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Raes B, Wang J, Horemans B, Dirckx L, Waldherr S, Kohler HPE, Springael D. The Growth Yield of Aminobacter niigataensis MSH1 on the Micropollutant 2,6-Dichlorobenzamide Decreases Substantially at Trace Substrate Concentrations. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:2859-2869. [PMID: 38289638 DOI: 10.1021/acs.est.3c06883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/15/2024]
Abstract
2,6-Dichlorobenzamide (BAM) is an omnipresent micropollutant in European groundwaters. Aminobacter niigataensis MSH1 is a prime candidate for biologically treating BAM-contaminated groundwater since this organism is capable of utilizing BAM as a carbon and energy source. However, detailed information on the BAM degradation kinetics by MSH1 at trace concentrations is lacking, while this knowledge is required for predicting and optimizing the degradation process. Contaminating assimilable organic carbon (AOC) in media makes the biodegradation experiment a mixed-substrate assay and hampers exploration of pollutant degradation at trace concentrations. In this study, we examined how the BAM concentration affects MSH1 growth and BAM substrate utilization kinetics in a AOC-restricted background to avoid mixed-substrate conditions. Conventional Monod kinetic models were unable to predict kinetic parameters at low concentrations from kinetics determined at high concentrations. Growth yields on BAM were concentration-dependent and decreased substantially at trace concentrations; i.e., growth of MSH1 diminished until undetectable levels at BAM concentrations below 217 μg-C/L. Nevertheless, BAM degradation continued. Decreasing growth yields at lower BAM concentrations might relate to physiological adaptations to low substrate availability or decreased expression of downstream steps of the BAM catabolic pathway beyond 2,6-dichlorobenzoic acid (2,6-DCBA) that ultimately leads to Krebs cycle intermediates for growth and energy conservation.
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Affiliation(s)
- Bart Raes
- Division of Soil and Water Management, KU Leuven, Heverlee B-3001, Belgium
| | - Jinsong Wang
- Division of Soil and Water Management, KU Leuven, Heverlee B-3001, Belgium
| | - Benjamin Horemans
- Division of Soil and Water Management, KU Leuven, Heverlee B-3001, Belgium
| | - Lode Dirckx
- Division of Soil and Water Management, KU Leuven, Heverlee B-3001, Belgium
| | - Steffen Waldherr
- Chemical Reactor Engineering and Safety (CREaS), KU Leuven, Heverlee B-3001, Belgium
| | - Hans-Peter E Kohler
- Department of Environmental Microbiology, Swiss Federal Institute of Aquatic Science and Technology (Eawag), 8600 Dübendorf, Switzerland
| | - Dirk Springael
- Division of Soil and Water Management, KU Leuven, Heverlee B-3001, Belgium
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Miglani R, Parveen N, Kumar A, Ansari MA, Khanna S, Rawat G, Panda AK, Bisht SS, Upadhyay J, Ansari MN. Degradation of Xenobiotic Pollutants: An Environmentally Sustainable Approach. Metabolites 2022; 12:818. [PMID: 36144222 PMCID: PMC9505297 DOI: 10.3390/metabo12090818] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Revised: 08/21/2022] [Accepted: 08/29/2022] [Indexed: 11/17/2022] Open
Abstract
The ability of microorganisms to detoxify xenobiotic compounds allows them to thrive in a toxic environment using carbon, phosphorus, sulfur, and nitrogen from the available sources. Biotransformation is the most effective and useful metabolic process to degrade xenobiotic compounds. Microorganisms have an exceptional ability due to particular genes, enzymes, and degradative mechanisms. Microorganisms such as bacteria and fungi have unique properties that enable them to partially or completely metabolize the xenobiotic substances in various ecosystems.There are many cutting-edge approaches available to understand the molecular mechanism of degradative processes and pathways to decontaminate or change the core structure of xenobiotics in nature. These methods examine microorganisms, their metabolic machinery, novel proteins, and catabolic genes. This article addresses recent advances and current trends to characterize the catabolic genes, enzymes and the techniques involved in combating the threat of xenobiotic compounds using an eco-friendly approach.
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Affiliation(s)
- Rashi Miglani
- Department of Zoology, D.S.B Campus, Kumaun University, Nainital 263002, Uttarakhand, India
| | - Nagma Parveen
- Department of Zoology, D.S.B Campus, Kumaun University, Nainital 263002, Uttarakhand, India
| | - Ankit Kumar
- Department of Pharmaceutical Sciences, Sir J. C Bose Technical Campus, Bhimtal, Nainital 263136, Uttarakhand, India
| | - Mohd. Arif Ansari
- Department of Forestry and Environmental Science, D.S.B Campus, Kumaun University, Nainital 263002, Uttarakhand, India
| | - Soumya Khanna
- Department of Anatomy, Banaras Hindu University, Varanasi 221005, Uttar Pradesh, India
| | - Gaurav Rawat
- Department of Zoology, D.S.B Campus, Kumaun University, Nainital 263002, Uttarakhand, India
| | - Amrita Kumari Panda
- Department of Biotechnology, Sant Gahira Guru University, Ambikapur 497001, Chhattisgarh, India
| | - Satpal Singh Bisht
- Department of Zoology, D.S.B Campus, Kumaun University, Nainital 263002, Uttarakhand, India
| | - Jyoti Upadhyay
- Department of Pharmaceutical Sciences, School of Health Sciences and Technology, University of Petroleum and Energy Studies, Energy Acre Campus Bidholi, Dehradun 248007, Uttarakhand, India
| | - Mohd Nazam Ansari
- Department of Pharmacology and Toxicology, College of Pharmacy, Prince Sattam Bin Abdulaziz University, Al-Kharj 11942, Saudi Arabia
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Peng X, Zheng Q, Liu L, He Y, Li T, Jia X. Efficient biodegradation of tetrabromobisphenol A by the novel strain Enterobacter sp. T2 with good environmental adaptation: Kinetics, pathways and genomic characteristics. JOURNAL OF HAZARDOUS MATERIALS 2022; 429:128335. [PMID: 35121290 DOI: 10.1016/j.jhazmat.2022.128335] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2021] [Revised: 01/19/2022] [Accepted: 01/20/2022] [Indexed: 06/14/2023]
Abstract
T2, a gram-positive bacterium capable of rapidly degrading tetrabromobisphenol A (TBBPA), and affiliated with the genus Enterobacter, was isolated for the first time from sludge that had been contaminated for several years. The TBBPA degradation data fitted the first-order model well. Under optimal conditions (pH of 7, temperature of 31 °C, TBBPA concentration of 5 mg L-1, and inoculum size of 5%), 99.4% of the initially added TBBPA was degraded after 48 h. TBBPA degradation fitted the first-order model with the half-life of 3.3 h. These results illustrated that the TBBPA degradation capability of strain T2 was significantly better than that of previously reported bacteria. A total of 17 intermediates were detected, among which five were reported for the first time. Whole-genome sequencing revealed that strain T2 had a chromosome with the total length of 4 854 376 bp and a plasmid with the total length of 21 444 bp. It harbored essential genes responsible for debromination, such as cyp450, gstB, gstA, and HADH, and genes responsible for subsequent complete mineralization, such as bioC, yrrM, Tam, and Ubil. A key protein of haloacid dehalogenases responsible for the biodegradation of TBBPA may also be involved in the regulation of TBBPA degradation in natural environment. In soil bioremediation experiments, strain T2 showed excellent environmental adaptation. It was able to biodegrade TBBPA and its typical intermediate bisphenol A efficiently. Therefore, it could potentially be applied to treat TBBPA-contaminated sites.
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Affiliation(s)
- Xingxing Peng
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangzhou 510275, China.
| | - Qihang Zheng
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
| | - Lei Liu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
| | - Yuzhe He
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
| | - Tianyu Li
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China
| | - Xiaoshan Jia
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Guangzhou 510275, China
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4
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Min J, Fang S, Peng J, Lv X, Xu L, Li Y, Hu X. Microbial detoxification of 2,4,6-tribromophenol via a novel process with consecutive oxidative and hydrolytic debromination: Biochemical, genetic and evolutionary characterization. ENVIRONMENTAL RESEARCH 2022; 205:112494. [PMID: 34890595 DOI: 10.1016/j.envres.2021.112494] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2021] [Revised: 11/26/2021] [Accepted: 12/01/2021] [Indexed: 06/13/2023]
Abstract
As a typical brominated flame retardants (BFRs), 2,4,6-tribromophenol (TBP) has serious hazard to the environmental health and its environmental fate has attracted considerable attention. Dehalogenation reaction plays key role in microbial TBP degradation and detoxification. So far, several halophenols-degrading enzymes have been reported to transform their substrate by oxidative dehalogenation; however, the molecular and biochemistry characterization of microbial hydrolytic dehalogenation is limited. In this study, Cupriavidus sp. CNP-8 with high TBP degradation activity was found to degrade TBP via an obviously differnet pathway as compared to other reported TBP-degraders. The transcription of hnp genes were significantly upregulated with TBP stimulation, indicating their involvment in TBP degradation. Enzymatic assays with 18O-labeling experiments showed that HnpAB, a two-component FAD-dependent monooxygenase, transformed TBP via consecutive oxidative and hydrolytic debromination reactions with the formation of 6-bromo-1,2,4-benzenetriol (BBT) as the ring-cleavage substrate. The function of the BBT ring-cleavage enzyme (HnpC) was also characterized both in vitro and in vivo. This finding provides new molecular mechanism of microbial detoxification of TBP and novel information of the environmental fate of this BFRs. Furthermore, to investigate the frequency of this novel dehalogenation mechanism in microbes, we also analyzed the distribution as well as the genetic structure of the hnpABC cluster by comparative genomics. Although hnpA homolog is distributed in several bacterial genera including Cupriavidus, Paraburkholderia, Variovorax and Streptomyces, the complete hnpABC cluster is only retrieved from Cupriavidus and strictly conservative in the genomes. This indicated that Cupriavidus have unique evolutionary pattern in acquiring the hnpABC to degrade TBP and its analogs, enhancing our understanding of the microbial adaptive evolution in halophenols-contaminated environment.
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Affiliation(s)
- Jun Min
- Key Laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China
| | - Suyun Fang
- Key Laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China
| | - Jian Peng
- Key Laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China
| | - Xin Lv
- Key Laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China
| | - Lingxue Xu
- Key Laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China
| | - Yan Li
- College of Life Science of Yantai University, Yantai, China
| | - Xiaoke Hu
- Key Laboratory of Coastal Biology and Bioresource Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai, 264003, China; Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, China.
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5
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Rathore S, Varshney A, Mohan S, Dahiya P. An innovative approach of bioremediation in enzymatic degradation of xenobiotics. Biotechnol Genet Eng Rev 2022; 38:1-32. [PMID: 35081881 DOI: 10.1080/02648725.2022.2027628] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Worldwide, environmental pollution due to a complex mixture of xenobiotics has become a serious concern. Several xenobiotic compounds cause environmental contamination due to their severe toxicity, prolonged exposure, and limited biodegradability. From the past few decades, microbial-assisted degradation (bioremediation) of xenobiotic pollutants has evolved as the most effective, eco-friendly, and valuable approach. Microorganisms have unique metabolism, the capability of genetic modification, diversity of enzymes, and various degradation pathways necessary for the bioremediation process. Microbial xenobiotic degradation is effective but a slow process that limits its application in bioremediation. However, the study of microbial enzymes for bioremediation is gaining global importance. Microbial enzymes have a huge ability to transform contaminants into non-toxic forms and thereby reduce environmental pollution. Recently, various advanced techniques, including metagenomics, proteomics, transcriptomics, metabolomics are effectively utilized for the characterization, metabolic machinery, new proteins, metabolic genes of microorganisms involved in the degradation process. These advanced molecular techniques provide a thorough understanding of the structural and functional aspects of complex microorganisms. This review gives a brief note on xenobiotics and their impact on the environment. Particular attention will be devoted to the class of pollutants and the enzymes such as cytochrome P450, dehydrogenase, laccase, hydrolase, protease, lipase, etc. capable of converting these pollutants into innocuous products. This review attempts to deliver knowledge on the role of various enzymes in the biodegradation of xenobiotic pollutants, along with the use of advanced technologies like recombinant DNA technology and Omics approaches to make the process more robust and effective.
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Affiliation(s)
| | - Ayushi Varshney
- Amity Institute of Biotechnology, Amity University Uttar Pradesh (AUUP), Noida, India
| | - Sumedha Mohan
- Amity Institute of Biotechnology, Amity University Uttar Pradesh (AUUP), Noida, India
| | - Praveen Dahiya
- Amity Institute of Biotechnology, Amity University Uttar Pradesh (AUUP), Noida, India
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Chou TH, Li YJ, Ko CF, Wu TY, Shih YH. Efficient hexabromocyclododecane-biodegrading microorganisms isolated in Taiwan. CHEMOSPHERE 2021; 271:129544. [PMID: 33445030 DOI: 10.1016/j.chemosphere.2021.129544] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 12/11/2020] [Accepted: 01/02/2021] [Indexed: 06/12/2023]
Abstract
The potential toxicity of hexabromocyclododecane (HBCD), its persistence in the environment, and its high bioaccumulation characteristics pose a need to remediate HBCD in the environment. Bacillus cereus and B. subtilis species complexes we isolated from Taiwan soil are capable of degrading HBCD. B. cereus can degrade HBCD with a half-life only 0.911 days. The highest efficiency of HBCD degradation by B. cereus was achieved at pH 7.0, 35 °C, and 0.10 ppm HBCD. The removal mechanism of HBCD by B. cereus is debromination and its pathway was proposed. The addition of surfactant Tween 60 improved HBCD removal but the addition of CaO2, slow-releasing oxygen, did not. These findings can facilitate the bioremediation of HBCD in the environment.
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Affiliation(s)
- Tzu-Ho Chou
- Department of Agricultural Chemistry, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 106, Taiwan
| | - Yi-Jie Li
- Department of Agricultural Chemistry, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 106, Taiwan
| | - Chi-Fong Ko
- Department of Agricultural Chemistry, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 106, Taiwan
| | - Tien-Yu Wu
- Department of Agricultural Chemistry, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 106, Taiwan
| | - Yang-Hsin Shih
- Department of Agricultural Chemistry, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 106, Taiwan.
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Abstract
Emerging pollutants in nature are linked to various acute and chronic detriments in biotic components and subsequently deteriorate the ecosystem with serious hazards. Conventional methods for removing pollutants are not efficient; instead, they end up with the formation of secondary pollutants. Significant destructive impacts of pollutants are perinatal disorders, mortality, respiratory disorders, allergy, cancer, cardiovascular and mental disorders, and other harmful effects. The pollutant substrate can recognize different microbial enzymes at optimum conditions (temperature/pH/contact time/concentration) to efficiently transform them into other rather unharmful products. The most representative enzymes involved in bioremediation include cytochrome P450s, laccases, hydrolases, dehalogenases, dehydrogenases, proteases, and lipases, which have shown promising potential degradation of polymers, aromatic hydrocarbons, halogenated compounds, dyes, detergents, agrochemical compounds, etc. Such bioremediation is favored by various mechanisms such as oxidation, reduction, elimination, and ring-opening. The significant degradation of pollutants can be upgraded utilizing genetically engineered microorganisms that produce many recombinant enzymes through eco-friendly new technology. So far, few microbial enzymes have been exploited, and vast microbial diversity is still unexplored. This review would also be useful for further research to enhance the efficiency of degradation of xenobiotic pollutants, including agrochemical, microplastic, polyhalogenated compounds, and other hydrocarbons.
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Jia X, Wang W, Yao Y, He Y, Corvini PFX, Ji R. Fate of 2,4,6-Tribromophenol in Soil Under Different Redox Conditions. BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2020; 104:707-713. [PMID: 32222794 DOI: 10.1007/s00128-020-02835-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2020] [Accepted: 03/20/2020] [Indexed: 06/10/2023]
Abstract
Fate of 2,4,6-tribromophenol (TBP) in environmental matrices is obscure. We used 14C-tracer to investigated mineralization, transformation, and non-extractable residue (NER)-formation of TBP in a soil under continuously oxic, continuously anoxic, and anoxic-oxic alteration conditions. In all cases, TBP rapidly dissipated, mineralized to CO2, and formed NERs in the soil. Considerable amounts of transformation products (2-12%) were detected during the incubation. Marked mineralization (13-26%) indicated that soil microorganisms used TBP as their energy source. About 62-70% of the initial radioactivity was transformed into NERs, being mainly attributed to binding to humic and fulvic acid fractions. TBP transformation was significantly faster under oxic conditions than under anoxic conditions, and was boosted when the soil redox changed from anoxic to oxic state. The results provide new insights into fate of TBP in soil and suggest the importance to evaluate the stability of NERs for risk assessment of TBP in soil.
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Affiliation(s)
- Xiong Jia
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing, 210023, China
| | - Wenji Wang
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing, 210023, China
| | - Yao Yao
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing, 210023, China
| | - Yujie He
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing, 210023, China.
- Quanzhou Institute for Environment Protection Industry, Nanjing University, Beifeng Road, Quanzhou, 362000, China.
| | - Philippe F-X Corvini
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing, 210023, China
- Institute for Ecopreneurship, School of Life Sciences, University of Applied Sciences and Arts Northwestern Switzerland, Hofackerstrasse 30, 4132, Muttenz, Switzerland
| | - Rong Ji
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing, 210023, China
- Quanzhou Institute for Environment Protection Industry, Nanjing University, Beifeng Road, Quanzhou, 362000, China
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Liang Z, Li G, Mai B, An T. Biodegradation of typical BFRs 2,4,6-tribromophenol by an indigenous strain Bacillus sp. GZT isolated from e-waste dismantling area through functional heterologous expression. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 697:134159. [PMID: 31491624 DOI: 10.1016/j.scitotenv.2019.134159] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2019] [Revised: 08/22/2019] [Accepted: 08/27/2019] [Indexed: 06/10/2023]
Abstract
Legacy wastewater contaminants from e-waste dismantling process such as 2,4,6-tribromophenol (TBP), one of the most widely used brominated flame retardants (BFRs), have raised concern owing to their toxicity and recalcitrance. Our previously isolated Bacillus sp. GZT from river sludge in e-waste dismantling area is a good candidate for bioremediation of BFRs contaminated sites considering its remarkable degradability of TBP and its intermediates. However, there exists a new challenge because bio-degrader cannot produce enough biomass or metabolic activity to cleanup TBP in practice complex environment. Here, we heterologously expressed and functionally characterized the genes and enzymes responsible for TBP degradation to examine the feasibility of enhancing the ability of this microorganism to detoxify TBP. Results demonstrated that five recombinant strains containing functional genes, designated tbpA, tbpB, tbpC, tbpD, and tbpE, become more tolerant toward a wide range of brominated compounds than the nontransgenic strain. Cytochrome P450 reductase encoded by tbpA gene could greatly increase efficiency to remove TBP (98.8%), as compared to wild-type strain GZT (93.2%). Its debromination intermediates 2,4-dibromophenol, 2,6-dibromo-4-methylphenol and 2-bromophenol were significantly metabolized by halophenol dehalogenases encoded by tbpB, tbpC, and tbpD, respectively. Finally, under the function of tbpE gene encoding enzyme, further debrominated product (phenol) was dramatically detoxified. To reduce the risk of these xenobiotics, the expression of these genes can be induced and significantly up-regulated during exposure to them. These results open broad scope for future study in developing genetic engineering technologies for more efficient remediation wastewater of e-waste recycling sites contaminated with TBP, which would certainly be important steps to lower TBP exposures and prevent potential health effects.
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Affiliation(s)
- Zhishu Liang
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China
| | - Guiying Li
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China.
| | - Bixian Mai
- State Key Laboratory of Organic Geochemistry, Guangdong Key Laboratory of Environmental Protection and Resources Utilization, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Taicheng An
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China
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Liang Z, Li G, Xiong J, Mai B, An T. Purification, molecular characterization and metabolic mechanism of an aerobic tetrabromobisphenol A dehalogenase, a key enzyme of halorespiration in Ochrobactrum sp. T. CHEMOSPHERE 2019; 237:124461. [PMID: 31374395 DOI: 10.1016/j.chemosphere.2019.124461] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Revised: 07/17/2019] [Accepted: 07/25/2019] [Indexed: 06/10/2023]
Abstract
Due to the detoxification of tetrabromobisphenol A (TBBPA) varies from different bacterial strains and depends on their specific enzymatic machinery, it is necessary to understand them for potential in situ bioremediation application. The special ability of our previously isolated Ochrobactrum sp. T to simultaneously debrominate and aerobic mineralize TBBPA urgent us to continuously study its degradation molecular mechanism. Herein, the purification and characterization of the dehalogenase which can debrominate TBBPA was investigated based on its corresponding encoding gene tbbpaA. Results showed that an enzyme with molecular mass of 117 kDa, Km of 26.6 μM and Vmax of 0.133 μM min-1 mg-1 was purified and designated as bromophenol dehalogenase. It was the only detected dehalogenase which exhibited TBBPA degradation ability (78%). Moreover, its activity was significantly enhanced by adding NADPH or methyl viologen to the reaction solution. The high similarity of substrate spectrum between the dehalogenase from the recombinant strain and the wild strain further indicated that it was the main dehalogenase responsible for the debromination in wild strain. Based on three identified metabolites, a metabolic pathway of TBBPA by purified enzyme under oxic condition was proposed. This study provides an excellent dehalogenase candidate for mechanistic study of aerobic dehalogenation of brominated aromatic compound.
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Affiliation(s)
- Zhishu Liang
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou 510006, China; State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Guiying Li
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou 510006, China.
| | - Jukun Xiong
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou 510006, China
| | - Bixian Mai
- State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Taicheng An
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, Guangdong Key Laboratory of Environmental Catalysis and Health Risk Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou 510006, China
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11
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Chen D, Shen J, Jiang X, Su G, Han W, Sun X, Li J, Mu Y, Wang L. Simultaneous debromination and mineralization of bromophenol in an up-flow electricity-stimulated anaerobic system. WATER RESEARCH 2019; 157:8-18. [PMID: 30947080 DOI: 10.1016/j.watres.2019.03.054] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Revised: 02/27/2019] [Accepted: 03/26/2019] [Indexed: 05/20/2023]
Abstract
Due to highly recalcitrant and toxicological nature of halogenated organic compounds, conventional anaerobic dehalogenation is often limited by low removal rate and poor process stability. Besides, the reduction intermediates or products formed during dehalogenation process, which are still toxic, required further energy-intensive aerobic post-treatment. In this study, an up-flow electricity-stimulated anaerobic system (ESAS) was developed by installing cathode underneath and anode above to realize simultaneous anaerobic debromination and mineralization of 4-bromophenol (4-BP). When cathode potential was -600 mV, high TOC removal efficiency (98.78 ± 0.96%), complete removal of 4-BP and phenol could be achieved at 4-BP loading rate of 0.58 mol m-3 d-1, suggesting debrominated product of 4-BP from cathode (i.e., phenol) would be utilized as the fuel by the bioanode of ESAS. Under high 4-BP loading rate (2.32 mol m-3 d-1) and low electron donor dosage (4.88 mM), 4-BP could be completely removed at acetate usage ratio as low as 4.21 ± 1.42 mol acetate mol-1 4-BP removal in ESAS, whereas only 13.45 ± 1.38% of 4-BP could be removed at acetate usage ratio as high as 31.28 ± 3.38 mol acetate mol-1 4-BP removal in control reactor. Besides, electrical stimulation distinctly facilitated the growth of various autotrophic dehalogenation species, phenol degradation related species, fermentative species, homoacetogens and electrochemically active species in ESAS. Moreover, based on the identified intermediates and the bacterial taxonomic analysis, possible metabolism mechanism involved in enhanced anaerobic debromination and mineralization of 4-BP in ESAS was proposed.
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Affiliation(s)
- Dan Chen
- Jiangsu Key Laboratory of Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China
| | - Jinyou Shen
- Jiangsu Key Laboratory of Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China.
| | - Xinbai Jiang
- Jiangsu Key Laboratory of Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China
| | - Guanyong Su
- Jiangsu Key Laboratory of Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China
| | - Weiqing Han
- Jiangsu Key Laboratory of Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China
| | - Xiuyun Sun
- Jiangsu Key Laboratory of Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China
| | - Jiansheng Li
- Jiangsu Key Laboratory of Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China
| | - Yang Mu
- CAS Key Laboratory of Urban Pollutant Conversion, Department of Applied Chemistry, University of Science and Technology of China, Hefei, 230026, China.
| | - Lianjun Wang
- Jiangsu Key Laboratory of Chemical Pollution Control and Resources Reuse, School of Environmental and Biological Engineering, Nanjing University of Science and Technology, Nanjing, 210094, China
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Liang Z, Li G, Mai B, Ma H, An T. Application of a novel gene encoding bromophenol dehalogenase from Ochrobactrum sp. T in TBBPA degradation. CHEMOSPHERE 2019; 217:507-515. [PMID: 30445395 DOI: 10.1016/j.chemosphere.2018.11.004] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2018] [Revised: 10/27/2018] [Accepted: 11/01/2018] [Indexed: 06/09/2023]
Abstract
Tetrabromobisphenol-A (TBBPA), a typical brominated flame retardant, leaked from commercial products into the environments has attracted people's attention around the world. Ochrobactrum sp. T capable of degradation and mineralization of TBBPA was isolated in our early work. In this study, the identification of TBBPA-degrading gene from the strain was further carried out by combining whole-genome sequencing with gene cloning and expression procedures. In total, 3877 open reading frames were found within 3.9 Mb genome and seven of them were identified as dehalogenating-relating genes. One gene with a significant ability to degrade TBBPA was designated as tbbpaA. Sequence alignments analysis showed that it shared 100% identity with haloacid dehalogenases. Furthermore, tbbpaA gene was cloned and expressed into E. coli to achieve a constructed strain. Like the original strain, the constructed strain could degrade TBBPA (6 mg L-1) with 78% of debromination efficiency and 37.8% mineralization efficiency within 96 h. Gene expression study revealed that tbbpaA was up-regulated in the presence of TBBPA. Overall, we report the identification of a functional TBBPA-degrading gene in an aerobe, which can deepen the knowledge of enhancing TBBPA removal by Strain T at the genetic level and facilitate in situ TBBPA bioremediation.
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Affiliation(s)
- Zhishu Liang
- State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guiying Li
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou 510006, China.
| | - Bixian Mai
- State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Huimin Ma
- State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Taicheng An
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou 510006, China
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Golan R, Gelman F, Kuder T, Taylor AA, Ronen Z, Bernstein A. Degradation of 4-bromophenol by Ochrobactrum sp. HI1 isolated from desert soil: pathway and isotope effects. Biodegradation 2018; 30:37-46. [DOI: 10.1007/s10532-018-9860-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Accepted: 10/16/2018] [Indexed: 12/01/2022]
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14
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Gounden AN, Singh S, Jonnalagadda SB. Simultaneous removal of 2,4,6-tribromophenol from water and bromate ion minimization by ozonation. JOURNAL OF HAZARDOUS MATERIALS 2018; 357:415-423. [PMID: 29929094 DOI: 10.1016/j.jhazmat.2018.06.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2017] [Revised: 04/08/2018] [Accepted: 06/01/2018] [Indexed: 06/08/2023]
Abstract
The study investigates the degradation of 2,4,6-tribromophenol (2,4,6-TBP) and the influence of solution pH, alkalinity, H2O2 and O3 dosage. Debromination efficiency of 2,4,6-TBP was the highest in basic water (pH = 10.61). The extent of TOC removal compared favourably with the amount of substrate converted, suggesting favourable mineralization of oxygenated by-products (OBPs). Ozonation in basic water favoured the formation of toxicBrO3-, while in acidic water (pH = 2.27) BrO3- yield was lowest. In acidic water the presence of CO32- showed negligible effect on conversion, TOC and BrO3- yield compared to ozonation alone. In basic water both 2,4,6-TBP conversion and TOC removal decreased with an increase in CO32-, hence minimizing BrO3- formation. The O3/H2O2 process showed an improvement in the debromination efficiency and TOC data revealed that total mineralization of OBP's was achieved. However, only 10% H2O2 was able to effectively decrease BrO3- formation. Increasing the ozone concentration from 20 to 100 ppm enhanced the conversion of 2,4,6-TBP and TOC removal. At low ozone concentrations poor mineralization of OBP's occurred, while complete mineralization was achieved at higher ozone dose. The reaction pathways for ozone degradation of 2,4,6-TBP in acidic and basic waters is proposed.
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Affiliation(s)
- Asogan N Gounden
- Department of Chemistry, Mangosuthu University of Technology, PO Box 12363, Jacobs, 4026, South Africa
| | - Sooboo Singh
- School of Chemistry, Westville Campus, University of KwaZulu-Natal, P Bag X54001, Durban, 4000, South Africa
| | - Sreekantha B Jonnalagadda
- School of Chemistry, Westville Campus, University of KwaZulu-Natal, P Bag X54001, Durban, 4000, South Africa.
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Tang J, Liu B, Shi Y, Zeng CY, Chen TT, Zeng L, Zhang Q. Isolation, identification, and fenvalerate-degrading potential of Bacillus licheniformis CY-012. BIOTECHNOL BIOTEC EQ 2018. [DOI: 10.1080/13102818.2018.1438210] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
Affiliation(s)
- Jie Tang
- Key Laboratory of Food Biotechnology, School of Food and Biotechnology, Xihua University, Chengdu, Sichuan, PR China
| | - Bo Liu
- Key Laboratory of Food Biotechnology, School of Food and Biotechnology, Xihua University, Chengdu, Sichuan, PR China
| | - Ying Shi
- Meishan Product Quality Supervision and Inspection Institute, Meishan, Sichuan, PR China
| | - Chao-yi Zeng
- Key Laboratory of Food Biotechnology, School of Food and Biotechnology, Xihua University, Chengdu, Sichuan, PR China
| | - Ting-ting Chen
- Key Laboratory of Food Biotechnology, School of Food and Biotechnology, Xihua University, Chengdu, Sichuan, PR China
| | - Lin Zeng
- Key Laboratory of Food Biotechnology, School of Food and Biotechnology, Xihua University, Chengdu, Sichuan, PR China
| | - Qing Zhang
- Key Laboratory of Food Biotechnology, School of Food and Biotechnology, Xihua University, Chengdu, Sichuan, PR China
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16
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Koch C, Sures B. Environmental concentrations and toxicology of 2,4,6-tribromophenol (TBP). ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2018; 233:706-713. [PMID: 29126092 DOI: 10.1016/j.envpol.2017.10.127] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2017] [Revised: 10/29/2017] [Accepted: 10/29/2017] [Indexed: 06/07/2023]
Abstract
2,4,6-Tribromophenol is the most widely produced brominated phenol. In the present review, we summarize studies dealing with this substance from an environmental point of view. We cover concentrations in the abiotic and biotic environment including humans, toxicokinetics as well as toxicodynamics, and show gaps of the current knowledge about this chemical. 2,4,6-Tribomophenol occurs as an intermediate during the synthesis of brominated flame retardants and it similarly represents a degradation product of these substances. Moreover, it is used as a pesticide but also occurs as a natural product of some aquatic organisms. Due to its many sources, 2,4,6-tribromophenol is ubiquitously found in the environment. Nevertheless, not much is known about its toxicokinetics and toxicodynamics. It is also unclear which role the structural isomer 2,4,5-tribromophenol and several degradation products such as 2,4-dibromophenol play in the environment. Due to new flame retardants that enter the market and can degrade to 2,4,6-tribromophenol, this compound will remain relevant in future years - not only in aquatic matrices, but also in house dust and foodstuff, which are an important exposure route for humans.
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Affiliation(s)
- Christoph Koch
- Aquatic Ecology and Centre for Water and Environmental Research (ZWU), University Duisburg-Essen, 45141 Essen, Germany; Deutsche Rockwool GmbH & Co. KG, 45966 Gladbeck, Germany.
| | - Bernd Sures
- Aquatic Ecology and Centre for Water and Environmental Research (ZWU), University Duisburg-Essen, 45141 Essen, Germany
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17
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Liang Z, Li G, An T. Purifying, cloning and characterizing a novel dehalogenase from Bacillus sp. GZT to enhance the biodegradation of 2,4,6-tribromophenol in water. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2017; 225:104-111. [PMID: 28359974 DOI: 10.1016/j.envpol.2017.03.043] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2016] [Revised: 03/06/2017] [Accepted: 03/18/2017] [Indexed: 06/07/2023]
Abstract
2,4,6-Tribromophenol (TBP), an intermediate of brominated flame retardants, can easily release to environment and recalcitrant to degradation. Previously, Bacillus sp. GZT, a pure aerobic strain capable of simultaneously debrominating and mineralizing TBP, was successfully isolated by us. To further obtain a practical application and dig up its TBP degradation mechanism, a total of 46.7-fold purification of a novel dehalogenase with a final specific activity of 18.9 U mg-1 and a molecular mass of 63.4 kDa was achieved. Under optimal conditions (35 °C and 200 rpm), up to 80% degradation efficiencies were achieved within 120 min. Adding H2O2, NADPH, Mn2+ and Mg2+ promoted enzyme reaction effectively; while EDTA, methyl viologen, Ni2+, Cu2+, Ca2+ and Fe2+ strongly inhibited reaction activities. The debromination of TBP was catalyzed by the enzyme at a Km of 78 μM and a Vmax of 0.65 min-1 mg protein-1, which indicated that this dehalogenase could specifically eliminate TBP with a high efficiency and stability. Based on MALDI-TOF/TOF analysis, the dehalogenase shared 98% identity with peptide ABC transporter substrate-binding protein. One open reading frame (ORF) encoding this peptide was found in Strain GZT genome, subjected to clone and expressed in Escherichia coli (E. coli) to characterize the encoding gene. Result showed that this recombinant strain could also remove as similar amount of TBP as Bacillus sp. GZT under the identical condition. Based on these results, we suggest that this newly-isolated TBP dehalogenase highlights a new approach for remediating TBP pollution.
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Affiliation(s)
- Zhishu Liang
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Protection and Resources Utilization, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guiying Li
- Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou, 510006, China
| | - Taicheng An
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Protection and Resources Utilization, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; Guangzhou Key Laboratory of Environmental Catalysis and Pollution Control, School of Environmental Science and Engineering, Institute of Environmental Health and Pollution Control, Guangdong University of Technology, Guangzhou, 510006, China.
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18
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Xiong J, Li G, An T. The microbial degradation of 2,4,6-tribromophenol (TBP) in water/sediments interface: Investigating bioaugmentation using Bacillus sp. GZT. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 575:573-580. [PMID: 27613672 DOI: 10.1016/j.scitotenv.2016.09.017] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2016] [Revised: 08/31/2016] [Accepted: 09/02/2016] [Indexed: 06/06/2023]
Abstract
The substance 2,4,6-Tribromophenol (TBP) is used as a flame retardant in electronic and electric devices, and is a replacement for pentachlorophenol in wood preservation. TBP is a contaminant in different environmental matrices, at levels where treatment is required. This study examined the relationship between the bioaugmention of TBP degradation and the evolution of the microbial community in river water/sediment microcosms. When compared with unamended controls, bioaugmentation with Bacillus sp. GZT effectively enhanced TBP biodegradation, with approximately 40.7% of the TBP removal after a 7-week incubation period, without a lag phase (p<0.01). Amendments with 2-bromophenol, 2,6-dibromophenol, and 2,4-dibromophenol did not promote TBP biodegradation in river water/sediments (p>0.05). However, TBP biodegradation was enhanced by adding other additives, including NaCl, humic acid, sodium lactate, and sodium propionate alone, especially glucose and yeast extract. A metagenomics analysis of the total 16S rRNA genes from the treatment system with bioaugmentation showed that four microbial phyla were dominant: Proteobacteria (52.08-66.22%), Actinobacteria (20.03-5.47%), Bacteroidetes (6.68-13.68%), and Firmicutes (4.53-20.83%). This study highlights the possible benefits using bioaugmentation with GZT to remediate TBP-polluted water and sediments.
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Affiliation(s)
- Jukun Xiong
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Protection and Resources Utilization, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guiying Li
- Institute of Environmental Health and Pollution Control, School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China.
| | - Taicheng An
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Protection and Resources Utilization, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; Institute of Environmental Health and Pollution Control, School of Environmental Science and Engineering, Guangdong University of Technology, Guangzhou 510006, China.
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Draft Genome Sequence of Bacillus sp. GZT, a 2,4,6-Tribromophenol-Degrading Strain Isolated from the River Sludge of an Electronic Waste-Dismantling Region. GENOME ANNOUNCEMENTS 2016; 4:4/3/e00474-16. [PMID: 27257197 PMCID: PMC4891643 DOI: 10.1128/genomea.00474-16] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Here, we report the draft genome sequence of Bacillus sp. strain GZT, a 2,4,6-tribromophenol (TBP)-degrading bacterium previously isolated from an electronic waste-dismantling region. The draft genome sequence is 5.18 Mb and has a G+C content of 35.1%. This is the first genome report of a brominated flame retardant-degrading strain.
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20
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Li G, Xiong J, Wong PK, An T. Enhancing tetrabromobisphenol A biodegradation in river sediment microcosms and understanding the corresponding microbial community. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2016; 208:796-802. [PMID: 26602791 DOI: 10.1016/j.envpol.2015.11.001] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2015] [Revised: 10/30/2015] [Accepted: 11/01/2015] [Indexed: 06/05/2023]
Abstract
In situ remediation of contaminated sediment using microbes is a promising environmental treatment method. This study used bioaugmentation to investigate the biodegradation of tetrabromobisphenol A (TBBPA) in sediment microcosms collected from an electronic-waste recycling site. Treatments included adding possible biodegradation intermediates of TBBPA, including 2,4-dibromophenol (2,4-DBP), 2,4,6-tribromophenol (TBP), and bisphenol A (BPA) as co-substrates. Bioaugmentation was done with Ochrobactrum sp. T (TBBPA-degrader) and a mixed culture of Ochrobactrum sp. T, Bacillus sp. GZT (TBP-degrader) and Bacillus sp. GZB (BPA-degrader). Results showed that bioaugmentation with Ochrobactrum sp. T significantly improved TBBPA degradation efficiencies in sediment microcosms (P < 0.01); aerobic conditions increased the microbes' degradation activities. Co-substrates 2,4-DBP, TBP and BPA inhibited biodegradation of TBBPA. A metagenomic analysis of total 16S rRNA genes from the treated sediment microcosms showed that the following dominant genera: Ochrobactrum, Parasegetibacter, Thermithiobacillus, Phenylobacterium and Sphingomonas. The genus level of Ochrobactrum increased with increased degradation time, within 10-week of incubation. Microbes from genus Ochrobactrum are mainly linked to enhance the TBBPA biodegradation.
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Affiliation(s)
- Guiying Li
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Resources Utilization and Protection, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Jukun Xiong
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Resources Utilization and Protection, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Po Keung Wong
- School of Life Sciences, The Chinese University of Hong Kong, Shatin, NT, Hong Kong Special Administrative Region
| | - Taicheng An
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Resources Utilization and Protection, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China.
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Gao Y, Jin L, Shi H, Chu Z. Characterization of a Novel Butachlor Biodegradation Pathway and Cloning of the Debutoxylase (Dbo) Gene Responsible for Debutoxylation of Butachlor in Bacillus sp. hys-1. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2015; 63:8381-8390. [PMID: 26368393 DOI: 10.1021/acs.jafc.5b03326] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Bacillus sp. strain hys-1, which was isolated from active sludge, could degrade >90% butachlor at a concentration of 100 mg/L within 7 days. The present work revealed that strain hys-1 could mineralize butachlor via the following pathway: butachlor was initially metabolized to 2-chloro-N-(2,6-diethylphenyl)-N-methylacetamide by debutoxylation and then transformed to form 2-chloro-N-(2,6-diethylphenyl)acetamide by N-demethylation. Subsequently, it was converted to 2,6-diethylaniline and further mineralized into CO2 and H2O. In addition, the catalytic efficiency of crude cell extracts descended as follows: alachlor > acetochlor > butachlor. Furthermore, a novel 744 bp gene responsible for transforming butachlor into 2-chloro-N-(2,6-diethylphenyl)-N-methylacetamide was cloned from strain hys-1 and the encoding debutoxylase was designated Dbo. Then Dbo was expressed in Escherichia coli BL21 (DE3) and purified using Ni-nitrilotriacetic acid affinity chromatography. Dbo displayed the highest activity against butachlor at pH 6.5 and 30 °C. Metal ions played an important role in Dbo activity. To the best of the authors' knowledge, this is the first report that strain hys-1 can mineralize butachlor by a novel metabolic mechanism and the first identification of a gene encoding butachlor debutoxylase.
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Affiliation(s)
- Yang Gao
- Zhejiang Ocean University , Zhoushan 316000, China
| | - Lei Jin
- Zhejiang Ocean University , Zhoushan 316000, China
- Marine Fishery Research Institute of Zhejiang Province , Zhoushan 316021, China
| | - Hui Shi
- Marine Fishery Research Institute of Zhejiang Province , Zhoushan 316021, China
| | - Zhangjie Chu
- Zhejiang Ocean University , Zhoushan 316000, China
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Xiong J, Li G, An T. Development of methodology for the determination of carbon isotope ratios using gas chromatography/combustion/isotope ratio mass spectrometry and applications in the biodegradation of phenolic brominated flame retardants and their degradation products. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2015; 29:54-60. [PMID: 25462363 DOI: 10.1002/rcm.7072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2014] [Revised: 10/06/2014] [Accepted: 10/07/2014] [Indexed: 06/04/2023]
Abstract
RATIONALE Compound-specific stable carbon isotope analysis of phenolic brominated flame retardants (BFRs) and bisphenol A (BPA) has proven informative to discriminate their source and fate apportionment in the environment. However, because these compounds contain highly polar functional groups and exist as complex mixtures in environment matrices, derivatization is a necessary step, which adds additional non-analyte carbon atoms for analyses and may alter the original stable carbon isotope ratio. It is, therefore, imperative to gain an insight into the relationship between the δ(13) C values of the BFRs and BPA derivatives and those of underivatized BFRs and BPA. METHODS The δ(13) C values of BFRs and BPA N,O-bis(trimethylsilyl)trifluoroacetamide (BSTFA) derivatives were measured by gas chromatography/combustion/isotope ratio mass spectrometry (GC/C/IRMS). The δ(13) C values of the BSTFA reagent and the standard underivatized BFRs and BPA were determined using elemental analyzer/isotope ratio mass spectrometry (EA/IRMS). The experimentally obtained δ(13) C values for BFRs and BPA derivatives were then compared with the theoretically calculated values. RESULTS The derivatization process introduces no isotopic fractionation for BFRs and BPA (the average difference between the theoretically calculated and experimentally obtained δ(13) C values was 0.06 ± 0.15‰, within the precision limits of the GC/C/IRMS measurements). Therefore, the δ(13) C values for the original underivatized BFRs and BPA were computed through a mass balance equation. CONCLUSIONS This work offers a novel tool to research the biotic or abiotic transformation processes of BFRs and BPA in the environment and will offer a perspective for the identification of the environmental source and fate of these organic compounds.
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Affiliation(s)
- Jukun Xiong
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environment Protection and Resource Utilization, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, 510640, China; University of Chinese Academy of Sciences, Beijing, 100049, China
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Li Z, Yoshida N, Wang A, Nan J, Liang B, Zhang C, Zhang D, Suzuki D, Zhou X, Xiao Z, Katayama A. Anaerobic mineralization of 2,4,6-tribromophenol to CO2 by a synthetic microbial community comprising Clostridium, Dehalobacter, and Desulfatiglans. BIORESOURCE TECHNOLOGY 2015; 176:225-232. [PMID: 25461007 DOI: 10.1016/j.biortech.2014.10.097] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2014] [Revised: 10/13/2014] [Accepted: 10/18/2014] [Indexed: 06/04/2023]
Abstract
Anaerobic mineralization of 2,4,6-tribromophenol (2,4,6-TBP) was achieved by a synthetic anaerobe community comprising a highly enriched culture of Dehalobacter sp. phylotype FTH1 acting as a reductive debrominator; Clostridium sp. strain Ma13 acting as a hydrogen supplier via glucose fermentation; and a novel 4-chlorophenol-degrading anaerobe, Desulfatiglans parachlorophenolica strain DS. 2,4,6-TBP was debrominated to phenol by the combined action of Ma13 and FTH1, then mineralized into CO2 by sequential introduction of DS, confirmed using [ring-(14)C(U)] phenol. The optimum concentrations of glucose, SO4(2-), and inoculum densities were 0.5 or 2.5mM, 1.0 or 2.5mM, and the densities equivalent to 10(4)copiesmL(-1) of the 16S rRNA genes, respectively. This resulted in the complete mineralization of 23μM 2,4,6-TBP within 35days (0.58μmolL(-1)d(-1)). Thus, using a synthetic microbial community of isolates or highly enriched cultures would be an efficient, optimizable, low-cost strategy for anaerobic bioremediation of halogenated aromatics.
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Affiliation(s)
- Zhiling Li
- State Key Laboratory of Urban Water Resources and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin 150090, China; EcoTopia Science Institute, Nagoya University, Chikusa, Nagoya 464-8603, Japan
| | - Naoko Yoshida
- Center for Fostering Young and Innovative Researchers, Nagoya Institute of Technology, Syowa, Nagoya 466-8555, Japan
| | - Aijie Wang
- State Key Laboratory of Urban Water Resources and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin 150090, China; Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Jun Nan
- State Key Laboratory of Urban Water Resources and Environment, Harbin Institute of Technology (SKLUWRE, HIT), Harbin 150090, China
| | - Bin Liang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Chunfang Zhang
- EcoTopia Science Institute, Nagoya University, Chikusa, Nagoya 464-8603, Japan
| | - Dongdong Zhang
- Graduate School of Engineering, Nagoya University, Chikusa, Nagoya 464-8603, Japan
| | - Daisuke Suzuki
- EcoTopia Science Institute, Nagoya University, Chikusa, Nagoya 464-8603, Japan
| | - Xue Zhou
- Graduate School of Environmental Studies, Nagoya University, Nagoya 464-8601, Japan
| | - Zhixing Xiao
- Graduate School of Engineering, Nagoya University, Chikusa, Nagoya 464-8603, Japan
| | - Arata Katayama
- EcoTopia Science Institute, Nagoya University, Chikusa, Nagoya 464-8603, Japan; Graduate School of Engineering, Nagoya University, Chikusa, Nagoya 464-8603, Japan; Graduate School of Environmental Studies, Nagoya University, Nagoya 464-8601, Japan.
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Dubey M, Yadav G, Kapuria A, Ghosh A, Muralidharan M, Lal D, Lal R, Dhanaraj PS, Verma M. Exploring bacterial diversity from contaminated soil samples from river Yamuna. Microbiology (Reading) 2014. [DOI: 10.1134/s0026261714050099] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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Zu L, Xiong J, Li G, Fang Y, An T. Concurrent degradation of tetrabromobisphenol A by Ochrobactrum sp. T under aerobic condition and estrogenic transition during these processes. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2014; 104:220-225. [PMID: 24726932 DOI: 10.1016/j.ecoenv.2014.03.015] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2013] [Revised: 03/10/2014] [Accepted: 03/15/2014] [Indexed: 06/03/2023]
Abstract
The effect of concurrent degradation of tetrabromobisphenol A (TBBPA) by the strain Ochrobactrum sp. T under aerobic condition was investigated. The results demonstrated that four extra energy source-addition systems still followed pseudo-first order kinetics. The addition of ethanol or glucose could promote the biodegradation ability of Ochrobactrum sp. T to TBBPA, and 90.1 percent and 77.5 percent of TBBPA (5mg L(-1)) could be removed with corresponding TBBPA half-lives of 26 and 36h, respectively, after 96h reaction. Comparatively, the degradation efficiency of the sole TBBPA system was only 72.9 percent under the same condition. In contrast, two other co-substrates 2,4,6-tribromophenol (TBP) and bisphenol A (BPA) showed a negative effect on the TBBPA biodegradation, and the degradation efficiencies of TBBPA were achieved as 44.7 percent and 67.4 percent, respectively. For the TBBPA+TBP system, the competitive inhibition for the TBBPA debromination was less than the inhibition of the toxicity to the bacterium. While for the TBBPA+BPA system, the degradation of TBBPA could be promoted at the beginning of the reaction, and was then inhibited slightly with further prolonging of reaction time. This is probably due to the substrates being oxidized, and BPA can consume partial oxygen and provide the electrons during the concurrent biodegradation process. In addition, although higher estrogenic activity could be detected for the debrominated intermediates in TBBPA co-degradation process than the original TBBPA, the estrogenicity of the whole system still decreased finally after 96h degradation.
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Affiliation(s)
- Lei Zu
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Resources Utilization and Protection, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; College of Chemistry and Chemical Engineering, Baoji University of Arts and Sciences, Baoji 721013, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jukun Xiong
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Resources Utilization and Protection, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Guiying Li
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Resources Utilization and Protection, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China.
| | - Yanjun Fang
- Institute of Hygiene and Environmental Medicine, Academy of Military Medical Science, Tianjin 300050, China
| | - Taicheng An
- State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Resources Utilization and Protection, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; Key Laboratory of Reproduction and Genetics of Guangdong Higher Education Institutes, Guangzhou Medical University and The Third Affiliated Hospital, Guangzhou 510150, China.
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Lu M, Zhang ZZ, Wu XJ, Xu YX, Su XL, Zhang M, Wang JX. Biodegradation of decabromodiphenyl ether (BDE-209) by a metal resistant strain, Bacillus cereus JP12. BIORESOURCE TECHNOLOGY 2013; 149:8-15. [PMID: 24084199 DOI: 10.1016/j.biortech.2013.09.040] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2013] [Revised: 09/06/2013] [Accepted: 09/08/2013] [Indexed: 06/02/2023]
Abstract
A metal resistant bacterial strain, Bacillus cereus JP12, could use decabromodiphenyl ether (BDE-209) as the sole carbon and energy source for growth in mineral salt medium. Under the conditions of pH 6.0, 30°C, 150 rpm and an inoculum of OD600=0.6, more than 88% of the initial BDE-209 (1mg/L) was degraded after 12 days. The addition of appropriate surfactants and additional carbon sources could enhance the biodegradation efficiency of BDE-209. The presence of Cu(2+) (≤ 8 mg/L) and Zn(2+) (≤ 15 mg/L) provided a slight stimulating effect on BDE-209 removal. However, BDE-209 biodegradation efficiency was decreased when adding higher levels of metals due to reduced substrate availability caused by excess metal adsorption into the cell surface. Biosorption of heavy metals by JP12 led to release of light metals such as K(+) and Na(+). A BDE-209 biodegradation pathway was proposed on the basis of metabolite identification.
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Affiliation(s)
- Mang Lu
- State Key Laboratory of Heavy Oil Processing, China University of Petroleum, Beijing 102249, China; School of Materials Science and Engineering, Jingdezhen Ceramic Institute, Jingdezhen 333403, Jiangxi Province, China
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Li G, Zu L, Wong PK, Hui X, Lu Y, Xiong J, An T. Biodegradation and detoxification of bisphenol A with one newly-isolated strain Bacillus sp. GZB: kinetics, mechanism and estrogenic transition. BIORESOURCE TECHNOLOGY 2012; 114:224-230. [PMID: 22507902 DOI: 10.1016/j.biortech.2012.03.067] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2012] [Revised: 03/21/2012] [Accepted: 03/22/2012] [Indexed: 05/31/2023]
Abstract
A facultative anaerobic bacterial strain, Bacillus sp. GZB, was isolated and identified to effectively degrade bisphenol A (BPA) under anaerobic and aerobic conditions. Under anaerobic condition, Fe(3+) can be used as an electron acceptor for Bacillus sp. GZB, while 5 mg L(-1) BPA can be fully removed and 51% was mineralized under optimal aerobic conditions. Additionally, seven metabolites were identified by GC-MS, four of which were doubly confirmed by authentic standards (two synthesized) and three of four initial degradation intermediates were also quantified during BPA aerobic degradation. The evolution of 1-(4-hydroxyphenyl)ethanone showed a similar tendency with estrogenic activity changing during BPA biodegradation course, indicating its potential estrogenicity. The estrogenicity temporary increase first and decline ultimately during BPA degradation revealing the GZB can effectively detoxify BPA as well as its estrogenic intermediates. This was the first study to report a facultative anaerobic strain can degrade BPA with or without of oxygen.
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Affiliation(s)
- Guiying Li
- The State Key Laboratory of Organic Geochemistry and Guangdong Key Laboratory of Environmental Protection and Resources Utilization, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
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