, implying that their higher sensitivity of these to environmental disturbances and changes in TN played significant roles in community assembly of rare taxa. In contrast, the assembly of abundant taxa with higher niche breadth was dominated by stochastic processes (undominated process and dispersal limitation) indicating that abundant taxa had greater responsibility for maintaining community structure when exposed to environmental fluctuations. These results broaden our understanding of the microbial structure, interactions and ecological assembly mechanisms underlying microbial dynamics in aquatic ecosystems, which are crucial for the management of microorganisms in the wetlands.

Removal of per- and poly-fluoroalkyl substances (PFASs) by wetlands: Prospects on plants, microbes and the interplay

Per- and polyfluoroalkyl substances (PFASs) represent a large family of synthetic organofluorine aliphatic compounds. They have been extensively produced since 1940s due to enormous applications as a surface-active agent, and water and oil repellent characteristics. PFASs are made to be non-biodegradable, therefore, many of them have been found in the environment albeit strict regulations have been in place since 2002. PFASs are extremely toxic compounds that can impart harm in both fauna and flora. Recent investigations have shown that wetlands might be useful for their removal from the environment as a passive and nature-based solution. To this end, understanding the role of plants, microbes, and their combined plant-microbe interplay is crucial because it could help design a sophisticated passive treatment wetland system. This review focuses on how these components (plants, microbe, substrate) can influence PFASs removal in wetlands under natural and controlled conditions. The information on underlying removal mechanisms is mostly retrieved from laboratory-based studies; however, pilot- and field-scale data are also presented to provide insights on their real-time performance. Briefly, a traditional wetland system works on the principles of phytouptake, bioaccumulation, and sorption, which are mainly due to the fact that PFASs are synthetic compounds that have very low reactivity in the environment. Nevertheless, recent investigations have also shown that Feammox process in wetlands can mineralize the PFASs; thus, opens new opportunities for PFASs degradation in terms of effective plant-microbe interplay in the wetlands. The choice of plants and bacterial species is however crucial, and the system efficiency relies on species-specific, sediment-specific and pollutant-specific principles. More research is encouraged to identify genetic elements and molecular mechanisms that can help us harness effective plant-microbe interplay in wetlands for the successful removal of PFASs from the environment.

Potential ecological implication of Cladophora oligoclora decomposition: Characteristics of nutrient migration, transformation, and response of bacterial community structure

During decay, the sediment microenvironment and water quality are severely affected by excessive proliferation of harmful algae such as filamentous green algae (FGA). The frequency of this FGA is increased through global warming and water eutrophication. In the present study, the degradation processes of a common advantage FGA Cladophora oligoclora and its effect on nitrogen and phosphorus nutrient structure and bacterial community composition at the sediment-water interface were investigated by stable isotope labelling and high-throughput sequencing. The results showed that the decomposition process of C. oligoclona was fast, stable, and difficult to degrade. The changes in sediment δ¹⁵N values reached 66.68 ‰ on day 40, which indicated that some of the nitrogen had migrated to the sediment from C. oligoclona litter. TN and NH₄⁺-N in the overlying water rapidly increased between days 0-10, NH₄⁺-N rose to 78.21% of TN on day 40, resulting in severe pollution of ammonia in the overlying water. The nitrogen forms and contents in the sediment are mainly derived from the increasing ammonia nitrogen release. The TP and IP in the overlying water increased to the highest concentrations of 6.68±0.64, 6.59±0.79 mg·L^-1 during the decomposition process, respectively, resulting in the migration of phosphate to the sediments with increasing phosphorus content. The abundance of the main dominant bacterial communities, such as Acinetobacter (0.08%-62.48%) and Pseudomonas (0.13%-20.36%) in sediments and overlying water has changed significantly. The correlation analysis results suggested that the phosphorus was mainly related to the bacterial community in the overlying water, while the various forms of nitrogen demonstrated a high relevance with the bacterial community in the sediment. Our research results will be valuable in evaluating the potential ecological risk of FGA decomposition and provide scientific support for shallow lake management and submerged vegetation restoration.

Bacterial community response to different nitrogen gradients of swine wastewater in surface flow constructed wetlands

How sediment bacterial community structure and diversity responds to different gradients of nitrogen (N) in swine wastewater is poorly understood. Here, the effects of different total nitrogen (TN) concentrations in swine wastewater on the microbial diversity and community composition in surface flow constructed wetlands (SFCWs) were investigated. The five concentration gradients included 2, 250, 300, 350, and 400 mg L^-1. Under high N concentrations (>300 mg L^-1), the Ace and Chao1 indexes increased, however, the Shannon index declined with increasing N concentration. The relative abundance of Chloroflexi, Acidobacteria and Actinobacteria showed an increasing trend. In contrast, under relatively low N concentrations (≤300 mg L^-1), Shannon index increased with increasing N concentration. The relative abundance of Bacteroidetes and Verrucomicrobia exhibited an increasing trend with increasing N concentration. TN, NH₄⁺ and NO₃^- significantly influenced on the microbial community distribution and composition (P < 0.05). These findings provide evidence that N concentration of swine wastewater is powerful predictor of bacterial diversity and community composition in SFCWs.

Bacterial community in a freshwater pond responding to the presence of perfluorooctanoic acid (PFOA)

Microbial community is an essential component of freshwater, providing valuable self-purification ecosystem service. Poly-and perfluoroalkyl substances (PFAS) have attracted increasing concerns in light of their potential ecotoxicological effects and ubiquitous occurrence in the aquatic environment. Knowledge about their influences on the microbial community, however, remains largely unknown. In the present study, Illumina high-throughput sequencing of 16S ribosomal DNA was applied to explore the changes in the dynamic and composition of the bacterial community upon exposure to perfluorooctanoic acid (PFOA) at different concentrations, i.e. 0.45 µg L^-1, 130 µg L^-1 and 5.0 mg L^-1. Principal component analysis (PCA) revealed variations of 57.2% for Principal Component 1 and 16.0% for Principal Component 2 of the total community. This clearly demonstrated changes in the bacterial community structure between the controls and PFOA-amended water samples. At the phylum level, the predominant bacteria in the original pond water included Proteobacteria (64.47%), Armatimonadetes (11.87%), Actinobacteria (10.81%), Bacteroidetes (6.36%), Chloroflexi (1.44%), Verrucomicrobia (0.61%) and Firmicutes (0.14%). The relative abundance of Actinobacteria, Bacteroidetes, and Verrucomicrobia decreased 26.5-38.8%, 40.5-70.7%, and 47.4-87.5%, respectively, upon PFOA exposure. By contrast, PFOA led to an obvious increase of Proteobacteria, by 12.5-18.6% and Chloroflexi by 19.1-74.4%. Results from this study provided the needed evidence that PFAS at high concentrations could affect the microbial community in a freshwater ecosystem. Principle Component Analysis (PCA) results suggest clear distinctions of bacterial community structure between the original pond water and the water samples spiked with PFOA based on pyrosequencing of 16S rRNA gene.

Cow manure application effectively regulates the soil bacterial community in tea plantation

Background

Cow manure is not only an agricultural waste, but also an organic fertilizer resource. The application of organic fertilizer is a feasible practice to mitigate the soil degradation caused by overuse of chemical fertilizers, which can affect the bacterial diversity and community composition in soils. However, to our knowledge, the information about the soil bacterial diversity and composition in tea plantation applied with cow manure fertilization was limited. In this study, we performed one field trial to research the response of the soil bacterial community to cow manure fertilization compared with urea fertilization using the high-throughput sequencing technique of 16S rRNA genes, and analyzed the relationship between the soil bacterial community and soil characteristics during different tea-picking seasons using the Spearman’s rank correlation analysis.

Results

The results showed that the soil bacterial communities were dominated by Proteobacteria, Bacteroidetes, Acidobacteria and Actinobacteria across all tea-picking seasons. Therein, there were significant differences of bacterial communities in soils with cow manure fertilization (CMF) and urea fertilization (UF) in three seasons: the relative abundance of Bacteroidetes in CMF was significantly higher than that in UF and CK in spring, and the relative abundance of Proteobacteria and Bacteroidetes in CMF was significantly higher than that in UF and CK in autumn. So, the distribution of the dominant phyla was mainly affected by cow manure fertilization. The diversity of bacterial communities in soils with cow manure fertilization was higher than that in soils with urea fertilization, and was the highest in summer. Moreover, soil pH, OM and AK were important environmental properties affecting the soil bacterial community structure in tea plantation.

Conclusions

Although different fertilizers and seasons affect the diversity and structure of soil microorganisms, the application of cow manure can not only improve the diversity of soil bacteria, but also effectively regulate the structure of soil bacterial community in tea plantation. So, cow manure fertilization is more suitable for tea plantation.

Nitrogen and phosphorus removal performance and bacterial communities in a multi-stage surface flow constructed wetland treating rural domestic sewage

A multi-stage surface flow constructed wetland (SFCW) is used to treat decentralized rural domestic sewage. The performance of a multi-stage SFCW located in Hunan, China, and the associated microbial community structures were investigated. The average removal rates of the multi-stage SFCW planted with Myriophyllum elatinoides were 1.0 g m^-2 d^-1, 0.84 g m^-2 d^-1, 61.3 mg m^-2 d^-1, and 85.3 mg m^-2 d^-1 for total nitrogen (TN), ammonia (NH₄⁺), nitrate (NO₃^-), and total phosphorus (TP), respectively. Furthermore, the sediment and presence of plants were found to be important for the removal N and P. The average removal rates by sediment and plants were 196.6 mg N m^-2 d^-1 and 49.9 mg P m^-2 d^-1, 17.6 mg N m^-2 d^-1 and 8.1 mg P m^-2 d^-1, respectively. The microbial community profiles demonstrated that Proteobacteria, Chloroflexi, Bacteroidetes, Firmicutes and Euryarchaeota were the predominant phyla in each stage and at different sampling times. The concentrations of NO₃^-, TP, TN, and NH₄⁺, and the pH of the sediment and water had a significant effect on the presence of denitrifying bacteria in the anaerobic environment. Whereas, dissolved oxygen (DO) and redox potential (Eh) had a significant effect on the presence of nitrifying bacteria in the aerobic environment. This research strongly supports that the use of the multi-stage SFCW promotes bacterial diversity and changes bacterial community in the sediment.

Environmental factors determining distribution and activity of anammox bacteria in minerotrophic fen soils

In contrast to the pervasive occurrence of denitrification in soils, anammox (anaerobic ammonium oxidation) is a spatially restricted process that depends on specific ecological conditions. To identify the factors that constrain the distribution and activity of anammox bacteria in terrestrial environments, we investigated four different soil types along a catena with opposing ecological gradients of nitrogen and water content, from an amended pasture to an ombrotrophic bog. Anammox was detected by polymerase chain reaction (PCR) and quantitative PCR (qPCR) only in the nitrophilic wet meadow and the minerotrophic fen, in soil sections remaining water-saturated for most of the year and whose interstitial water contained inorganic nitrogen. Contrastingly, aerobic ammonia oxidizing microorganisms were present in all examined samples and outnumbered anammox bacteria usually by at least one order of magnitude. 16S rRNA gene sequencing revealed a relatively high diversity of anammox bacteria with one Ca. Brocadia cluster. Three additional clusters could not be affiliated to known anammox genera, but have been previously detected in other soil systems. Soil incubations using 15N-labeled substrates revealed that anammox processes contributed about <2% to total N2 formation, leaving nitrification and denitrification as the dominant N-removal mechanism in these soils that represent important buffer zones between agricultural land and ombrotrophic peat bogs.

Distribution of perfluoroalkyl substances (PFASs) in aquatic plant-based systems: From soil adsorption and plant uptake to effects on microbial community

This study systematically explored the distribution of perfluoroalkyl substances (PFASs) through soil adsorption and plant bioaccumulation in aquatic plant-based systems, derived from a surface flow constructed wetland (CW) planted with Typha angustifolia. The water-soil-plant systems were fortified with eight perfluoroalkyl subsntances (PFASs) at different concentrations. The potential for individual PFAS adsorption onto soil substrate and bioaccumulation in the plants increased with the increasing PFAS initial concentrations. Longer-chain PFASs exhibited higher affinity to soil substrate compared to shorter-chain PFASs. The highest concentration in the soil was observed for PFOS (51.3 ng g^-1), followed by PFHxS (9.39 ng g^-1), and PFOA (5.53 ng g^-1) at low PFAS level. The perfluoroalkyl chain length dependent trend was also seen in the roots with the highest individual PFAS concentration for PFOS (68.9 ng g^-1), followed by PFOA (18.5 ng g^-1) and PFHxS (13.4 ng g^-1). By contrast, shorter-chain PFASs were preferentially translocated from roots to shoots in Typha angustifolia. A significant (p < 0.05) positive correlation between bioaccumulation factor (BAF_plant/water) (whole plant) and perfluoroalkyl chain length was observed. PFASs content in the plant compartments increased with increasing PFAS concentrations in the soil. Mass balance analysis indicates that approximately 40.7-99.6% of PFAS mass added to the system was adsorbed onto the soil and bioaccumulated in the plant tissues of T. angustifolia. Soil adsorption played a vital role in PFAS mass distribution. The results of Illumina high-throughput sequencing show that the bacterial diversity decreased upon PFAS exposure. The most predominant phyla retrieved were Proteobacteria (24.7-39.3%), followed by Actinobacteria (4.2-41.1%), Verrucomicrobia (7.9-25.1%), Bacteroidetes (10.2-20.4%), Cyanobacteria (0.4-16.5%), and Firmicutes (1.1-6.4%). The PFAS enrichment caused the changes (p > 0.05) in the structure and composition of bacterial community. This study helps to gain insight into a better understanding of the potential for PFASs distribution in an aquatic plant-based system and the impact on dynamic of microbial community exposed to PFASs.

Long-term effects of silver nanoparticles on performance of phosphorus removal in a laboratory-scale vertical flow constructed wetland

Silver nanoparticles (AgNPs) have been widely used in many fields, which raised concerns about potential threats to biological sewage treatment systems. In this study, the phosphorus removal performance, enzymatic activity and microbial population dynamics in constructed wetlands (CWs) were evaluated under a long-term exposure to AgNPs (0, 50, and 200 μg/L) for 450 days. Results have shown that AgNPs inhibited the phosphorus removal efficiency in a short-term exposure, whereas caused no obviously negative effects from a long-term perspective. Moreover, in the coexisting CW system of AgNPs and phosphorus, competition exhibited in the initial exposure phase, however, cooperation between them was observed in later phase. Enzymatic activity of acid-phosphatase at the moderate temperature (10-20°C) was visibly higher than that at the high temperature (20-30°C) and CWs with AgNPs addition had no appreciable differences compared with the control. High-throughput sequencing results indicated that the microbial richness, diversity and composition of CWs were distinctly affected with the extension of exposure time at different AgNPs levels. However, the phosphorus removal performance of CWs did not decline with the decrease of polyphosphate accumulating organisms (PAOs), which also confirmed that adsorption precipitation was the main way of phosphorus removal in CWs. The study suggested that AgNPs and phosphorus could be removed synergistically in the coexistence system. This work has some reference for evaluating the influences of AgNPs on the phosphorus removal and the interrelation between them in CWs.

Comparison of Clay Ceramsite and Biodegradable Polymers as Carriers in Pack-bed Biofilm Reactor for Nitrate Removal

In recent years, there is a trend of low C/N ratio in municipal domestic wastewater, which results in serious problems for nitrogen removal from wastewater. The addition of an external soluble carbon source has been the usual procedure to achieve denitrification. However, the disadvantage of this treatment process is the need of a closed, rather sophisticated and costly process control as well as the risk of overdosing. Solid-phase denitrification using biodegradable polymers as biofilm carrier and carbon source was considered as an attractive alternative for biological denitrification. The start-up time of the novel process using PCL (polycaprolactone) as biofilm carrier and carbon source was comparable with that of conventional process using ceramsite as biofilm carrier and acetate as carbon source. Further, the solid-phase denitrification process showed higher nitrogen removal efficiency under shorter hydraulic retention time (HRT) and low carbon to nitrogen (C/N) ratio since the biofilm was firmly attached to the clear pores on the surface of PCL carriers and in this process bacteria that could degrade PCL carriers to obtain electron donor for denitrification was found. In addition, solid-phase denitrification process had a stronger resistance of shock loading than that in conventional process. This study revealed, for the first time, that the physical properties of the biodegradable polymer played a vital role in denitrification, and the different microbial compositions of the two processes was the main reason for the different denitrification performances under low C/N ratio.

Bacillus-Dominant Airborne Bacterial Communities Identified During Asian Dust Events

Asian dust (AD) events have received significant attention due to their adverse effects on ecosystems and human health. However, detailed information about airborne pathogens associated with AD events is limited. This study monitored airborne bacterial communities and identified AD-specific bacteria and the potential hazards associated with these bacteria during AD events. Over a 33-month period, 40 air samples were collected under normal atmospheric conditions (non-AD events; n = 34) and during AD events (n = 6). The airborne bacterial communities in the air samples collected during non-AD events (non-AD sample) and AD events (AD sample) were evaluated using both culture-dependent and culture-independent methods. The bacterial diversity increased significantly, along with the 16S rRNA gene copy number, in AD samples (p < 0.05) and was positively correlated with PM₁₀ concentration. High throughput sequencing of the 16S rRNA gene revealed that the relative abundance of the phylum Firmicutes increased substantially in AD samples (44.3 ± 5.0%) compared with non-AD samples (27.8 ± 4.3%). Within the phylum Firmicutes, AD samples included a greater abundance of Bacillus species (almost 23.8%) than non-AD samples (almost 13.3%). Both culture-dependent and culture-independent methods detected common predominant species closely related to Bacillus cereus during AD events. Subsequent multilocus sequence typing (MLST) and enterotoxin gene assays confirmed the presence of virulence factors in B. cereus isolates from AD samples. Furthermore, the abundance of bceT, encoding enterotoxin in B. cereus, was significantly higher in AD samples (p < 0.05). The systematic characterization of airborne bacterial communities in AD samples in this study suggests that B. cereus pose risks to public health.

Enhanced nitrogen removal and quantitative analysis of removal mechanism in multistage surface flow constructed wetlands for the large-scale treatment of swine wastewater

Constructed wetlands have recently been studied as a form of green infrastructure for the enhanced removal of nitrogen (N). This study aimed to demonstrate the use of multistage surface flow constructed wetland (SFCW) for treatment of swine wastewater. The results showed chemical oxygen demand (COD), total nitrogen (TN), NH₄⁺, and NO₃^- removal rates of 16.3 g m^-2 d^-1, 9.14 g m^-2 d^-1, 7.75 g m^-2 d^-1, and 45.49 mg m^-2 d^-1, respectively. The sediment and plant absorption N rates were 2.44 g m^-2 d^-1, and 1.24 g m^-2 d^-1, respectively. Moreover, the microbial process which is the primary process, by which N is removed, accounted for 56.75-65.35%. Quantitative polymerase chain reaction (qPCR) revealed the highest microbial abundance in the segment of the SFCW with high N concentration. Ammonia-oxidizing bacteria (AOB) and nirK could be primarily responsible for the high removal rate of N. Factors like pH, DO, COD, N, and OM play an important role in influencing microbial abundance. It is suggested that the multistage SFCW has a promising future for the large scale treatment of swine wastewater.

Assessment of nutrient removal and microbial population dynamics in a non-aerated vertical baffled flow constructed wetland for contaminated water treatment with composite biochar addition

A novel composite biochar (NCB) was produced from the pyrolysis of co-fermentation products of sewage sludge, food wastes and rice straw, and exhibited higher nitrogen and phosphorus adsorption capacity due to the larger surface area (14.7 m² g^-1) and higher Ca content (51753.7 mg kg^-1) than single rice straw biochar. The addition of NCB was then investigated in a non-aerated vertical baffled flow constructed wetland (VBFCW) for contaminated water treatment. The VBFCW with NCB addition significantly improved COD_Mn, NH₄⁺-N, TN and TP removal efficiencies of 83.3 ± 5.3%, 95.9 ± 3.4%, 28.0 ± 4.0% and 59.5 ± 11.8%, respectively, at a hydraulic retention time (HRT) of 3 d. In addition, the TN and TP removal rates at a decreased HRT of 2 d were much higher than those at an HRT of 3 d without NCB addition. The presence of NCB in the VBFCW system enhanced nutrient adsorption and improved the enrichment of bacteria for organic and nitrogen removal mainly including the genera Bacillus and Lactococcus.

Response of sulfate-reducing bacteria and supporting microbial community to persulfate exposure in a continuous flow system

Coupling of chemical oxidation using persulfate with bioremediation has been proposed as a method to increase remedial efficacy at petroleum hydrocarbon contaminated sites. To support this integrated treatment approach, an understanding of persulfate impact on the indigenous microbial community is necessary for system design. As sulfate-reducing bacteria (SRB) are active in most aquifer systems and can utilize the sulfate generated from the degradation of persulfate, this study assessed the impact on SRB and the supporting anaerobic microbial community when exposed to persulfate in a continuous flow system. A series of bioreactors (1000 L) packed with anaerobic aquifer material were operated for an 8 month acclimatization period before being continuously subjected to benzene, toluene, ethylbenzene and xylenes (total BTEX 3 mg L-1). After 2 months, the bioreactors were then exposed to an unactivated persulfate solution (20 g L-1), or an alkaline-activated persulfate solution (20 g L-1, pH 12) then effluent-sampled for 60 days following. A combination of culture and molecular-based techniques were used to monitor SRB presence and structural profiles in the anaerobic SRB-specific and broader microbial community. Post-exposure, the rate of BTEX mass removal remained below pre-exposure values; however, trends suggest that full recovery would be expected. Rebound of SRB-specific and the associated microbial community to pre-exposure levels were observed in all exposed bioreactors. Structural community profiles identified recovery in both microbial species and diversity indices. Findings from this investigation demonstrate robustness of SRB in the presence of a supporting microbial community and, thus, are suitable organisms for target use during bioremediation in an integrated system with persulfate.

Constructed wetland microcosms as sustainable technology for domestic wastewater treatment: an overview

Constructed wetland microcosms (CWMs) are artificially designed ecosystem which utilizes both complex and ordinary interactions between supporting media, macrophytes, and microorganisms to treat almost all types of wastewater. CWMs are considered as green and sustainable techniques which require lower energy input, less operational and maintenance cost and provide critical ecological benefits such as wildlife habitat, aquaculture, groundwater recharge, flood control, recreational uses, and add aesthetic value. They are good alternatives to conventional treatment systems particularly for smaller communities as well as distant and decentralized locations. The pH, dissolved oxygen (DO), and temperature are the key controlling factors while several other parameters such as hydraulic loading rates (HLR), hydraulic retention time (HRT), diversity of macrophytes, supporting media, and water depth are critical to achieving better performance. From the literature survey, it is evaluated that the removal performance of CWMs can be improved significantly through recirculation of effluent and artificial aeration (intermittent). This review paper presents an assessment of CWMs as a sustainable option for treatment of wastewater nutrients, organics, and heavy metals from domestic wastewater. Initially, a concise note on the CWMs and their components are presented, followed by a description of treatment mechanisms, major constituents involved in the treatment process, and overall efficiency. Finally, the effects of ecological factors and challenges for their long-term operations are highlighted.

A Comparison of the Microbial Community and Functional Genes Present in Free-Living and Soil Particle-Attached Bacteria from an Aerobic Bioslurry Reactor Treating High-Molecular-Weight PAHs

High-molecular-weight (HMW) polycyclic aromatic hydrocarbons (PAHs) contaminate a wide range of ecosystems, including soils, groundwater, rivers and harbor sediments. The effective removal of HMW PAHs is a difficult challenge if a rapid remediation time and low economic cost are required. Bioremediation provides a cheap and eco-friendly cleanup strategy for the removal of HMW PAHs. Previous studies have focused on removal efficiency during PAHs bioremediation. In such studies, only limited research has targeted the bacterial communities and functional genes present in such bioremediation systems, specifically those of free-living (aqueous) bacteria and soil particle-attached bacteria present. In this study, a high-level of HMW PAH (1992 mg/kg pyrene) was bioremediated in an aerobic bioslurry reactor (ABR) for 42 days. The results showed a pseudo first order constant rate for pyrene biodegradation of 0.0696 day−1. The microbial communities forming free-living bacteria and soil-attached bacteria in the ABR were found to be different. An analysis of the aqueous samples identified free-living Mycobacterium spp., Pseudomonas putida, Rhodanobacter spp. and Burkholderia spp.; these organisms would seem to be involved in pyrene biodegradation. Various biointermediates, including phenanthrene, catechol, dibenzothiophene, 4,4′-bipyrimidine and cyclopentaphenanthrene, were identified and measured in the aqueous samples. When a similar approach was taken with the soil particle samples, most of the attached bacterial species did not seem to be involved in pyrene biodegradation. Furthermore, community level physiological profiling resulted in significantly different results for the aqueous and soil particle samples. Nevertheless, these two bacterial populations both showed positive signals for the presence of various dioxygenases, including PAHs-RHDα dioxygenases, riesk iron-sulfur motif dioxygenases and catechol 2,3-dioxygenases. The present findings provide a foundation that should help environmental engineers when designing future HMW PAH bioremediation systems that use the ABR approach.

Effect of cadmium contamination on the eutrophic secondary pollution of aquatic macrophytes by litter decomposition

The objective of this study was to identify the effect of cadmium (Cd) contamination on the decomposition of aquatic macrophyte litter and its eutrophic secondary pollution. A laboratory experiment was conducted with three treatments: water Cd contamination (Cd-w), litter Cd contamination (Cd-l) and control (CK). The results showed that CK and Cd-w exhibited the typical decomposition dynamics of litter, i.e., early rapid decomposition followed by slow decomposition, while the litter biomass loss (BL) in Cd-l exhibited an approximately linear relationship with time over the 64-day experimental period. The BL in Cd-l was only 10.8% in the initial 4 days, while that in CK and Cd-w was 59.0% and 54.8%, respectively. Cd inhibited the fluctuation of the water chemical oxygen demand (COD) by reducing both the early increase and the subsequent decrease. The increases in water total nitrogen (TN) and total phosphorus (TP) were inhibited by Cd contamination throughout most of the decomposition period. The alterations of litter quality during the plant growth period and of the bacterial community during the litter decomposition period by Cd contamination could explain the variations in litter decomposition rate and its eutrophic secondary pollution during the early and late decomposition stages, respectively. The Cd inhibition of the eutrophic secondary pollution of aquatic macrophytes has great significance for the improved evaluation of Cd contamination.

Is anammox a promising treatment process for nitrogen removal from nitrogen-rich saline wastewater?

Rapidly growing discharge of nitrogen-rich saline wastewater has significantly affect environment. However, due to the inhibition resulting from high salinity on microbes, it is still a challenge to treat nitrogen-rich saline wastewater efficiently. Anammox process, as a cost-effective and environment-friendly nitrogen removal approach, has shown a potential in treating nitrogen-rich saline wastewater. This review is conducted from a critical perspective and provides a comprehensive overview on the performance of anammox process treating nitrogen-rich saline wastewater. Two strategies including freshwater-derived anammox bacteria acclimatization and marine anammox bacteria enrichment are evaluated. Second, effects resulting from salinity on the performance of anammox reactor, the microbial communities and sludge characteristics are discussed. Third, salinity-tolerant mechanism of anammox bacteria is analyzed. This review also reveals some critical knowledge gaps and future research needs, which benefits application of anammox process to treat nitrogen-rich saline wastewater.

Continuous Flow-Constructed Wetlands for the Treatment of Swine Waste Water

The microbiological quality of treated waste water is always a concern when waste water is disposed to the environment. However, when treated appropriately, such water can serve many purposes to the general population. Therefore, the treatment and removal of contaminants from swine waste water by continuous flow-constructed wetlands involves complex biological, physical, and chemical processes that may produce better quality water with reduced levels of contaminants. Swine waste contains E. coli populations and other bacterial contaminants originating from swine houses through constructed wetlands, but little is known about E. coli population in swine waste water. To assess the impacts of seasonal variations and the effect of the wetland layout/operations on water quality, E. coli isolates were compared for genetic diversity using repetitive extragenic palindromic polymerase chain reaction (REP-PCR). None of the isolates was confirmed as Shiga toxin producing E. coli O157:H7 (STEC); however, other pathotypes, such as enterotoxigenic E. coli (ETEC) were identified. Using a 90% similarity index from REP-PCR, 69 genotypes out of 421 E. coli isolates were found. Our data showed that the E. coli population was significantly (p = 0.036) higher in November than in March and August in most of the wetland cells. Furthermore, there was a significant (p = 0.001) reduction in E. coli populations from wetland influent to the final effluent. Therefore, the use of continuous flow-constructed wetlands may be a good treatment approach for reducing contaminants from different waste water sources.

Impact of treated wastewater for irrigation on soil microbial communities

The use of treated wastewater (TWW) for irrigation has been suggested as an alternative to use of fresh water because of the increasing scarcity of fresh water in arid and semiarid regions of the world. However, significant barriers exist to widespread adoption due to some potential contaminants that may have adverse effects on soil quality and or public health. In this study, we investigated the abundance and diversity of bacterial communities and the presence of potential pathogenic bacterial sequences in TWW in comparison to synthetic fresh water (SFW) using pyrosequencing. The results were analyzed using UniFrac coupled with principal coordinate analysis (PCoA) to compare diversity and abundance of different bacterial groups in TWW irrigated soils to soils treated with SFW. Shannon diversity index values (H') suggest that microbial diversity was not significantly different (P<0.086) between soils with TWW and SFW. Pyrosequencing detected sequences of 17 bacterial phyla with Proteobacteria (32.1%) followed by Firmicutes (26.5%) and Actinobacteria (14.3%). Most of the sequences associated with nitrifying bacteria, nitrogen-fixing bacteria, carbon degraders, denitrifying bacteria, potential pathogens, and fecal indicator bacteria were more abundant in TWW than in SFW. Therefore, TWW effluent may contain bacterial that may be very active in many soil functions as well as some potential pathogens.

Seasonality distribution of the abundance and activity of nitrification and denitrification microorganisms in sediments of surface flow constructed wetlands planted with Myriophyllum elatinoides during swine wastewater treatment

Surface flow constructed wetlands (SFCWs) planted with Myriophyllum elatinoides for treatment of swine wastewater were examined to evaluate the effect of season, segment (site S1, S2, and S3), and treatment (100mgL^-1 TN, T1; 300mgL^-1 TN, T2; 500mgL^-1 TN, T3) on the activity, and abundances of nitrifying and, denitrifying microorganisms, and on the abundance of sediment bacteria. The activity and abundances of nitrifiers, denitrifiers, and the abundance of bacteria were the highest in T3 samples, especially in S1 (P<0.05). The potential nitrification rate (PNR) was highest in the summer and potential denitrification rate (PDR) showed an increasing trend over seasons. The abundance of ammonia-oxidizing bacteria (AOB) was strongly correlated with PNR, while abundance of denitrifying gene (nirK) was strongly correlated with PDR. These results indicate that M. elatinoides SFCWs for swine wastewater treatment stimulate the growth of nitrifiers, denitrifiers and bacteria in sediments.

Myriophyllum aquaticum Constructed Wetland Effectively Removes Nitrogen in Swine Wastewater

Removal of nitrogen (N) is a critical aspect in the functioning of constructed wetlands (CWs), and the N treatment in CWs depends largely on the presence and activity of macrophytes and microorganisms. However, the effects of plants on microorganisms responsible for N removal are poorly understood. In this study, a three-stage surface flow CW was constructed in a pilot-scale within monospecies stands of Myriophyllum aquaticum to treat swine wastewater. Steady-state conditions were achieved throughout the 600-day operating period, and a high (98.3%) average ammonia removal efficiency under a N loading rate of 9 kg ha^-1 d^-1 was observed. To determine whether this high efficiency was associated with the performance of active microbes, the abundance, structure, and interactions of microbial community were compared in the unvegetated and vegetated samples. Real-time quantitative polymerase chain reactions showed the abundances of nitrifying genes (archaeal and bacterial amoA) and denitrifying genes (nirS, nirK, and nosZ) were increased significantly by M. aquaticum in the sediments, and the strongest effects were observed for the archaeal amoA (218-fold) and nirS genes (4620-fold). High-throughput sequencing of microbial 16S rRNA gene amplicons showed that M. aquaticum greatly changed the microbial community, and ammonium oxidizers (Nitrosospira and Nitrososphaera), nitrite-oxidizing bacteria (Nitrospira), and abundant denitrifiers including Rhodoplanes, Bradyrhizobium, and Hyphomicrobium, were enriched significantly in the sediments. The results of a canonical correspondence analysis and Mantle tests indicated that M. aquaticum may shift the sediment microbial community by changing the sediment chemical properties. The enriched nitrifiers and denitrifiers were distributed widely in the vegetated sediments, showing positive ecological associations among themselves and other bacteria based on phylogenetic molecular ecological networks.

Spatiotemporal and species variations in prokaryotic communities associated with sediments from surface-flow constructed wetlands for treating swine wastewater

Microorganisms are the main mechanisms of pollutants removals in constructed wetlands (CWs) used for wastewater treatment. However, the different biological processes and variations of prokaryotic community in CWs remain poorly understood. In this study, we applied a high-throughput sequencing technique to investigate the prokaryotic communities associated with sediments from pilot-scale surface-flow constructed wetlands (SFCWs) treating swine wastewater (SW) of varying strengths. Our results revealed that highly diverse prokaryotic communities were present in the SFCWs, with Proteobacteria (16.44-44.44%), Acidobacteria (3.25-24.40%), and Chloroflexi (5.77-14.43%) being the major phyla, and Nitrospira (4.14-12.02%), the most dominant genus. The prokaryotic communities in the sediments varied greatly with location and season, which markedly altered the microenvironmental conditions. Principal co-ordinates analysis indicated that SW strength significantly influenced the community structure in sediments of the SFCWs, and canonical correspondence analysis illustrated that the shifts in prokaryotic communities were strongly related to NO₃^--N and TN in winter; and in summer with NH₄⁺N, NO₃^--N, NO₂^--N, TN, TP, SOM, and pH. In conclusion, the use of high-throughput sequencing greatly enhanced our understanding of prokaryotic communities with different functional groups in SFCWs.

A novel method for contributing to composting start-up at low temperature by inoculating cold-adapted microbial consortium

Low temperature climate presented a technical challenge to start-up composting in northern region of China. This study investigated if the cold-adapted microbial consortium (CAMC) could promote composting start-up at low temperature. In this work, the CAMC was inoculated when food waste was composted at 10°C. The results showed that inoculating CAMC accelerated the piles temperature effectively, the piles passed through the start-up period within 37h. Moreover, the inoculants could enhance the abundances of dominant strains related to organic matters degradation rate. Redundancy analysis (RDA) indicated that the relationships among indigenous bacteria, organic substrates degradation and temperature evolution were influenced by the inoculants. Furthermore, the heat generation value and degradation rate of the hydrolysable carbohydrate, lipids and protein were significantly enhanced with CAMC inoculated. This work demonstrated that inoculating CAMC was beneficial to composting self-heating, it provided a novel biotechnology support to ensure the normal start-up of winter composting.

Organic carbon and nitrogen availability determine bacterial community composition in paddy fields of the Indo-Gangetic plain

Soil quality is an important factor and maintained by inhabited microorganisms. Soil physicochemical characteristics determine indigenous microbial population and rice provides food security to major population of the world. Therefore, this study aimed to assess the impact of physicochemical variables on bacterial community composition and diversity in conventional paddy fields which could reflect a real picture of the bacterial communities operating in the paddy agro-ecosystem. To fulfill the objective; soil physicochemical characterization, bacterial community composition and diversity analysis was carried out using culture-independent PCR-DGGE method from twenty soils distributed across eight districts. Bacterial communities were grouped into three clusters based on UPGMA cluster analysis of DGGE banding pattern. The linkage of measured physicochemical variables with bacterial community composition was analyzed by canonical correspondence analysis (CCA). CCA ordination biplot results were similar to UPGMA cluster analysis. High levels of species-environment correlations (0.989 and 0.959) were observed and the largest proportion of species data variability was explained by total organic carbon (TOC), available nitrogen, total nitrogen and pH. Thus, results suggest that TOC and nitrogen are key regulators of bacterial community composition in the conventional paddy fields. Further, high diversity indices and evenness values demonstrated heterogeneity and co-abundance of the bacterial communities.

Constructed Wetlands Revisited: Microbial Diversity in the -omics Era

Constructed wetlands (CWs) constitute an interesting alternative option to conventional systems for wastewater treatment. This technology is based on the utilization of the concerted activity of microorganisms for the removal of contaminants. Consequently, knowledge on the microbial assemblages dwelling CWs and the different environmental factors which can alter their activities is crucial for understanding their performance. In the last decades, the use of molecular techniques to characterize these communities and more recently, application of -omics tools, have broaden our view of microbial diversity and function in wastewater microbiology. In this manuscript, a review of the current knowledge on microbial diversity in CWs is offered, placing particular emphasis on the different molecular studies carried out in this field. The effect of environmental conditions, such as plant species, hydraulic design, water depth, organic carbon, temperature and substrate type on prokaryotic communities has been carefully revised, and the different studies highlight the importance of these factors in carbon, nitrogen and sulfur cycles. Overall, the novel -omics open a new horizon to study the diversity and ecophysiology of microbial assemblages and their interactions in CWs, particularly for those microorganisms belonging to the rare biosphere not detectable with conventional molecular techniques.

Microbial Character Related Sulfur Cycle under Dynamic Environmental Factors Based on the Microbial Population Analysis in Sewerage System

The undesired sulfur cycle derived by microbial population can ultimately causes the serious problems of sewerage systems. However, the microbial community characters under dynamic environment factors in actual sewerage system is still not enough. This current study aimed to character the distributions and compositions of microbial communities that participate in the sulfur cycle under the dynamic environmental conditions in a local sewerage system. To accomplish this, microbial community compositions were assessed using 454 high-throughput sequencing (16S rDNA) combined with dsrB gene-based denaturing gradient gel electrophoresis. The results indicated that a higher diversity of microbial species was present at locations in sewers with high concentrations of H₂S. Actinobacteria and Proteobacteria were dominant in the sewerage system, while Actinobacteria alone were dominant in regions with high concentrations of H₂S. Specifically, the unique operational taxonomic units could aid to characterize the distinct microbial communities within a sewerage manhole. The proportion of sulfate-reducing bacteria, each sulfur-oxidizing bacteria (SOB) were strongly correlated with the liquid parameters (DO, ORP, COD, Sulfide, NH₃-N), while the Mycobacterium and Acidophilic SOB (M&A) was strongly correlated with gaseous factors within the sewer, such as H₂S, CH₄, and CO. Identifying the distributions and proportions of critical microbial communities within sewerage systems could provide insights into how the microbial sulfur cycle is affected by the dynamic environmental conditions that exist in sewers and might be useful for explaining the potential sewerage problems.

Fungal pretreatment of raw digested piggery wastewater enhancing the survival of algae as biofuel feedstock

BACKGROUND

Understanding about the impact of white rot fungi on indigenous bacterial communities, NH₄⁺ and turbidity in digested piggery wastewater, will allow the optimization of wastewater treatment methods and its use as a feasible medium for algal growth. Here, the white rot fungi were inoculated into undiluted and unsterilized digested piggery wastewater under different temperatures and pH regimes in order to lower the pretreatment cost. Diversity and abundance of the bacterial communities in the pretreated wastewater were assessed by PCR-denaturing gradient gel electrophoresis coupled with 16S rDNA sequencing.

RESULTS

The research showed a significant reduction on the microbial diversity with the presence of white rot fungi which occur at pH 6. The distribution and presence of bacteria taxa were strongly correlated with NH₄⁺ concentration, pH, and the presence of white rot fungi. Variance partition analysis also showed that the effect on the chlorophyll content of algae in fungi-filtered wastewater was as the following hierarchy: bacterial diversity > NH₄⁺ > turbidity. Therefore, the algae in treated wastewater with less abundance of bacteria proliferated more successfully, indicating that bacterial community not only played an important role in algal growth but also imposed a strong top-down control on the algal population. The algae grown in wastewater treated with fungi reached the highest specific growth rate (0.033 day^-1), whereas the controls displayed the negative specific growth rate. The fatty acid composition varied markedly in C16:0 and C18:0 between these treatments, with a higher content of C16:0.

CONCLUSIONS

This study firstly showed that Chlorella can grow as cost-effective biofuel feedstocks in undiluted and unsterilized digested wastewater with high ammonium concentration and dark brown color because the bacterial abundance of digested piggery wastewater could be reduced greatly by the white rot fungi.

Nitrogen transforming bacteria within a full-scale partially saturated vertical subsurface flow constructed wetland treating urban wastewater

The aim of this study was to characterize the nitrogen transforming bacterial communities within a partially saturated vertical subsurface flow constructed wetland (VF) treating urban wastewater in southern Brazil. The VF had a surface area of 3144m², and was divided into four wetland cells, out of which two were operated while the other two rested, alternating cycles of 30days. The nitrifying and denitrifying bacterial communities were characterized in wetland cell 3 (764m² surface area) over a period of 12months by using the FISH technique. Samples were collected monthly (from Feb 2014 to Feb 2015) from different layers within the vertical profile, during operation and rest periods, comprising a total of 6 sampling campaigns while the cell was in operation and another 6 when the cell was at rest. This wetland cell operated with an average organic loading rate (OLR) of 4gCODm^-2d^-1 and a hydraulic loading rate of 24.5mmd^-1. The rest periods of the wetland cell presented influences on the abundance of ammonia-oxidizing bacteria (AOB) (8% and 3% for feed and rest periods, respectively), and nitrite-oxidizing bacteria (NOB) (5% and 2% for feed and rest periods, respectively). However, there was no influence of the rest periods on the denitrifying bacteria. AOB were only identified in the top layer (AOB β-proteobacteria) in both operational and rest periods. On the other hand, the NOB (Nistrospirae and Nitrospina gracilis) were identified in feed periods just in the top layer and during rest periods just in the intermediate layer. The denitrifying bacteria (Pseudomonas spp. and Thiobacillus denitrificans) were identified from the intermediate layer downwards, and remained stable in both periods. Based on the identified bacterial dynamics, the partially saturated VF wetland operated under low OLR enabled favorable conditions for simultaneous nitrification and denitrification.

A regulating method for reducing nitrogen loss based on enriched ammonia-oxidizing bacteria during composting

In this study, enriched ammonia-oxidizing bacteria (AOB) were acquired by domesticated cultivation, followed by inoculation into the co-composting of rice straw and chicken manure. The effect of inoculation on nitrogen loss, the succession of bacterial community and the correlation between the key bacteria and environmental factors were investigated. The results showed that inoculation could reduce ammonia emission and nitrogen loss by transforming ammonium into nitrite. Inoculation also increased the amount and abundance of bacterial community. Redundancy analysis showed that indigenous and exogenous bacteria in inoculation group, compared with those in control group, were positively correlated with nitrite but negatively correlated with ammonium, demonstrating that the former contributed to the lower ammonia emission and nitrogen loss. Based on these results, the application of enriched AOB was proposed as a new method of resource recycle and improvement of composting technology.

Evaluation of an integrated constructed wetland to manage pig manure under Mediterranean climate

Pig manure is a complex mixture with excessive nutrients such as ammonium, microbial pathogens and may contain contaminants such as antibiotics. Conventional pig manure management practices caused water contamination. Sludge treatment wetland has been evaluated to determine its potential use under Mediterranean climate aiming at a parsimonious use of water and preventing water contamination, two major steps to preserve water resources in the Mediterranean Basin. Preliminary NH4-N degradation was tested using aeration process and/or addition of commercial bacterial products. Aeration alone appeared to be sufficient to ensure nitrogen transformation of the pig manure at lab small-scale (10 L) and medium-scale (300 L). Selected plant species e.g., Carex hispida for use in the integrated constructed wetland tolerated the nitrogen content after aeration enabling their use in a treatment vertical bed.

Characterization of microbial communities in wetland mesocosms receiving caffeine-enriched wastewater

A 454 high-throughput pyrosequencing approach was used to characterize the structures of microbial communities in wetland mesocosms receiving caffeine-enriched wastewater at a concentration of 250 μg L(-1). The removal efficiencies of caffeine in the planted beds (93.0 %) were significantly (p < 0.05) higher than those in the unplanted beds (81.4 %). Bacterial diversity was decreased by 25 and 22.4 %, respectively, in both planted and unplanted mesocosms after 210-day operation. The results of taxonomic analyses suggested that chronic exposure of wetland ecosystems to caffeine could lead to moderate shifts in microbial community composition. In total, 2156 operational taxonomic units (OTUs) were generated and 20 phyla comprising 260 genera were identified. The major phylogenetic groups at phylum level included Firmicutes (39 %), Actinobacteria (25.1 %), Proteobacteria (17.1 %), Synergistetes (5.6 %), and Chloroflexi (5.5 %). Bacilli and Synergistia increased in abundance in the planted mesocosms, while for the unplanted mesocosms, Actinobacterial, Clostridia and Betaproteobacteria exhibited increased proportion under the exposure of caffeine. At genus level, Propionibacterium, Staphylococcus, Bacillus, and Streptococcus were found to be increased in abundance after caffeine treatment. As for the response of fungal community to caffeine enrichment, genus like Cladosporium, Emericellopsis, Aspergillus, and Phoma were found to be resistant to caffeine disturbance. When compared to the microbial community between planted and unplanted mesocosms, a distinct community profile for both bacteria and fungi community was observed. The presence of plants had a remarkable effect on the structure of microbial community, helping buffer against the stress associated with caffeine exposure.

Temporal and spatial variations of contaminant removal, enzyme activities, and microbial community structure in a pilot horizontal subsurface flow constructed wetland purifying industrial runoff

A pilot-scale horizontal subsurface flow constructed wetland (HSSFCW) was operated to purify industrial runoff containing polycyclic aromatic hydrocarbons (PAHs) in Guangzhou, China. Synthetic industrial runoff was fed into the HSSFCW with continuous flow at an average loading rate of 0.128 m(3)/(m(2)/day) for about 2 years. Pollutants such as chemical oxygen demand (COD), total phosphorus (TP), and phenanthrene were mainly removed in the front quarter of the HSSFCW, and in the vertical direction, the average removal rates of COD, TP, total nitrogen (TN), ammonia, and phenanthrene of the upper layer were 64.23, 71.16, 50.81, 65.38, and 92.47 %, which were 1.23, 2.08, 1.48, 1.72, and 1.17 times higher than those of the bottom, respectively. Correlations among pollutant removal, soil environmental indexes, enzyme activities, and soil microbial community structure were evaluated. Enzyme assays (dehydrogenase, catalase, nitrate reductase, and polyphenol oxidase) showed significant associations between enzyme activities and pollutant removal (p < 0.01 and p < 0.05). Soil microbial community structure was assessed with denaturing gradient gel electrophoresis (DGGE) fingerprinting method, and results demonstrated that bacterial communities remained relatively stable in different seasons. Proteobacteria and Bacteroidetes were found to be the dominant phyla of the bacteria communities, and three clones which might be related to the biodegradation of phenanthrene were also detected. Results of the present work would broaden the knowledge of the purification mechanism of contaminants in the constructed wetlands (CWs), and identification of the treatment performances and temporal and spatial variations of biological activities of subsurface flow constructed wetlands (SSFCWs) would help to improve the operations of CWs for surface water protection.

Microbial abundance and community in subsurface flow constructed wetland microcosms: role of plant presence

In this research, the role of plants in improving microorganism growth conditions in subsurface flow constructed wetland (CW) microcosms was determined. In particular, microbial abundance and community were investigated during summer and winter in Phragmites australis-planted CW microcosms (PA) and unplanted CW microcosms (control, CT). Results revealed that the removal efficiencies of pollutants and microbial community structure varied in winter with variable microbial abundance. During summer, PA comprised more dominant phyla (e.g., Proteobacteria, Actinobacteria, and Bacteroidetes), whereas CT contained more Cyanobacteria and photosynthetic bacteria. During winter, the abundance of Proteobacteria was >40 % in PA but dramatically decreased in CT. Moreover, Cyanobacteria and photosynthetic bacterial dominance in CT decreased. In both seasons, bacteria were more abundant in root surfaces than in sand. Plant presence positively affected microbial abundance and community. The potential removal ability of CT, in which Cyanobacteria and photosynthetic bacteria were abundant during summer, was more significantly affected by temperature reduction than that of PA with plant presence.

Bacterial community dynamics in surface flow constructed wetlands for the treatment of swine waste

Constructed wetlands are generally used for the removal of waste from contaminated water. In the swine production system, wastes are traditionally flushed into an anaerobic lagoon which is then sprayed on agricultural fields. However, continuous spraying of lagoon wastewater on fields can lead to high N and P accumulations in soil or lead to runoff which may contaminate surface or ground water with pathogens and nutrients. In this study, continuous marsh constructed wetland was used for the removal of contaminants from swine waste. Using pyrosequencing, we assessed bacterial composition within the wetland using principal coordinate analysis (PCoA) which showed that bacterial composition from manure influent and lagoon water were significantly different (P=0.001) from the storage pond to the final effluent. Canonical correspondence analysis (CCA) showed that different bacterial populations were significantly impacted by ammonium--NH4 (P=0.035), phosphate--PO4(3-) (P=0.010), chemical oxygen demand--COD (P=0.0165), total solids--TS (P=0.030), and dissolved solids--DS (P=0.030) removal, with 54% of the removal rate explained by NH4+PO4(3-) according to a partial CCA. Our results showed that different bacterial groups were responsible for the composition of different wetland nutrients and decomposition process. This may be the major reason why most wetlands are very efficient in waste decomposition.

Potential pathogens, antimicrobial patterns and genotypic diversity of Escherichia coli isolates in constructed wetlands treating swine wastewater

Escherichia coli populations originating from swine houses through constructed wetlands were analyzed for potential pathogens, antimicrobial susceptibility patterns, and genotypic diversity. Escherichia coli isolates (n = 493) were screened for the presence of the following virulence genes: stx1, stx2 and eae (Shiga toxin-producing E. coli [STEC]), heat-labile enterotoxin (LT) genes and heat stable toxin STa and STb (enterotoxigenic E. coli (ETEC), cytotoxin necrotizing factors 1 and 2 (cnf1 and cnf2 [necrotoxigenic E. coli- NTEC]), as well as O and H antigens, and the presence of the antibiotic resistance genes blaTEM, blaSHV, blaCMY-2, tet A, tet B, tet C, mph(A), aadA, StrA/B, sul1, sul2 and sul3. The commensal strains were further screened for 16 antimicrobials and characterized by BOX AIR-1 PCR for unique genotypes. The highest antibiotic resistance prevalence was for tetracycline, followed by erythromycin, ampicillin, streptomycin, sulfisoxazole and kanamycin. Our data showed that most of the isolates had high distribution of single or multidrug-resistant (MDR) genotypes. Therefore, the occurrence of MDR E. coli in the wetland is a matter of great concern due to possible transfer of resistance genes from nonpathogenic to pathogenic strains or vice versa in the environment.

Carbon sequestration in a surface flow constructed wetland after 12 years of swine wastewater treatment

Constructed wetlands used for the treatment of swine wastewater may potentially sequester significant amounts of carbon. In past studies, we evaluated the treatment efficiency of wastewater in a marsh-pond-marsh design wetland system. The functionality of this system was highly dependent on soil carbon content and organic matter turnover rate. To better understand system performance and carbon dynamics, we measured plant dry matter, decomposition rates and soil carbon fractions. Plant litter decomposition rate was 0.0052 g day(-1) (±0.00119 g day(-1)) with an estimated half-life of 133 days. The detritus layer accumulated over the soil surface had much more humin than other C fractions. In marsh areas, soil C extracted with NaOH had four to six times higher amounts of humic acid, fulvic acid and humin than soil C extracted by cold and hot water, HCl/HF, and Na pyruvate. In the pond area, humic acid, fulvic acid and humin content were two to four times lower than in the marsh area. More soil C and N was found in the marsh area than in the pond area. These wetlands proved to be large sinks for stable C forms.

Investigation of denitrifying microbial communities within an agricultural drainage system fitted with low-grade weirs

Enhancing wetland characteristics in agricultural drainage ditches with the use of low-grade weirs, has been identified as a best management practice (BMP) to mitigate nutrient runoff from agriculture landscapes. A major objective of utilizing low-grade weirs as a BMP includes fostering environments suitable for the biogeochemical removal of nitrogen via denitrification. This study examined the spatial resolution of microbial communities involved in denitrification in agricultural drainage systems fitted with low-grade weirs. Appropriate sampling scales of microbial communities were investigated using 16S rRNA and denitrification functional genes nosZ, nirS, and nirK via quantitative polymerase chain reaction (qPCR) and terminal-restriction fragment length polymorphism (T-RFLP) analysis. Genes 16S rRNA, nosZ, and nirS were all successfully detected in soil samples, while nirK was below the detection limit throughout the study. Utilizing a combination of three sampling regimes (management, reach, catchment) was found to be effective in capturing microbial community patterns, as ANOVA results revealed nosZ gene abundance was significantly greater at the management rather than reach scale (p = 0.045; F = 3.311), although, no significant differences were observed in 16S rRNA or nirS between sampling scales (p > 0.05). A Pearson correlation matrix confirmed that 16S rRNA and nosZ gene abundances were positively correlated with soil carbon (C), nitrogen (N), and moisture, while nirS abundance was only positively correlated with soil C and soil moisture. This highlights the potential for wetland-like characteristics to be recovered in agricultural drainage systems, as weir proximity is observed to enhance soil moisture and conditions for N remediation. This study provides the basis for additional investigations of these unique environments in the Mississippi Alluvial Valley and a starting point for adaptive management to enhance agricultural drainage systems for microbial communities towards nutrient remediation goals.

Bacterial concentration and diversity in fresh tropical shrimps (Penaeus notialis) and the surrounding brackish waters and sediment

This study aimed at determining bacterial concentration and diversity in fresh tropical shrimps (Penaeus notialis) and their surrounding brackish waters and sediment. Freshly caught shrimp, water and sediment samples were collected in Lakes Nokoue and Aheme in Benin (West Africa) during two periods with different water salinity and temperature. We used complementary culture-dependent and culture-independent methods for microbiota analysis. During both sampling periods, total mesophilic aerobic counts in shrimp samples ranged between 4.4 and 5.9 log CFU/g and were significantly higher than in water or sediment samples. In contrast, bacterial diversity was higher in sediment or water than in shrimps. The dominant phyla were Firmicutes and Proteobacteria in shrimps, Firmicutes, Proteobacteria, and Actinobacteria in water, and Proteobacteria and Chloroflexi in sediment. At species level, distinct bacterial communities were associated with sediment, water and shrimps sampled at the same site the same day. The study suggests that the bacterial community of tropical brackish water shrimps cannot be predicted from the microbiota of their aquatic environment. Thus, monitoring of microbiological quality of aquatic environments might not reflect shrimp microbiological quality.

Operational, design and microbial aspects related to power production with microbial fuel cells implemented in constructed wetlands

This work aimed at determining the amount of energy that can be harvested by implementing microbial fuel cells (MFC) in horizontal subsurface constructed wetlands (HSSF CWs) during the treatment of real domestic wastewater. To this aim, MFC were implemented in a pilot plant based on two HSSF CW, one fed with primary settled wastewater (Settler line) and the other fed with the effluent of a hydrolytic up-flow sludge blanket reactor (HUSB line). The eubacterial and archaeal community was profiled on wetland gravel, MFC electrodes and primary treated wastewater by means of 16S rRNA gene-based 454-pyrosequencing and qPCR of 16S rRNA and mcrA genes. Maximum current (219 mA/m(2)) and power (36 mW/m(2)) densities were obtained for the HUSB line. Power production pattern correlated well with water level fluctuations within the wetlands, whereas the type of primary treatment implemented had a significant impact on the diversity and relative abundance of eubacteria communities colonizing MFC. It is worth noticing the high predominance (13-16% of relative abundance) of one OTU belonging to Geobacter on active MFC of the HUSB line that was absent for the settler line MFC. Hence, MFC show promise for power production in constructed wetlands receiving the effluent of a HUSB reactor.

Use of PCR-DGGE based molecular methods to assessment of microbial diversity during anaerobic treatment of antibiotic combinations

As it is currently often not know how anaerobic bioreactors, e.g. for biogas production, react if the substrate is contaminated by toxic compounds like antibiotics. This study evaluated how anaerobic sequencing batch reactors were affected by amendments of different antibiotics and stepwise increasing concentrations. The compositions of microbial community were determined in the seed sludge using 16S rRNA gene clone libraries and PCR-DGGE analyses were used for the detection of microbial community changes upon antibiotics additions. According to PCR-DGGE results, the syntrophic interaction of acetogens and methanogens is critical to the performance of the reactors. Failure to maintain the stability of these microorganisms resulted in a decrease in the performance and stability of the anaerobic reactors. Assessment of DGGE data is also useful for suggesting the potential to control ultimate microbial community structure, especially derived from Gram-negative bacteria, through bioaugmentation to successful for antibiotic biodegradation.

Low-potential respirators support electricity production in microbial fuel cells

In this paper, we analyse how electric power production in microbial fuel cells (MFCs) depends on the composition of the anodic biofilm in terms of metabolic capabilities of identified sets of species. MFCs are a promising technology for organic waste treatment and sustainable bioelectricity production. Inoculated with natural communities, they present a complex microbial ecosystem with syntrophic interactions between microbes with different metabolic capabilities. Our results demonstrate that low-potential anaerobic respirators--that is those that are able to use terminal electron acceptors with a low redox potential--are important for good power production. Our results also confirm that community metabolism in MFCs with natural inoculum and fermentable feedstock is a two-stage system with fermentation followed by anode respiration.

Effects of cowpea (Vigna unguiculata) root mucilage on microbial community response and capacity for phenanthrene remediation

Biodegradation of polycyclic aromatic hydrocarbons (PAHs) is normally limited by their low solubility and poor bioavailability. Prior research suggests that biosurfactants are synthesized as intermediates during the production of mucilage at the root tip. To date the effects of mucilage on PAH degradation and microbial community response have not been directly examined. To address this question, our research compared 3 cowpea breeding lines (Vigna unguiculata) that differed in mucilage production for their effects on phenanthrene (PHE) degradation in soil. The High Performance Liquid Chromatography results indicated that the highest PHE degradation rate was achieved in soils planted with mucilage producing cowpea line C1, inoculated with Bradyrhizobium, leading to 91.6% PHE disappearance in 5 weeks. In root printing tests, strings treated with mucilage and bacteria produced larger clearing zones than those produced on mucilage treated strings with no bacteria or bacteria inoculated strings. Experiments with 14C-PHE and purified mucilage in soil slurry confirmed that the root mucilage significantly enhanced PHE mineralization (82.7%), which is 12% more than the control treatment without mucilage. The profiles of the PHE degraders generated by Denaturing gradient gel electrophoresis suggested that cowpea C1, producing a high amount of root mucilage, selectively enriched the PHE degrading bacteria population in rhizosphere. These findings indicate that root mucilage may play a significant role in enhancing PHE degradation and suggests that differences in mucilage production may be an important criterion for selection of the best plant species for use in phytoremediation of PAH contaminated soils.

Study of the succession of microbial communities for sulfur cycle response to ecological factors change in sediment of sewage system

The biological reaction process of sulfur in biofilms and sediments causes serious problems of corrosion and odor in sewage systems. This study aims to reveal the distribution and shift of microbial diversity that survives inside the sediment in response to surrounding changes in sewage systems. The successions of microbial community were compared via denaturing gradient gel electrophoresis and by constructing phylogenetic trees via maximum likelihood method. The results indicated that the shift of microbial diversity is not significant along the vertical layer inside the sediment. The influences of sediment accumulation time on the shift in microbial diversity are evident, particularly with the switch of the accumulation stage. Implementing a control strategy for oxygen injection and nitrate addition evidently inhibits and stimulates some dominant sulfate-reducing bacterial strains in the sediment. The diversity in the total bacteria is positively related with ORP, dissolved oxygen, and sulfide concentration.